677 results on '"Rakshit, S."'
Search Results
652. Effect of cataract surgery and pupil dilation on iris pattern recognition for personal authentication.
- Author
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Dhir L, Habib NE, Monro DM, and Rakshit S
- Subjects
- Cohort Studies, Humans, Iris drug effects, Prospective Studies, Pupil drug effects, Cataract Extraction, Iris anatomy & histology, Mydriatics pharmacology, Pattern Recognition, Automated methods, Pupil physiology
- Abstract
Purpose: The purpose of this study was to investigate the effect of cataract surgery and pupil dilation on iris pattern recognition for personal authentication., Methods: Prospective non-comparative cohort study. Images of 15 subjects were captured before (enrolment), and 5, 10, and 15 min after instillation of mydriatics before routine cataract surgery. After cataract surgery, images were captured 2 weeks thereafter. Enrolled and test images (after pupillary dilation and after cataract surgery) were segmented to extract the iris. This was then unwrapped onto a rectangular format for normalization and a novel method using the Discrete Cosine Transform was applied to encode the image into binary bits. The numerical difference between two iris codes (Hamming distance, HD) was calculated. The HD between identification and enrolment codes was used as a score and was compared with a confidence threshold for specific equipment, giving a match or non-match result. The Correct Recognition Rate (CRR) and Equal Error Rates (EERs) were calculated to analyse overall system performance., Results: After cataract surgery, perfect identification and verification was achieved, with zero false acceptance rate, zero false rejection rate, and zero EER. After pupillary dilation, non-elastic deformation occurs and a CRR of 86.67% and EER of 9.33% were obtained., Conclusions: Conventional circle-based localization methods are inadequate. Matching reliability decreases considerably with increase in pupillary dilation. Cataract surgery has no effect on iris pattern recognition, whereas pupil dilation may be used to defeat an iris-based authentication system.
- Published
- 2010
- Full Text
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653. A novel approach for large-scale polypeptide folding based on elastic networks using continuous optimization.
- Author
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Rakshit S and Ananthasuresh GK
- Subjects
- Algorithms, Databases, Protein, Muramidase chemistry, Oligopeptides chemistry, Oligopeptides metabolism, Protein Structure, Secondary, Thermodynamics, Ubiquitin chemistry, Models, Molecular, Peptides chemistry, Peptides metabolism, Protein Folding
- Abstract
We present a new computationally efficient method for large-scale polypeptide folding using coarse-grained elastic networks and gradient-based continuous optimization techniques. The folding is governed by minimization of energy based on Miyazawa-Jernigan contact potentials. Using this method we are able to substantially reduce the computation time on ordinary desktop computers for simulation of polypeptide folding starting from a fully unfolded state. We compare our results with available native state structures from Protein Data Bank (PDB) for a few de-novo proteins and two natural proteins, Ubiquitin and Lysozyme. Based on our simulations we are able to draw the energy landscape for a small de-novo protein, Chignolin. We also use two well known protein structure prediction software, MODELLER and GROMACS to compare our results. In the end, we show how a modification of normal elastic network model can lead to higher accuracy and lower time required for simulation.
- Published
- 2010
- Full Text
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654. N-acetyl cysteine enhances imatinib-induced apoptosis of Bcr-Abl+ cells by endothelial nitric oxide synthase-mediated production of nitric oxide.
- Author
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Rakshit S, Bagchi J, Mandal L, Paul K, Ganguly D, Bhattacharjee S, Ghosh M, Biswas N, Chaudhuri U, and Bandyopadhyay S
- Subjects
- Annexin A5 pharmacology, Apoptosis drug effects, Benzamides, Cell Line, Tumor, Cell Survival drug effects, Cell Survival physiology, Fusion Proteins, bcr-abl metabolism, Hematologic Neoplasms metabolism, Humans, Imatinib Mesylate, Leukemia, Myelogenous, Chronic, BCR-ABL Positive enzymology, Membrane Potential, Mitochondrial physiology, Nitric Oxide metabolism, Nitric Oxide Synthase Type III drug effects, Reactive Oxygen Species analysis, Up-Regulation drug effects, Up-Regulation physiology, Acetylcysteine pharmacology, Apoptosis physiology, Free Radical Scavengers pharmacology, Nitric Oxide Synthase Type III metabolism, Piperazines pharmacology, Protein Kinase Inhibitors pharmacology, Protein-Tyrosine Kinases antagonists & inhibitors, Pyrimidines pharmacology
- Abstract
Introduction: Imatinib, a small-molecule inhibitor of the Bcr-Abl kinase, is a successful drug for treating chronic myeloid leukemia (CML). Bcr-Abl kinase stimulates the production of H(2)O(2), which in turn activates Abl kinase. We therefore evaluated whether N-acetyl cysteine (NAC), a ROS scavenger improves imatinib efficacy., Materials and Methods: Effects of imatinib and NAC either alone or in combination were assessed on Bcr-Abl(+) cells to measure apoptosis. Role of nitric oxide (NO) in NAC-induced enhanced cytotoxicity was assessed using pharmacological inhibitors and siRNAs of nitric oxide synthase isoforms. We report that imatinib-induced apoptosis of imatinib-resistant and imatinib-sensitive Bcr-Abl(+) CML cell lines and primary cells from CML patients is significantly enhanced by co-treatment with NAC compared to imatinib treatment alone. In contrast, another ROS scavenger glutathione reversed imatinib-mediated killing. NAC-mediated enhanced killing correlated with cleavage of caspases, PARP and up-regulation and down regulation of pro- and anti-apoptotic family of proteins, respectively. Co-treatment with NAC leads to enhanced production of nitric oxide (NO) by endothelial nitric oxide synthase (eNOS). Involvement of eNOS dependent NO in NAC-mediated enhancement of imatinib-induced cell death was confirmed by nitric oxide synthase (NOS) specific pharmacological inhibitors and siRNAs. Indeed, NO donor sodium nitroprusside (SNP) also enhanced imatinib-mediated apoptosis of Bcr-Abl(+) cells., Conclusion: NAC enhances imatinib-induced apoptosis of Bcr-Abl(+) cells by endothelial nitric oxide synthase-mediated production of nitric oxide.
- Published
- 2009
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655. Palladium-catalyzed amidation of unactivated C(sp(3))-H bonds: from anilines to indolines.
- Author
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Neumann JJ, Rakshit S, Dröge T, and Glorius F
- Subjects
- Aniline Compounds chemistry, Catalysis, Cyclization, Indoles chemistry, Indoles chemical synthesis, Palladium chemistry
- Published
- 2009
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656. Generation and expression of a Hoxa11eGFP targeted allele in mice.
- Author
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Nelson LT, Rakshit S, Sun H, and Wellik DM
- Subjects
- Animals, Female, Green Fluorescent Proteins genetics, Homeodomain Proteins genetics, Male, Mice, Mice, Transgenic, Neural Tube embryology, Organ Specificity physiology, Recombinant Fusion Proteins genetics, Urogenital System embryology, Alleles, Green Fluorescent Proteins biosynthesis, Homeodomain Proteins biosynthesis, Organogenesis physiology, Recombinant Fusion Proteins biosynthesis
- Abstract
Hox genes are crucial for body axis specification during embryonic development. Hoxa11 plays a role in anteroposterior patterning of the axial skeleton, development of the urogenital tract of both sexes, and proximodistal patterning of the limbs. Hoxa11 expression is also observed in the neural tube. Herein, we report the generation of a Hoxa11eGFP targeted knock-in allele in mice in which eGFP replaces the first coding exon of Hoxa11 as an in-frame fusion. This allele closely recapitulates the reported mRNA expression patterns for Hoxa11. Hoxa11eGFP can be visualized in the tail, neural tube, limbs, kidneys, and reproductive tract of both sexes. Additionally, homozygous mutants recapitulate reported phenotypes for Hoxa11 loss of function mice, exhibiting loss of fertility in both males and females. This targeted mouse line will prove useful as a vital marker for Hoxa11 protein localization during control (heterozygous) or mutant organogenesis., (Copyright (c) 2008 Wiley-Liss, Inc.)
- Published
- 2008
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657. Resonance energy transfer from beta-cyclodextrin-capped ZnO:MgO nanocrystals to included Nile Red guest molecules in aqueous media.
- Author
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Rakshit S and Vasudevan S
- Subjects
- Macromolecular Substances chemistry, Materials Testing, Molecular Conformation, Nanostructures ultrastructure, Nanotechnology methods, Particle Size, Surface Properties, Water chemistry, Crystallization methods, Fluorescence Resonance Energy Transfer methods, Magnesium Oxide chemistry, Nanostructures chemistry, Oxazines chemistry, Zinc Oxide chemistry, beta-Cyclodextrins chemistry
- Abstract
Core-shell ZnO:MgO nanocrystals have been synthesized by a sequential preparative procedure and capped with carboxymethyl beta-cyclodextrin (CMCD) cavities, thereby rendering the surface of the nanocrystals hydrophilic and the particles water-soluble. The water-soluble CMCD-capped ZnO:MgO nanocrystals emit strongly in the visible region (450-680 nm) on excitation by UV radiation and are stable over extended periods and over a range of pH values. The integrity of the cyclodextrin cavities is preserved on capping and retains their capability for complexation of hydrophobic species in aqueous solutions. Here we report the use of the water-soluble cyclodextrin-capped ZnO:MgO nanocrystals as energy donors for fluorescence resonance energy transfer studies. The organic dye Nile Red has been included within the anchored cyclodextrin cavities to form a noncovalent CMCD ZnO:MgO-Nile Red assembly in aqueous solution. Significant Nile Red fluorescence at 640 nm is observed on band gap excitation of the ZnO:MgO in the UV, indicating efficient resonance energy transfer (RET) from the nanocrystals to the included dye. The number of acceptor molecules interacting with a single donor in the CMCD ZnO:MgO-Nile Red assembly may be altered by controlling the filling up of the anchored cavities by Nile Red, leading to a variation in the efficiency of resonance energy transfer. The donor-acceptor distance was estimated from the efficiency measurements. The Nile Red emission following RET shows a pronounced thermochromic shift, suggesting the possible use of the CMCD ZnO:MgO-Nile Red assembly as thermometers in aqueous solutions.
- Published
- 2008
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658. An amino acid map of inter-residue contact energies using metric multi-dimensional scaling.
- Author
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Rakshit S and Ananthasuresh GK
- Subjects
- Amino Acid Sequence, Chemical Phenomena, Chemistry, Physical, Cluster Analysis, Computational Biology methods, Hydrophobic and Hydrophilic Interactions, Peptide Mapping, Amino Acids chemistry
- Abstract
We present an amino map based on their inter-residue contact energies using the Miyazawa-Jernigan matrix. This work is based on the method of metric multi-dimensional scaling (MMDS). The MMDS map shows, among other things, that the MJ contact energies imply the hydrophobic-hydrophilic nature of the amino acid residues. With the help of the map we are able to compare and draw inferences from uncorrelated data sets such as BLOSUM and PAM with MJ methods. We also use a hierarchical clustering method on our MMDS distance matrix to group the amino acids and arrive at an optimum number of groups for simplifying the amino acid set.
- Published
- 2008
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659. Palladium-catalyzed oxidative cyclization of N-aryl enamines: from anilines to indoles.
- Author
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Würtz S, Rakshit S, Neumann JJ, Dröge T, and Glorius F
- Subjects
- Catalysis, Cyclization, Oxidation-Reduction, Amines chemistry, Aniline Compounds chemistry, Indoles chemical synthesis, Palladium chemistry
- Published
- 2008
- Full Text
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660. Hox patterning of the vertebrate rib cage.
- Author
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McIntyre DC, Rakshit S, Yallowitz AR, Loken L, Jeannotte L, Capecchi MR, and Wellik DM
- Subjects
- Animals, Animals, Genetically Modified, Body Patterning genetics, Bone and Bones metabolism, Gene Expression Profiling, Homeodomain Proteins metabolism, Mice, Models, Biological, Ribs metabolism, Tissue Distribution, Bone and Bones embryology, Gene Expression Regulation, Developmental, Homeodomain Proteins genetics, Ribs embryology, Vertebrates genetics
- Abstract
Unlike the rest of the axial skeleton, which develops solely from somitic mesoderm, patterning of the rib cage is complicated by its derivation from two distinct tissues. The thoracic skeleton is derived from both somitic mesoderm, which forms the vertebral bodies and ribs, and from lateral plate mesoderm, which forms the sternum. By generating mouse mutants in Hox5, Hox6 and Hox9 paralogous group genes, along with a dissection of the Hox10 and Hox11 group mutants, several important conclusions regarding the nature of the ;Hox code' in rib cage and axial skeleton development are revealed. First, axial patterning is consistently coded by the unique and redundant functions of Hox paralogous groups throughout the axial skeleton. Loss of paralogous function leads to anterior homeotic transformations of colinear regions throughout the somite-derived axial skeleton. In the thoracic region, Hox genes pattern the lateral plate-derived sternum in a non-colinear manner, independent from the patterning of the somite-derived vertebrae and vertebral ribs. Finally, between adjacent sets of paralogous mutants, the regions of vertebral phenotypes overlap considerably; however, each paralogous group imparts unique morphologies within these regions. In all cases examined, the next-most posterior Hox paralogous group does not prevent the function of the more-anterior Hox group in axial patterning. Thus, the ;Hox code' in somitic mesoderm is the result of the distinct, graded effects of two or more Hox paralogous groups functioning in any anteroposterior location.
- Published
- 2007
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661. Granulocyte-macrophage colony-stimulating factor drives monocytes to CD14low CD83+ DCSIGN- interleukin-10-producing myeloid cells with differential effects on T-cell subsets.
- Author
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Ganguly D, Paul K, Bagchi J, Rakshit S, Mandal L, Bandyopadhyay G, and Bandyopadhyay S
- Subjects
- Antigens, CD analysis, CD4-Positive T-Lymphocytes immunology, CD8-Positive T-Lymphocytes immunology, Cell Adhesion Molecules analysis, Cell Differentiation immunology, Cell Proliferation, Cells, Cultured, Flow Cytometry, Humans, Immune Tolerance immunology, Immunoglobulins analysis, Interleukin-10 biosynthesis, Lectins, C-Type analysis, Lipopolysaccharide Receptors analysis, Lymphocyte Culture Test, Mixed, Membrane Glycoproteins analysis, Phagocytosis immunology, Proto-Oncogene Proteins metabolism, Receptors, Cell Surface analysis, Toll-Like Receptor 2 metabolism, Toll-Like Receptor 4 metabolism, Trans-Activators metabolism, CD83 Antigen, Granulocyte-Macrophage Colony-Stimulating Factor immunology, Monocytes immunology, T-Lymphocyte Subsets immunology
- Abstract
Granulocyte-macrophage colony-stimulating factor (GM-CSF) has long been found to have growth-promoting effects on multipotent haematopoietic lineages, specifically granulocytes and macrophages. GM-CSF combined with interleukin-4 (IL-4) drives monocytes to become myeloid dendritic cells (mDCs) in vitro. We report that culturing human monocytes with GM-CSF alone generates myeloid cells (GM-Mono) that have lower expression of CD14 than monocytes and that fail to express DC-SIGN. GM-Monos, however, express CD83 and the transcription factor PU.1, although at a lower level than the conventional mDCs generated in the presence of GM-CSF and IL-4. On stimulation with tumour necrosis factor-alpha, interferon-gamma and anti-CD40 monoclonal antibody, the GM-Monos predominantly produced IL-10 but were less efficient in IL-12 production. In a primary allogeneic mixed lymphocyte reaction, GM-Monos induced hyporesponsiveness and IL-10-biased cytokine production in CD4(+) T cells. In fresh mixed lymphocyte reaction, GM-Monos inhibited conventional mDC-induced allogeneic CD4(+) T-cell proliferation. GM-Mono-induced inhibition of allogeneic CD4(+) T-cell proliferation was partially attributed to IL-10. Interestingly, GM-Monos neither induced hyporesponsiveness in allogeneic CD8(+) T cells nor inhibited conventional mDC-induced allogeneic CD8(+) T-cell proliferation. Taken together, we characterize monocyte-derived CD14(low) CD83(+) cells generated by GM-CSF that can induce tolerance or stimulation of T cells depending on T-cell subsets.
- Published
- 2007
- Full Text
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662. DCT-based iris recognition.
- Author
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Monro DM, Rakshit S, and Zhang D
- Subjects
- Fourier Analysis, Humans, Reproducibility of Results, Sensitivity and Specificity, Signal Processing, Computer-Assisted, Algorithms, Artificial Intelligence, Biometry methods, Image Interpretation, Computer-Assisted methods, Iris anatomy & histology, Pattern Recognition, Automated methods
- Abstract
This paper presents a novel iris coding method based on differences of discrete cosine transform (DCT) coefficients of overlapped angular patches from normalized iris images. The feature extraction capabilities of the DCT are optimized on the two largest publicly available iris image data sets, 2,156 images of 308 eyes from the CASIA database and 2,955 images of 150 eyes from the Bath database. On this data, we achieve 100 percent Correct Recognition Rate (CRR) and perfect Receiver-Operating Characteristic (ROC) Curves with no registered false accepts or rejects. Individual feature bit and patch position parameters are optimized for matching through a product-of-sum approach to Hamming distance calculation. For verification, a variable threshold is applied to the distance metric and the False Acceptance Rate (FAR) and False Rejection Rate (FRR) are recorded. A new worst-case metric is proposed for predicting practical system performance in the absence of matching failures, and the worst case theoretical Equal Error Rate (EER) is predicted to be as low as 2.59 x 10(-4) on the available data sets.
- Published
- 2007
- Full Text
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663. Large-scale DNA polymorphism study of Oryza sativa and O. rufipogon reveals the origin and divergence of Asian rice.
- Author
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Rakshit S, Rakshit A, Matsumura H, Takahashi Y, Hasegawa Y, Ito A, Ishii T, Miyashita NT, and Terauchi R
- Subjects
- Base Sequence, Cluster Analysis, DNA Primers, Founder Effect, Linkage Disequilibrium, Molecular Sequence Data, Mutation genetics, Sequence Analysis, DNA, Species Specificity, Chromosomes, Plant genetics, Evolution, Molecular, Oryza genetics, Phylogeny, Polymorphism, Genetic
- Abstract
Polymorphism over approximately 26 kb of DNA sequence spanning 22 loci and one region distributed on chromosomes 1, 2, 3 and 4 was studied in 30 accessions of cultivated rice, Oryza sativa, and its wild relatives. Phylogenetic analysis using all the DNA sequences suggested that O. sativa ssp. indica and ssp. japonica were independently domesticated from a wild species O. rufipogon. O. sativa ssp. indica contained substantial genetic diversity (pi = 0.0024), whereas ssp. japonica exhibited extremely low nucleotide diversity (pi = 0.0001) suggesting the origin of the latter from a small number of founders. O. sativa ssp. japonica contained a larger number of derived and fixed non-synonymous substitutions as compared to ssp. indica. Nucleotide diversity and genealogical history substantially varied across the 22 loci. A locus, RLD15 on chromosome 2, showed a distinct genealogy with ssp. japonica sequences distantly separated from those of O. rufipogon and O. sativa ssp. indica. Linkage disequilibrium (LD) was analyzed in two different regions. LD in O. rufipogon decays within 5 kb, whereas it extends to approximately 50 kb in O. sativa ssp. indica.
- Published
- 2007
- Full Text
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664. Leishmania donovani infection of human myeloid dendritic cells leads to a Th1 response in CD4+ T cells from healthy donors and patients with kala-azar.
- Author
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Ghosh M, Mandal L, Maitra S, Rakshit S, Paul K, Bagchi J, Ganguly D, Pal C, and Bandyopadhyay S
- Subjects
- Animals, Cell Differentiation immunology, Cricetinae, GATA3 Transcription Factor biosynthesis, GATA3 Transcription Factor immunology, Humans, Leishmania donovani growth & development, Leishmania donovani pathogenicity, Life Cycle Stages, Lymphocyte Activation, Mesocricetus, Myeloid Cells immunology, Myeloid Cells parasitology, T-Box Domain Proteins biosynthesis, T-Box Domain Proteins immunology, T-bet Transcription Factor, CD4-Positive T-Lymphocytes immunology, Dendritic Cells immunology, Dendritic Cells parasitology, Leishmania donovani immunology, Leishmaniasis, Visceral immunology, Th1 Cells immunology
- Abstract
The role played by dendritic cells (DCs) in Leishmania donovani infection is poorly understood. Here, we report that L. donovani amastigotes efficiently infect human peripheral-blood monocyte-derived DCs. Opsonization with normal human serum enhanced the infectivity of amastigotes and promastigotes only marginally. Surface attachment versus internalization was distinguished by incubation of DCs with live, fluorescein isothiocyanate-labeled parasites, followed by quenching with crystal violet. Infection with amastigotes was accompanied by DC maturation, as was evident from the up-regulation of maturation-associated cell-surface markers, the nuclear translocation of RelB, and the release of cytokines. Amastigote-primed DCs produced inflammatory cytokines in response to subsequent treatment with interferon- gamma or anti-CD40 monoclonal antibody. When cocultured, amastigote-infected DCs induced T helper cell type 1 (Th1) responses both in naive allogeneic CD4(+) T cells and in autologous CD4(+) T cells from patients with kala-azar and up-regulated the expression of T-bet. Our data reveal that infection with L. donovani amastigotes induces a Th1 cytokine milieu in both DCs and T cells.
- Published
- 2006
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665. Antinutritional factors and in vitro protein digestibility of improved haricot bean (Phaseolus vulgaris L.) varieties grown in Ethiopia.
- Author
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Admassu Shimelis E and Kumar Rakshit S
- Subjects
- Ethiopia, Food Analysis methods, Nutritional Physiological Phenomena physiology, Oligosaccharides analysis, Phytic Acid analysis, Plant Proteins administration & dosage, Raffinose analysis, Tannins analysis, Trypsin Inhibitors metabolism, Zinc analysis, Dietary Proteins administration & dosage, Digestion physiology, Phaseolus chemistry
- Abstract
The antinutrient (raffinose oligosaccharides, tannins, phytic acid and trypsin inhibitors) composition and in vitro protein digestibility of eight improved varieties of Phaseolus vulgaris grown in Ethiopia were determined. Stachyose was the predominant alpha-galactosides in all haricot bean samples. Raffinose was also present in significant quantities but verbascose, glucose and fructose were not detected at all in the samples. The concentrations observed for the protein digestibility and antinutritional factors, varied significantly (P<0.05) between varieties investigated in this study. Mean values for protein digestibility ranged from 80.66% (in Roba variety) to 65.64% (in Beshbesh variety). Mean values for raffinose, stachyose, sucrose, trypsin inhibitors, tannins and phytic acid were 3.14 mg/g, 14.86 mg/g, 24.22 mg/g, 20.68 TUIx10(3)/g, 17.44 mg, catechin equivalents/g and 20.54 mg/g respectively. Statistical analyses of data revealed that antinutritional factors and protein digestibility were influenced by variety (genotype). Relationships between antinutritional factors and protein digestibility were also observed. The possibility of selecting varieties to be used for large-scale cultivation in Ethiopia on the basis of these data is discussed. Among the improved varieties studied, Roba, Redwolaita, Mexican and Awash were found to be the best food and export type of haricot beans in the Ethiopian context, because of their higher protein digestibility, lower antinutrtional factors and other beneficial nutritional parameters. Roba variety can be used by local food processors for the production of value-added bean-based products especially to combat the problem of protein energy malnutrition and related diseases which are very common in developing countries.
- Published
- 2005
- Full Text
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666. Reduction of copper(II) by iron(II).
- Author
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Matocha CJ, Karathanasis AD, Rakshit S, and Wagner KM
- Subjects
- Hydrogen-Ion Concentration, Oxidation-Reduction, Spectroscopy, Fourier Transform Infrared, Time Factors, X-Ray Diffraction, Chlorides chemistry, Copper chemistry, Iron chemistry, Soil
- Abstract
Laboratory and field investigations have clearly demonstrated the important role of reduced iron (Fe(II)) in reductive transformations of first-row transition metal species. However, interactions of Fe(II) and copper (Cu) are not clearly understood. This study examined the reduction of Cu(II) by Fe(II) in stirred-batch experiments at pH 5.2 and 5.5 as influenced by chloride (Cl-) concentration (0.002-0.1 M), initial metal concentration (0.1-9.1 mM), and reaction time (1-60 min) under anoxic conditions. Reduction of Cu(II) to Cu(I) by dissolved Fe(II) was rapid under all experimental conditions and the stability of the products explains the driving force for the redox reaction. Under conditions of low [Cl-] and high initial metal concentration, >40% of total Cu and Fe were removed from solution after 1 min, which accompanied formation of a brownish-red precipitate. X-ray diffraction (XRD) patterns of the precipitates revealed the presence of cuprite (Cu2O), a Cu(I) mineral, based on d-spacings located at 0.248, 0.215, 0.151, and 0.129 nm. Fourier transform infrared (FTIR) spectroscopy corroborated XRD data for the presence of Cu2O, with features located at 518, 625, and 698 cm(-1). Increasing [Cl-] stabilized the dissolved Cu(I) product against Cu2O precipitation and resulted in more Fe precipitated from solution (relative to Cu) that appears to be present as poorly crystalline lepidocrocite (gamma-FeOOH). This process may be important in anoxic soil environments, where dissolved Fe(II) levels can accumulate.
- Published
- 2005
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667. Nitrate reduction in the presence of wüstite .
- Author
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Rakshit S, Matocha CJ, and Haszler GR
- Subjects
- Corrosion, Ferrosoferric Oxide, Hydrogen-Ion Concentration, Iron, Kinetics, Oxidation-Reduction, Oxides, Solubility, X-Ray Diffraction, Ferric Compounds chemistry, Nitrates chemistry
- Abstract
Recent strategies to reduce elevated nitrate concentrations employ metallic Fe0 as a reductant. Secondary products of Fe0 corrosion include magnetite (Fe3O4), green rust [Fe6(OH)12SO4], and wüstite [FeO(s)]. To our knowledge, no studies have been reported on the reactivity of NO3- with FeO(s). This project was initiated to evaluate the reactivity of FeO(s) with NO3- under abiotic conditions. Stirred batch reactions were performed in an anaerobic chamber over a range of pH values (5.45, 6.45, and 7.45), initial FeO(s) concentrations (1, 5, and 10 g L(-1)), initial NO3- concentrations (1, 10, and 15 mM), and temperatures (3, 21, 31, and 41 degrees C) for kinetic and thermodynamic determinations. Suspensions were periodically removed and filtered to measure dissolved nitrogen and iron species. Solid phases were characterized using X-ray diffraction (XRD) and scanning electron microscopy (SEM). Nitrate reduction by FeO was rapid and characterized by nearly stoichiometric conversion of NO3- to NH4+. Transient NO2- formation also occurred. The XRD and SEM results indicated the formation of Fe3O4 as a reaction product of the heterogeneous redox reaction. Kinetics of NO3- reduction suggested a rate equation of the type: -d[NO3-]/dt = k[FeO]0.57[H]0.22[NO3-]1.12 where k = 3.46 x 10(-3) +/- 0.38 x 10(-3) M(-1) s(-1), at 25 degrees C. Arrhenius and Eyring plots indicate that the reaction is surface chemical-controlled and proceeds by an associative mechanism involving a step where both NO3- and FeO(s) bind together in an intermediate complex.
- Published
- 2005
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668. Chlorogenic acid inhibits Bcr-Abl tyrosine kinase and triggers p38 mitogen-activated protein kinase-dependent apoptosis in chronic myelogenous leukemic cells.
- Author
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Bandyopadhyay G, Biswas T, Roy KC, Mandal S, Mandal C, Pal BC, Bhattacharya S, Rakshit S, Bhattacharya DK, Chaudhuri U, Konar A, and Bandyopadhyay S
- Subjects
- Cell Line, Tumor, Cell Survival drug effects, Enzyme Activation, Enzyme Inhibitors pharmacology, Fusion Proteins, bcr-abl, Humans, K562 Cells, Leukemia, Myelogenous, Chronic, BCR-ABL Positive enzymology, MAP Kinase Signaling System drug effects, Mitogen-Activated Protein Kinase 1 antagonists & inhibitors, Mitogen-Activated Protein Kinase 1 metabolism, Mitogen-Activated Protein Kinase 3 antagonists & inhibitors, Mitogen-Activated Protein Kinase 3 metabolism, Phosphorylation drug effects, src-Family Kinases metabolism, Apoptosis drug effects, Chlorogenic Acid pharmacology, Leukemia, Myelogenous, Chronic, BCR-ABL Positive metabolism, Leukemia, Myelogenous, Chronic, BCR-ABL Positive pathology, Protein-Tyrosine Kinases antagonists & inhibitors, Protein-Tyrosine Kinases metabolism, p38 Mitogen-Activated Protein Kinases metabolism
- Abstract
We report that chlorogenic acid (Chl) induces apoptosis of several Bcr-Abl-positive chronic myelogenous leukemia (CML) cell lines and primary cells from CML patients in vitro and destroys Bcr-Abl-positive K562 cells in vivo. In contrast, this compound has no effect on the growth and viability of Bcr-Abl-negative lymphocytic and myeloid cell lines and primary CML cells. Sodium chlorogenate (NaChl) exhibits 2-fold higher efficiency in killing K562 cells compared with Chl. NaChl also induces growth inhibition of squamous cell carcinoma (HSC-2) and salivary gland tumor cells (HSG), although at 50-fold higher concentration. NaChl inhibits autophosphorylation of p210(Bcr-Abl) fusion protein rapidly. We demonstrate that p38 phosphorylation is increased in Bcr-Abl-positive cells after treatment with NaChl and closely paralleled the inhibition of Bcr-Abl phosphorylation. NaChl did not increase phosphorylation of p38 in Bcr-Abl-negative cells including HSC-2 and HSG that are responsive to this compound, indicating that p38 activation by NaChl is dependent on Bcr-Abl kinase inhibition. Inhibition of p38 activity by SB203580 significantly reduced NaChl-induced apoptosis of K562 cells, whereas activation of p38 by anisomycin augmented the apoptosis. These findings indicate that inhibition of Bcr-Abl kinase leading to activation of p38 mitogen-activated protein (MAP) kinase may play an important role in the anti-CML activity of Chl.
- Published
- 2004
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669. Camptothecin induced mitochondrial dysfunction leading to programmed cell death in unicellular hemoflagellate Leishmania donovani.
- Author
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Sen N, Das BB, Ganguly A, Mukherjee T, Tripathi G, Bandyopadhyay S, Rakshit S, Sen T, and Majumder HK
- Subjects
- Animals, Apoptosis drug effects, Caspase 3, Cytochrome c Group metabolism, DNA Fragmentation, DNA Topoisomerases, Type I metabolism, Enzyme Inhibitors pharmacology, Humans, Leishmania donovani ultrastructure, Mitochondria ultrastructure, Reactive Oxygen Species metabolism, Topoisomerase I Inhibitors, Tumor Cells, Cultured, Apoptosis physiology, Camptothecin pharmacology, Caspases metabolism, Leishmania donovani metabolism, Mitochondria metabolism
- Abstract
The parasites of the order kinetoplastidae including Leishmania spp. emerge from most ancient phylogenic branches of unicellular eukaryotic lineages. In their life cycle, topoisomerase I plays a significant role in carrying out vital cellular processes. Camptothecin (CPT), an inhibitor of DNA topoisomerase I, induces programmed cell death (PCD) both in the amastigotes and promastigotes form of L. donovani parasites. CPT-induced cellular dysfunction in L. donovani promastigotes is characterized by several cytoplasmic and nuclear features of apoptosis. CPT inhibits cellular respiration that results in mitochondrial hyperpolarization taking place by oligomycin-sensitive F0-F1 ATPase-like protein in leishmanial cells. During the early phase of activation, there is an increase in reactive oxygen species (ROS) inside cells, which causes subsequent elevation in the level of lipid peroxidation and decrease in reducing equivalents like GSH. Endogenous ROS formation and lipid peroxidation cause eventual loss of mitochondrial membrane potential. Furthermore, cytochrome c is released into the cytosol in a manner independent of involvement of CED3/CPP32 group of proteases and unlike mammalian cells it is insensitive to cyclosporin A. These events are followed by activation of both CED3/CPP32 and ICE group of proteases in PCD of Leishmania. Taken together, our study indicates that different biochemical events leading to apoptosis in leishmanial cells provide information that could be exploited to develop newer potential therapeutic targets.
- Published
- 2004
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670. IL-4 alone without the involvement of GM-CSF transforms human peripheral blood monocytes to a CD1a(dim), CD83(+) myeloid dendritic cell subset.
- Author
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Roy KC, Bandyopadhyay G, Rakshit S, Ray M, and Bandyopadhyay S
- Subjects
- Animals, Antigens, CD, Base Sequence, Cell Differentiation physiology, Cell Line, Transformed, DNA Primers, Flow Cytometry, Humans, Lymphocyte Culture Test, Mixed, Mice, RNA, Messenger genetics, Reverse Transcriptase Polymerase Chain Reaction, CD83 Antigen, Antigens, CD1 immunology, Dendritic Cells immunology, Granulocyte-Macrophage Colony-Stimulating Factor physiology, Immunoglobulins immunology, Interleukin-4 physiology, Membrane Glycoproteins immunology, Monocytes immunology
- Abstract
Myeloid dendritic cells (DCs) are conventionally generated by culturing human peripheral blood monocytes in the presence of GM-CSF and IL-4. Here we report that IL-4 alone, in the absence of detectable endogenous GM-CSF, transforms human peripheral blood monocytes to a CD1a(dim) DC subset that could be matured to CD83(+) DCs. Absence of endogenous GM-CSF in IL-4-DC was demonstrated by RT-PCR and flow cytometry. With the exception of CD1a expression, surface marker, morphology and phagocytic activity of these DCs (IL-4-DC) were similar to myeloid DCs (GM-IL-4-DC) conventionally generated in the presence of GM-CSF and IL-4. Conventional GM-IL-4-DC produced less IL-12 compared with IL-4-DC after stimulation with anti-CD40 monoclonal antibody, or LPS plus IFN-gamma, although the difference was more prominent when LPS plus IFN-gamma was used as the stimulus. The GM-IL-4-DC also induced less frequent IFN-gamma(+) T cells in a mixed leukocyte reaction (MLR) than that of IL-4-DC. Yields of IL-4-DCs were marginally lower than that of GM-IL-4-DCs. Our data indicate that peripheral blood monocytes can be transformed to CD1a-deficient myeloid DCs solely by IL-4, and these IL-4-DCs are likely to induce a stronger Th1 response than conventional GM-IL-4-DCs.
- Published
- 2004
- Full Text
- View/download PDF
671. Feature selection in MLPs and SVMs based on maximum output information.
- Author
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Sindhwani V, Rakshit S, Deodhare D, Erdogmus D, Principe JC, and Niyogi P
- Subjects
- Breast Neoplasms classification, Breast Neoplasms diagnosis, Cluster Analysis, Computer Simulation, Computing Methodologies, Humans, Information Storage and Retrieval methods, Likelihood Functions, Probability Learning, Algorithms, Artificial Intelligence, Decision Support Techniques, Information Theory, Models, Statistical, Neural Networks, Computer, Pattern Recognition, Automated
- Abstract
This paper presents feature selection algorithms for multilayer perceptrons (MLPs) and multiclass support vector machines (SVMs), using mutual information between class labels and classifier outputs, as an objective function. This objective function involves inexpensive computation of information measures only on discrete variables; provides immunity to prior class probabilities; and brackets the probability of error of the classifier. The maximum output information (MOI) algorithms employ this function for feature subset selection by greedy elimination and directed search. The output of the MOI algorithms is a feature subset of user-defined size and an associated trained classifier (MLP/SVM). These algorithms compare favorably with a number of other methods in terms of performance on various artificial and real-world data sets.
- Published
- 2004
- Full Text
- View/download PDF
672. Developments in industrially important thermostable enzymes: a review.
- Author
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Haki GD and Rakshit SK
- Subjects
- Bacteria enzymology, Cloning, Molecular, Enzymes genetics, Enzymes isolation & purification, Hot Temperature, Enzyme Stability, Enzymes metabolism, Industry
- Abstract
Cellular components of thermophilic organisms (enzymes, proteins and nucleic acids) are also thermostable. Apart from high temperature they are also known to withstand denaturants of extremely acidic and alkaline conditions. Thermostable enzymes are highly specific and thus have considerable potential for many industrial applications. The use of such enzymes in maximising reactions accomplished in the food and paper industry, detergents, drugs, toxic wastes removal and drilling for oil is being studied extensively. The enzymes can be produced from the thermophiles through either optimised fermentation of the microorganisms or cloning of fast-growing mesophiles by recombinant DNA technology. In this review, the source microorganisms and properties of thermostable starch hydrolysing amylases, xylanases, cellulases, chitinases, proteases, lipases and DNA polymerases are discussed. The industrial needs for such specific thermostable enzyme and improvements required to maximize their application in the future are also suggested.
- Published
- 2003
- Full Text
- View/download PDF
673. Biosynthesis of nutraceutical iso-oligosaccharides by multiple forms of transferase produced by Aspergillus foetidus.
- Author
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Wang XD and Rakshit SK
- Subjects
- Ammonium Sulfate, Chromatography, High Pressure Liquid, Hot Temperature, Hydrogen-Ion Concentration, Isoenzymes metabolism, Kinetics, Oligosaccharides isolation & purification, Proteins chemistry, Substrate Specificity, Temperature, Aspergillus enzymology, Oligosaccharides biosynthesis, Transferases metabolism
- Abstract
Isomalto-oligosaccharide and isofructo-oligosaccharide production was attempted using enzymes produced by Aspergillus foetidus. Four fractions having transferase enzyme activity were obtained from the fermentation broth of Aspergillus foetidus by ammonium sulfate precipitation and DEAE-cellulose chromatography. The optimum temperature was 60 degrees C and pH stability in the range 4 to 6 for various fractions. The pH optima, heat sensitivity and kinetic parameters for the four fractions were however not the same. All four enzyme fractions could not utilize lactose and cellobiose to synthesize isooligosaccharide and showed different transferase activity for maltose and sucrose for synthesis of isooligosaccharides. The HPLC isooligosaccharide product analysis of these transferase enzymes reveal that the four forms of enzymes are distinct and produce oligosaccharides like panose, kestose and nystose or act as hydrolytic enzymes, depending on reaction conditions.
- Published
- 2000
- Full Text
- View/download PDF
674. Computation of optical flow using basis functions.
- Author
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Rakshit S and Anderson CH
- Abstract
The issues governing the computation of optical flow in image sequences are addressed. The trade-off between accuracy versus computation cost is shown to be dependent on the redundancy of the image representation. This dependency is highlighted by reformulating Horn's (1986) algorithm, making explicit use of the approximations to the continuous basis functions underlying the discrete representation. The computation cost of estimating optical flow, for a fixed error tolerance, is shown to be a minimum for images resampled at twice the Nyquist rate. The issues of derivative calculation and multiresolution representation are also briefly discussed in terms of basis functions and information encoding. A multiresolution basis function formulation of Horn's algorithm is shown to lead to large improvements in dealing with high frequencies and large displacements.
- Published
- 1997
- Full Text
- View/download PDF
675. Neural responses to polar, hyperbolic, and Cartesian gratings in area V4 of the macaque monkey.
- Author
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Gallant JL, Connor CE, Rakshit S, Lewis JW, and Van Essen DC
- Subjects
- Animals, Cluster Analysis, Macaca mulatta, Macaca nemestrina, Normal Distribution, Photic Stimulation, Random Allocation, Vision Tests, Evoked Potentials, Visual physiology, Neurons physiology, Visual Pathways physiology
- Abstract
1. We studied the responses of 103 neurons in visual area V4 of anesthetized macaque monkeys to two novel classes of visual stimuli, polar and hyperbolic sinusoidal gratings. We suspected on both theoretical and experimental grounds that these stimuli would be useful for characterizing cells involved in intermediate stages of form analysis. Responses were compared with those obtained with conventional Cartesian sinusoidal gratings. Five independent, quantitative analyses of neural responses were carried out on the entire population of cells. 2. For each cell, responses to the most effective Cartesian, polar, and hyperbolic grating were compared directly. In 18 of 103 cells, the peak response evoked by one stimulus class was significantly different from the peak response evoked by the remaining two classes. Of the remaining 85 cells, 74 had response peaks for the three stimulus classes that were all within a factor of 2 of one another. 3. An information-theoretic analysis of the trial-by-trial responses to each stimulus showed that all but two cells transmitted significant information about the stimulus set as a whole. Comparison of the information transmitted about each stimulus class showed that 23 of 103 cells transmitted a significantly different amount of information about one class than about the remaining two classes. Of the remaining 80 cells, 55 had information transmission rates for the three stimulus classes that were all within a factor of 2 of one another. 4. To identify cells that had orderly tuning profiles in the various stimulus spaces, responses to each stimulus class were fit with a simple Gaussian model. Tuning curves were successfully fit to the data from at least one stimulus class in 98 of 103 cells, and such fits were obtained for at least two classes in 87 cells. Individual neurons showed a wide range of tuning profiles, with response peaks scattered throughout the various stimulus spaces; there were no major differences in the distributions of the widths or positions of tuning curves obtained for the different stimulus classes. 5. Neurons were classified according to their response profiles across the stimulus set with two objective methods, hierarchical cluster analysis and multidimensional scaling. These two analyses produced qualitatively similar results. The most distinct group of cells was highly selective for hyperbolic gratings. The majority of cells fell into one of two groups that were selective for polar gratings: one selective for radial gratings and one selective for concentric or spiral gratings. There was no group whose primary selectivity was for Cartesian gratings. 6. To determine whether cells belonging to identified classes were anatomically clustered, we compared the distribution of classified cells across electrode penetrations with the distribution that would be expected if the cells were distributed randomly. Cells with similar response profiles were often anatomically clustered. 7. A position test was used to determine whether response profiles were sensitive to precise stimulus placement. A subset of Cartesian and non-Cartesian gratings was presented at several positions in and near the receptive field. The test was run on 13 cells from the present study and 28 cells from an earlier study. All cells showed a significant degree of invariance in their selectivity across changes in stimulus position of up to 0.5 classical receptive field diameters. 8. A length and width test was used to determine whether cells preferring non-Cartesian gratings were selective for Cartesian grating length or width. Responses to Cartesian gratings shorter or narrower than the classical receptive field were compared with those obtained with full-field Cartesian and non-Cartesian gratings in 29 cells. Of the four cells that had shown significant preferences for non-Cartesian gratings in the main test, none showed tuning for Cartesian grating length or width that would account for their non-Cartesian res
- Published
- 1996
- Full Text
- View/download PDF
676. The mutated locus and the changes in the background genotype of jute (C. olitorius L.).
- Author
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Sinhamahapatra SP and Rakshit SC
- Abstract
Morphologically similar leaf characters of two X-ray induced and independently isolated jute mutants from a common mother cultivar, JRO-632, were controlled by the same locus. However, they differed significantly in such quantitative characters as plant height, middle diameter, days to flower, node number and fibre yield/plant. Combining ability analysis from a 9 X 9 diallel set of crossing including these two mutants revealed that the mutants significantly differed in general combining ability (gca) effects for most of the traits in either direction or magnitude. Specific combining ability (sca) effects of the inter-mutant cross, as well as crosses with the common mother cultivar, JRO-632, also differed for most of the traits studied. It was suggested that X-irradiation induced random mutations effecting changes in the common background genotype, independent of the mutated locus.
- Published
- 1981
- Full Text
- View/download PDF
677. Number of women requiring maternity services.
- Author
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Rakshit S and Talwar PP
- Subjects
- Female, Humans, India, Pregnancy, Maternal Welfare
- Published
- 1966
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