1. Chromosome-level reference genome assembly of the gyrfalcon (Falco rusticolus) and population genomics offer insights into the falcon population in Mongolia.
- Author
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Al-Ajli FO, Formenti G, Fedrigo O, Tracey A, Sims Y, Howe K, Al-Karkhi IM, Althani AA, Jarvis ED, Rahman S, and Ayub Q
- Subjects
- Animals, Mongolia, Genetics, Population, Genome, Genomics methods, Phylogeny, Chromosomes genetics, Falconiformes genetics, Falconiformes classification, Haplotypes
- Abstract
The taxonomic classification of a falcon population found in the Mongolian Altai region in Asia has been heavily debated for two centuries and previous studies have been inconclusive, hindering a more informed conservation approach. Here, we generated a chromosome-level gyrfalcon reference genome using the Vertebrate Genomes Project (VGP) assembly pipeline. Using whole genome sequences of 49 falcons from different species and populations, including "Altai" falcons, we analyzed their population structure, admixture patterns, and demographic history. We find that the Altai falcons are genomic mosaics of saker and gyrfalcon ancestries, and carry distinct W and mitochondrial haplotypes that cluster with the lanner falcon. The Altai maternally-inherited haplotypes diverged 422,000 years before present (290,000-550,000 YBP) from the ancestor of sakers and gyrfalcons, both of which, in turn, split 109,000 YBP (70,000-150,000 YBP). The Altai W chromosome has 31 coding variants in 29 genes that may possibly influence important structural, behavioral, and reproductive traits. These findings provide insights into the question of Altai falcons as a candidate distinct species., Competing Interests: Declarations. Competing interests: The authors declare that they have no competing interests. Ethics approval: Sample collection was carried out under the official approval of the Ministry of Municipality and Environment in Qatar (Reference No. 2017/283748) and by trained veterinarians at Souq Waqif Falcon Hospital, Doha, Qatar. The blood samples were only taken during routine diagnostics from falcons being checked for purposes unrelated to the research activity and the researcher had no influence on the timing or location of the medical check-up. These blood samples would have normally been discarded if the researcher had not asked for them. The Monash University Animal Ethics Committee (AEC) advised that such activity, considered as scavenging, did not require animal ethics approval., (© 2025. The Author(s).)
- Published
- 2025
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