1. The diagnostic yield of whole-exome sequencing targeting a gene panel for hearing impairment in The Netherlands.
- Author
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Zazo Seco C, Wesdorp M, Feenstra I, Pfundt R, Hehir-Kwa JY, Lelieveld SH, Castelein S, Gilissen C, de Wijs IJ, Admiraal RJ, Pennings RJ, Kunst HP, van de Kamp JM, Tamminga S, Houweling AC, Plomp AS, Maas SM, de Koning Gans PA, Kant SG, de Geus CM, Frints SG, Vanhoutte EK, van Dooren MF, van den Boogaard MH, Scheffer H, Nelen M, Kremer H, Hoefsloot L, Schraders M, and Yntema HG
- Subjects
- Connexin 26, Connexins genetics, DNA Copy Number Variations, Extracellular Matrix Proteins genetics, GPI-Linked Proteins genetics, Genetic Testing standards, Hearing Loss diagnosis, Hearing Loss epidemiology, Humans, Intercellular Signaling Peptides and Proteins, Membrane Proteins genetics, Mutation, Myosin Heavy Chains genetics, Myosins genetics, Netherlands, Sequence Analysis, DNA standards, Exome, Genetic Testing statistics & numerical data, Hearing Loss genetics, Sequence Analysis, DNA statistics & numerical data
- Abstract
Hearing impairment (HI) is genetically heterogeneous which hampers genetic counseling and molecular diagnosis. Testing of several single HI-related genes is laborious and expensive. In this study, we evaluate the diagnostic utility of whole-exome sequencing (WES) targeting a panel of HI-related genes. Two hundred index patients, mostly of Dutch origin, with presumed hereditary HI underwent WES followed by targeted analysis of an HI gene panel of 120 genes. We found causative variants underlying the HI in 67 of 200 patients (33.5%). Eight of these patients have a large homozygous deletion involving STRC, OTOA or USH2A, which could only be identified by copy number variation detection. Variants of uncertain significance were found in 10 patients (5.0%). In the remaining 123 cases, no potentially causative variants were detected (61.5%). In our patient cohort, causative variants in GJB2, USH2A, MYO15A and STRC, and in MYO6 were the leading causes for autosomal recessive and dominant HI, respectively. Segregation analysis and functional analyses of variants of uncertain significance will probably further increase the diagnostic yield of WES.
- Published
- 2017
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