522 results on '"Yu, Xiaomei"'
Search Results
502. Planar broadband and high absorption metamaterial using single nested resonator at terahertz frequencies.
- Author
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Wen Y, Ma W, Bailey J, Matmon G, Yu X, and Aeppli G
- Subjects
- Equipment Design, Equipment Failure Analysis, Surface Plasmon Resonance methods, Absorption, Radiation, Cobalt chemistry, Optical Devices, Surface Plasmon Resonance instrumentation, Terahertz Radiation, Transducers
- Abstract
A planar broadband metamaterial absorber with high absorptivity working at terahertz frequencies was designed and fabricated in this work. Two nested back-to-back split-ring resonators (BSRRs) constitute a single resonator, which achieves three strong resonances, with two of them merged into a broadband peak. Cobalt silicide and parylene-C were innovatively applied as ground plane and dielectric spacer. The nested BSRR absorber experimentally realizes a bandwidth of 0.66 THz with the absorptivity above 0.8, and the highest absorptivity reaches 0.97. Taking the central frequency at 2.74 THz, the measured FWHM is 47% and the Q factor is 2.13.
- Published
- 2014
- Full Text
- View/download PDF
503. Broadband metamaterial absorber at mid-infrared using multiplexed cross resonators.
- Author
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Ma W, Wen Y, and Yu X
- Abstract
In this paper, we theoretically and experimentally demonstrate broadband metamaterial absorbers that work in the mid-infrared regime. In the absorbers, two or four gold cross resonators with different sizes are multiplexed in a unit cell on SiO(2) spacing layer on top of gold ground plane. Compared with the single cross resonator absorbers with a Q factor of 6.39, the developed absorber with two cross resonators multiplexed reduces the Q factor to 3.78. When four different cross resonators are integrated, the Q factor drops to as low as 1.85, and the bandwidth almost covers the full mid-infrared regime from 3 μm to 5 μm with absorbance higher than 50%.
- Published
- 2013
- Full Text
- View/download PDF
504. Lycium barbarum polysaccharides induce Toll-like receptor 2- and 4-mediated phenotypic and functional maturation of murine dendritic cells via activation of NF-κB.
- Author
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Zhu J, Zhang Y, Shen Y, Zhou H, and Yu X
- Subjects
- Animals, CD11c Antigen metabolism, Cell Proliferation, Coculture Techniques, Dendritic Cells drug effects, Dendritic Cells immunology, Female, Interleukin-12 Subunit p40 metabolism, Lipopolysaccharides pharmacology, Lycium chemistry, Lymphocyte Culture Test, Mixed, Male, Mice, Mice, Inbred BALB C, Mice, Inbred C57BL, NF-kappa B metabolism, Phenotype, Signal Transduction, Dendritic Cells metabolism, Drugs, Chinese Herbal pharmacology, Toll-Like Receptor 2 metabolism, Toll-Like Receptor 4 metabolism
- Abstract
Dendritic cells (DCs) are potent antigen‑presenting cells that play pivotal roles in the initiation of primary immune responses. Lycium barbarum polysaccharides (LBPs) are known to have a variety of immunomodulatory functions. However, the cellular and molecular mechanisms underlying their therapeutic effects are poorly understood. In this study, we report that LBPs induce phenotypic and functional maturation of DCs. LBPs upregulated DC expression of I‑A/I‑E and CD11c, enhanced DC allostimulatory activity and induced IL‑12p40 production. Furthermore, the activity of LBPs on DCs was significantly reduced by treating the cells with anti‑TLR2 or anti‑TLR4 antibody prior to LBPs, indicating that both are possible receptors of LBPs. Maturation of DCs by LBPs was able to directly activate the nuclear transcription factor NF‑κB p65. The results revealed that LBP stimulation induces the phenotypic and functional maturation of DCs via TLR2- and/or TLR4-mediated NF‑κB signaling pathways.
- Published
- 2013
- Full Text
- View/download PDF
505. Polarization-independent dual-band terahertz metamaterial absorbers based on gold/parylene-C/silicide structure.
- Author
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Wen Y, Ma W, Bailey J, Matmon G, Yu X, and Aeppli G
- Subjects
- Absorption, Biocompatible Materials chemistry, Cobalt chemistry, Computer Simulation, Equipment Design, Surface Properties, Terahertz Spectroscopy methods, Gold chemistry, Polymers chemistry, Silicon chemistry, Terahertz Spectroscopy instrumentation, Xylenes chemistry
- Abstract
We design, fabricate, and characterize dual-band terahertz (THz) metamaterial absorbers with high absorption based on structures consisting of a cobalt silicide (Co-Si) ground plane, a parylene-C dielectric spacer, and a metal top layer. By combining two periodic metal resonators that couple separately within a single unit cell, a polarization-independent absorber with two distinct absorption peaks was obtained. By varying the thickness of the dielectric layer, we obtain absorptivity of 0.76 at 0.76 THz and 0.97 at 2.30 THz, which indicates the Co-Si ground plane absorbers present good performance.
- Published
- 2013
- Full Text
- View/download PDF
506. Associations of plasma phospholipid fatty acids with plasma homocysteine in Chinese vegetarians.
- Author
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Huang T, Yu X, Shou T, Wahlqvist ML, and Li D
- Subjects
- Adult, China, Female, Humans, Male, Middle Aged, Phospholipids chemistry, Diet, Vegetarian, Fatty Acids blood, Homocysteine blood, Phospholipids blood
- Abstract
The association of plasma phospholipid (PL) fatty acid composition with plasma homocysteine (Hcy) in Chinese vegetarians is not understood. The main aim of the present study was to investigate the plasma PL fatty acid status, and its association with plasma Hcy in Chinese vegetarians and omnivores. A total of 103 male vegetarians and 128 male omnivores were recruited in Linyin Temple, Hangzhou. Plasma Hcy and PL fatty acid concentrations were determined by standard methods. Compared with omnivores, plasma PL n-3 PUFA (P< 0·001), 22 : 6n-3 (P< 0·001), 22 : 5n-6 (P= 0·021), 22 : 2n-6 (P< 0·001) and SFA (P= 0·017) were significantly lower, while plasma PL n-6 PUFA (P= 0·007) and total PUFA (P< 0·001) were significantly higher in vegetarians. The prevalence of hyperhomocysteinaemia (HHcy) in vegetarians (26·47 %) was significantly higher than that in omnivores (13·28 %). In vegetarians, plasma PL 22 : 6n-3 (r − 0·257, P= 0·046) was significantly negatively associated with plasma Hcy. In omnivores, plasma PL 18 : 1n-7 (r 0·237, P= 0·030) was significantly positively associated with plasma Hcy. Plasma PL 22 : 6n-3 (r − 0·217, P= 0·048) was negatively associated with plasma Hcy in omnivores. Plasma PL SFA were positively associated with the prevalence of HHcy. It would seem appropriate for vegetarians to increase their dietary n-3 PUFA and decrease dietary SFA, and thus reduce the risk of HHcy.
- Published
- 2013
- Full Text
- View/download PDF
507. Low docosahexaenoic acid content in plasma phospholipids is associated with increased non-alcoholic fatty liver disease in China.
- Author
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Zheng JS, Xu A, Huang T, Yu X, and Li D
- Subjects
- Adult, Alanine Transaminase blood, Blood Glucose, Blood Pressure, Body Mass Index, Case-Control Studies, China epidemiology, Cholesterol, HDL blood, Fatty Acids blood, Fatty Liver complications, Fatty Liver epidemiology, Female, Humans, Logistic Models, Male, Metabolic Syndrome blood, Metabolic Syndrome complications, Metabolic Syndrome epidemiology, Middle Aged, Multivariate Analysis, Non-alcoholic Fatty Liver Disease, Odds Ratio, Prevalence, Risk Factors, Docosahexaenoic Acids blood, Fatty Liver blood, Phospholipids blood
- Abstract
A large proportion of the Chinese population is now at risk of non-alcoholic fatty liver disease (NAFLD). We aimed to investigate the relationship between plasma phospholipids (PL) fatty acids and the risk of NAFLD. One hundred NAFLD patients and 100 healthy subjects were recruited in Hangzhou, China. Plasma PL and selected biochemical and hematological parameters were analyzed by using standard methods. Stepwise logistic regression was used to identify independent risk factors of NAFLD. Plasma PL total saturated fatty acid (SFA), C20:3n-6, serum alanine aminotransferase, high-density lipoprotein cholesterol, and body mass index were independent risk factors of NAFLD. The risk of NAFLD was significantly increased with higher quartiles of plasma PL total SFA (P for trend = 0.028) and C20:3n-6 (P for trend <0.001); plasma PL docosahexaenoic acid (C22:6n-3) was significantly lower in NAFLD patients than in controls (P = 0.032) and the OR of NAFLD in the highest quartile of C22:6n-3 was 0.41 (95 % CI = 0.17-0.97) compared with the lowest quartile. In conclusion, plasma PL total SFA and C20:3n-6 are positively correlated with the risk of NAFLD, while C22:6n-3 is negatively correlated with the risk of NAFLD.
- Published
- 2012
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508. A novel optical readout infrared FPA imaging system with fiber reference channel.
- Author
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Chu X, Zhao Y, Dong L, Jia Q, Kong L, Yu X, Liu X, Gong C, and Jin Y
- Subjects
- Equipment Design, Equipment Failure Analysis, Infrared Rays, Fiber Optic Technology instrumentation, Image Enhancement instrumentation, Photometry instrumentation, Thermography instrumentation
- Abstract
A novel fiber reference optical readout method was proposed in the bi-material micro cantilever infrared imaging system, which consists of an infrared imaging channel, an optical readout channel and a fiber reference channel. The fiber reference channel is used to monitor the intensity fluctuation of the light source, and provide a signal to correct the distortion of the infrared images from the optical readout channel. Comparing with the typical optical readout method without any references, the noise equivalent temperature difference (NETD) of such an infrared imaging system with the fiber reference optical readout method can be reduced by about 33% and edges of the IR images become clearer., (© 2012 Optical Society of America)
- Published
- 2012
- Full Text
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509. Optical readout method based on a narrow-strip filter for microcantilever array sensing.
- Author
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Gong C, Hui M, Dong L, Zhao Y, Yu X, and Liu X
- Abstract
An effective optical readout approach based on a narrow-strip filter is presented to detect bends of a bimaterial microcantilever focal plane array, by which light intensity of the image plane (CCD image sensor plane) can be increased and its uniformity on the image plane effectively enhanced. It reduces the noise equivalent temperature difference of the microcantilever focal plane array IR imaging system and improves uniformity of the IR images. A comparative experiment is designed to verify effectiveness. The experimental results show that the proposed method has advantages of preferable effect.
- Published
- 2012
- Full Text
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510. Double triangular prism filter based on the optical-readout method in a microelectromechanical infrared imaging system.
- Author
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Yin G, Zhao Y, Dong L, Jia Q, Zhu W, Kong L, Liu X, Ding L, Yu X, and Jin Y
- Abstract
This paper presents a novel filtering method with a double triangular prism in an optical-readout thermal imaging system. First, the working principle of this system is described in detail, followed by the analysis of sensitivity. Then, infrared images of hands are obtained. On the basis of the analysis, it is concluded that this filtering method, whose noise equivalent temperature difference (NETD) can reach 145 mK, is effective in obtaining high-quality images. Finally, comparing the filtering method with a knife-edge filter, we can draw the conclusion that the filtering method can effectively improve image quality (the value of NETD is less than that of a knife-edge filter).
- Published
- 2012
- Full Text
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511. Changes in growth hormone (GH), GH receptor, and GH signal transduction in hippocampus of congenital hypothyroid rats.
- Author
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Tang H, Zhang Y, Yu X, Song J, Xu C, and Wan Y
- Subjects
- Animals, Blotting, Western, Congenital Hypothyroidism pathology, Congenital Hypothyroidism physiopathology, Disease Models, Animal, Female, Hippocampus pathology, Hippocampus physiopathology, Maze Learning physiology, Rats, Rats, Sprague-Dawley, Reverse Transcriptase Polymerase Chain Reaction, Congenital Hypothyroidism metabolism, Growth Hormone metabolism, Hippocampus metabolism, Receptors, Somatotropin metabolism, Signal Transduction physiology
- Abstract
Recent studies have shown that, like thyroid hormone (TH), growth hormone (GH) plays a critical role in development of the brain. However, it is still unclear whether the functions of the two hormones are locally orchestrated in the brain or whether TH has a permissive effect on GH in the central nervous system as it does in the periphery. To address this question, the present study investigated the changes in local expression of GH and GH receptor (GHR) and the activity of GH signaling molecules in the hippocampus of congenitally hypothyroid (CHT) rats. As demonstrated by morphometric measurements and the Y-maze test, CHT rats had decreased neurons and weaker Nissl staining in the stratum pyramidal/granule in the hippocampus and a reduced acquisition of safe place recognition memory. Analyses of QPCR and Western blot revealed a substantially decreased hippocampal expression of GH and GHR, accompanied by a corresponding decrease in phosphorylation of JAK2 and STAT5 in the CHT rats. These changes were, at least in part, corrected by systemic supplement of T3. The findings provide the first direct evidence suggesting that the functional autocrine and paracrine regulation of GH in the CNS is orchestrated by TH., (Copyright © 2010 Wiley-Liss, Inc.)
- Published
- 2011
- Full Text
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512. DE NOVO ASYMMETRIC APPROACH TO THE DISACCHARIDE PORTION OF SCH-47554.
- Author
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Yu X, Li M, and O'Doherty GA
- Abstract
A method for the asymmetric synthesis of the disaccharide portion of SCH-47554 has been developed in 6 steps. The route is shorter than the reported route to a related disaccharide. The route involves the use of the Noyori reduction to establish the asymmetry of the d- and l-sugar portion of the molecule. Diastereoselective Pd-glycosylation reaction and subsequent post-glycosylation transformation are used to establish the remaining stereocenter.
- Published
- 2011
- Full Text
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513. Holographic illumination in optical readout focal plane array infrared imaging system.
- Author
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Liu M, Zhao Y, Dong L, Yu X, Liu X, Hui M, You J, and Yi Y
- Abstract
An IR imaging system based on a microelectromechanical system (MEMS) microcantilever is uncooled, low-cost, and more reliable than traditional systems. However, it is difficult to avoid unwanted shape distortions in fabrication, which can degrade image quality in many ways, so we use holography to compensate for these shape distortions in an optical readout focal plane array (FPA) IR imaging system. The experiment shows that it is a feasible way to improve system performance, especially when it is too difficult to perfect the techniques of an FPA fabrication.
- Published
- 2009
- Full Text
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514. De novo asymmetric synthesis and biological evaluation of the trisaccharide portion of PI-080 and vineomycin B2.
- Author
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Yu X and O'Doherty GA
- Subjects
- Anthraquinones chemistry, Cell Line, Tumor, Cell Survival drug effects, Deoxy Sugars chemistry, Humans, Molecular Structure, Stereoisomerism, Trisaccharides chemical synthesis, Trisaccharides pharmacology, Anthraquinones chemical synthesis, Anthraquinones pharmacology, Trisaccharides chemistry
- Abstract
A highly enantio- and diastereoselective synthesis of an alpha-L-aculose, alpha-L-rhodinose, and beta-D-olivose trisaccharide is described. The key transformations include the palladium-catalyzed glycosylation, Myers' reductive rearrangement, diastereoselective dihydroxylation, and regioselective Mitsunobu inversion. Significant apoptotic antitumor activity was found for this trisaccharide, which has implication for vineomycin B2 and PI-080 structure-activity relationship.
- Published
- 2008
- Full Text
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515. Diacylglycerol-induced improvement of whole-body insulin sensitivity in type 2 diabetes mellitus: a long-term randomized, double-blind controlled study.
- Author
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Li D, Xu T, Takase H, Tokimitsu I, Zhang P, Wang Q, Yu X, and Zhang A
- Subjects
- Adult, Aged, Biomarkers blood, Body Mass Index, Body Weight drug effects, Body Weight physiology, Cardiovascular Diseases blood, Diabetes Mellitus, Type 2 blood, Diglycerides administration & dosage, Double-Blind Method, Female, Humans, Hypertriglyceridemia blood, Hypertriglyceridemia diet therapy, Insulin blood, Male, Middle Aged, Obesity blood, Obesity diet therapy, Risk Factors, Treatment Outcome, Triglycerides administration & dosage, Triglycerides pharmacology, Blood Glucose metabolism, Cardiovascular Diseases diet therapy, Diabetes Mellitus, Type 2 diet therapy, Diglycerides pharmacology, Insulin metabolism
- Abstract
Background & Aims: Diacylglycerol oil has been shown to lower postprandial and fasting serum triacylglycerol levels and reduce body fat. The aim of this study was to investigate the effect of diacylglycerol oil on risk factors of type 2 diabetes mellitus (DM) and cardiovascular disease in type 2 DM patients., Methods: This was a double-blind controlled parallel study with 127 type 2 DM patients (aged 40-65) recruited in Hangzhou, China. All subjects consumed triacylglycerol oil in the lead-in period (14 days), then they were randomly divided into two groups and consumed diacylglycerol or triacylglycerol oil with a similar fatty acid composition (25 g/day) for 120 days. Blood samples were collected on days 0, 60 and 120 and risk factors of type 2 DM and cardiovascular disease and biochemical parameters were measured by standard methods., Results: There were a total of 112 subjects who completed the study. Diet intake did not differ significantly between groups. Body weight, BMI, waist circumference, HOMA-IR, serum insulin and leptin levels were significantly reduced from baseline in the diacylglycerol oil group but not in the triacylglycerol oil group. Serum glucose was also significantly improved in patients with higher glucose levels at baseline (>7.00 mmol/L) in the diacylglycerol oil group. Parameters of liver and kidney functions and essential fatty acids in serum phospholipids did not differ between groups., Conclusions: Diacylglycerol oil consumption improved biomarkers and anthropometric parameters of type 2 DM compared with triacylglycerol oil. No adverse reactions were observed with diacylglycerol oil consumption for type 2 DM patients. Diacylglycerol oil has an equivalent bioavailability as triacylglycerol oil in relation to providing essential fatty acids.
- Published
- 2008
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516. Expression of the ErbB4 receptor causes reversal regulation of PP2A in the Shc signal transduction pathway in human cancer cells.
- Author
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Yumoto N, Yu X, and Hatakeyama M
- Subjects
- Animals, Disease Progression, Epidermal Growth Factor pharmacology, Humans, Okadaic Acid pharmacology, Phenotype, Phosphoprotein Phosphatases physiology, Phosphorylation drug effects, Receptor, ErbB-4, Shc Signaling Adaptor Proteins, Src Homology 2 Domain-Containing, Transforming Protein 1, Tumor Cells, Cultured, Adaptor Proteins, Signal Transducing metabolism, ErbB Receptors metabolism, Phosphoprotein Phosphatases metabolism, Signal Transduction
- Abstract
Expression of ErbB4 receptor is correlated with the incidence of non-metastatic types of human cancers, whereas the overexpression of other ErbB receptor families (ErbB1/EGFR, ErbB2 and ErbB3) is correlated to the formation of metastatic tumors. However, the molecular mechanism underlying this phenomenon has been unclear. Earlier, we demonstrated that okadaic acid (OA), an inhibitor of a serine/threonine phosphatase PP2A, stimulated the growth hormone-induced ERK phosphorylation in the wild type Chinese hamster ovary (CHO) cells and the cells expressing ErbB1 receptor, but suppressed ERK activation in CHO cells that express ErbB4 receptor. PP2A had been understood as a negative regulator of the growth hormone-stimulated signal transduction pathways, however, this observation suggested that expression of ErbB4 receptor reversed the regulation of PP2A in the ErbB4 signalling pathway. In this study, we found that OA suppressed phosphorylation of Shc at Tyr317, therefore it down-regulated ERK phosphorylation in the ErbB4 expressing CHO cells. Accordingly, basal PP2A contributed to the phosphorylation of Shc Tyr317 in ErbB4 expressing CHO cells, nevertheless it had been reported that PP2A negatively regulates Shc tyrosine phosphorylation in the EGF- or IGF-I-induced signalling pathways. By testing OA for human cancer cell lines that express different types of ErbB receptors, we found that ErbB4 receptor expression was accompanied with positive regulation of PP2A for phosphorylation of Shc Tyr317 and its downstream ERK phosphorylation in MCF-7 and SK-OV-3 cell lines, but not in LNCaP and PC-3 cells. Thus, PP2A regulates the ERK activity in a cell-specific manner, and it is speculated that distinct regulation of PP2A in the ErbB4 receptor signalling pathway may cause a difference in progression of cancer phenotypes.
- Published
- 2006
- Full Text
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517. Characterization of a novel continuous supermacroporous monolithic cryogel embedded with nanoparticles for protein chromatography.
- Author
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Yao K, Yun J, Shen S, Wang L, He X, and Yu X
- Subjects
- Blood Proteins chemistry, Cryogels, Ferric Compounds chemistry, Fibronectins chemistry, Freezing, Hydrogels, Microscopy, Electron, Transmission, Porosity, Serum Albumin, Bovine isolation & purification, Acrylic Resins chemistry, Chromatography, Liquid methods, Nanostructures chemistry, Proteins isolation & purification
- Abstract
A novel continuous supermacroporous monolithic cryogel embedded with nanometer-size particles was prepared by the radical cryogenic co-polymerization of acrylamide (AAm), N,N'-methylene-bis-acrylamide (MBAAm), allyl glycidyl ether (AGE) and the dispersed surfactant-stabilized Fe3O4 nanoparticles under the freezing-temperature variation condition in a glass column. This special separation matrix has interconnected supermacropores with pore size of 10-50 microm, which permit the free-passage of microbial cells or cell debris in the culture fluids and then is interest in downstream processes. The axial liquid dispersion coefficients of the new continuous supermacroporous monolithic bed at different liquid flow rates were obtained by measuring residence time distributions (RTDs) using tracer pulse-response method. The experimental results showed that the axial liquid dispersion within the bed was weak in a wide water flow rate of 0.5-15 cm/min. The axial dispersion coefficient was found to be increased exponentially with the increase of liquid flow rate. Chromatographic process of bovine serum albumin (BSA) in the cryogel monolithic bed was carried out to reveal the protein breakthrough and elution characteristics. Compared with other reported cryogel beds in literature, the protein adsorption capacity of the present cryogel bed was improved due to the embedded nano-sized solid adsorbents in the gel matrix. Microstructure morphology of the embedded nanoparticles in the cryogel and the gel matrix structure were also analyzed by scanning electron microscopy (SEM) and transmission electron microscopy (TEM) in this paper.
- Published
- 2006
- Full Text
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518. Uric acid status and its correlates in Hangzhou urban population.
- Author
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Li D, Yu X, Zhou X, Siriamornpun S, and Wahlqvist ML
- Subjects
- Body Mass Index, Cardiovascular Diseases blood, China epidemiology, Cross-Sectional Studies, Feces chemistry, Female, Humans, Male, Middle Aged, Risk Factors, Sex Factors, Urban Health, Uric Acid urine, Cardiovascular Diseases epidemiology, Creatinine blood, Lipids blood, Uric Acid blood
- Abstract
The aim of this study was to investigate the uric acid status and its correlates in relation to selected cardiovascular risk factors in a cross-sectional study in Hangzhou, China. In this cross-sectional study, 186 male (56 +/- 14 yrs) and 85 female (55 +/- 11 yrs) free-living subjects were recruited from the Hangzhou metropolitan area, China. Their physiological parameters were measured. Each subject gave fasting blood, urine and faeces samples, from which serum uric acid and other parameters of biochemistry and haematology were measured by standard methods. Serum uric concentration was 329 +/- 69 micromol/L for male and 237 +/- 53 micromol/L for female (P < 0.0001). Compared with female subjects, males had significantly higher BMI (P = 0.0215), serum triacylglycerol (TAG) (P = 0.0012) and creatinine (P<0.0001), and significantly lower total cholesterol (TC) (P = 0.0013) and HDL-C (P < 0.0001). In the partial correlation analysis, after controlling for sex, age and BMI, serum uric acid was significantly positively correlated with serum concentrations of TC (r = 0.205, P = 0.001), LDL-C (r = 0.229, P < 0.001),TAG (r = 0.172, P = 0.008) and creatinine (r = 0.330, P < 0.001). The results from the present study indicated that prevalence rates of hyperuricaemia are lower in Hangzhou than in Beijing; increased serum uric acid concentration was associated with a cluster of cardiovascular risk factors for the Hangzhou urban population.
- Published
- 2006
519. Novel mechanism of interaction of p85 subunit of phosphatidylinositol 3-kinase and ErbB3 receptor-derived phosphotyrosyl peptides.
- Author
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Suenaga A, Takada N, Hatakeyama M, Ichikawa M, Yu X, Tomii K, Okimoto N, Futatsugi N, Narumi T, Shirouzu M, Yokoyama S, Konagaya A, and Taiji M
- Subjects
- Amino Acid Motifs, Cell Line, Tumor, Cytoplasm metabolism, Electron Spin Resonance Spectroscopy, Humans, Models, Molecular, Peptides chemistry, Protein Binding, Protein Structure, Tertiary, Thermodynamics, Peptides metabolism, Phosphatidylinositol 3-Kinases chemistry, Phosphatidylinositol 3-Kinases metabolism, Phosphotyrosine metabolism, Protein Subunits chemistry, Protein Subunits metabolism, Receptor, ErbB-3 metabolism
- Abstract
Ligand-activated and tyrosine-phosphorylated ErbB3 receptor binds to the SH2 domain of the p85 subunit of phosphatidylinositol 3-kinase and initiates intracellular signaling. Here, we studied the interactions between the N- (N-SH2) and C- (C-SH2) terminal SH2 domains of the p85 subunit of the phosphatidylinositol 3-kinase and eight ErbB3 receptor-derived phosphotyrosyl peptides (P-peptides) by using molecular dynamics, free energy, and surface plasmon resonance (SPR) analyses. In SPR analysis, these P-peptides showed no binding to the C-SH2 domain, but P-peptides containing a phospho-YXXM or a non-phospho-YXXM motif did bind to the N-SH2 domain. The N-SH2 domain has two phosphotyrosine binding sites in its N- (N1) and C- (N2) terminal regions. Interestingly, we found that P-peptides of pY1180 and pY1241 favored to bind to the N2 site, although all other P-peptides showed favorable binding to the N1 site. Remarkably, two phosphotyrosines, pY1178 and pY1243, which are just 63 amino acids apart from the pY1241 and pY1180, respectively, showed favorable binding to the N1 site. These findings indicate a possibility that the pair of phosphotyrosines, pY1178-pY1241 or pY1243-pY1180, will fold into an appropriate configuration for binding to the N1 and N2 sites simultaneously. Our model structures of the cytoplasmic C-terminal domain of ErbB3 receptor also strongly supported the speculation. The calculated binding free energies between the N-SH2 domain and P-peptides showed excellent qualitative agreement with SPR data with a correlation coefficient of 0.91. The total electrostatic solvation energy between the N-SH2 domain and P-peptide was the dominant factor for its binding affinity.
- Published
- 2005
- Full Text
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520. Reversibly switchable DNA nanocompartment on surfaces.
- Author
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Mao Y, Luo C, Deng W, Jin G, Yu X, Zhang Z, Ouyang Q, Chen R, and Yu D
- Subjects
- Base Pair Mismatch, Base Pairing, DNA ultrastructure, Microscopy, Atomic Force, Polymorphism, Single Nucleotide, Biosensing Techniques methods, DNA chemistry, Nanotechnology methods
- Abstract
Biological macromolecules have been used to fabricate many nanostructures, biodevices and biomimetics because of their physical and chemical properties. But dynamic nanostructure and biomachinery that depend on collective behavior of biomolecules have not been demonstrated. Here, we report the design of DNA nanocompartments on surfaces that exhibit reversible changes in molecular mechanical properties. Such molecular nanocompartments are used to encage molecules, switched by the collective effect of Watson-Crick base-pairing interactions. This effect is used to perform molecular recognition. Furthermore, we found that 'fuel' strands with single-base variation cannot afford an efficient closing of nanocompartments, which allows highly sensitive label-free DNA array detection. Our results suggest that DNA nanocompartments can be used as building blocks for complex biomaterials because its core functions are independent of substrates and mediators.
- Published
- 2004
- Full Text
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521. Molecular dynamics, free energy, and SPR analyses of the interactions between the SH2 domain of Grb2 and ErbB phosphotyrosyl peptides.
- Author
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Suenaga A, Hatakeyama M, Ichikawa M, Yu X, Futatsugi N, Narumi T, Fukui K, Terada T, Taiji M, Shirouzu M, Yokoyama S, and Konagaya A
- Subjects
- Computer Simulation, ErbB Receptors chemistry, GRB2 Adaptor Protein, Glutathione Transferase metabolism, Humans, Kinetics, Ligands, Peptide Fragments chemistry, Phosphotyrosine, Protein Binding, Protein Conformation, Protein Folding, Proteins chemistry, Receptor, ErbB-4, Recombinant Fusion Proteins isolation & purification, Recombinant Fusion Proteins metabolism, Thermodynamics, Tyrosine chemistry, Tyrosine metabolism, Adaptor Proteins, Signal Transducing, ErbB Receptors metabolism, Peptide Fragments metabolism, Proteins metabolism, Tyrosine analogs & derivatives, src Homology Domains
- Abstract
We studied the interactions between the SH2 domain of growth factor receptor binding protein 2 (Grb2) and ErbB receptor-derived phosphotyrosyl peptides using molecular dynamics, free energy calculations, and surface plasmon resonance (SPR) analysis. Binding free energies for nine phosphotyrosyl peptides were calculated using the MM-PBSA continuum solvent method, and excellent qualitative agreement with the SPR experimental data, with a correlation coefficient of 0.92, was obtained. Consistent with previous experimental findings, phosphotyrosyl peptides with the consensus sequence pYXNX showed favorable binding affinity for the Grb2. Unexpectedly, phosphotyrosyl peptides with the consensus sequence pYQQD, which had not shown any specific binding affinity for the Grb2 in earlier studies, also showed favorable binding affinity for the Grb2 in our experimental and computational analyses. Component analysis of the calculated binding free energies revealed that van der Waals interaction between the Grb2 and the phosphotyrosyl peptide was the dominant factor for specificity and binding affinity. These results indicate that current methods of estimating binding free energies are efficient for obtaining important information about protein-protein interactions, which are essential for the transmission of signals in cellular signaling pathways.
- Published
- 2003
- Full Text
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522. [Cause and measure of short of quality control on Chinese medicine herbs].
- Author
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Chen J, Chen L, An Z, Yu X, and Zhan Y
- Subjects
- Animals, Drug Contamination prevention & control, Quality Control, Drugs, Chinese Herbal standards, Materia Medica standards, Plants, Medicinal, Technology, Pharmaceutical standards
- Abstract
Chinese medicine is short of quality control for three reasons. Firstly, near 90 percent Chinese medicine herbs are lack of quality standards and hard to be evaluated. Secondly, basal study falls behind relatively, which limites development speed of quality control and quality standard. Finally, Chinese medicine herbs haven't uniform refine operating norm. We must strengthen basal study, constitute the inspection norm of Chinese medicine herbs quality and establish perfect technical supervise system as fast as possible.
- Published
- 2003
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