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Many avian species endemic to Aotearoa New Zealand were driven to extinction or reduced to relict populations following successive waves of human arrival, due to hunting, habitat destruction and the introduction of mammalian predators. Among the affected species were the large flightless South Island takahē (Porphyrio hochstetteri) and the moho (North Island takahē; P. mantelli), with the latter rendered extinct and the former reduced to a single relictual population. Little is known about the evolutionary history of these species prior to their decline and/or extinction. Here we sequenced mitochondrial genomes from takahē and moho subfossils (12 takahē and 4 moho) and retrieved comparable sequence data from takahē museum skins (n = 5) and contemporary individuals (n = 17) to examine the phylogeny and recent evolutionary history of these species. Our analyses suggest that prehistoric takahē populations lacked deep phylogeographic structure, in contrast to moho, which exhibited significant spatial genetic structure, albeit based on limited sample sizes (n = 4). Temporal genetic comparisons show that takahē have lost much of their mitochondrial genetic diversity, likely due to a sudden demographic decline soon after human arrival (~750 years ago). Time‐calibrated phylogenetic analyses strongly support a sister species relationship between takahē and moho, suggesting these flightless taxa diverged around 1.5 million years ago, following a single colonisation of New Zealand by a flighted Porphyrio ancestor approximately 4 million years ago. This study highlights the utility of palaeogenetic approaches for informing the conservation and systematic understanding of endangered species whose ranges have been severely restricted by anthropogenic impacts. [ABSTRACT FROM AUTHOR]

Marine organisms are under threat from a simultaneous combination of climate change stressors, including warming sea surface temperatures (SST), marine heatwave (MHW) episodes, and hypoxic events. This study sought to investigate the impacts of these stressors on the Australasian snapper (C. auratus) -- a finfish species of high commercial and recreational importance, from the largest snapper fishery in Aotearoa New Zealand (SNA1). AMHW scenario was simulated from 21°C (current February SST average for north-eastern New Zealand) to a future predicted level of 25°C, with the whole-animal and mitochondrial metabolic performance of snapper in response to hypoxia and elevated temperature tested after 1-, 10-, and 30-days of thermal challenge. It was hypothesised that key indicators of snapper metabolic performance would decline after 1-day of MHW stress, but that partial recovery might arise as result of thermal plasticity after chronic (e.g., 30-day) exposures. In contrast to this hypothesis, snapper performance remained high throughout the MHW: 1) Aerobic metabolic scope increased after 1-day of 25°C exposure and remained high. 2) Hypoxia tolerance, measured as the critical O2 pressure and O2 pressure where loss of equilibrium occurred, declined after 1-day of warm-acclimation, but recovered quickly with no observable difference from the 21°C control following 30-days at 25°C. 3) The performance of snapper mitochondria was also maintained, with oxidative phosphorylation respiration and proton leak flux across the inner mitochondrial membrane of the heart remaining mostly unaffected. Collectively, the results suggest that heart mitochondria displayed resilience, or plasticity, in snapper chronically exposed to 25°C. Therefore, contrary to the notion of climate change having adverse metabolic effects, future temperatures approaching 25°C may be tolerated by C. auratus in Northern New Zealand. Even in conjunction with supplementary hypoxia, 25°C appears to represent a metabolically optimal temperature for this species. [ABSTRACT FROM AUTHOR]

We use genomic information to tell us stories of evolutionary origins. But what does it mean when different genomes report wildly different accounts of lineage history? This genomic "discordance" can be a consequence of a fascinating suite of natural history and evolutionary phenomena, from the different inheritance mechanisms of nuclear versus cytoplasmic (mitochondrial and plastid) genomes to hybridization and introgression to horizontal transfer. Here, we explore how we can use these distinct genomic stories to provide new insights into the maintenance of sexual reproduction, one of the most important unanswered questions in biology. We focus on the strikingly distinct nuclear versus mitochondrial versions of the story surrounding the origin and maintenance of asexual lineages in Potamopyrgus antipodarum, a New Zealand freshwater snail. While key questions remain unresolved, these data inspire multiple testable hypotheses that can be powerfully applied across a broad range of taxa toward a deeper understanding of the causes and consequences of mitonuclear discordance, the maintenance of sex, and the origin of new asexual lineages. [ABSTRACT FROM AUTHOR]

Recent advances in long-read sequencing technology have allowed for single-molecule sequencing of entire mitochondrial genomes, opening the door for direct investigation of the mitochondrial genome architecture and recombination. We used PacBio sequencing to reassemble mitochondrial genomes from two species of New Zealand freshwater snails, Potamopyrgus antipodarum and Potamopyrgus estuarinus. These assemblies revealed a ∼1.7 kb structure within the mitochondrial genomes of both species that was previously undetected by an assembly of short reads and likely corresponding to a large noncoding region commonly present in the mitochondrial genomes. The overall architecture of these Potamopyrgus mitochondrial genomes is reminiscent of the chloroplast genomes of land plants, harboring a large single-copy (LSC) region and a small single-copy (SSC) region separated by a pair of inverted repeats (IRa and IRb). Individual sequencing reads that spanned across the Potamopyrgus IRa-SSC-IRb structure revealed the occurrence of a "flip-flop" recombination. We also detected evidence for two distinct IR haplotypes and recombination between them in wild-caught P. estuarinus , as well as extensive intermolecular recombination between single-nucleotide polymorphisms in the LSC region. The chloroplast-like architecture and repeat-mediated mitochondrial recombination we describe here raise fundamental questions regarding the origins and commonness of inverted repeats in cytoplasmic genomes and their role in mitochondrial genome evolution. [ABSTRACT FROM AUTHOR]

Aim: Freshwater fish radiations are often characterized by multiple closely related species in close proximity, which can lead to introgression and associated discordance of mitochondrial and nuclear characterizations of species diversity. As a case in point, single locus nuclear versus mitochondrial analyses of New Zealand's stream‐resident Galaxias vulgaris complex have yielded conflicting phylogenies. Our goal is to use genome‐wide divergence patterns among these fishes to evaluate the potential role of mitochondrial capture in obscuring species diversity, and to understand how ancient and anthropogenic drainage modification explain this diversity. Location: Freshwater ecosystems of New Zealand. Methods: We generate and analyse a genome‐wide dataset comprising 52,352 SNPs across 187 Galaxias specimens to resolve the phylogeny of this recent fish radiation. We conduct phylogenetic, PCA, STRUCTURE, and ABBA‐BABA analyses to evaluate the evolutionary relationships of lineages in the context of natural and anthropogenic river drainage alterations. Results: In addition to the 11 previously recognized stream‐resident lineages, genome‐wide data reveal a twelfth candidate species (G. 'Pomahaka'), apparently obscured by introgressive mitochondrial capture. We identify additional examples of mito‐nuclear discordance and putative mitochondrial capture, likely mediated by geological and anthropogenic modification of drainage boundaries. Main conclusions: Our study highlights the need for genome‐wide approaches for delimiting freshwater biodiversity. Genetic data also reveal the influence of drainage history on freshwater biodiversity, including the rapid divergence of recently fragmented fish populations, and the conservation genetic risks of anthropogenic translocations events. [ABSTRACT FROM AUTHOR]

The objective of this study was to assess hepatic ATP synthesis in Holstein cows of North American and New Zealand origins and the gluconeogenic pathway, one of the pathways with the highest ATP demands in the ruminant liver. Autumn-calving Holstein cows of New Zealand and North American origins were managed in a pasture-based system with supplementation of concentrate that represented approximately 33% of the predicted dry matter intake during 2017, 2018, and 2019, and hepatic biopsies were taken during mid-lactation at 174 ± 23 days in milk. Cows of both strains produced similar levels of solids-corrected milk, and no differences in body condition score were found. Plasma glucose concentrations were higher for cows of New Zealand versus North American origin. Hepatic mitochondrial function evaluated measuring oxygen consumption rates showed that mitochondrial parameters related to ATP synthesis and maximum respiratory rate were increased for cows of New Zealand compared with North American origin. However, hepatic gene expression of pyruvate carboxylase, phosphoenolpyruvate carboxykinase, and pyruvate dehydrogenase kinase was increased in North American compared with New Zealand cows. These results altogether suggest an increased activity of the tricarboxylic cycle in New Zealand cows, leading to increased ATP synthesis, whereas North American cows pull tricarboxylic cycle intermediates toward gluconeogenesis. The fact that this occurs during mid-lactation could account for the increased persistency of North American cows, especially in a pasture-based system. In addition, we observed an augmented mitochondrial density in New Zealand cows, which could be related to feed efficiency mechanisms. In sum, our results contribute to the elucidation of hepatic molecular mechanisms in dairy cows in production systems with higher inclusion of pastures. [ABSTRACT FROM AUTHOR]

Rabbit breeds in Egypt are local and adapted foreign breeds that have been imported since the middle of the last century. Stressful environmental conditions including climatic changes, exposure to diseases and breeding selection have an influence on how gene flow has shaped the genetic diversity of the breeds. Mitochondrial DNA D-loop is a genetic marker used to trace the geographic distribution of genetic variation for the investigation of expansions, migrations and other gene flow patterns. The study aimed to determine the genetic diversity of the mitochondrial DNA D-loop (mtDNA D-loop) in Black Baladi, Red Baladi, Gabali, APRI line and New Zealand breeds to gather the scientific data required to create a proper conservation and sustainable management plan. Blood samples were taken from animals unrelated to each other. A 332-bp of mtDNA D-loop was successfully amplified and alignment sequences were deposited in the GenBank database. The results detected six haplotypes in the five breeds. Haplotype diversity within individual breeds varied from 0 (Red Baladi) to 0.551±0.114 (Gabali). The nucleotide diversity (π) value was relatively low (0.001-0.006), with greater values in APRI and New Zealand. Pairwise distances between breeds yielded varying values ranging from 0 to 0.254, and the values between the Red Baladi and other breeds were comparatively high, with pairwise distances from 0.172 to 0.254. The phylogenetic analysis involved 74 nucleotide sequences of the Egyptian rabbit and thirty-one sequences retrieved from GenBank of the reference samples of different haplogroups. The results of the phylogenetic analysis correlated to the reference mtDNA GenBank database showed that the five Egyptian rabbit breeds were grouped into haplotypes A, B and K. The results of the genetic diversity using mtDNA shed light on the importance of the local breed's genetic diversity information and revealed unique mtDNA haplotypes, which is an important finding for breeding strategies designed to conserve genetic variants and provide sustainable management. [ABSTRACT FROM AUTHOR]

Molecular techniques have become important tools to investigate cryptic diversity and phylogeographic patterns. Mitochondrial markers have revealed that the temperate red alga Asparagopsis armata contains two cryptic clades. The A. armata species complex is native to Australia and New Zealand and has been introduced around the world, particularly to Europe. Previous sequencing has focused on A. armata outside of its native range, and there are few sequences available from Australia and New Zealand. Our study investigated cryptic diversity and phylogeographic patterns for over 60 individuals from 7 locations around New Zealand using the mitochondrial cox2-3 spacer and plastid rbcL markers, and found that both cryptic clades within A. armata (L1 and L2) can be found in New Zealand. For the first time, our study has revealed haplotype variation (A and B) within each of the two cryptic A. armata clades. Asparagopsis armata L1A has been found in Australia, Europe and South Africa and is the only invasive lineage currently known, while A. armata haplotype L1B is found throughout New Zealand. In addition, A. armata L2A has been found only in Australia, and A. armata L2B has a southern distribution in New Zealand. The two mitochondrial lineages from New Zealand (L1B and L2B) were found to coexist in several locations. Further work is needed to characterize any differences in the morphology, physiology and biochemistry of the four genetically distinct mitochondrial lineages within the two cryptic clades, as well as their geographic and ecological distributions. [ABSTRACT FROM AUTHOR]

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'Go Slow myopathy' (GSM) is a suspected toxic myopathy in dogs that primarily occurs in the North Island of New Zealand, and affected dogs usually have a history of consuming meat, offal or bones from wild pigs (including previously frozen and/or cooked meat). Previous epidemiological and pathological studies on GSM have demonstrated that changes in mitochondrial structure and function are most likely caused by an environmental toxin that dogs are exposed to through the ingestion of wild pig. The disease has clinical, histological and biochemical similarities to poisoning in people and animals from the plant Ageratina altissima (white snakeroot). Aqueous and lipid extracts were prepared from liver samples of 24 clinically normal dogs and 15 dogs with GSM for untargeted liquid chromatography-mass spectrometry. Group-wise comparisons of mass spectral data revealed 38 features that were significantly different (FDR<0.05) between normal dogs and those with GSM in aqueous extracts, and 316 significantly different features in lipid extracts. No definitive cause of the myopathy was identified, but alkaloids derived from several plant species were among the possible identities of features that were more abundant in liver samples from affected dogs compared to normal dogs. Mass spectral data also revealed that dogs with GSM have reduced hepatic phospholipid and sphingolipid concentrations relative to normal dogs. In addition, affected dogs had changes in the abundance of kynurenic acid, various dicarboxylic acids and N-acetylated branch chain amino acids, suggestive of mitochondrial dysfunction. • 'Go Slow' myopathy (GSM) of dogs in New Zealand has been associated with the ingestion of wild pig. • The cause of GSM is unknown, although studies have demonstrated changes to the structure of mitochondria in affected dogs. • Aqueous and lipid extracts of liver from 24 normal dogs and 15 dogs with the myopathy were analysed by LC-MS. • No cause was identified, but several mass spectral features in GSM dogs could be consistent with plant-derived alkaloids. • The disease is associated with changes in the abundance of phospholipids, kynurenic acid and N-acetylated amino acids. [ABSTRACT FROM AUTHOR]

Despite the mitochondrion's long‐recognized role in energy production, mitochondrial DNA (mtDNA) variation commonly found in natural populations was assumed to be effectively neutral. However, variation in mtDNA has now been increasingly linked to phenotypic variation in life history traits and fitness. We examined whether the relative fitness in native and invasive common wasp (Vespula vulgaris) populations in Belgium and New Zealand (NZ), respectively, can be linked to mtDNA variation. Social wasp colonies in NZ were smaller with comparatively fewer queen cells, indicating a reduced relative fitness in the invaded range. Interestingly, queen cells in this population were significantly larger leading to larger queen offspring. By sequencing 1,872 bp of the mitochondrial genome, we determined mitochondrial haplotypes and detected reduced genetic diversity in NZ. Three common haplotypes in NZ frequently produced many queens, whereas the four rare haplotypes produced significantly fewer or no queens. The entire mitochondrial genome for each of these haplotypes was sequenced to identify polymorphisms associated with fitness reduction. We found 16 variable sites; however, no nonsynonymous mutation that was clearly causing impaired mitochondrial function was detected. We discuss how detected variants may alter secondary structures, gene expression or mito‐nuclear interactions, or could be associated with nuclear‐encoded variation. Whatever the ultimate mechanism, we show reduced fitness and mtDNA variation in an invasive wasp population as well as specific mtDNA variants associated with fitness variation within this population. Ours is one of only a few studies that confirm fitness impacts of mtDNA variation in wild nonmodel populations. [ABSTRACT FROM AUTHOR]

In this study, the complete mitochondrial (mt) genome of the New Zealand parasitic blowfly Lucilia sericata (green bottle blowfly) field strain NZ_LucSer_NP was generated using next-generation sequencing technology. The length of complete the mt genome is 15,938 bp, with 39.4% A, 13.0% C, 9.3% G, and 38.2% T nucleotide distribution. The complete mt genome consists of 13 protein-coding genes (PCGs), two ribosomal RNAs, 22 transfer RNAs, and a 1124 bp non-coding region, similar to most metazoan mt genomes. Phylogenetic analysis showed that L. sericata NZ_LucSer_NP forms a monophyletic cluster with the remaining six Lucilia species and the Calliphoridae are polyphyletic. This study provides the first complete mt genome sequence for a L. sericata blowfly species derived from New Zealand to facilitate species identification and phylogenetic analysis. [ABSTRACT FROM AUTHOR]

In this study, the complete mitochondrial (mt) genome of the New Zealand parasitic blowfly Calliphora vicina (blue bottle blowfly) field strain NZ_CalVic_NP was generated using next-generation sequencing technology and annotated. The 16,518 bp mt genome consists of 13 protein-coding genes, two ribosomal RNAs, 22 transfer RNAs, and a 1689 bp non-coding region, similar to the two other available C. vicina and most metazoan mt genomes. Phylogenetic analysis showed that C. vicina NZ_CalVic_NP forms a monophyletic cluster with the remaining three Calliphorinae species. The complete mt genome sequence of C. vicina NZ_CalVic_NP is a resource to facilitate future species- and strain-level identification research and investigations into the evolutionary provenance within the Calliphoridae. [ABSTRACT FROM AUTHOR]

We report the mitochondrial genome of Sabella spallanzanii, an invasive Mediterranean sabellid introduced to Australia and New Zealand. The mitogenome is 15,581 bp long and consists of 38 genes, including 13 protein coding genes, two rRNA genes, and 23 tRNA genes. It shows deviations from the putative annelid ground pattern, such as gene order re-arrangements and regions encoding on the negative strand. It is, however, very different from the mitogenome of the closely related serpulid, Spirobranchus giganteus. Phylogenetic analyses of the mitochondrial genes support a sister relationship of Sabella spallanzanii and Spirobranchus giganteus. [ABSTRACT FROM AUTHOR]

Amaurobioides are restricted to the spray zone of southern continents, where they live in small, isolated populations and hunt from silk retreats built in rock crevices. A Star BEAST species tree based on ITS1 nuclear and ND1 mitochondrial genes did not support the hypothesis that this unusual niche linked the evolutionary history of these spiders to geological events reshaping Gondwana into present-day Australia and New Zealand. Instead, it showed that Amaurobioides reached Australia approximately 4.5 Mya and dispersed twice to New Zealand. Approximately 2.37 Mya, spiders from Tasmania colonized the Deep South of the South Island and, approximately 0.38 Mya, those from South Australia colonized more northern regions. Thus, the present study further limits the scope of the Moa's Ark hypothesis of vicariant New Zealand biogeography. [ABSTRACT FROM AUTHOR]

Aim We used endemic frogs to test the hypothesis that New Zealand was fully submerged during the Oligocene marine transgression ( c. 25-35 Ma, the Oligocene drowning) and that all the land biota subsequently arrived by dispersal - including the poorly dispersing frogs. Location New Zealand. Methods The complete mitochondrial genome of the New Zealand native frog Leiopelma hochstetteri was sequenced, assembled and analysed, and compared with that of L. archeyi. Results Using many phylogenetic analyses we examined the evolutionary relationships of the two species of Leiopelma, both for the deepest divergence within New Zealand and relative to other frogs. Our results give estimates of well over 65 Ma for the first divergence of leiopelmatid frogs within New Zealand, and over 150 Ma for the divergence of Leiopelma from its closest relative, the North American tailed frog Ascaphus truei. Main conclusions The identification of such a deep divergence among the extant Leiopelma species provides some of the strongest support yet for a mixed-age model for the origin of New Zealand's terrestrial biota, where some elements are of vicariant origin and others have arisen by long-distance dispersal. This contradicts a full drowning model and supports the view that there must have been some continuous land through the Oligocene. [ABSTRACT FROM AUTHOR]

The effects of light exposure on the retina have been carefully considered in recent years. The purpose of the current study was to investigate the effect of flashed light with low and high intensity on the photoreceptor layer of rabbit. Fifteen adult male New Zealand White rabbits were randomly divided into 3 groups: a control group, experimental group I (exposed to 60 W of flashed light 5 times), and experimental group II (exposed to 1000 W of flashed light 5 times). The retinas of the eyes were removed and studied by transmission electron microscope. The photoreceptor layer damage in experimental group II contained outer segment loss, vacuolated and disorganized mitochondria, vacuolization, cell swelling, and pyknotic, karyorrhexis, and karyolytic nuclei. The results suggested that high-intensity flashed light (1000 W) caused more photoreceptor layer damage than low-intensity light (60 W). [ABSTRACT FROM AUTHOR]

Background: The New Zealand (NZ) cicada fauna contains two co-distributed lineages that independently colonized the isolated continental fragment in the Miocene. One extensively studied lineage includes 90% of the extant species (Kikihia + Maoricicada + Rhodopsalta; ca 51 spp.), while the other contains just four extant species (Amphipsalta - 3 spp. + Notopsalta - 1 sp.) and has been little studied. We examined mitochondrial and nuclear-gene phylogenies and phylogeography, Bayesian relaxed-clock divergence timing (incorporating literature-based uncertainty of molecular clock estimates) and ecological niche models of the species from the smaller radiation. Results: Mitochondrial and nuclear-gene trees supported the monophyly of Amphipsalta. Most interspecific diversification within Amphipsalta-Notopsalta occurred from the mid-Miocene to the Pliocene. However, interspecific divergence time estimates had large confidence intervals and were highly dependent on the assumed tree prior, and comparisons of uncorrected and patristic distances suggested difficulty in estimation of branch lengths. In contrast, intraspecific divergence times varied little across analyses, and all appear to have occurred during the Pleistocene. Two large-bodied forest taxa (A. cingulata, A. zelandica) showed minimal phylogeographic structure, with intraspecific diversification dating to ca. 0.16 and 0.37 Ma, respectively. Mid-Pleistocene-age phylogeographic structure was found within two smaller-bodied species (A. strepitans - 1.16 Ma, N. sericea - 1.36 Ma] inhabiting dry open habitats. Branches separating independently evolving species were long compared to intraspecific branches. Ecological niche models hindcast to the Last Glacial Maximum (LGM) matched expectations from the genetic datasets for A. zelandica and A. strepitans, suggesting that the range of A. zelandica was greatly reduced while A. strepitans refugia were more extensive. However, no LGM habitat could be reconstructed for A. cingulata and N. sericea, suggesting survival in microhabitats not detectable with our downscaled climate data. Conclusions: Unlike the large and continuous diversification exhibited by the Kikihia-Maoricicada-Rhodopsalta clade, the contemporaneous Amphipsalta-Notopsalta lineage contains four comparatively old (early branching) species that show only recent diversification. This indicates either a long period of stasis with no speciation, or one or more bouts of extinction that have pruned the radiation. Within Amphipsalta-Notopsalta, greater population structure is found in dry-open-habitat species versus forest specialists. We attribute this difference to the fact that NZ lowland forests were repeatedly reduced in extent during glacial periods, while steep, open habitats likely became more available during late Pleistocene uplift. [ABSTRACT FROM AUTHOR]

Two regions of the mitochondrial genome (cytochrome oxidase I and ATPase 8-ATPase 6) were used to examine the population genetic structure of New Zealand's endemic abalone ( Haliotis iris). Samples were collected from 28 locations around New Zealand between January 2005 and February 2008. At least four phylogeographic breaks were present and occurred across the Chatham rise, in the western Cook Strait region, along the southeast coast of the South Island, and at East Cape in the North Island. Gene flow across the Chatham rise is probably limited due to infrequent dispersal across large geographic distances (~850 km), while factors limiting gene flow around the North and South Islands are less clear, and understanding these may require intense temporal and spatial sampling in complex hydrographic regions. High genetic diversity and weak genetic structure may be a general feature of abalone potentially reflecting large and/or ancient populations. [ABSTRACT FROM AUTHOR]

Abstract: The distributions of the native crab Ovalipes catharus and the invasive species Charybdis japonica within New Zealand shores may be defined by thermal tolerance. Doppler ultrasound showed that with increasing temperature O. catharus and C. japonica raised their heart rates (p ≤0.05). However, C. japonica showed greater plasticity in heart beat duration, or contraction rate with increasing temperature, while O. catharus was more inclined to increase heart rate, and already had a shorter more rapid contraction at 19°C. Saponin permeabilized heart fibres enabled tests of mitochondrial function in situ and showed that Leak-I respirational flux was highest for O. catharus at all temperatures. C. japonica showed a greater inner mitochondrial membrane integrity which suggests tighter coupling of oxidative phosphorylation. Although Complex I lost function on exposure to 30°C in both species, this occurred more rapidly in O. catharus. Complex II function remains stable at high temperature in both species. O. catharus had higher cytochrome c oxidase (CCO) flux at all temperatures compared to C. japonica indicating elevated concentrations of CCO in O. catharus. The scope to increase CCO flux was greater in the more stenothermal O. catharus than in C. japonica. Overall, this study shows substantial differences in heart function and mitochondria between crab species and provides evidence that mitochondrial integrity may limit species survival and potentially future distributions. [ABSTRACT FROM AUTHOR]

New Zealand's extinct flightless moa radiated rapidly into a large number of morphologically diverse species, which produced an equally large range of egg morphologies. The exact number of moa species, as well as the characteristics of the eggs they laid, remains contentious. Moreover, like most extinct species, we understand little about their nesting and incubation habits. We used a modified ancient DNA extraction procedure to recover exogenous mitochondrial and nuclear DNA from the inside and outside surfaces of moa eggs. We used sequences from the inside of 69 eggshells to directly assign these remains to seven of the 10 currently recognized moa species. In addition we were able to assign, to the species level, six of the rare reconstructed "whole" eggs. These molecular results enabled us to identify two distinct lineages within the genus Euryapteryx. Members of these lineages differed in eggshell thickness, with one lineage being characterized by a relatively thin eggshell. Unexpectedly, several thin-shelled eggs were also shown to belong to the heaviest moa of the genera Dinornis, Euryapteryx and Emeus, making these, to our knowledge, the most fragile of all avian eggs measured to date. Moreover, sex-specific DNA recovered from the outer surfaces of eggshells belonging to species of Dinornis and Euryapteryx suggest that these very thin eggs were likely to have been incubated by the lighter males. The thin nature of the eggshells of these larger species of moa, even if incubated by the male, suggests that egg breakage in these species would have been common if the typical contact method of avian egg incubation was used. [ABSTRACT FROM AUTHOR]

Members of the spider genus Amaurobioides are restricted to the spray zone of rocky marine coasts, where they construct and hunt from silk retreats. Collecting for this study shows these spiders to be distributed around the entire New Zealand coast. A Templeton, Crandall, and Sing (TCS) analysis of the ND1 mitochondrial gene places specimens from the North Island and the northern half of the South Island into a group distinct from Amaurobioides maritima O.P.-Cambridge, 1883, which is restricted to the southern half of the South Island. Females of this northern group exhibit latitude- and temperature-related clines in body length, body mass, and residual index of condition, with larger individuals with greater indices of condition being found at cooler, southern sites. This size cline also appeared in a broader geographical analysis that included Amaurobioides piscator Hogg, 1909 from the sub-Antarctic Auckland and Campbell Islands. Thirteen ND1 haplotypes are represented in the northern group. Both independent contrast analyses and standard regressions of the mean body lengths and mean masses of these haplotypes, and the mean latitudes and temperatures of the sites where haplotypes were present, document a Bergmann's size cline, and provide evidence for an underlying genetic component. © 2010 The Linnean Society of London, Biological Journal of the Linnean Society, 2010, 101, 78–92. [ABSTRACT FROM AUTHOR]

Abstract: Purpose: The aim of the study was to investigate oxidative injury and apoptosis as the mechanisms underlying total parenteral nutrition (TPN)–associated liver dysfunction. Methods: Twenty New Zealand rabbits (2 weeks old) were divided into 2 groups as follows: 10 in the control group (maternal feed) and 10 in the TPN group. The rabbits in the TPN group received continuous PN infusion through a silastic catheter inserted in the right jugular vein. Results: After 10 days of treatment, the serum levels of total bilirubin and bile acid were significantly higher in the TPN group than in the control group (P < .01, respectively). The light microscopic findings in the TPN rabbits included inflammatory cell infiltration and hepatic steatosis. Electron microscopy showed change in the cytosolic vacuoles and rare microvilli in the microbile duct. Moreover, 10 days of treatment resulted in an inhibition of the superoxide dismutase (SOD) activity in hepatocytes, an increase of the malondialdehyde level, a significant increase in cytochrome c release from the mitochondria, a significant increase in caspase 3 activity, and increased apoptosis (P < .01, individually). Conclusions: Oxidative damage may be one of the essential mechanisms of TPN-associated liver dysfunction. Moreover, mitochondria-initiated apoptosis triggered by oxidative damage may play an important role in this process. [Copyright &y& Elsevier]

The identification of demographically independent populations and the recognition of management units have been greatly facilitated by the continuing advances in genetic tools. Managements units now play a key role in short-term conservation management programmes of declining species, but their importance in expanding populations receives comparatively little attention. The endangered yellow-eyed penguin ( Megadyptes antipodes) expanded its range from the subantarctic to New Zealand's South Island a few hundred years ago and this new population now represents almost half of the species’ total census size. This dramatic expansion attests to M. antipodes’ high dispersal abilities and suggests the species is likely to constitute a single demographic population. Here we test this hypothesis of panmixia by investigating genetic differentiation and levels of gene flow among penguin breeding areas using 12 autosomal microsatellite loci along with mitochondrial control region sequence analyses for 350 individuals. Contrary to our hypothesis, however, the analyses reveal two genetically and geographically distinct assemblages: South Island vs. subantarctic populations. Using assignment tests, we recognize just two first-generation migrants between these populations (corresponding to a migration rate of < 2%), indicating that ongoing levels of long-distance migration are low. Furthermore, the South Island population has low genetic variability compared to the subantarctic population. These results suggest that the South Island population was founded by only a small number of individuals, and that subsequent levels of gene flow have remained low. The demographic independence of the two populations warrants their designation as distinct management units and conservation efforts should be adjusted accordingly to protect both populations. [ABSTRACT FROM AUTHOR]

Understanding the biological significance of Pleistocene glaciations requires knowledge of the nature and extent of habitat refugia during glacial maxima. An opportunity to examine evidence of glacial forest refugia in a maritime, Southern Hemisphere setting is found in New Zealand, where the extent of Pleistocene forests remains controversial. We used the mitochondrial phylogeography of a forest-edge cicada ( Kikihia subalpina) to test the hypothesis that populations of this species survived throughout South Island during the Last Glacial Maximum. We also compared mitochondrial DNA phylogeographic patterns with male song patterns that suggest allopatric divergence across Cook Strait. Cytochrome oxidase I and II sequences were analyzed using network analysis, maximum-likelihood phylogenetic estimation, Bayesian dating and Bayesian skyline plots. K. subalpina haplotypes from North Island and South Island form monophyletic clades that are concordant with song patterns. Song divergence corresponds to approximately 2% genetic divergence, and Bayesian dating suggests that the North Island and South Island population-lineages became isolated around 761 000 yearsbp. Almost all South Island genetic variation is found in the north of the island, consistent with refugia in Marlborough Sounds, central Nelson and northwest Nelson. All central and southern South Island and Stewart Island haplotypes are extremely similar to northern South Island haplotypes, a ‘northern richness/southern purity’ pattern that mirrors genetic patterns observed in many Northern Hemisphere taxa. Proposed southern South Island forest habitat fragments may have been too small to sustain populations of K. subalpina, and/or they may have harboured ecological communities with no modern-day analogues. [ABSTRACT FROM AUTHOR]

The article presents a study which examines the movements of southern right whales (Eubalaena australis) between Australian and subantarctic New Zealand populations. Photo-identifications from Australian and subantarctic New Zealand ranges were compared. Three between-population movements, including two instances of females calving in each of two population-specific calving grounds were found. Limited movement is suggested by genetic evidence from analysis of mitochondrial DNA (mtDNA) sequences and haplotype frequencies.

Previously, we demonstrated that ischemia induces mitochondrial damage and dysfunction that persist throughout reperfusion and impact negatively on postischemic functional recovery and cellular viability. We hypothesized that viable respiration-competent mitochondria, isolated from tissue unaffected by ischemia and then injected into the ischemic zone just before reperfusion, would enhance postischemic functional recovery and limit infarct size. New Zealand White rabbits (n 52) were subjected to 30 mm of equilibrium and 30 mm of regional ischemia (RI) induced by snaring the left anterior descending coronary artery. At 29 mm of RI, the RI zone was injected with vehicle (sham control and RI vehicle) or vehicle containing mitochondria (7.7 X 10[sup6] ± 1.5 x 10[sup6]/ml) isolated from donor rabbit left ventricular tissue (RI-Mito). The snare was released at 30 mm of RI, and the hearts were reperfused for 120 mm. Our results show that left ventricular peak developed pressure and systolic shortening in RI-Mito hearts were significantly enhanced (P < 0.05 vs. RI-vehicle) to 75% and 83% of equilibrium value, respectively, at 120 mm of reperfusion compared with 57% and 62%, respectively, in RI-vehicle hearts. Creatine kinase-MB, cardiac troponin I, and infarct size relative to area at risk were significantly decreased in RI-Mito compared with RI-vehicle hearts (P < 0.05). Confocal microscopy showed that injected mitochondria were present and viable after 120 mm of reperfusion and were distributed from the epicardium to the subendocardium. These results demonstrate that viable respiration-competent mitochondria, isolated from tissue unaffected by ischemia and then injected into the ischemic zone just before reperfusion, significantly enhance postischemic functional recovery and cellular viability. [ABSTRACT FROM AUTHOR]

DNA analysis has identified two species of moa at an excavation site in Tiniroto, Gisborne. DNA extraction was attempted for 14 left and two right femora of which 10 samples yielded amplifiable DNA. The identity of the bones was determined by amplifying and sequencing DNA from a region of the mitochondrial genome designated hypervariable region 1 (HVR1). Comparison of the sequences with those from the GenBank database suggested that four of the 10 samples were from Dinornis novaezealandiae and six were from Anomalopteryx didiformis, a species found more often in caves. The sequence data from the Tiniroto samples group with other samples recovered from this part of New Zealand's North Island. DNA analysis may prove useful for the identification of moa species type and number for fragmented remains recovered from such sites. [ABSTRACT FROM AUTHOR]

Ca2+ is the main trigger for mitochondrial permeability transition pore opening, which plays a key role in cardiomyocyte death after ischemia-reperfusion. We investigated whether a reduced accumulation of mitochondrial Ca2+ might explain the attenuation of lethal reperfusion injury by postconditioning. Anesthetized New Zealand White rabbits underwent 30 min of ischemia, followed by either 240 (infarct size protocol) or 60 (mitochondria protocol) min of reperfusion. They received either no intervention (control), preconditioning by 5-min ischemia and 5-min reperfusion, postconditioning by four cycles of 1-min reperfusion and 1-min ischemia at the onset of reflow, or pharmacological inhibition of the transition pore opening by N-methyl-4-isoleucine-cyclosporin (NIM811; 5 mg/kg iv) given at reperfusion. Area at risk and infarct size were assessed by blue dye injection and triphenyltetrazolium chloride staining. Mitochondria were isolated from the risk region for measurement of 1) Ca2+ retention capacity (CRC), and 2) mitochondrial content of total (atomic absorption spectrometry) and ionized (potentiometric technique) calcium concentration. CRC averaged 0.73 ± 0.16 in control vs. 4.23 ± 0.17 μg Ca2+/mg proteins in shams (P < 0.05). Postconditioning, preconditioning, or NIM811 significantly increased CRC (P < 0.05 vs. control). In the control group, total and free mitochondrial calcium significantly increased to 2.39 ± 0.43 and 0.61 ± 0.10, respectively, vs. 1.42 ± 0.09 and 0.16 ± 0.01 p.g Ca2+/mg in sham (P < 0.05). Surprisingly, whereas total and ionized mitochondrial Ca2+ decreased in preconditioning, it significantly increased in postconditioning and NIM811 groups. These data suggest that retention of calcium within mitochondria may explain the decreased reperfusion injury in postconditioned (but not preconditioned) hearts. [ABSTRACT FROM AUTHOR]

Tectonic movement at the boundary of the Indo-Australian and Pacific Plates during the Miocene and Pliocene is recognized as a driving force for invertebrate speciation in New Zealand. Two endemic freshwater crayfish (koura) species, Paranephrops planifrons White 1842 and Paranephrops zealandicus White 1842, represent good model taxa to test geological hypotheses because, due to their low dispersal capacity and life history, geographical restriction of populations may be caused by vicariant processes. Analysis of a mitochondrial DNA marker (cytochrome oxidase subunit I) reveals not two, but three major koura lineages. Contrary to expectation, the cryptic West Coast group appears to be more closely related to P. zealandicus than to P. planifrons and has diverged earlier than the final development (Late Pleistocene) of Cook Strait. Our date estimates suggest that koura lineage diversification probably coincided with early to mid-Alpine orogeny in the mid-Pliocene. Estimates of node ages and the phylogenies are inconsistent with both ancient Oligocene and recent postglacial Pleistocene range expansion, but suggest central to north colonization of North Island and west to east movement in South Island during mid- to late Pliocene. Crypsis and paraphyly of the West Coast group suggest that morphological characters presently used to classify koura species could be misleading. [ABSTRACT FROM AUTHOR]

Trewick, S. A., Goldberg, J. & Morgan-Richards, M. (2005). Fewer species of Argosarchus and Clitarchus stick insects (Phasmida, Phasmatinae): evidence from nuclear and mitochondrial DNA sequence data. — Zoologica Scripta, **, ***–***. The systematics of three genera of New Zealand stick insect in the subfamily Phasmatinae were investigated in light of inconsistencies in morphological variability within and among species. We sequenced a region of the mitochondrial genome, cytochrome oxidase (COI & COII; 1448 bp), and a nuclear marker, the internal transcribed spacers (ITS1 & ITS2; 1804 bp) from 49 stick insects. Mitochondrial DNA sequence divergences among the three genera ( Argosarchus, Clitarchus and Acanthoxyla) were relatively high (∼12%) but the current taxonomy within genera was not supported. Within the three genera, low levels of genetic divergence were observed at both nuclear and mitochondrial loci, and phylogenetic analyses failed to support reciprocal monophyly of the two species in Argosarchus and Clitarchus. Sympatric individuals of Argosarchus spiniger and A. horridus were more closely related to each other than to members of their respective morphospecies from elsewhere. No males were found in the Chatham Island population of Argosarchus and although this population has been referred to as A. schauinslandi, genetic and morphological evidence does not support its distinction from mainland Argosarchus. Likewise, individuals identified as Clitarchus tuberculatus were genetically identical, or most similar to, C. hookeri from the same or adjacent sites rather then grouping with the stick insects they were morphologically most similar to. Lack of spatial, behavioural or ecological evidence concordant with the described species A. spiniger, A. schauinslandi and C. tuberculatus leads us to infer that these species are synonymies of A. horridus and C. hookeri respectively. We conclude that Argosarchus and Clitarchus have each been over-split and actually consist of a single morphologically polymorphic, facultative parthenogenetic species. The genus Acanthoxyla with eight described species also has low levels of genetic divergence, similar to those found in Argosarchus and Clitarchus. A possible hybrid origin of Acanthoxyla involving its sister genus Clitarchus is implied by sharing of ITS sequence variants, but further sampling is needed before the species status of these obligate parthenogenetic lineages can be resolved. In contrast to some New Zealand Orthoptera, the Phasmatinae show little genetic variation suggesting coalescence in recent times, possibly reflecting lineage sorting in the Pleistocene. [ABSTRACT FROM AUTHOR]

Molecular markers belonging to three different genomes, mitochondrial (cox2-3 spacer), plastid (RUBISCO spacer), and nuclear (internal transcribed spacer 1), were used to compare Gracilaria chilensis samples collected along the Chilean coast with samples ascribed to G. chilensis from the West Pacific Ocean (New Zealand and Australia). Our data are in agreement with previous studies suggesting two sibling species currently going under the name G. chilensis that co-occur in New Zealand. One of these, a New Zealand sample previously examined by Bird and others in 1990, is conspecific with G. chilensis from Chile. Finally, our results demonstrate clearly that most of the sequences in GenBank reported as G. chilensis are based on misidentified material. [ABSTRACT FROM AUTHOR]

Molecular systematic studies provide evidence for three new species of Bathymodiolus-like hydrothermal vent mussels (Bivalvia: Mytilidae) from relatively shallow waters (depth less than 750 m) associated with the Kermadec Arc off northern New Zealand. Mitochondrial COI sequences from the three putative new species differed substantially from those of other known bathymodiolin species from the Pacific and Indian Oceans. Population genetic analysis of one of these species (Bathymodiolus new species NZ-1) revealed heterogeneity in allozyme gene frequencies between samples collected from two seamounts about 50 km apart. Factors that might contribute to genetic differentiation between neighbouring seamounts are discussed. [ABSTRACT FROM AUTHOR]

An intraspecific phylogeny was established for the New Zealand short-tailed bat Mystacina tuberculata using a 2,878-bp sequence alignment from multiple mitochondrial genes (control region, ND2, 12S ribosomal RNA [rRNA], 16S rRNA, and tRNA). The inferred phylogeny comprises six lineages, with estimated divergences extending back between 0.93 and 0.68 million years to the middle Pleistocene. The lineages do not correspond to the existing subspecific taxonomy. Although multiple lineages occur sympatrically in many populations, the lineages are geographically structured. This structure has persisted despite repeated cycles of range expansion and contraction in response to climatic oscillations and catastrophic volcanic eruptions. The distribution of lineages among populations in central North Island indicates that a hybrid zone was formed by simultaneous colonization from single-lineage source populations inhabiting remote forest refugia. The observed pattern is not typical of microbats, which because of their high mobility generally exhibit low levels of genetic differentiation and geographic structure over continental ranges. Although lineages of M. tuberculata occur sympatrically in many populations, genetic distances between them are sufficiently large to suggest that they may be considered evolutionary significant units or taxonomic subspecies. [Microchiroptera; homoplasy; control region; Pleistocene divergence; sympatric lineages; phylogeographic structure.] [ABSTRACT FROM AUTHOR]

Abstract Short-tailed bats Mystacina tuberculata were widespread throughout the forest that dominated prehuman New Zealand, but extensive deforestation has restricted them to scattered populations in forest fragments. In a previous study, the species’ intraspecific phylogeny was investigated using multiple mitochondrial gene sequences. Six phylogroups were identified with estimated divergences of 0.93–0.68 Ma. In the current study, the phylogeographical structure and demographic history of the phylogroups were investigated using control region sequences modified by removing homoplasic sites. Phylogeographical structure in the North Island was generally consistent with an isolation-by-distance dispersal model. Coalescent-based analyses (i.e. mismatch distributions, skyline plots, lineage dispersal analysis and nested clade analysis) indicated that the three phylogroups found in central and southern North Island expanded before the last glacial maximum, presumably during interstadials when Nothofagus forest was most extensive. Genetic structure within a central North Island hybrid zone was consistent with range expansion from separate refugia following reforestation after catastrophic volcanic eruptions. Phylogeographical structure in the South Island was consistent with southern populations originating during rapid southward range expansion from refugia in northern South Island following postglacial reforestation of the South Island 10–9 kya. [ABSTRACT FROM AUTHOR]

The Argentine stem weevil is a serious pest of pasture and other graminaceous crops in New Zealand. Fifteen populations from South America, New Zealand and Australia were examined in an effort to determine the geographical origin of the species in New Zealand. Our previously reported RAPD analysis of these populations (Williams et al., 1994) revealed that the source of the pest was the Rio de la Plata on the east coast of South America. As a second approach to examining genetic variation, RFLP analysis of the mitochondrial genome, using the digoxigenin-labelled boll weevil mitochondrial genome as a probe, was also performed. The mitochondrial analysis revealed that the species possesses an unusually large mitochondrial genome of 32 kb, which exhibits extremely low levels of polymorphism both in the introduced and native populations. This low variation is in contrast with the informative level of inter- and intrapopulation variation revealed by RAPD. [ABSTRACT FROM AUTHOR]

• Sevoflurane and propofol have previously been implicated in myocardial protection. • In a non-conditioning protocol only sevoflurane reduced myocardial ischemic injury. • Sevoflurane as opposed to propofol anesthesia preserved mitochondrial respiration. • Propofol anesthesia impeded mitochondrial function during myocardial ischemia. • A higher portion of complex I was in its deactive form during ischemia and sevoflurane anesthesia. Pharmacological interventions reducing myocardial ischemia and reperfusion (I/R) injury include the administration of anesthetics. Both sevoflurane as well as propofol have been shown to elicit cardiac protection via distinct molecular mechanisms. We investigated the hypothesis that sevoflurane in contrary to propofol anesthesia elicits cardiac protection against I/R-injury via mitochondrial mechanisms of disease. Male New Zealand white rabbits (n = 42) were subjected 30 min of coronary artery occlusion followed by 3 h of reperfusion. After induction with pentobarbital, the animals either received sevoflurane or propofol to maintain general anesthesia. Infarct size was determined gravimetrically after triphenyltetrazolium chlorid-staining. Cardiac mitochondria were isolated and mitochondrial oxygen consumption was measured using a Clark electrode. Mitochondrial respiratory chain complex activities (I-IV) were analyzed utilizing specific assays. Data are mean ± SD. Sevoflurane anesthesia significantly decreased the resulting myocardial infarct size compared to propofol anesthesia (p = 0.0275 vs. propofol). Mitochondria from animals receiving propofol anesthesia showed a significantly reduced mitochondrial respiratory control ratio (p = 0.01909 vs. sham) and impaired activities of respiratory complex I (p = 0.0147 vs. sham; p < 0.01 vs. sevoflurane) as well as respiratory complex IV (p = 0.0181 vs. sham). Mitochondrial dysfunction was absent in sevoflurane anesthesized animals. Furthermore, a significantly higher portion of complex I was found to be in its deactive form during I/R-injury in animals receiving sevoflurane anesthesia (p = 0.0123 vs. propofol). Sevoflurane as opposed to propofol anesthesia preserved mitochondrial respiration and elicited cardiac protection against I/R-injury. [ABSTRACT FROM AUTHOR]

The article reports on the Horizons of Insight, the National Institute of Research Excellence for Maori Development and Advancement in New Zealand. The graduate students on center grants give an update on their work. One of the center's high achievers is Melanie Cheung whose project on Huntington's disease proved that her hypothesis that faulty mitochondria is a key part of the puzzle. After engaging the tribe in her research genetic counselors are working with the Maori communities for the first time. The efforts of Cheung in bridging the cultures are ongoing.

Partial sequences of mitochondrial ND2 (NADH dehydrogenase subunit 2), 12S rRNA and 16S rRNA genes were obtained from four Australian abalone species and two New Zealand abalone species. Phylogenetic analyses were conducted using the parsimony method. The resulting phylogenetic trees revealed two clades, one consisting of four Australian abalone species and the other containing two New Zealand abalone species. The possible application of ND2, 12S and 16S sequence for the inves-tigation of abalone poaching is discussed. [ABSTRACT FROM AUTHOR]