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Abstract Separation and treatment of human urine from domestic wastewater have been recognized as a sustainable alternative to conventional urban sanitation system, but the unique water quality of source-separated urine, such as high nutrient, insufficient alkalinity and low COD/nitrogen ratio, poses challenges to the biological nitrogen removal process. It was hypothesized that a physicochemical pre-treatment should be adopted to not only reduce nitrogen load but adjust water quality suitable for biological treatment. In this study, a vacuum thermal stripping process coupled to acid absorption was used as a pre-treatment to recover ammonia from hydrolyzed urine in the form of ammonium sulphate. The maximal ammonia mass transfer coefficient of 17.6 mm/h was obtained under 60 °C and 21.3 kPa 80% of the nitrogen in hydrolyzed urine was recovered in 3 h batch stripping experiments without pH adjustment, corresponding to a nitrogen recovery loading rate of 36 kg N/m3⋅d. The majority of organic matters were retained in urine solutions, thus COD/N and alkalinity/NH 4 + N ratios were elevated to 4.75 and 4.37, respectively. Phosphorus recovery could be simultaneously obtained in stripping process by adding MgCl 2. The remaining nitrogen was effectively removed via short-cut nitrification and denitrification in an anoxic/oxic membrane bioreactor. More than 95% of overall nutrient recovery/removal from urine was achieved with a minimal consumption of external resources. The economic assessment of the technique showed that the recovery/removal of nutrients from 1 m3 of urine can make a profit of € 0.26. Graphical abstract Image 1 Highlights • Vacuum thermal stripping (VTS) was used to recover N from source-separated urine. • VTS recovered 80% N and adjusted C/N and alkalinity/N ratios in urine solution. • No external C source was required for biological N removal. • Over 95% P and N recovery/removal was achieved. [ABSTRACT FROM AUTHOR]