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Water chemistry is important for the maintenance of wetland structure and function. Interpreting ecological patterns in a wetland system therefore requires an in-depth understanding of the water chemistry of that system. We investigated the spatial distribution of chemical solutes both in soil pore water and surface water, along island-floodplain-channel hydrological gradients in seasonally and permanently inundated habitats between major regions in the Okavango Delta, Botswana. Our results show that major cations (Ca, Na, Mg, and K), dissolved silica (DSi), dissolved boron (B), dissolved organic matter (DOC) and electrical conductivity increased significantly, at p ≤ 0.05, from the inlet of the Delta (the Panhandle) to the distal downstream reaches, suggesting the influence of evapoconcentration. Concentrations of dissolved Fe, Al, Zn, Cu, and Mn significantly decreased, at p ≤ 0.05, from the inflow of the Delta to the distal reaches. Only Na, Mn, Fe, Al, and DOC showed significant differences, at p ≤ 0.05, along the local floodplain-channel hydrological gradients, with higher solute concentrations in the floodplains than the channels. Solute concentrations in soil water exhibited similar distribution patterns to those in surface water, but concentrations were higher in soil water. Based on the results, we hypothesise that floodplain emergent vegetation and the channel-fringing vegetation in the Panhandle (a faultbounded entry trough to the Delta) and the permanently inundated eco-region together influence the cycling of solutes that enter the Delta through uptake. [ABSTRACT FROM AUTHOR]