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Abstract: Soil quality in Mediterranean conventional and organic stockless arable systems was assessed by a multidisciplinary approach. At the end of the first cycle of a 5-year crop rotation (2002–2006) in the Mediterranean Arable Systems Comparison Trial (MASCOT) long-term experiment, the effects of organic and conventional management systems were evaluated by using soil chemical, biochemical and biological parameters. Chemical and biochemical parameters linked to soil C cycle, arbuscular mycorrhizal fungi (AMF) and microarthropod communities were analysed according to a comparative approach. Results suggested a higher soil carbon sequestration in the organic respect to the conventional system, as shown by the values of total organic C (9.5 and 7.8gkg−1, for organic and conventional system, respectively) and potentially mineralisable C (277 and 254mgkg−1, for organic and conventional system, respectively). AMF population, AMF root colonisation and diversity of microarthropod population were slightly influenced by management system. On the other hand, mites/collembolans ratio was higher in conventionally than in organically managed soil (2.67 and 1.30, respectively), indicating as organic managed soils were more disturbed than conventional ones, probably as the consequence of the more frequent soil tillage performed for mechanical weeds control. The overall results demonstrated that, even in the short-term, the implementation of organically managed stockless systems in Mediterranean areas determined significant changes of some attributes for soil quality evaluation. [Copyright &y& Elsevier]