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Protozoa play important roles in microbial communities, regulating populations via predation and contributing to nutrient cycling. While amoebae have been identified in acid rock drainage (ARD) systems, our understanding of their symbioses in these extreme environments is limited. Here, we report the first isolation of the amoeba Stemonitis from an ARD environment as well as the genome sequence and annotation of an associated bacterium, Dyella terrae strain Ely Copper Mine, from Ely Brook at the Ely Copper Mine Superfund site in Vershire, Vermont, United States. Fluorescent in situ hybridization analysis showed this bacterium colonizing cells of Stemonitis sp. in addition to being outside of amoebal cells. This amoeba-resistant bacterium is Gram-negative with a genome size of 5.36 Mbp and GC content of 62.5%. The genome of the D. terrae strain Ely Copper Mine encodes de novo biosynthetic pathways for amino acids, carbohydrates, nucleic acids, and lipids. Genes involved in nitrate (1) and sulfate (7) reduction, metal (229) and antibiotic resistance (37), and secondary metabolite production (6) were identified. Notably, 26 hydrolases were identified by RAST as well as other biomass degradation genes, suggesting roles in carbon and energy cycling within the microbial community. The genome also contains type IV secretion system genes involved in amoebae resistance, revealing how this bacterium likely survives predation from Stemonitis sp. This genome analysis and the association of D. terrae strain Ely Copper Mine with Stemonitis sp. provide insight into the functional roles of amoebae and bacteria within ARD environments. [ABSTRACT FROM AUTHOR]

Abstract: This paper presents a compilation of published mineralogic and trace element data from nine gas shales in the United States. Formations analyzed include the Antrim, Bakken, Barnett, Eagle Ford, Haynesville, Marcellus, New Albany, Utica and Woodford. These mineralogic and trace element data can be used to assess the potential for environmental impacts during hydraulic fracturing. Impacts addressed in this study include: 1) the potential for acid rock drainage generation during gas shale weathering, 2) the distribution of trace elements in gas shales and comparison with regulatory guidelines, and 3) the implications for environmental management of well cuttings. The use of the mineralogic data to assess the fracability of the gas shales is also considered. Compilations of the mineralogy and geochemistry of gas shales can be a valuable resource for managing real and perceived environmental problems associated with their exploitation. Comprehensive environmental assessment to fully address these issues, in addition to other potential environmental impacts, will require collection and collation of additional data on the mineralogy and trace element geochemistry of gas and other hydrocarbon producing shales. [Copyright &y& Elsevier]

Abstract: Rainfall events cause both increases and decreases in acid and metals concentrations and their loadings from mine wastes, and unmined mineralized areas, into receiving streams based on data from 3 mines sites in the United States and other sites outside the US. Gradual increases in concentrations occur during long dry spells and sudden large increases are observed during the rising limb of the discharge following dry spells (first flush). By the time the discharge peak has occurred, concentrations are usually decreased, often to levels below those of pre-storm conditions and then they slowly rise again during the next dry spell. These dynamic changes in concentrations and loadings are related to the dissolution of soluble salts and the flushing out of waters that were concentrated by evaporation. The underlying processes, pyrite oxidation and host rock dissolution, do not end until the pyrite is fully weathered, which can take hundreds to thousands of years. These observations can be generalized to predict future conditions caused by droughts related to El Niño and climate change associated with global warming. Already, the time period for dry summers is lengthening in the western US and rainstorms are further apart and more intense when they happen. Consequently, flushing of inactive or active mine sites and mineralized but unmined sites will cause larger sudden increases in concentrations that will be an ever increasing danger to aquatic life with climate change. Higher average concentrations will be observed during longer low-flow periods. Remediation efforts will have to increase the capacity of engineered designs to deal with more extreme conditions, not average conditions of previous years. [Copyright &y& Elsevier]

In-situ caged rainbow trout ( Oncorhynchus mykiss) studies reveal significant fish toxicity and fish stress in a river impacted by headwater acid rock drainage (ARD). Stocked trout survival and aqueous water chemistry were monitored for 10 days at 3 study sites in the Snake River watershed, Colorado, U.S.A. Trout mortality was positively correlated with concentrations of metals calculated to be approaching or exceeding conservative toxicity thresholds (Zn, Mn, Cu, Cd). Significant metal accumulation on the gills of fish stocked at ARD impacted study sites support an association between elevated metals and fish mortality. Observations of feeding behavior and significant differences in fish relative weights between study site and feeding treatment indicate feeding and metals-related fish stress. Together, these results demonstrate the utility of in-situ exposure studies for stream stakeholders in quantifying the relative role of aqueous contaminant exposures in limiting stocked fish survival. [ABSTRACT FROM AUTHOR]

Ancient deposits of ferricrete (stratified iron oxyhydroxide or clastic sediment cemented by stratified iron oxyhydroxide) are present inheadwater streams draining an historic mining district in the Rocky Mountains, USA. These deposits, which form under conditions of low pHand high metal concentrations, are present in streams draining many other mineralized areas. Radiocarbon dating of wood fragments entombed within the ferricrete indicates dates of deposition as old as 8840150 years before present (b.p.). The ferricrete deposits provide evidence that natural, metal-rich acid rock drainage has been occurring inthis mineralized region for thousands of years, due to the weathering and oxidation of exposed or near-surface massive sulfide ore deposits. The dating and chemical composition of the ferricrete deposits have applications to the environmental remediation of historic mining sites and to environmental issues related to natural background chemistry. In addition, the radiocarbon dates of the ferricrete deposits correlate closely with warm-wet periods in the Holocene record, showingthat ferricrete deposits may represent a previously untapped source of paleoclimatic information. [ABSTRACT FROM AUTHOR]