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Buthidae family is a scorpion family distributed throughout the world, especially in North Africa. The individual and geographical variability of this family members is associated with evolutional genetic development reflected in their venoms even in the same species. Intragenic differences can be a result of genetic and environmental factors. DNA barcoding is a system that, based on the conserved DNA sequences, helps in differentiating the different species and same species in different habitat. This study aimed on using the mitochondrial cytochrome c oxidase 1 (COX1 or CO1 or COI) to obtain molecular identification information about the taxonomic status of a set of scorpion species (Androctonus crassicauda, Androctonus bicolor, Androctonus amoreuxi, Leiurus quinquestriatus, and Buthacus arenicola) collected from Egypt. COI gene is slowly evolving comparing to other protein-coding mitochondrial genes. Therefore, it is widely used for estimating molecular phylogenies. Also, COI gene represents one of the largest sequence data sets generated from any group for phylogenetic study and fulfills the phylogenetic accuracy putative. The sequencing data of the cytochrome oxidase 1 gene were applied to provide information for better understanding of the intraspecific variation, evolution, and genetic distance between these species. COI data from the Egyptian A. australi, and those of L. quinquestriatus from Sudan, previously reported in Egypt, had been included for genetic comparison. The results revealed that the high genetic diversity was found among A. amoreuxi and A. australis. There is no detectable genetic variation between the Egyptian samples of L. quinquestriatus and those isolated from Sudan. This study helped us to understand the current evolution of these six scorpions on the genetic level and gave us better understanding of differences of scorpion envenomation (SE) of the same species in different localities. [ABSTRACT FROM AUTHOR]

Background: Attention deficit hyperactivity disorder, which is a prevalent neurodevelopmental condition, commonly manifests during early childhood and has the potential to adversely affect an individual's social, academic, and occupational performance in multiple settings. Students with ADHD may struggle with attention, focus, listening, and completing schoolwork. Additionally, they may exhibit restless or disruptive behavior in class and may have learning disabilities that affect their academic performance. The aim of this study was to explore the perspectives of primary school teachers on ADHD in Alkadrow, Khartoum, Sudan. Methods: A descriptive cross-sectional study was conducted in Alkadrow-Bahri locality, Sudan, over a period of three to six months in 2022. The study population included primary school teachers who had taught for at least one year and encountered at least one student with ADHD. A convenience sampling technique was used to select a minimum of 59 participants, and data were collected using a self-administered questionnaire with closed-ended questions. SPSS version 23 was used to analyze the data, including descriptive statistics and inferential statistics such as chi-square tests and logistic regression analysis. Results: The study had 59 participants, with the majority being female and in the age group of 41-45 years. The participants were mostly married and had obtained psychology courses, with a bachelor's degree being the most common level of education. Many participants had over 20 years of teaching experience. Regarding the attitude toward attention deficit hyperactivity, most participants strongly agreed that they did have a negative/positive attitude toward it, and a majority agreed or were neutral toward ADHD. However, in the case of attention deficit hyperactivity, a significant percentage of participants disagreed or strongly disagreed with the statement. Conclusion: The study found that most participants had a negative attitude toward student referrals for medical care and believed that most symptoms of ADHD can be lowered by aging. Additionally, more than half strongly disagreed that punishment has a positive effect on ADHD. [ABSTRACT FROM AUTHOR]

Developing climate-resilient crop varieties with better performance under variable environments is essential to ensure food security in a changing climate. This process is significantly influenced, among other factors, by genotype × environment (G × E) interactions. With the objective of identifying high-yielding and stable genotypes, 20 elite durum wheat lines were evaluated in 24 environments (location–season combination) during 5 crop seasons (2010/11–2014/15). The REML (residual maximum likelihood)-predicted means of grain yield of 16 genotypes that were common across all environments ranged from 3522 kg/ha in G201 to 4132 kg/ha in G217. Results of additive main effect and multiplicative interaction (AMMI) analysis showed that genotypes (G), environments (E), and genotype × environment interaction (GEI) significantly affected grain yield. From the total sum of squares due to treatments (G + E + GEI), E attributed the highest proportion of the variation (90.0%), followed by GEI (8.7%) and G (1.3%). Based on the first four AMMI selections for grain yield in the 24 environments, genotypes G217, G219, G211, and G213 were selected in 23, 12, 11, and 9 environments, respectively. The genotype and genotype × environment biplot (GGE) biplot polygon view showed that the environments were separated into three mega-environments. The winning genotypes in these mega-environments were G217, G214, and G204. Genotypes G212, G220, G217, G215, and G213 showed low AMMI stability values (ASV), whereas genotypes G217, G220, G212, G211, and G219 showed low genotype selection index (GSI), indicating their better stability and adaptability to the test environments. The results indicated that genotypes G217, G219, G211, G213, and G220 combined both high grain yield and stability/adaptability under dry but irrigated and heat-prone environments. An in-depth analysis of the superior genotypes could help better understand the stress-adaptive traits that could be targeted to further increase durum wheat yield and stability under the changing climate. [ABSTRACT FROM AUTHOR]

Objective: In this study, we analyzed the molecular evolution of Staphylococcus aureus isolates using 16S rRNA gene and phylogenetic analysis to detect the prevalence of S. aureus infections in Sudan. Results: Molecular detection of S. aureus has shown that 20 (43.47%) of patients were positive for S. aureus. The phylogenetic tree of 16S rRNA sequences was divided into three lineages of S. aureus isolates detected from wound infections in Sudan. Nucleotides base-pair substitution was appeared at position 249. This mutation do not linked with Macrolides, Lincosamides and Streptogramines b resistant phenotype. Further studies should investigate the effect of that mutation on resistance to other antibiotics. [ABSTRACT FROM AUTHOR]

Background: Helicobacter pylori (H. pylori) infects nearly half of the world's population with a variation in incidence among different geographic regions. Genetic variants in the promoter regions of the IL1B gene can affect cytokine expression and creates a condition of hypoacidity which favors the survival and colonization of H. pylori. Therefore, the aim of this study was to characterize the polymorphic sites in the 5′- region [−687_ + 297] of IL1B in H. pylori infection using in silico tools. Results: A total of five nucleotide variations were detected in the 5′-regulatory region [−687_ + 297] of IL1B which led to the addition or alteration of transcription factor binding sites (TFBSs) or composite regulatory elements (CEs). Genotyping of IL1B − 31 C > T revealed a significant association between -31 T and susceptibility to H. pylori infection in the studied population (P = 0.0363). Comparative analysis showed conservation rates of IL1B upstream [−368_ + 10] region above 70% in chimpanzee, rhesus monkey, a domesticated dog, cow and rat. Conclusions: In H. pylori-infected patients, three detected SNPs (− 338, − 155 and − 31) located in the IL1B promoter were predicted to alter TFBSs and CE, which might affect the gene expression. These in silico predictions provide insight for further experimental in vitro and in vivo studies of the regulation of IL1B expression and its relationship to H. pylori infection. However, the recognition of regulatory motifs by computer algorithms is fundamental for understanding gene expression patterns. [ABSTRACT FROM AUTHOR]

Background. Helicobacter pylori (H. pylori) is ubiquitous among humans and one of the best-studied examples of an intimate association between bacteria and humans. Phylogeny and Phylogeography of H. pylori strains are known to mirror human migration patterns and reflect significant demographic events in human prehistory. In this study, we analyzed the molecular evolution of H. pylori strains detected from different tribes and regions of Sudan using 16S rRNA gene and the phylogenetic approach. Materials and methods. A total of 75 gastric biopsies were taken from patients who had been referred for endoscopy from different regions of Sudan. The DNA extraction was performed by using the guanidine chloride method. Two sets of primers (universal and specific for H. pylori) were used to amplify the 16S ribosomal gene. Sanger sequencing was applied, and the resulted sequences were matched with the sequences of the National Center for Biotechnology Information (NCBI) nucleotide database. The evolutionary aspects were analyzed using MEGA7 software. Results. Molecular detection of H. pylori has shown that 28 (37.33%) of the patients were positive for H. pylori and no significant differences were found in sociodemographic characteristics, endoscopy series, and H. pylori infection. Nucleotide variations were observed at five nucleotide positions (positions 219, 305, 578, 741, and 763–764), and one insertion mutation (750_InsC_751) was present in sixty-seven percent (7/12) of our strains. These six mutations were detected in regions of the 16S rRNA not closely associated with either tetracycline or tRNA binding sites; 66.67% of them were located in the central domain of 16S rRNA. The phylogenetic analysis of 16S rRNA sequences identified two lineages of H. pylori strains detected from different regions in Sudan. The presence of Sudanese H. pylori strains resembling Hungarian H. pylori strains could reflect the migration of Hungarian people to Sudan or vice versa. Conclusion. This finding emphasizes the significance of studying the phylogeny of H. pylori strains as a discriminatory tool to mirror human migration patterns. In addition, the 16S rRNA gene amplification method was found useful for bacterial identification and phylogeny. [ABSTRACT FROM AUTHOR]

Background: Sticky traps are generally viewed as interceptive sand fly sampling methods; although no previous experimental evidence has supported this assumption. In this study, we tested this assumption experimentally for Phlebotomus orientalis, the principal vector of visceral leishmaniasis in East Africa, and propose an explanation for the highly male-biased collection of sticky traps. Methods: A number of field experiments were carried out in March–June 2016–2019, in Gedarif state, eastern Sudan. In the first experiment, we compared numbers of P. orientalis caught on sticky traps made of black, red, transparent, white, yellow, green and blue A4 size papers set simultaneously at different lunar light conditions. In the second and third experiments, we compared numbers of P. orientalis captured on sticky traps placed side-by-side horizontally or vertically on the ground, or horizontally on a 15 cm height stool. We also witnessed mating behaviour of sand flies following their landing on un-sticky papers placed on the ground. Results: Phlebotomus orientalis showed significant attraction to white, yellow and transparent traps, with negligible numbers caught on the black and the red traps. Similarly, significantly higher numbers of P. orientalis were attracted to the horizontal traps, resulting in an 8-fold increase in sand fly trapping efficacy as compared to the vertical traps. Placing the traps on the stools resulted in significant reduction in this attraction. In contrast to the sticky traps that captured only very few females; we found that when male sand flies land on un-sticky white paper they successfully lure females and copulate with them. Conclusions: We demonstrate that, for P. orientalis, sticky traps are more attractant-based than interception-based sampling tools. Further, our findings support the notion that males of this sand fly species likely utilize the bright surface of the trap papers to perform mating rituals that attract the females for copulation. However, pre-mature death in the sticky oil hampers the completion of these rituals, and thus results in failure to attract the females. These findings inform our understanding of P. orientalis behaviour and have important implications for optimization of sticky trap design for vector surveillance purposes. [ABSTRACT FROM AUTHOR]

Whole genome sequencing of methicillin-resistant Staphylococcus aureus (MRSA) strain isolated from Sudan has led to a great deal of information, which allows the identification and characterization of some pivotal proteins. The objective of this study was to investigate the penicillin-binding proteins, PBP and PBP2a, of SO-1977 strain to have insights about their physicochemical properties and to assess and describe the interaction of some phytochemicals against them in silico. PBP and PBP2a from MRSA's Sudan strain were found to be of great resemblance with some other strains. G246E single-nucleotide polymorphism was reported and identified in the allosteric binding site positioned in the non-penicillin-binding domain. The docked compounds demonstrated good binding energies and hydrogen bond interactions with residue Ser404 which plays crucial roles in β-lactam activity. This finding would contribute significantly to designing effective β-lactam drugs, to combat and treat β-lactam–resistant bacteria in the future. [ABSTRACT FROM AUTHOR]

Whole genome sequencing of methicillin-resistant Staphylococcus aureus (MRSA) strain isolated from Sudan has led to a great deal of information, which allows the identification and characterization of some pivotal proteins. The objective of this study was to investigate the penicillin-binding proteins, PBP and PBP2a, of SO-1977 strain to have insights about their physicochemical properties and to assess and describe the interaction of some phytochemicals against them in silico. PBP and PBP2a from MRSA's Sudan strain were found to be of great resemblance with some other strains. G246E single-nucleotide polymorphism was reported and identified in the allosteric binding site positioned in the non-penicillin-binding domain. The docked compounds demonstrated good binding energies and hydrogen bond interactions with residue Ser404 which plays crucial roles in β-lactam activity. This finding would contribute significantly to designing effective β-lactam drugs, to combat and treat β-lactam–resistant bacteria in the future. [ABSTRACT FROM AUTHOR]