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Simple Summary: The marbled flounder (Pseudopleuronectes yokohamae) is a fish species with high commercial value in Korea and has been gaining attention as a new aquaculture target. To clarify the digestive physiology and feeding habits of the marbled flounder, this study conducted morphological, histological, and histochemical analyses of its digestive tract. In conclusion, the feeding habits of marbled flounder are close to those of carnivorous fish. In addition, we found that the marbled flounder has a stomach with a structure suitable for eating small amounts of hard food, and that most of its digestion takes place in the anterior intestine portion. Our study presents the histological and histochemical characteristics of the digestive tract of the marbled flounder, providing basic knowledge for both physiological and nutritional studies. This study investigated the morphological, histological, and histochemical characteristics of the digestive tract of the marbled flounder (Pseudopleuronectes yokohamae). The relative length of the gut of the marbled flounder digestive tract was 1.54 ± 0.10 (n = 20), and it had a simple stomach and 6–9 pyloric caeca. The mucosal folds of the marbled flounder digestive tract exhibited a general branched morphology. The thickness and mucosal fold length of the intestinal muscularis externa showed similar aspects in all areas. The thickness of the intestinal muscularis externa was the thickest in the posterior intestine portion, and the length of mucosal folds was the longest in the anterior intestine portion. It was indicated that food digested by gastric acid in the stomach moves to the anterior portion (including pyloric caeca) and mid portion of the intestine, ensuring effective stimulation of cholecystokinin (CCK)-producing cells. In addition, the distribution pattern of CCK-producing cells in the intestine was very similar to that of mucus-secreting goblet cells. The CCK-producing cells and goblet cells in the marbled flounder were well-adapted to promote optimal control of the digestive process. Based on the morphological and histochemical studies, it was concluded that the marbled flounder displays a digestive tract comparable to that of fish species with carnivorous habits. [ABSTRACT FROM AUTHOR]