23 results on '"Berumen, Michael L."'
Search Results
2. Spatial patterns of cryptobenthic coral-reef fishes in the Red Sea.
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Coker, Darren J., DiBattista, Joseph D., Sinclair-Taylor, Tane H., and Berumen, Michael L.
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CORAL reef fishes ,SPATIAL ecology ,FISH diversity ,GENETIC barcoding - Abstract
Surveys to document coral-reef fish assemblages are often limited to visually conspicuous species, thus excluding a significant proportion of the biodiversity. Through standardized collections of cryptobenthic reef fishes in the central and southern Red Sea, a total of 238 species and operational taxonomic units (OTUs) from 35 families were collected. Abundance and species richness increased by 60 and 30%, respectively, from north to south, and fish community composition differed between the two regions and with proximity to shore in the central region. Models suggest regional influences in fish communities, with latitudinal patterns influenced by key coral groups (
Acropora , Pocilloporidae) and variation in environmental parameters (chlorophylla , sea surface temperature, salinity). This study illustrates the limited taxonomic resolution in this group and in this region, and the need to expand baseline data for this under-studied assemblage. To assist in advancing this initiative, we have produced a catalogue of specimens, archived photographs, and established a DNA sequence library based on cytochrome-c oxidase subunit-I barcodes for all OTUs. [ABSTRACT FROM AUTHOR]- Published
- 2018
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3. Draft genome of an iconic Red Sea reef fish, the blacktail butterflyfish (<italic>Chaetodon austriacus</italic>): current status and its characteristics.
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DiBattista, Joseph D., Wang, Xin, Saenz‐Agudelo, Pablo, Piatek, Marek J., Aranda, Manuel, and Berumen, Michael L.
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CORAL reef fishes ,CHAETODON ,FISH genomes ,BIOGEOGRAPHY ,NUCLEOTIDE sequencing ,FISH habitats - Abstract
Abstract: Butterflyfish are among the most iconic of the coral reef fishes and represent a model system to study general questions of biogeography, evolution and population genetics. We assembled and annotated the genome sequence of the blacktail butterflyfish (
Chaetodon austriacus ), an Arabian region endemic species that is reliant on coral reefs for food and shelter. Using available bony fish (superclass Osteichthyes) genomes as a reference, a total of 28 926 high‐quality protein‐coding genes were predicted from 13 967 assembled scaffolds. The quality and completeness of the draft genome ofC. austriacus suggest that it has the potential to serve as a resource for studies on the co‐evolution of reef fish adaptations to the unique Red Sea environment, as well as a comparison of gene sequences between closely related congeneric species of butterflyfish distributed more broadly across the tropical Indo‐Pacific. [ABSTRACT FROM AUTHOR]- Published
- 2018
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4. Astrocoryne cabela, gen. nov. et sp. nov. (Hydrozoa : Sphaerocorynidae), a new sponge-associated hydrozoan.
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Maggioni, Davide, Galli, Paolo, Berumen, Michael L., Arrigoni, Roberto, Seveso, Davide, and Montano, Simone
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HYDROZOA ,ATHECATE hydroids ,SCIENTIFIC discoveries - Published
- 2017
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5. Introduction to virtual issue on Red Sea and Western Indian Ocean biogeography.
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Berumen, Michael L., DiBattista, Joseph D., and Rocha, Luiz A.
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BIOGEOGRAPHY - Abstract
An introduction to a virtual issue on Red Sea and Western Indian Ocean biogeography is presented which includes influential studies that present novel data, those that apply methods to synthesize patterns, and some that utilize newer genetic methods.
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- 2017
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6. Exploring the larval fish community of the central Red Sea with an integrated morphological and molecular approach.
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Isari, Stamatina, Pearman, John K., Casas, Laura, Michell, Craig T., Curdia, Joao, Berumen, Michael L., and Irigoien, Xabier
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MOLECULAR dynamics ,CYTOCHROME oxidase ,MESOPELAGIC zone ,MARINE habitats ,COMMERCE - Abstract
An important aspect of population dynamics for coral reef fishes is the input of new individuals from the pelagic larval pool. However, the high biodiversity and the difficulty of identifying larvae of closely related species represent obstacles to more fully understanding these populations. In this study, we combined morphology and genetic barcoding (Cytochrome Oxidase I gene) to characterize the seasonal patterns of the larval fish community at two sites in close proximity to coral reefs in the central-north Red Sea: one shallower inshore location (50 m depth) and a nearby site located in deeper and more offshore waters (~ 500 m depth). Fish larvae were collected using oblique tows of a 60 cm-bongo net (500 μm mesh size) every month for one year (2013). During the warmer period of the year (June-November), the larval fish stock was comparable between sampling sites. However, during the colder months, abundances were higher in the inshore than in the offshore waters. Taxonomic composition and temporal variation of community structure differed notably between sites, potentially reflecting habitat differences, reproductive patterns of adults, and/or advective processes in the area. Eleven out of a total of 62 recorded families comprised 69–94% of the fish larval community, depending on sampling site and month. Richness of taxa was notably higher in the inshore station compared to the offshore, particularly during the colder period of the year and especially for the gobiids and apogonids. Two mesopelagic taxa (Vinciguerria sp. and Benthosema spp.) comprised an important component of the larval community at the deeper site with only a small and sporadic occurrence in the shallower inshore waters. Our data provide an important baseline reference for the larval fish communities of the central Red Sea, representing the first such study from Saudi Arabian waters. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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7. Productivity and sea surface temperature are correlated with the pelagic larval duration of damselfishes in the Red Sea.
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Robitzch, Vanessa S.N., Lozano-Cortés, Diego, Kandler, Nora M., Salas, Eva, and Berumen, Michael L.
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POMACENTRIDAE ,FISH larvae ,OCEAN temperature ,PELAGIC fishes - Abstract
We examined the variation of pelagic larval durations (PLDs) among three damselfishes, Dascyllus aruanus , D. marginatus , and D. trimaculatus , which live under the influence of an environmental gradient in the Red Sea. PLDs were significantly correlated with latitude, sea surface temperature (SST), and primary production (CHLA; chlorophyll a concentrations). We find a consistent decrease in PLDs with increasing SST and primary production (CHLA) towards the southern Red Sea among all species. This trend is likely related to higher food availability and increased metabolic rates in that region. We suggest that food availability is a potentially stronger driver of variation in PLD than temperature, especially in highly oligotrophic regions. Additionally, variations in PLDs were particularly high among specimens of D. marginatus , suggesting a stronger response to local environmental differences for endemic species. We also report the first average PLD for this species over a broad geographic range (19.82 ± 2.92 days). [ABSTRACT FROM AUTHOR]
- Published
- 2016
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8. Molecular biodiversity of Red Sea demosponges.
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Erpenbeck, Dirk, Voigt, Oliver, Al-Aidaroos, Ali M., Berumen, Michael L., Büttner, Gabriele, Catania, Daniela, Guirguis, Adel Naguib, Paulay, Gustav, Schätzle, Simone, and Wörheide, Gert
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BIODIVERSITY ,DEMOSPONGIAE ,CORAL reef ecology ,MOLECULAR genetics - Abstract
Sponges are important constituents of coral reef ecosystems, including those around the Arabian Peninsula. Despite their importance, our knowledge on demosponge diversity in this area is insufficient to recognize, for example, faunal changes caused by anthropogenic disturbances. We here report the first assessment of demosponge molecular biodiversity from Arabia, with focus on the Saudi Arabian Red Sea, based on mitochondrial and nuclear ribosomal molecular markers gathered in the framework of the Sponge Barcoding Project. We use a rapid molecular screening approach on Arabian demosponge collections and analyze results in comparison against published material in terms of biodiversity. We use a variable region of 28S rDNA, applied for the first time in the assessment of demosponge molecular diversity. Our data constitutes a solid foundation for a future more comprehensive understanding of sponge biodiversity of the Red Sea and adjacent waters. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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9. Colony size-frequency distribution of pocilloporid juvenile corals along a natural environmental gradient in the Red Sea.
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Lozano-Cortés, Diego F. and Berumen, Michael L.
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CORAL communities ,SPECIES distribution ,TURBIDITY ,PARROTFISHES - Abstract
Coral colony size-frequency distributions can be used to assess population responses to local environmental conditions and disturbances. In this study, we surveyed juvenile pocilloporids, herbivorous fish densities, and algal cover in the central and southern Saudi Arabian Red Sea. We sampled nine reefs with different disturbance histories along a north–south natural gradient of physicochemical conditions (higher salinity and wider temperature fluctuations in the north, and higher turbidity and productivity in the south). Since coral populations with negatively skewed size-frequency distributions have been associated with unfavorable environmental conditions, we expected to find more negative distributions in the southern Red Sea, where corals are potentially experiencing suboptimal conditions. Although juvenile coral and parrotfish densities differed significantly between the two regions, mean colony size and size-frequency distributions did not. Results suggest that pocilloporid colony size-frequency distribution may not be an accurate indicator of differences in biological or oceanographic conditions in the Red Sea. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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10. Homogeneity of coral reef communities across 8 degrees of latitude in the Saudi Arabian Red Sea.
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Roberts, May B., Jones, Geoffrey P., McCormick, Mark I., Munday, Philip L., Neale, Stephen, Thorrold, Simon, Robitzch, Vanessa S.N., and Berumen, Michael L.
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CORAL communities ,BIOGEOGRAPHY ,FISH diversity ,BENTHIC animals - Abstract
Coral reef communities between 26.8°N and 18.6°N latitude in the Saudi Arabian Red Sea were surveyed to provide baseline data and an assessment of fine-scale biogeography of communities in this region. Forty reefs along 1100 km of coastline were surveyed using depth-stratified visual transects of fish and benthic communities. Fish abundance and benthic cover data were analyzed using multivariate approaches to investigate whether coral reef communities differed with latitude. A total of 215 fish species and 90 benthic categories were recorded on the surveys. There were no significant differences among locations in fish abundance, species richness, or among several diversity indices. Despite known environmental gradients within the Red Sea, the communities remained surprisingly similar. The communities do, however, exhibit subtle changes across this span of reefs that likely reflect the constrained distributions of several species of reef fish and benthic fauna. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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11. Green Fluorescence of Cytaeis Hydroids Living in Association with Nassarius Gastropods in the Red Sea.
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Prudkovsky, Andrey A., Ivanenko, Viatcheslav N., Nikitin, Mikhail A., Lukyanov, Konstantin A., Belousova, Anna, Reimer, James D., and Berumen, Michael L.
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HYDROZOA ,NASSARIUS ,GREEN fluorescent protein ,ANIMAL diversity ,COLONIAL animals (Marine invertebrates) - Abstract
Green Fluorescent Proteins (GFPs) have been reported from a wide diversity of medusae, but only a few observations of green fluorescence have been reported for hydroid colonies. In this study, we report on fluorescence displayed by hydroid polyps of the genus Cytaeis Eschscholtz, 1829 (Hydrozoa: Anthoathecata: Filifera) found at night time in the southern Red Sea (Saudi Arabia) living on shells of the gastropod Nassarius margaritifer (Dunker, 1847) (Neogastropoda: Buccinoidea: Nassariidae). We examined the fluorescence of these polyps and compare with previously reported data. Intensive green fluorescence with a spectral peak at 518 nm was detected in the hypostome of the Cytaeis polyps, unlike in previous reports that reported fluorescence either in the basal parts of polyps or in other locations on hydroid colonies. These results suggest that fluorescence may be widespread not only in medusae, but also in polyps, and also suggests that the patterns of fluorescence localization can vary in closely related species. The fluorescence of polyps may be potentially useful for field identification of cryptic species and study of geographical distributions of such hydroids and their hosts. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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12. On the origin of endemic species in the Red Sea.
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DiBattista, Joseph D., Howard Choat, J., Gaither, Michelle R., Hobbs, Jean‐Paul A., Lozano‐Cortés, Diego F., Myers, Robert F., Paulay, Gustav, Rocha, Luiz A., Toonen, Robert J., Westneat, Mark W., and Berumen, Michael L.
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ENDEMIC animals ,BIODIVERSITY ,BIOGEOGRAPHY ,PALEOCLIMATOLOGY - Abstract
Aim The geological and palaeo-climatic forces that produced the unique biodiversity in the Red Sea are a subject of vigorous debate. Here, we review evidence for and against the hypotheses that: (1) Red Sea fauna was extirpated during glacial cycles of the Pleistocene and (2) coral reef fauna found refuge within or just outside the Red Sea during low sea level stands when conditions were inhospitable. Location Red Sea and Western Indian Ocean. Methods We review the literature on palaeontological, geological, biological and genetic evidence that allow us to explore competing hypotheses on the origins and maintenance of shallow-water reef fauna in the Red Sea. Results Palaeontological (microfossil) evidence indicates that some areas of the central Red Sea were devoid of most plankton during low sea level stands due to hypersaline conditions caused by almost complete isolation from the Indian Ocean. However, two areas may have retained conditions adequate for survival: the Gulf of Aqaba and the southern Red Sea. In addition to isolation within the Red Sea, which separated the northern and southern faunas, a strong barrier may also operate in the region: the cold, nutrient-rich water upwelling at the boundary of the Gulf of Aden and the Arabian Sea. Biological data are either inconclusive or support these putative barriers and refugia, but no data set, that we know of rejects them. Genetic evidence suggests that many endemic lineages diverged from their Indian Ocean counterparts long before the most recent glaciations and/or are restricted to narrow areas, especially in the northern Red Sea. Main conclusions High endemism observed in the Red Sea and Gulf of Aden appears to have multiple origins. A cold, nutrient-rich water barrier separates the Gulf of Aden from the rest of the Arabian Sea, whereas a narrow strait separates the Red Sea from the Gulf of Aden, each providing potential isolating barriers. Additional barriers may arise from environmental gradients, circulation patterns and the constriction at the mouth of the Gulf of Aqaba. Endemics that evolved within the Red Sea basin had to survive glacial cycles in relatively low salinity refugia. It therefore appears that the unique conditions in the Red Sea, in addition to those characteristics of the Arabian Peninsula region as a whole, drive the divergence of populations via a combination of isolation and selection. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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13. Cyphastrea kausti sp. n. (Cnidaria, Anthozoa, Scleractinia), a new species of reef coral from the Red Sea.
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Bouwmeester, Jessica, Benzoni, Francesca, Baird, Andrew H., and Berumen, Michael L.
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SCLERACTINIA ,CORALS ,ANTHOZOA ,ZOANTHARIA - Abstract
A new scleractinian coral species, Cyphastrea kausti sp. n., is described from 13 specimens from the Red Sea. It is characterised by the presence of eight primary septa, unlike the other species of the genus, which have six, ten or 12 primary septa. The new species has morphological affinities with Cyphastrea microphthalma, from which it can be distinguished by the lower number of septa (on average eight instead of ten), and smaller calices and corallites. This species was observed in the northern and central Red Sea and appears to be absent from the southern Red Sea. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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14. Fish market surveys indicate unsustainable elasmobranch fisheries in the Saudi Arabian Red Sea.
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Spaet, Julia L.Y. and Berumen, Michael L.
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FISH industry , *CHONDRICHTHYES , *FISH populations - Abstract
Elasmobranch populations worldwide are severely threatened due to overexploited and unregulated fisheries. Despite the fact that sharks and rays are captured in fisheries operating along the Red Sea coast of the Kingdom of Saudi Arabia (KSA), information on any aspects of these fisheries are very limited. Here we document the structure, composition and biological characteristics of eastern Red Sea elasmobranch fisheries based on genetic identification and market survey data over an intensive two-year sampling period at the biggest Red Sea fish market in the KSA (Jeddah). Market surveys conducted two times per month between 2011 and 2013 revealed that 24 previously confirmed elasmobranch species for the Red Sea were landed by fishers and offered for sale. Genetic identification revealed two potentially undescribed guitarfish species as well as four batoid species not formerly reported from the Red Sea. Five coastal carcharhinid species dominated the landings— Carcharhinus sorrah , C. amblyrhynchos , C. falciformis , C. limbatus , Rhizoprionodon acutus , together comprising 73% numerically of the total catch. Targeted shark fisheries reportedly exist in shark nursery areas. Most elasmobranchs outside of these areas were reportedly landed as bycatch. Most strikingly, the large majority of landed elasmobranchs were immature males or females below their reported size of sexual maturity, which suggests potential for both growth and recruitment overfishing and emphasizes the urgent need to implement region-specific management and conservation strategies to avoid the loss of these critical predators. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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15. Pachyseris inattesa sp. n. (Cnidaria, Anthozoa, Scleractinia): a new reef coral species from the Red Sea and its phylogenetic relationships.
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Terraneo, Tullia I., Berumen, Michael L., Arrigoni, Roberto, Waheed, Zarinah, Bouwmeester, Jessica, Caragnano, Annalisa, Stefani, Fabrizio, and Benzoni, Francesca
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CORAL ecology , *SCLERACTINIA , *COMPARATIVE genetics , *SPECIES specificity , *PHYLOGENY , *TYPE specimens (Natural history) - Abstract
A new scleractinian coral species, Pachyseris inattesa sp. n., is described from the Red Sea. Despite a superficial resemblance with some species in the agariciid genus Leptoseris with which it has been previously confused, P. inattesa sp. n. has micro-morphological characters typical of the genus Pachyseris. This genus, once part of the Agariciidae, is comprised of five extant species and is widely distributed throughout the tropical Indo-Pacific. It is currently incertae sedis as a result of recent molecular analysis and appears to be closely related to the Euphylliidae. A molecular phylogenetic reconstruction including P. inattesa sp. n., the genus type species P. rugosa, and P. speciosa, all present in the Red Sea, was performed using the mitochondrial intergenic spacer between COI and 16S-rRNA. The results confirm that P. inattesa sp. n. is a monophyletic lineage closely related to the other Pachyseris species examined. [ABSTRACT FROM AUTHOR]
- Published
- 2014
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16. Movement Patterns of Juvenile Whale Sharks Tagged at an Aggregation Site in the Red Sea.
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Berumen, Michael L., Braun, Camrin D., Cochran, Jesse E. M., Skomal, Gregory B., and Thorrold, Simon R.
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WHALE shark , *BIOLOGICAL aggregation , *FISH ecology , *BODY size - Abstract
Conservation efforts aimed at the whale shark, Rhincodon typus, remain limited by a lack of basic information on most aspects of its ecology, including global population structure, population sizes and movement patterns. Here we report on the movements of 47 Red Sea whale sharks fitted with three types of satellite transmitting tags from 2009–2011. Most of these sharks were tagged at a single aggregation site near Al-Lith, on the central coast of the Saudi Arabian Red Sea. Individuals encountered at this site were all juveniles based on size estimates ranging from 2.5–7 m total length with a sex ratio of approximately 1∶1. All other known aggregation sites for juvenile whale sharks are dominated by males. Results from tagging efforts showed that most individuals remained in the southern Red Sea and that some sharks returned to the same location in subsequent years. Diving data were recorded by 37 tags, revealing frequent deep dives to at least 500 m and as deep as 1360 m. The unique temperature-depth profiles of the Red Sea confirmed that several whale sharks moved out of the Red Sea while tagged. The wide-ranging horizontal movements of these individuals highlight the need for multinational, cooperative efforts to conserve R. typus populations in the Red Sea and Indian Ocean. [ABSTRACT FROM AUTHOR]
- Published
- 2014
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17. Environmental gradients predict the genetic population structure of a coral reef fish in the Red Sea.
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Nanninga, Gerrit B., Saenz‐Agudelo, Pablo, Manica, Andrea, and Berumen, Michael L.
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CORAL reef fishes ,FISH population genetics ,BIOPHYSICS ,HABITATS ,MICROSATELLITE repeats - Abstract
The relatively recent fields of terrestrial landscape and marine seascape genetics seek to identify the influence of biophysical habitat features on the spatial genetic structure of populations or individuals. Over the last few years, there has been accumulating evidence for the effect of environmental heterogeneity on patterns of gene flow and connectivity in marine systems. Here, we investigate the population genetic patterns of an anemonefish, Amphiprion bicinctus, along the Saudi Arabian coast of the Red Sea. We collected nearly one thousand samples from 19 locations, spanning approximately 1500 km, and genotyped them at 38 microsatellite loci. Patterns of gene flow appeared to follow a stepping-stone model along the northern and central Red Sea, which was disrupted by a distinct genetic break at a latitude of approximately 19°N. The Red Sea is characterized by pronounced environmental gradients along its axis, roughly separating the northern and central from the southern basin. Using mean chlorophyll-a concentrations as a proxy for this gradient, we ran tests of isolation by distance ( IBD, R
2 = 0.52) and isolation by environment ( IBE, R2 = 0.64), as well as combined models using partial Mantel tests and multiple matrix regression with randomization ( MMRR). We found that genetic structure across our sampling sites may be best explained by a combined model of IBD and IBE (Mantel: R2 = 0.71, MMRR: R2 = 0.86). Our results highlight the potential key role of environmental patchiness in shaping patterns of gene flow in species with pelagic larval dispersal. We support growing calls for the integration of biophysical habitat characteristics into future studies of population genetic structure. [ABSTRACT FROM AUTHOR]- Published
- 2014
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18. After continents divide: comparative phylogeography of reef fishes from the Red Sea and Indian Ocean.
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DiBattista, Joseph D., Berumen, Michael L., Gaither, Michelle R., Rocha, Luiz A., Eble, Jeff A., Choat, J. Howard, Craig, Matthew T., Skillings, Derek J., Bowen, Brian W., and McClain, Craig
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PHYLOGEOGRAPHY , *REEF fishes , *BIODIVERSITY , *COMPARATIVE studies , *MARINE animals - Abstract
Aim The Red Sea is a biodiversity hotspot characterized by a unique marine fauna and high endemism. This sea began forming c. 24 million years ago with the separation of the African and Arabian plates, and has been characterized by periods of desiccation, hypersalinity and intermittent connection to the Indian Ocean. We aim to evaluate the impact of these events on the genetic architecture of the Red Sea reef fish fauna. Location Red Sea and Western Indian Ocean. Methods We surveyed seven reef fish species from the Red Sea and adjacent Indian Ocean using mitochondrial DNA cytochrome c oxidase subunit I and cytochrome b sequences. To assess genetic variation and evolutionary connectivity within and between these regions, we estimated haplotype diversity ( h) and nucleotide diversity (π), reconstructed phylogenetic relationships among haplotypes, and estimated gene flow and time of population separation using Bayesian coalescent-based methodology. Results Our analyses revealed a range of scenarios from shallow population structure to diagnostic differences that indicate evolutionary partitions and possible cryptic species. Conventional molecular clocks and coalescence analyses indicated time-frames for divergence between these bodies of water ranging from 830,000 years to contemporary exchange or recent range expansion. Colonization routes were bidirectional, with some species moving from the Indian Ocean to the Red Sea compared with expansion out of the Red Sea for other species. Main conclusions We conclude that: (1) at least some Red Sea reef fauna survived multiple salinity crises; (2) endemism is higher in the Red Sea than previously reported; and (3) the Red Sea is an evolutionary incubator, occasionally contributing species to the adjacent Indian Ocean. The latter two conclusions - elevated endemism and species export - indicate a need for enhanced conservation priorities for the Red Sea. [ABSTRACT FROM AUTHOR]
- Published
- 2013
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19. Hyperdiverse Macrofauna Communities Associated with a Common Sponge, Stylissa carteri, Shift across Ecological Gradients in the Central Red Sea.
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Kandler, Nora M., Wooster, Michael K., Leray, Matthieu, Knowlton, Nancy, de Voogd, Nicole J., Paulay, Gustav, and Berumen, Michael L.
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SPONGES (Invertebrates) ,CORAL reef ecology ,GENETIC barcoding ,CYTOCHROME oxidase ,STARFISHES ,SYMBIOSIS - Abstract
Sponges act as important microhabitats in the marine environment and promote biodiversity by harboring a wide variety of macrofauna, but little is known about the magnitude and patterns of diversity of sponge-associated communities. This study uses DNA barcoding to examine the macrofaunal communities associated with Stylissa carteri in the central Saudi Arabian Red Sea, an understudied ecosystem with high biodiversity and endemism. In total, 146 operational taxonomic units (OTUs) were distinguished from 938 successfully-sequenced macrofauna individuals from 99 sponges. A significant difference was found in the macrofaunal community composition of S. carteri along a cross-shelf gradient using OTU abundance (Bray–Curtis dissimilarity index), with more amphipods associated with offshore sponges and more brittle stars and fishes associated with inshore sponges. The abundance of S. carteri also showed a gradient, increasing with proximity to shore. However, no significant differences in macrofaunal community composition or total macrofauna abundance were observed between exposed and sheltered sides of the reefs and there was no significant change in total macrofauna abundance along the inshore–offshore gradient. As climate change and ocean acidification continue to impact coral reef ecosystems, understanding the ecology of sponges and their role as microhabitats may become more important for understanding their full ramifications for biodiversity. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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20. Ongoing decline of shark populations in the Eastern Red Sea.
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Spaet, Julia L.Y., Nanninga, Gerrit B., and Berumen, Michael L.
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SHARKS , *WILDLIFE management , *CHONDRICHTHYES , *UNDERWATER cameras - Abstract
Information on the abundance and diversity of Red Sea elasmobranchs is notoriously scarce, even though sharks are among the most profitable fisheries of the region. Effective conservation would ideally entail baselines on pristine conditions, yet no such data is available for the Red Sea. To collect distribution and abundance data on Red Sea elasmobranchs, we conducted a dedicated longline and Baited Remote Underwater Video system (BRUVs) sampling program along the entire Red Sea coast of Saudi Arabia over the course of two years. Both survey techniques were opportunistically employed at central and southern Saudi Arabian (SA) Red Sea reef systems. In addition, BRUVs were employed in the northern SA Red Sea and at selected reef systems in Sudan. Shark catch per unit effort (CPUE) data for BRUVs and longline surveys were compared to published data from non-Red Sea reef systems. This comparison revealed CPUE estimates several orders of magnitude lower for both survey methods in the SA Red Sea compared to other reef systems around the world. Catch per unit effort values of BRUVs on Sudanese reefs on the contrary were within the range of estimates from various locations where sharks are considered common. We argue that decades of heavy fishing pressure on Red Sea marine resources has significantly altered the community structure of SA Red Sea reefs. There is an urgent need to establish effective management strategies for species of highest conservation concern. Our results have the potential to be used as a baseline, if such management strategies were to be established. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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21. Phytoplankton phenology indices in coral reef ecosystems: Application to ocean-color observations in the Red Sea.
- Author
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Racault, Marie-Fanny, Raitsos, Dionysios E., Berumen, Michael L., Brewin, Robert J.W., Platt, Trevor, Sathyendranath, Shubha, and Hoteit, Ibrahim
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PHYTOPLANKTON , *CORAL reefs & islands , *ECOSYSTEMS , *SOCIOECONOMICS , *REMOTE sensing - Abstract
Phytoplankton, at the base of the marine food web, represent a fundamental food source in coral reef ecosystems. The timing (phenology) and magnitude of the phytoplankton biomass are major determinants of trophic interactions. The Red Sea is one of the warmest and most saline basins in the world, characterized by an arid tropical climate regulated by the monsoon. These extreme conditions are particularly challenging for marine life. Phytoplankton phenological indices provide objective and quantitative metrics to characterize phytoplankton seasonality. The indices i.e. timings of initiation, peak, termination and duration are estimated here using 15 years (1997–2012) of remote sensing ocean-color data from the European Space Agency (ESA) Climate Change Initiative project (OC-CCI) in the entire Red Sea basin. The OC-CCI product, comprising merged and bias-corrected observations from three independent ocean-color sensors (SeaWiFS, MODIS and MERIS), and processed using the POLYMER algorithm (MERIS period), shows a significant increase in chlorophyll data coverage, especially in the southern Red Sea during the months of summer NW monsoon. In open and reef-bound coastal waters, the performance of OC-CCI chlorophyll data is shown to be comparable with the performance of other standard chlorophyll products for the global oceans. These features have permitted us to investigate phytoplankton phenology in the entire Red Sea basin, and during both winter SE monsoon and summer NW monsoon periods. The phenological indices are estimated in the four open water provinces of the basin, and further examined at six coral reef complexes of particular socio-economic importance in the Red Sea, including Siyal Islands, Sharm El Sheikh, Al Wajh bank, Thuwal reefs, Al Lith reefs and Farasan Islands. Most of the open and deeper waters of the basin show an apparent higher chlorophyll concentration and longer duration of phytoplankton growth during the winter period (relative to the summer phytoplankton growth period). In contrast, most of the reef-bound coastal waters display equal or higher peak chlorophyll concentrations and equal or longer duration of phytoplankton growth during the summer period (relative to the winter phytoplankton growth period). The ecological and biological significance of the phytoplankton seasonal characteristics are discussed in context of ecosystem state assessment, and particularly to support further understanding of the structure and functioning of coral reef ecosystems in the Red Sea. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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22. The prevalence of benthic dinoflagellates associated with ciguatera fish poisoning in the central Red Sea.
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Catania, Daniela, Richlen, Mindy L., Mak, Yim Ling, Morton, Steve L., Laban, Elizabeth H., Xu, Yixiao, Anderson, Donald M., Chan, Leo Lai, and Berumen, Michael L.
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CIGUATERA poisoning , *DINOFLAGELLATES , *FOOD chains , *ALGAL blooms - Abstract
This study confirms the presence of the toxigenic benthic dinoflagellates Gambierdiscus belizeanus and Ostreopsis spp. in the central Red Sea. To our knowledge, this is also the first report of these taxa in coastal waters of Saudi Arabia, indicating the potential occurrence of ciguatera fish poisoning (CFP) in that region. During field investigations carried out in 2012 and 2013, a total of 100 Turbinaria and Halimeda macroalgae samples were collected from coral reefs off the Saudi Arabian coast and examined for the presence of Gambierdiscus and Ostreopsis , two toxigenic dinoflagellate genera commonly observed in coral reef communities around the world. Both Gambierdiscus and Ostreopsis spp. were observed at low densities (<200 cells g −1 wet weight algae). Cell densities of Ostreopsis spp. were significantly higher than Gambierdiscus spp. at most of the sampling sites, and abundances of both genera were negatively correlated with seawater salinity. To assess the potential for ciguatoxicity in this region, several Gambierdiscus isolates were established in culture and examined for species identity and toxicity. All isolates were morphologically and molecularly identified as Gambierdiscus belizeanus. Toxicity analysis of two isolates using the mouse neuroblastoma cell-based assay for ciguatoxins (CTX) confirmed G. belizeanus as a CTX producer, with a maximum toxin content of 6.50 ± 1.14 × 10 −5 pg P-CTX-1 eq. cell −1 . Compared to Gambierdiscus isolates from other locations, these were low toxicity strains. The low Gambierdiscus densities observed along with their comparatively low toxin contents may explain why CFP is unidentified and unreported in this region. Nevertheless, the presence of these potentially toxigenic dinoflagellate species at multiple sites in the central Red Sea warrants future study on their possible effects on marine food webs and human health in this region. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
23. Regal phylogeography: Range-wide survey of the marine angelfish Pygoplites diacanthus reveals evolutionary partitions between the Red Sea, Indian Ocean, and Pacific Ocean.
- Author
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Coleman, Richard R., Eble, Jeffrey A., DiBattista, Joseph D., Rocha, Luiz A., Randall, John E., Berumen, Michael L., and Bowen, Brian W.
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GEOGRAPHICAL distribution of fishes , *FISH evolution , *FISHES , *MOLECULAR biology , *MARINE angelfishes - Abstract
The regal angelfish ( Pygoplites diacanthus ; family Pomacanthidae) occurs on reefs from the Red Sea to the central Pacific, with an Indian Ocean/Rea Sea color morph distinct from a Pacific Ocean morph. To assess population differentiation and evaluate the possibility of cryptic evolutionary partitions in this monotypic genus, we surveyed mtDNA cytochrome b and two nuclear introns (S7 and RAG2) in 547 individuals from 15 locations. Phylogeographic analyses revealed four mtDNA lineages ( d = 0.006–0.015) corresponding to the Pacific Ocean, the Red Sea, and two admixed lineages in the Indian Ocean, a pattern consistent with known biogeographic barriers. Christmas Island in the eastern Indian Ocean had both Indian and Pacific lineages. Both S7 and RAG2 showed strong population-level differentiation between the Red Sea, Indian Ocean, and Pacific Ocean ( Φ ST = 0.066–0.512). The only consistent population sub-structure within these three regions was at the Society Islands (French Polynesia), where surrounding oceanographic conditions may reinforce isolation. Coalescence analyses indicate the Pacific (1.7 Ma) as the oldest extant lineage followed by the Red Sea lineage (1.4 Ma). Results from a median-joining network suggest radiations of two lineages from the Red Sea that currently occupy the Indian Ocean (0.7–0.9 Ma). Persistence of a Red Sea lineage through Pleistocene glacial cycles suggests a long-term refuge in this region. The affiliation of Pacific and Red Sea populations, apparent in cytochrome b and S7 (but equivocal in RAG2) raises the hypothesis that the Indian Ocean was recolonized from the Red Sea, possibly more than once. Assessing the genetic architecture of this widespread monotypic genus reveals cryptic evolutionary diversity that merits subspecific recognition. We recommend P.d. diacanthus and P.d. flavescens for the Pacific and Indian Ocean/Red Sea forms. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
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