51. DNA binding of a short lexitropsin
- Author
-
Graham G. Skellern, Simon P. Mackay, Colin J. Suckling, Nahoum G. Anthony, John Parkinson, Abedawn I. Khalaf, Blair F. Johnston, Roger D. Waigh, Iain S McGroarty, and Keith R. Fox
- Subjects
Binding Sites ,Stereochemistry ,Base pair ,Lexitropsin ,Organic Chemistry ,Clinical Biochemistry ,Pharmaceutical Science ,Cooperative binding ,Sequence (biology) ,Netropsin ,DNA ,Biochemistry ,Footprinting ,DNA-Binding Proteins ,chemistry.chemical_compound ,chemistry ,Drug Discovery ,Molecular Medicine ,Molecule ,Thiazole ,Molecular Biology ,Protein Binding - Abstract
Footprinting, capillary electrophoresis, molecular modelling and NMR studies have been used to examine the binding of a short polyamide to DNA. This molecule, which contains an isopropyl-substituted thiazole in place of one of the N-methylpyrroles, is selective for the sequence 5′-ACTAGT-3′ to which it binds with high affinity. Two molecules bind side-by-side in the minor groove, but their binding is staggered so that the molecule reads six base pairs, unlike the related natural products, which tend to bind to four-base-pair sequences. The result suggests that high affinity and selectivity may be gained without resort to very large molecules, which may be difficult to deliver to the site of action.
- Published
- 2003