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The teak bee‐hole borer (Xyleutes ceramica (Walker, 1865)) is widespread in northern Thailand and is considered the most serious pest of teak (Tectona grandis) in the country. The present study investigated the factors affecting the infestation of teak trees by this species in three plantations in northern Thailand at different spatial scales, including the tree, plot and stand levels. At each plantation, 48 plots evenly distributed in three different young stands (1–10 years), three medium‐aged stands (11–20 years) and six old stands (exceeding 20 years) were sampled. At the plots, the number of current entrance holes of X. ceramica per teak tree was counted, and the characteristics of the trees and stands were assessed. A total of 1952 teak trees were sampled, 22.7% of which were infested by X. ceramica. According to our results, infestation was much more strongly affected by stand characteristics than by the characteristics of individual trees. Above all, understorey cover exhibited substantial effect with the infestation level being strongly limited in stands with dense understories. Additionally, young and medium‐aged stands on better quality sites were found to be the most susceptible to infestation, and well‐growing and/or damaged trees were preferred by the pest species. In conclusion, major recommendations for suppressing damage caused by X. ceramica include (a) promoting and maintaining the understorey above 30% cover, (b) planting mixed stands of commercial forest trees and (c) intensively monitoring the pest in young and medium‐aged stands, especially those growing at good‐ and medium‐quality sites. [ABSTRACT FROM AUTHOR]

Banteng (Bos javanicus) is listed as an endangered species because of a global population decline of at least 50% over the last 25 years. The Western Forest Complex (WEFCOM) of Thailand has been identified as a priority site for banteng population recovery, and Huai Kha Keang Wildlife Sanctuary (HKK) is the most important source site for this species within the WEFCOM. We have provided evidence and discussed banteng dispersal from HKK to Thung Yai Naresuan West Wildlife Sanctuary (TYW). We sampled an area of 147 km2 in banteng habitat next to the border between HKK and TYW using camera traps. We divided the sampled area into four grid cells and placed camera traps during January to December 2022. We setup the camera traps near saltlicks and natural water sources, as important resources for banteng, to maximize capture probability. In total, 2835 trap days were obtained. Bantengs were captured in all seasons (RAI = 1.66), especially in dry dipterocarp forest, which contains the ground forage availability for banteng, and the low‐slope area with elevation 600–700 m adjacent to the border between HKK and TYW. The results highlighted that banteng, which had never been reported in TYW before, appeared there for the first time. They most likely dispersed from the population source in HKK and settled in a habitat that is considered suitable for them. The habitat management and protection are significant for the future recovery of banteng populations in the TYW and the rest of protected areas in the WEFCOM. [ABSTRACT FROM AUTHOR]

Simple Summary: Mae Hong Son chicken is a local breed of North Thai domestic chicken widely distributed in Mae Hong Son; however, its genetic characterization, origin, and diversity remain unclear. Here, we studied the socio–cultural, environmental, and genetic aspects of the Mae Hong Son chicken breed, and we investigated its genetic diversity and footprint using the genotyping of 28 microsatellite markers and analyzed mitochondrial D-loop sequencing data. Genetic diversity analysis indicated that the Mae Hong Son chicken population is genetically highly diverse, with 35 haplotypes clustered into haplogroups A, B, E, and F, mostly in the North ecotype. Allelic gene pool patterns showed a unique DNA fingerprint of the Mae Hong Son chicken, as compared to other breeds and red junglefowl. A genetic introgression of some parts of the gene pool of red junglefowl and other indigenous breeds was identified in the Mae Hong Son chicken, supporting the hypothesis of the origin of the Mae Hong Son chicken as a crossbreed between red junglefowl and Thai indigenous village chickens that adapted to the environmental, social, and cultural conditions in its habitat. These findings enrich our understanding of the genetic blueprint, origin, and evolutionary process of the Mae Hong Son chickens and lay the foundation for future studies to improve domestic chickens using this indigenous chicken breed. Understanding the genetic diversity of domestic chicken breeds under the impact of socio–cultural and ecological dynamics is vital for the conservation of natural resources. Mae Hong Son chicken is a local breed of North Thai domestic chicken widely distributed in Mae Hong Son Province, Thailand; however, its genetic characterization, origin, and diversity remain poorly understood. Here, we studied the socio–cultural, environmental, and genetic aspects of the Mae Hong Son chicken breed and investigated its diversity and allelic gene pool. We genotyped 28 microsatellite markers and analyzed mitochondrial D-loop sequencing data to evaluate genetic diversity and assessed spatial habitat suitability using maximum entropy modeling. Sequence diversity analysis revealed a total of 188 genotyped alleles, with overall nucleotide diversity of 0.014 ± 0.007, indicating that the Mae Hong Son chicken population is genetically highly diverse, with 35 (M1–M35) haplotypes clustered into haplogroups A, B, E, and F, mostly in the North ecotype. Allelic gene pool patterns showed a unique DNA fingerprint of the Mae Hong Son chicken, as compared to other breeds and red junglefowl. A genetic introgression of some parts of the gene pool of red junglefowl and other indigenous breeds was identified in the Mae Hong Son chicken, supporting the hypothesis of the origin of the Mae Hong Son chicken. During domestication in the past 200–300 years after the crossing of indigenous chickens and red junglefowl, the Mae Hong Son chicken has adapted to the highland environment and played a significant socio–cultural role in the Northern Thai community. The unique genetic fingerprint of the Mae Hong Son chicken, retaining a high level of genetic variability that includes a dynamic demographic and domestication history, as well as a range of ecological factors, might reshape the adaptation of this breed under selective pressure. [ABSTRACT FROM AUTHOR]

The gaur (Bos gaurus) is found throughout mainland South and Southeast Asia but is listed as an endangered species in Thailand with a decreasing population size and a reduction in suitable habitat. While gaur have shown a population recovery from 35 to 300 individuals within 30 years in the Khao Phaeng Ma (KPM) Non-Hunting Area, this has caused conflict with villagers along the border of the protected area. At the same time, the ecotourism potential of watching gaurs has boosted the local economy. In this study, 13 mitochondrial displacement-loop sequence samples taken from gaur with GPS collars were analyzed. Three haplotypes identified in the population were defined by only two parsimony informative sites (from 9 mutational steps of nucleotide difference). One haplotype was shared among eleven individuals located in different subpopulations/herds, suggesting very low genetic diversity with few maternal lineages in the founder population. Based on the current small number of sequences, neutrality and demographic expansion test results also showed that the population was likely to contract in the near future. These findings provide insight into the genetic diversity and demography of the wild gaur population in the KPM protected area that can inform long-term sustainable management action plans. [ABSTRACT FROM AUTHOR]

Nipah virus (NiV) is a zoonotic virus that can pose a serious threat to human and livestock health. Old-world fruit bats (Pteropus spp.) are the natural reservoir hosts for NiV, and Pteropus lylei, Lyle's flying fox, is an important host of NiV in mainland Southeast Asia. NiV can be transmitted from bats to humans directly via bat-contaminated foods (i.e., date palm sap or fruit) or indirectly via livestock or other intermediate animal hosts. Here we construct risk maps for NiV spillover and transmission by combining ecological niche models for the P. lylei bat reservoir with other spatial data related to direct or indirect NiV transmission (livestock density, foodborne sources including fruit production, and human population). We predict the current and future (2050 and 2070) distribution of P. lylei across Thailand, Cambodia, and Vietnam. Our best-fit model predicted that central and western regions of Thailand and small areas in Cambodia are currently the most suitable habitats for P. lylei. However, due to climate change, the species range is predicted to expand to include lower northern, northeastern, eastern, and upper southern Thailand and almost all of Cambodia and lower southern Vietnam. This expansion will create additional risk areas for human infection from P. lylei in Thailand. Our combined predictive risk maps showed that central Thailand, inhabited by 2.3 million people, is considered highly suitable for the zoonotic transmission of NiV from P. lylei. These current and future NiV transmission risk maps can be used to prioritize sites for active virus surveillance and developing awareness and prevention programs to reduce the risk of NiV spillover and spread in Thailand. [ABSTRACT FROM AUTHOR]

A Bayesian approach was used to develop binary quantile regression models featuring the lasso penalty. The models afford the advantages of all quantile regression models, such as robustness and detailed insights into covariate effects; they also handle issues associated with overfitting well. Thus, this model was used to investigate habitat suitability for the management of tiger prey species. Field data were collected from 150 sampling sites (2,416 sub-plots) in Thap Lan National Park of the Dong Phayayen-Khao Yai Forest Complex (DPKY) from August 2019 to March 2021. We focused on sambar deer (Rusa unicolor) and gaur (Bos gaurus) because they are the principal prey species of tigers. Vegetation was sampled for biomass and nutrient content to identify suitable habitat. The "bayesQR" package of R was used to identify habitats appropriate for these species. The correlation between forage crop biomass and the normalized difference vegetation index (NDVI) was significantly associated with tiger prey species presence. The habitat can be improved by increasing grass and forb biomasses as the prey species prefer open habitats, such as grassland and open areas of dry evergreen forest. Habitat management has ensured that the grass biomass of open forest is significantly higher than that of dense forest. In addition, the hemicellulose content of open forest was significantly greater than that of dense forest. We found that spatial modeling combined with Bayesian, lasso binary quantile regression could aid wildlife habitat management in a Thai National Park. [ABSTRACT FROM AUTHOR]

Understanding distribution patterns is essential for the long- term conservation of megafauna, particularly the Asian elephant (Elephas maximus). We investigated the dynamic occupancy of Asian elephants in the Thung Yai Naresuan West Wildlife Sanctuary in Thailand. Asian elephant occurrences were recorded during patrol activities from 2012 to 2019. We applied a single-species dynamic occupancy model to examine the environmental factors influencing habitat occupancy of Asian elephant across multiple seasons. The best- supported model, based on the Akaike information criterion (AIC), indicated that the normalized difference vegetation index and elevation positively influenced the probability of colonization. In contrast, the distance to the nearest population source sites showed a negative association. The probability of local extinction was positively correlated with the distance to the nearest villages and population source sites. The predictive map indicated a higher probability of colonization in a remote mountainous region of the center of the protected area. Higher extinction probability was associated with areas of dense human activity and far from population source sites connecting the Asian elephant population to the east. This is the first study to utilize a patrol database for assessing the dynamic occupancy of Asian elephants across multiple years. Our model provides insight into the dynamic distribution patterns of Asian elephants within the wildlife sanctuary and the factors that most influence these patterns. Long-term ecological data provide crucial information for assessing biodiversity, population status, and the ecological processes of focal wildlife species and are valuable for both protected area management and conservation efforts. [ABSTRACT FROM AUTHOR]

In total, 160 ticks infesting cattle in the northeast region of Thailand were collected and used for molecular investigation. Three tick species—Rhipicephalus microplus Canestrini, Rhipicephalus haemaphysaloides Supino and Haemaphysalis bispinosa Neumann—were identified based on morphology and DNA sequences of mitochondrial cytochrome c oxidase subunit 1 (CO1) and 16S ribosomal RNA (16S rRNA). In total, 26 and seven unique haplotypes of the CO1 and 16S rRNA genes, respectively, were recovered. Phylogenetic analysis using the CO1 sequence revealed that the R. microplus from northeastern Thailand were grouped into the previously described clades A and C, whereas the 16S rRNA phylogenetic tree assigned all isolates of R. microplus from Northeast Thailand into the previously described clade B. Clade C of the CO1 phylogenetic tree is a new genetic assemblage recently discovered from India and Malaysia, which has now been detected in our study. The haplotype network also demonstrated that R. microplus is divided into two haplogroups corresponding to the assemblage of the CO1 phylogenetic tree. Our findings strongly support the previous genetic assemblage classification and evidence that R. microplus from Northeast Thailand is a species complex comprising at least two genetic assemblages, i.e., clades A and C. However, further investigation is needed and should involve more comprehensive genetic and morphological analyses and cover a larger part of their distributional range throughout Southeast Asia. [ABSTRACT FROM AUTHOR]

In Thailand, there are at least ten species of freshwater snails of the family Bithyniidae, most of which can act as intermediate hosts of veterinary and medically important parasites. The genetic variation, geographical distribution, and taxonomic status of some species are obscure, including for Hydrobioides nassa. Thus, this study aims to explore the genetic variation and distribution of H. nassa in north, west, and central Thailand. We collected 264 specimens of H. nassa from 46 localities in 16 provinces using mitochondrial cytochrome c oxidase subunit I (COI) and 16S ribosomal DNA sequences to determine variation. Genetic diversity of H. nassa is relatively high, with 65 and 11 haplotypes of COI and 16S rDNA observed, respectively. The phylogenetic tree and haplotype network analyses classified H. nassa into three haplogroups (haplogroup I–III). Haplogroup I and II belonged to clade A, whereas haplogroup III belonged to clade B. Interestingly, haplogroup III or clade B contained the specimens from Yom river basin in Phrae province, which was the most genetically distinct. Thus, this study suggests that H. nassa in Thailand is a complex of phenotypically similar but genetically distinct species. [ABSTRACT FROM AUTHOR]

Teak is an important and valuable tropical hardwood species. In this study, we developed and evaluated suitable taper equations for teak growing in Western Thailand using a formulation of Goodwin cubic polynomial model combined with a bark thickness model. The best taper model calibration was selected based on goodness-of-fit and leave-one-out cross validation statistical testing. In total, 12 different model calibrations were tested, with Thong Pha Phum (TPP) 2 being the most suitable for teak in Western Thailand. The mean prediction error of three validation statistics: (prediction of diameter under bark given height; prediction of height given diameter under bark; and prediction of under bark volume given log length) were within 10% and the overall validation index was 5.454, which was the lowest when compared to other calibrations. A comparison of TPP 2 with a teak taper equation developed for Northern Thailand, using a graphical analysis of the stem shape and bark thickness, indicated that the teak trees growing in the two regions have similar stem shapes, but the trees in Western Thailand tend to have a thicker bark. These results will also help in further work as they indicate that bark thickness equations are particularly important. [ABSTRACT FROM AUTHOR]

Recent ecological theories propose that species reach their highest abundance and genetic diversity in the center of their ecological niche and decline toward the edges. We assessed whether Lyle's flying fox, Pteropus lylei, abundance and genetic diversity were correlated with niche centroid distance using an ecological niche model as a proxy for fundamental niche (NF). Alternatively, we assessed whether P. lylei abundance and genetic diversity were correlated with fine‐scale environmental factors as a proxy of the species' realized niche (NR). We examined relationships between abundance and environmental factors at coarse and fine scales as proxies of NF and NR, respectively. For coarse scale, ecological niche of P. lylei was modeled using all available occurrence records in Thailand, Cambodia, and Vietnam, coupled with climatic data. We conducted field measurements of P. lylei abundance and used genetic structure data across a large portion of the species' range. We measured Euclidean distances between abundance and genetic data and the niche centroid in environmental dimensions. Spearman's correlation was estimated between abundance and genetic diversity vs. distance to the niche centroid. Complementarily, for the fine‐scale test, we measured multiple regression models between abundance and genetic diversity versus the normalized difference vegetation index (NDVI), local temperature, percent area of waterbodies, human density, and number of Buddhist temples. We failed to detect relationships between abundance and genetic diversity with the distance to the niche centroid in the coarse‐scale model. When using the fine‐scale, landscape‐level data, we found negative correlation between genetic diversity and number of temples. The data available were unable to support niche centroid hypothesis for the current distribution and abundances of P. lylei. We note that our failure to find an association does not support nor reject the niche centroid hypothesis. Instead, our capacity to test the niche centroid hypothesis may be limited by our ability to use empirical data to accurately reconstruct NF from field observations only. Future research may require physiology‐based experimental approaches to explore relationships between species abundances and the niche structure. [ABSTRACT FROM AUTHOR]

The association between patch metrics and roosting site (n = 31) suitability of Lyle's flying fox (Pteropus lylei) in 26 Central Eastern and Western provinces of Thailand was quantified. Land use classes with 90-m resolution were identified based on various vegetation and land cover types to calculate patch metrics using FRAGSTATS. Then, Maximum Entropy Modeling (MaxEnt) was performed using patch metrics covariates to produce a predictive potential distribution map. The results indicated that patch contiguity (contiguity index, 63.7%), patch area (29.3%), and patch shape complexity (shape index, 5.7%) are the most influential patch metrics, all of which have negative effects on roosting site suitability. In total, 13,222 small patches were considered highly suitable patches, with a mean area of 0.921 ± 0.698 (SD) ha, which accounted for 122,090 ha (2.04%) of the study area. Roosting sites predicted from the model were consistently associated with occurrences of roosting sites observed in temples; such habitats likely provide shelter from external threats for colonies roosting in a human-dominated landscape. [ABSTRACT FROM AUTHOR]

• Three distinct genetic lineages (I–III) of Bithynia siamensis goniomphalos (Bsg) were classified. • Lineages II and III of B. s. goniomphalos were novel. • Lineage III was basal to a clade that included B. s. siamensis (Bss) and lineages I and II of Bsg. • The genetic distance between Bss and Bsg was similar to the level of intraspecific genetic divergence within Bsg. • The genetic makeup of Bsg is sub-structured with genetic structure related to specific catchment systems. The freshwater snail Bithynia siamensis goniomphalos sensu lato is widely distributed in the Lower Mekong Basin where it acts as the first intermediate host of the liver fluke Opisthorchis viverrini , a group 1 carcinogen causing cholangiocarcinoma. This study explores the genetic structure and geographical variation of B. s. goniomphalos from eight previously studied catchments and eight new catchments. These catchments belong to five previously studied catchment systems and one new catchment system (Tonlesap) in the Lower Mekong Basin. Two new catchment systems, Prachin Buri and Bang Pakong from eastern and central Thailand, respectively, were also examined. We collected 289 specimens of B. s. goniomphalos from 15 previously studied localities and 18 new localities in Thailand, Lao PDR (People's Democratic Republic), and Cambodia. The mitochondrial cytochrome c oxidase subunit 1 and 16S ribosomal DNA sequences were used to determine genetic variation. Classification of haplotypes specified 100 at the cox 1 locus and 15 at the rrnL locus. Comparison between 16 catchment populations found significant genetic differences (Ф ST) between all populations. The phylogenetic tree and haplotype network analyses classified B. s. goniomphalos into three evolutionary lineages (lineage I–III). Lineage I contained B. s. goniomphalos from the Mekong, Chi, Mun, Prachin Buri and Bang Pakong catchments in Thailand, including the Nam Ngum catchment in Lao PDR. Lineage II contained all specimens from the Tonlesap catchment, whereas lineage III contained specimens from the Mekong and Sea Bang Heang catchments in Thailand and Lao PDR, respectively. Interestingly, Bithynia siamensis siamensis was placed between lineages I and II of B. s. goniomphalos. This study supports the hypothesis that B. s. goniomphalos is a species complex containing at least three distinct evolutionary lineages in the Lower Mekong Basin, and that comprehensive molecular genetic analyses need to be conducted to further our understanding of the evolutionary and systematic relationships of these Bithynia snail taxa. [ABSTRACT FROM AUTHOR]

• COI sequence was used to identify species and sub-species of Bithynia. • Bithynia siamensis siamensis and B. s. goniomphalos were found in central Thailand. • Bithynia s. siamensis, B. s. goniomphalos and B. funiculata were found in northern Thailand. • Genetic structure of B. s. goniomphalos was related to catchment systems. • Bithynia s. siamensis and B. s. goniomphalos should be classified as " B. siamensis sensu lato" The freshwater snails, Bithynia are the first intermediate hosts of the liver fluke, Opisthorchis viverrini , the causative agent of cholangiocarcinoma (CCA) in Southeast Asia. In Thailand, there are three traditionally recognized taxa of Bithynia: Bithynia funiculata; B. siamensis siamensis; B. s. goniomphalos. This study examines the geographical distribution and genetic structure of Bithynia species from five previously reported water catchments and six new catchments in Thailand. Of these, three new catchments Kok, Wang, and Nan are from the north and the remaining three new catchments are Phetchaburi, Prachuap Khiri Khan Coast, Mae Klong from the west of Thailand. We sampled 291 Bithynia snails from 52 localities in 11 catchment systems in the northern, western and central regions of Thailand. Mitochondrial cytochrome c oxidase subunit 1 (COI) and 16S ribosomal DNA (16S rDNA) sequences were used to examine genetic diversity of Bithynia snails which revealed 200 and 27 haplotypes of COI and 16S rDNA, respectively. However, as 16S rDNA is a conserved gene, it is not suitable to distinguish Bithynia at the species and sub-species levels in our study. The phylogenetic tree and haplotype network analyses included sequences of COI from GenBank. B. funiculata was found only in the north of Thailand and the genetic structure did not differ among populations. Genetic differentiation (Φ ST) analyses showed that B. s. goniomphalos contained three distinct lineages. Lineage I contained B. s. goniomphalos from the vast majority of catchment systems in Thailand and Lao PDR. Lineage II contained all B. s. goniomphalos from the Prachin Buri and Bang Pakong catchment systems in eastern and central Thailand, including samples from all catchment systems in Cambodia. While lineage III contained B. s. goniomphalos from the Songkram and Nam Kam catchment systems in Thailand and the Nam Ngum and Huai Som Pak catchment systems in Lao PDR. Furthermore, results showed that all samples of B. s. siamensis were classified into one lineage and placed phylogenetically between B. s. goniomphalos lineages I and II. Thus, the taxonomic status of B. s. goniomphalos and B. s. siamensis requires reassessment, and they should be reclassified as belonging to the species complex " Bithynia siamensis sensu lato". [Display omitted] [ABSTRACT FROM AUTHOR]

The North African catfish (Clarias gariepinus) is a significant species in aquaculture, which is crucial for ensuring food and nutrition security. Their high adaptability to diverse environments has led to an increase in the number of farms that are available for their production. However, long-term closed breeding adversely affects their reproductive performance, leading to a decrease in production efficiency. This is possibly caused by inbreeding depression. To investigate the root cause of this issue, the genetic diversity of captive North African catfish populations was assessed in this study. Microsatellite genotyping and mitochondrial DNA D-loop sequencing were applied to 136 catfish specimens, collected from three populations captured for breeding in Thailand. Interestingly, extremely low inbreeding coefficients were obtained within each population, and distinct genetic diversity was observed among the three populations, indicating that their genetic origins are markedly different. This suggests that outbreeding depression by genetic admixture among currently captured populations of different origins may account for the low productivity of the North African catfish in Thailand. Genetic improvement of the North African catfish populations is required by introducing new populations whose origins are clearly known. This strategy should be systematically integrated into breeding programs to establish an ideal founder stock for selective breeding., Competing Interests: The authors declare no competing financial interests or personal relationships that have influenced this study., (Copyright: © 2024 Patta et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)

Blastocystis is a parasitic protist of a variety of hosts, including humans. Mapping the distribution of Blastocystis and its genetic variants across different host species can help us understand the epidemiology of this organism and its role in health and disease. This study aimed to identify subtypes of Blastocystis detected in different animal hosts in Thailand. A total of 825 fecal samples belonging to 18 vertebrate orders, 36 families, 68 genera, and 80 species were collected. Of these, 111 specimens were Blastocystis-positive by culture. Seventy-nine samples were subjected to small subunit (SSU) ribosomal DNA amplification by PCR, and reliable subtype data were obtained for 61 specimens. At least 14 subtypes (ST), namely ST1 to ST10, ST14/ST24/ST25 complex, ST23, ST26, and ST29 were detected. In addition, Blastocystis was found in tortoises. ST1 (3.2%) and ST5 (11.5%) were found in pigs, ST2 (1.6%) and ST3 (3.2%) in non-human primates, ST4 (14.7%) in rodents and ruminants, ST6 (4.9%), ST7 (30%), ST9 (1.6%), and ST29 (1.6%) in birds, ST8 (6.6%) in Green peafowl and East Asian Porcupine, and ST10 (4.9%), ST14/ST24/ST25 (9.8%), ST23 (1.6%) and ST26 (1.6%) in ruminants. The sequence recovered from the elongated tortoises (Indotestudo elongata) (3.2%) was phylogenetically placed within the reptilian cluster of Blastocystis, for which no subtype system is available yet. Of note, we did not obtain Blastocystis sequences from any of the many canids and felids sampled in the study, and our data are in support of host specificity of Blastocystis, according to both colonization and subtype distribution., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023. Published by Elsevier Ltd.)