364 results on '"Synthetic Cells"'
Search Results
352. Nano-enabled synthetic biology.
- Author
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Doktycz, Mitchel J and Simpson, Michael L
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ULTRASTRUCTURE (Biology) ,SYNTHETIC biology ,GENETICS ,CELLS ,NANOTECHNOLOGY - Abstract
Biological systems display a functional diversity, density and efficiency that make them a paradigm for synthetic systems. In natural systems, the cell is the elemental unit and efforts to emulate cells, their components, and organization have relied primarily on the use of bioorganic materials. Impressive advances have been made towards assembling simple genetic systems within cellular scale containers. These biological system assembly efforts are particularly instructive, as we gain command over the directed synthesis and assembly of synthetic nanoscale structures. Advances in nanoscale fabrication, assembly, and characterization are providing the tools and materials for characterizing and emulating the smallest scale features of biology. Further, they are revealing unique physical properties that emerge at the nanoscale. Realizing these properties in useful ways will require attention to the assembly of these nanoscale components. Attention to systems biology principles can lead to the practical development of nanoscale technologies with possible realization of synthetic systems with cell-like complexity. In turn, useful tools for interpreting biological complexity and for interfacing to biological processes will result. [ABSTRACT FROM AUTHOR]
- Published
- 2007
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353. Platelet-like nanoparticles: mimicking shape, flexibility, and surface biology of platelets to target vascular injuries.
- Author
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Anselmo AC, Modery-Pawlowski CL, Menegatti S, Kumar S, Vogus DR, Tian LL, Chen M, Squires TM, Sen Gupta A, and Mitragotri S
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- Animals, Cell Adhesion, Female, Mice, Mice, Inbred BALB C, Microscopy, Electron, Scanning, Platelet Aggregation, Spectroscopy, Fourier Transform Infrared, Blood Platelets pathology, Cell Shape, Nanoparticles, Vascular System Injuries pathology
- Abstract
Targeted delivery of therapeutic and imaging agents in the vascular compartment represents a significant hurdle in using nanomedicine for treating hemorrhage, thrombosis, and atherosclerosis. While several types of nanoparticles have been developed to meet this goal, their utility is limited by poor circulation, limited margination, and minimal targeting. Platelets have an innate ability to marginate to the vascular wall and specifically interact with vascular injury sites. These platelet functions are mediated by their shape, flexibility, and complex surface interactions. Inspired by this, we report the design and evaluation of nanoparticles that exhibit platelet-like functions including vascular injury site-directed margination, site-specific adhesion, and amplification of injury site-specific aggregation. Our nanoparticles mimic four key attributes of platelets, (i) discoidal morphology, (ii) mechanical flexibility, (iii) biophysically and biochemically mediated aggregation, and (iv) heteromultivalent presentation of ligands that mediate adhesion to both von Willebrand Factor and collagen, as well as specific clustering to activated platelets. Platelet-like nanoparticles (PLNs) exhibit enhanced surface-binding compared to spherical and rigid discoidal counterparts and site-selective adhesive and platelet-aggregatory properties under physiological flow conditions in vitro. In vivo studies in a mouse model demonstrated that PLNs accumulate at the wound site and induce ∼65% reduction in bleeding time, effectively mimicking and improving the hemostatic functions of natural platelets. We show that both the biochemical and biophysical design parameters of PLNs are essential in mimicking platelets and their hemostatic functions. PLNs offer a nanoscale technology that integrates platelet-mimetic biophysical and biochemical properties for potential applications in injectable synthetic hemostats and vascularly targeted payload delivery.
- Published
- 2014
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354. Chemical synthetic biology: a mini-review.
- Author
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Chiarabelli C, Stano P, and Luisi PL
- Abstract
Chemical synthetic biology (CSB) is a branch of synthetic biology (SB) oriented toward the synthesis of chemical structures alternative to those present in nature. Whereas SB combines biology and engineering with the aim of synthesizing biological structures or life forms that do not exist in nature - often based on genome manipulation, CSB uses and assembles biological parts, synthetic or not, to create new and alternative structures. A short epistemological note will introduce the theoretical concepts related to these fields, whereas the text will be largely devoted to introduce and comment two main projects of CSB, carried out in our laboratory in the recent years. The "Never Born Biopolymers" project deals with the construction and the screening of RNA and peptide sequences that are not present in nature, whereas the "Minimal Cell" project focuses on the construction of semi-synthetic compartments (usually liposomes) containing the minimal and sufficient number of components to perform the basic function of a biological cell. These two topics are extremely important for both the general understanding of biology in terms of function, organization, and development, and for applied biotechnology.
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- 2013
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355. Flow cytometric and immunohistochemical analysis of BrdU positive DNA synthetic cells in female genital tract malignant tumor cells
- Author
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Morimasa Matsuda, Toshihiko Izutsu, Shunji Oyama, Teruo Kagabu, Shigenobu Kaneko, and Iwao Nishiya
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Female circumcision ,Pathology ,medicine.medical_specialty ,chemistry.chemical_compound ,chemistry ,medicine ,Immunohistochemistry ,Biology ,Synthetic Cells ,DNA - Published
- 1989
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356. Isolation of high-rate DNA synthetic cells by Con A chromatography
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Mark A. Wallenbrock and Jerald J. Killion
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Time Factors ,Physiology ,Clinical Biochemistry ,Population ,Cell Separation ,Biology ,Chromatography, Affinity ,Cell Line ,chemistry.chemical_compound ,Concanavalin A ,L1210 cell ,Animals ,Leukemia L1210 ,education ,Synthetic Cells ,High rate ,education.field_of_study ,Chromatography ,DNA synthesis ,DNA, Neoplasm ,Cell Biology ,Nylons ,chemistry ,Autoradiography ,L1210 cells ,Thymidine ,DNA - Abstract
The separation of L1210 cells with columns of Con A-derivatized nylon was investigated. Most of the cells bound to the column irreversibly. The binding was lectin-specific. Cells were pulse labeled with 3H-thymidine and applied to Con A columns. Those cells not binding the columns were enriched in incorporated thymidine compared to the unseparated population. Data is presented which suggests that a small, synchronized fraction of cells synthesizing DNA at a high rate is reduced in Con A-nylon affinity. It is proposed that L1210 cell DNA synthesis is not uniform in rate and that changes in this rate are related to changes in the ability of cells to bind Con A-nylon.
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- 1978
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357. Effect of phytic acid on colonic epithelial cell proliferation
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Lilian U. Thompson, R.P. Bird, and B.K. Nielsen
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Male ,Cancer Research ,Phytic Acid ,Colon ,Crypt ,Biology ,Descending colon ,chemistry.chemical_compound ,Labelling ,medicine ,Animals ,Intestinal Mucosa ,Synthetic Cells ,Phytic acid ,Cell growth ,Body Weight ,Cell Cycle ,food and beverages ,Epithelial Cells ,DNA ,Molecular biology ,Epithelium ,Rats ,medicine.anatomical_structure ,Oncology ,Biochemistry ,chemistry - Abstract
Cell proliferation was studied in descending, transverse and ascending colonic crypts of rats fed either 0%, 0.6%, 1.2% or 2.0% phytic acid (PA). Significant effects of phytic acid were seen only in the descending colon. No changes in crypt height were observed. Both the 1.2 and 2.0% phytic acid groups exhibited significantly lower uppermost labelled cells than the control group. Animals given 1.2% and 2.0% phytic acid also showed significantly reduced DNA synthetic cells, as indicated by lower labelling indices.
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- 1987
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358. SYNTHETIC RED BLOOD CELLS FROM LIPID ENCAPSULATED HEMOGLOBIN
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Irving F. Miller
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chemistry.chemical_compound ,Chromatography ,Biochemistry ,Chemistry ,General Chemical Engineering ,Carbon dioxide ,chemistry.chemical_element ,Electrophoretic mobilities ,General Chemistry ,Hemoglobin ,Synthetic Cells ,Oxygen - Abstract
Synthetic red blood cells have been formed by microencapsulating hemoglobin solutions in lipid mixtures. The synthetic cells are stable, being somewhat stronger than normal red blood cells, can be tailored to have the same electrophoretic mobilities, and are somewhat smaller than normal red cells. They exhibit essentially the same oxygen and carbon dioxide carrying characteristics as normal red cells and do not appear to interact with natural blood in-vivo. In experiments involving complete replacement of natural blood in test animals, life has been sustained and no side effects have been observed.
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- 1981
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359. Construction of Synthetic Escherichia Coli Producing s-linalool
- Author
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Dujduan Waraho, Rattana Thanasomboon, Asawin Meechai, and Supapon Cheevadhanarak
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Escherichia Coli ,Computer science ,linalool ,Microorganism ,Cell ,Kanamycin ,Economic shortage ,Tetramycin ,BioBrick ,medicine.disease_cause ,chemistry.chemical_compound ,Synthetic biology ,medicine.anatomical_structure ,Linalool ,chemistry ,medicine ,General Earth and Planetary Sciences ,Food science ,synthetic biology ,Synthetic Cells ,Escherichia coli ,General Environmental Science ,medicine.drug - Abstract
Floral scents are used in many industries and demand for them increases every year. However, the shortage of extracted fragrance supplies from plants leads to high market costs of floral scents. Production of these fragrances from microorganisms is an alternative. In this work we applied the synthetic biology approach to construct a synthetic Escherichia coli system to produce linalool, which is the main component in floral scents. The E. coli system was synthesized in a laboratory by constructing 2 new BioBrick parts, GPPS and LIS Bricks. They were employed to construct GPPS and LIS generator devices by combing them with existing BioBricks from the Registry of BioBrick Standards; i.e., BBa_R0040, BBa_B0030, BBa_B0015. The synthetic E. coli system was created by transforming the generators into a non-scent E. coli YYC912 chassis. The system was tested by culturing synthetic cells in LB medium containing kanamycin and tetramycin. It was found that the synthetic E. coli successfully synthesized linalool and exhibited the strongest linalool scent at 96 hours of cultivation. This synthetic cell will be further used as a base strain for future construction of strains that can make higher linalool products for use on the industry level.
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360. Towards an artificial cell
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Daniel A. Hammer and Neha P. Kamat
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Protocell ,Artificial cell ,Biophysics ,Vesicle ,Nanotechnology ,Cell Biology ,Biology ,Biochemistry ,Surface-Active Agents ,Membrane ,Structural Biology ,Genetics ,Biological cell ,Bilayer membrane ,Artificial Cells ,Chemical control ,Genetic Engineering ,Molecular Biology ,Synthetic Cells ,Surface-active agents ,Phospholipids ,Microfabrication - Abstract
We are on the verge of producing “synthetic cells,” or protocells, in which some, many or all of the tasks of a real biological cell are harnessed into a synthetic platform. Such advances are made possible through genetic engineering, microfabrication technologies, and the development of cellular membranes from new surfactants that extend beyond phospholipids in stability and chemical control, and can be used to introduce designer functionality into membranes and cells. We review some of the recent advances in the development of synthetic cells and suggest future exciting directions.
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361. Excitable cell made of thermal proteinoids
- Author
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Aleksander T. Przybylski
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Statistics and Probability ,Membrane potential ,Excitable cell ,Materials science ,business.industry ,Applied Mathematics ,Cells ,Temperature ,Proteins ,Membranes, Artificial ,General Medicine ,Models, Biological ,General Biochemistry, Genetics and Molecular Biology ,Membrane Potentials ,Proteinoid ,Membrane ,Optics ,Modeling and Simulation ,Thermal ,Biophysics ,Electrochemistry ,Spectrophotometry, Ultraviolet ,Polarization (electrochemistry) ,business ,Synthetic Cells - Abstract
Such phenomena as electrical polarization across the membrane, electrical discharges, current-voltage characteristics, negative resistance and some light characteristics are described for synthetic cells made of thermal proteinoids. The thermal proteinoid cell is considered as a structural and functional model of the excitable natural cell.
- Published
- 1985
362. Interfacing synthetic cells with biological cells: An application of the synthetic method
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Fabio Mavelli, Pasquale Stano, Giordano Rampioni, Luisa Damiano, Livia Leoni, Rampioni, Giordano, Rampioni, G., Leoni, L., Mavelli, F., Damiano, L., Stano, P., and Ikegami T.,Virgo N.,Witkowski O.,Oka M.,Suzuki R.,Iizuka H.
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Software ,Computer architecture ,Natural processes ,Interfacing ,business.industry ,Computer science ,business ,Wetware ,Synthetic Cells - Abstract
The “synthetic method” is the methodological approach that guides current scientific attempts of understanding natural processes by the construction of hardware, software, and/or wetware models from scracth. It focuses the scientific inquiry on the generative mechanisms of the target processes, with the goal of testing and improving scientific hypotheses about them. This article presents an application of the synthetic method based on cutting-edge technology: the construction of “synthetic cells” (also known as “artificial cells”) capable of exchanging chemical signals (and, in this sense, of 'communicating') with biological cells.
363. Synthetic biology handbook
- Author
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Darren N. Nesbeth
- Subjects
Synthetic biology ,Workflow ,Code refactoring ,Combinatorial complexity ,Cad tools ,Nanotechnology ,Computational biology ,Biology ,computer.software_genre ,ENCODE ,computer ,Synthetic Cells ,Protein measurement - Abstract
STANDARDISING BIOLOGY Synthetic Biology: Culture and Bioethical Considerations Introduction Perceptions and Portrayals of Synthetic Biology in Popular Culture and Politics Synthetic Biology in Academic Literature Societal Risks and Responsibilities Posed by Synthetic Biology Governance of Synthetic Biology Conclusions Acknowledgements References Synthetic Biology Standards and Methods of DNA Assembly Introduction Theory and Considerations in Double-Stranded DNA Assembly Assembly Methods in Detail Distributed Construct Assembly Methods Building Combinatorial Complexity during Assembly Emerging Technologies and Conclusions Standardisation of DNA Assembly References Standardised Genetic Output Measurement Introduction Standardisation in Conventional Biology Standardisation in Synthetic Biology Adapting Current Techniques as Synthetic Biology Standards Towards Synthetic Biology Standards for Protein Measurement Conclusions Acknowledgements References ENGINEERING BIOLOGY WITH LEGACY TOOLS Bacterial Cells as Engineered Chassis Introduction Designing and Refactoring Bacterial Genes Bacterial Synthetic Gene Networks Genome-Scale Re-Engineering of Bacterial Cells Engineering Periplasmic Space Re-Imagining the Bacterial Surface and Glycocalyx References Eukaryotae Synthetica: Synthetic Biology in Yeast, Microalgae, and Mammalian Cells Introduction Remodelling Outer Cell Membranes as Engineered Chassis Surfaces Programmable Organelles Eukaryotic Genes and Their Synthetic Counterparts Networks of Synthetic Genes in Mammalian Cells Genome-Scale Engineering in Eukaryotes Synthetic Biotherapeutics References Synthetic Plants Tools and Resources Food Security and Sustainable Agriculture Plant Chassis Engineering to Improve Nutritive Value Synthetic Biology and Green Biopharms Fibre and Fuel Future of Plant Synthetic Biology References CONSTRUCTING NEW BIOLOGIES Theory and Construction of Semi-Synthetic Minimal Cells Introduction Autopoiesis and Minimal Life Semi-Synthetic Approach to the Construction of Minimal Cells Entrapment of Solutes inside Liposomes Biotechnological Perspectives of Synthetic Cells Concluding Remarks Acknowledgements References Design Tools for Synthetic Biology Introduction Mathematical Modelling in Synthetic Biology Part Registries Device Languages Modelling Languages and Tools Network Optimisation Part Engineering DNA Editing Tools CAD Tools and Workflow Systems Summary References New Genetic Codes Introduction Available Orthogonal Pairs and Their Host Systems Using UAAs to Encode Post-Translational Modifications UAAs as Synthetic Biology Tools to Detect Interactions Occurring within Cells Photo-Activatable UAAs Bioorthogonal Chemistry Orthogonal Ribosomes Systemic Optimization of New Genetic Codes References
364. FtsZ-Induced Shape Transformation of Coacervates
- Author
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Cees Dekker, Siddharth Deshpande, Federico Fanalista, Anson Lau, and Grzegorz Pawlik
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0301 basic medicine ,GTP' ,Biomedical Engineering ,Shape transformation ,Biointerface ,macromolecular substances ,Guanosine triphosphate ,010402 general chemistry ,01 natural sciences ,FtsZ ,General Biochemistry, Genetics and Molecular Biology ,Biomaterials ,03 medical and health sciences ,chemistry.chemical_compound ,biointerface ,Synthetic Cells ,coacervates ,Coacervate ,biology ,synthetic cell ,Chemistry ,0104 chemical sciences ,030104 developmental biology ,Polylysine ,Biophysics ,biology.protein ,bacteria ,protein bundling - Abstract
Recently, both the cellular and synthetic biology communities have expressed a strong interest in coacervates, membrane-less liquid droplets composed of densely packed multivalent molecules that form as a result of spontaneous phase separation. Here, it is studied how FtsZ, a protein that plays a key role in the bacterial division process, remodels coacervates made of polylysine (pLL) and guanosine triphosphate (GTP). It is shown that FtsZ strongly partitions at the surface of the coacervates and induces their disassembly due to the hydrolysis of GTP by FtsZ. Surprisingly, the coacervates are found to promote lateral interactions between FtsZ filaments, inducing the formation of an emanating network of FtsZ bundles that interconnect neighboring coacervates. Under mechanical stress, coacervates are shown to fracture, resulting in profound invaginations along their circumference. The results bring out the potential of coacervates for their use as membrane-free scaffolds for building synthetic cells as well as are possibly relevant for coacervation in prokaryotic cells.
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