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683 results on '"Celniker, Susan E"'

52. Genetic and microbial determinants of azoxymethane-induced colorectal tumor susceptibility in Collaborative Cross mice and their implication in human cancer

Author

Li, Dan, primary, Zhong, Chenhan, additional, Yang, Mengyuan, additional, He, Li, additional, Chang, Hang, additional, Zhu, Ning, additional, Celniker, Susan E, additional, Threadgill, David W, additional, Snijders, Antoine M, additional, Mao, Jian-Hua, additional, and Yuan, Ying, additional

Published
2023
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54. Transcription Factors Bind Thousands of Active and Inactive Regions in the Drosophila Blastoderm

Author

Li, Xiao-Yong, MacArthur, Stewart, Bourgon, Richard, Nix, David, Pollard, Daniel A., Iyer, Venky N., Hechmer, Aaron, Simirenko, Lisa, Stapleton, Mark, Luengo Hendriks, Cris L., Chu, Hou Cheng, Ogawa, Nobuo, Inwood, William, Sementchenko, Victor, Beaton, Amy, Weiszmann, Richard, Celniker, Susan E., Knowles, David W., Gingeras, Tom, Speed, Terence P., Eisen, Michael B., and Biggin, Mark D.

Subjects
Applied life sciences
Published
2008

55. Sequence finishing and mapping of Drosophila melanogaster heterochromatin

Author

Hoskins, Roger A., Carlson, Joseph W., Kennedy, Cameron, Acevedo, David, Evans-Holm, Martha, Frise, Erwin, Wan, Kenneth H., Park, Soo, Mendez-Lago, Maria, Rossi, Fabrizio, Villasante, Alfredo, Dimitri, Patrizio, Karpen, Gary H., and Celniker, Susan E.

Subjects
Basic biological sciences, heterochromatin Drosophila repeated DNA sequence assembly BAC FISH
Abstract

Genome sequences for most metazoans are incomplete due to the presence of repeated DNA in the pericentromeric heterochromatin. The heterochromatic regions of D. melanogaster contain 20 Mb of sequence amenable to mapping, sequence assembly and finishing. Here we describe the generation of 15 Mb of finished or improved heterochromatic sequence using available clone resources and assembly and mapping methods. We also constructed a BAC-based physical map that spans approximately 13 Mb of the pericentromeric heterochromatin, and a cytogenetic map that positions approximately 11 Mb of BAC contigs and sequence scaffolds in specific chromosomal locations. The integrated sequence assembly and maps greatly improve our understanding of the structure and composition of this poorly understood fraction of a metazoan genome and provide a framework for functional analyses.

Published
2008

58. Drosophila by the dozen

Author

Celniker, Susan E. and Hoskins, Roger A.

Subjects
Basic biological sciences, Drosophila genome
Abstract

This year's conference on Drosophila research illustrated well the current focus of Drosophila genomics on the comprehensive identification of functional elements in the genome sequence, including mRNA transcripts arising from multiple alternative start sites and splice sites, a multiplicity of noncoding transcripts and small RNAs, identification of binding sites for transcription factors, sequence conservation in related species and sequence variation within species. Resources and technologies for genetics and functional genomics are steadily being improved, including the building of collections of transposon insertion mutants and hairpin constructs for RNA interference (RNAi). The conference also highlighted progress in the use of genomic information by many laboratories to study diverse aspects of biology and models of human disease. Here we will review a few highlights of especial interest to readers of Genome Biology.

Published
2007

60. High-Throughput Plasmid cDNA Library Screening

Author

Wan, Kenneth H., Yu, Charles, George, Reed A., Carlson, Joseph W., Hoskins, Roger A., Svirskas, Robert, Stapleton, Mark, and Celniker, Susan E.

Subjects
Basic biological sciences, PCR cDNA library screening
Abstract

Libraries of cDNA clones are valuable resources for analysing the expression, structure, and regulation of genes, as well as for studying protein functions and interactions. Full-length cDNA clones provide information about intron and exon structures, splice junctions and 5'- and 3'-untranslated regions (UTRs). Open reading frames (ORFs) derived from cDNA clones can be used to generate constructs allowing expression of native proteins and N- or C-terminally tagged proteins. Thus, obtaining full-length cDNA clones and sequences for most or all genes in an organism is critical for understanding genome functions. Expressed sequence tag (EST) sequencing samples cDNA libraries at random, which is most useful at the beginning of large-scale screening projects. However, as projects progress towards completion, the probability of identifying unique cDNAs via EST sequencing diminishes, resulting in poor recovery of rare transcripts. We describe an adapted, high-throughput protocol intended for recovery of specific, full-length clones from plasmid cDNA libraries in five days.

Published
2006

61. A BAC-Based Physical Map of the Major Autosomes of Drosophila melanogaster

Author

Hoskins, Roger A., Nelson, Catherine R., Berman, Benjamin P., Laverty, Todd R., George, Reed A., Ciesiolka, Lisa, Naeemuddin, Mohammed, Arenson, Andrew D., Durbin, James, David, Robert G., Tabor, Paul E., Bailey, Michael R., DeShazo, Denise R., Catanese, Joseph, Mammoser, Aaron, Osoegawa, Kazutoyo, de Jong, Pieter J., Celniker, Susan E., Gibbs, Richard A., Rubin, Gerald M., and Scherer, Steven E.

Published
2000

62. The Genome Sequence of Drosophila melanogaster

Author

Adams, Mark D., Celniker, Susan E., Holt, Robert A., Evans, Cheryl A., Gocayne, Jeannine D., Amanatides, Peter G., Scherer, Steven E., Li, Peter W., Hoskins, Roger A., Galle, Richard F., George, Reed A., Lewis, Suzanna E., Richards, Stephen, Ashburner, Michael, Henderson, Scott N., Sutton, Granger G., Wortman, Jennifer R., Yandell, Mark D., Zhang, Qing, Chen, Lin X., Brandon, Rhonda C., Rogers, Yu-Hui C., Blazej, Robert G., Champe, Mark, Pfeiffer, Barret D., Wan, Kenneth H., Doyle, Clare, Baxter, Evan G., Helt, Gregg, Nelson, Catherine R., Abril, Josep F., Agbayani, Anna, An, Hui-Jin, Andrews-Pfannkoch, Cynthia, Baldwin, Danita, Ballew, Richard M., Basu, Anand, Baxendale, James, Bayraktaroglu, Leyla, Beasley, Ellen M., Beeson, Karen Y., Benos, P. V., Berman, Benjamin P., Bhandari, Deepali, Bolshakov, Slava, Borkova, Dana, Botchan, Michael R., Bouck, John, Brokstein, Peter, Brottier, Phillipe, Burtis, Kenneth C., Busam, Dana A., Butler, Heather, Cadieu, Edouard, Chandra, Ishwar, Cherry, J. Michael, Cawley, Simon, Dahlke, Carl, Davenport, Lionel B., Davies, Peter, de Pablos, Beatriz, Delcher, Arthur, Deng, Zuoming, Mays, Anne Deslattes, Dew, Ian, Dietz, Suzanne M., Dodson, Kristina, Doup, Lisa E., Downes, Michael, Dugan-Rocha, Shannon, Dunkov, Boris C., Dunn, Patrick, Durbin, Kenneth J., Evangelista, Carlos C., Ferraz, Concepcion, Ferriera, Steven, Fleischmann, Wolfgang, Fosler, Carl, Gabrielian, Andrei E., Garg, Neha S., Gelbart, William M., Glasser, Ken, Glodek, Anna, Gong, Fangcheng, Gorrell, J. Harley, Gu, Zhiping, Guan, Ping, Harris, Michael, Harris, Nomi L., Harvey, Damon, Heiman, Thomas J., Hernandez, Judith R., Houck, Jarrett, Hostin, Damon, Houston, Kathryn A., Howland, Timothy J., Wei, Ming-Hui, Ibegwam, Chinyere, Jalali, Mena, Kalush, Francis, Karpen, Gary H., Ke, Zhaoxi, Kennison, James A., Ketchum, Karen A., Kimmel, Bruce E., Kodira, Chinnappa D., Kraft, Cheryl, Kravitz, Saul, Kulp, David, Lai, Zhongwu, Lasko, Paul, Lei, Yiding, Levitsky, Alexander A., Li, Jiayin, Li, Zhenya, Liang, Yong, Lin, Xiaoying, Liu, Xiangjun, Mattei, Bettina, McIntosh, Tina C., McLeod, Michael P., McPherson, Duncan, Merkulov, Gennady, Milshina, Natalia V., Mobarry, Clark, Morris, Joe, Moshrefi, Ali, Mount, Stephen M., Moy, Mee, Murphy, Brian, Murphy, Lee, Muzny, Donna M., Nelson, David L., Nelson, David R., Nelson, Keith A., Nixon, Katherine, Nusskern, Deborah R., Pacleb, Joanne M., Palazzolo, Michael, Pittman, Gjange S., Pan, Sue, Pollard, John, Puri, Vinita, Reese, Martin G., Reinert, Knut, Remington, Karin, Scheeler, Frederick, Shen, Hua, Shue, Bixiang Christopher, Sidén-Kiamos, Inga, Simpson, Michael, Skupski, Marian P., Smith, Tom, Spier, Eugene, Spradling, Allan C., Stapleton, Mark, Strong, Renee, Sun, Eric, Svirskas, Robert, Tector, Cyndee, Turner, Russell, Venter, Eli, Wang, Aihui H., Wang, Xin, Wang, Zhen-Yuan, Wassarman, David A., Weinstock, George M., Weissenbach, Jean, Williams, Sherita M., Woodage, Trevor, Worley, Kim C., Wu, David, Yang, Song, Yao, Q. Alison, Ye, Jane, Yeh, Ru-Fang, Zaveri, Jayshree S., Zhan, Ming, Zhang, Guangren, Zhao, Qi, Zheng, Liansheng, Zheng, Xiangqun H., Zhong, Fei N., Zhong, Wenyan, Zhou, Xiaojun, Zhu, Shiaoping, Zhu, Xiaohong, Smith, Hamilton O., Gibbs, Richard A., Myers, Eugene W., Rubin, Gerald M., and Venter, J. Craig

Published
2000

63. Comparative Genomics of the Eukaryotes

Author

Rubin, Gerald M., Yandell, Mark D., Wortman, Jennifer R., Nelson, Catherine R., Hariharan, Iswar K., Fortini, Mark E., Li, Peter W., Apweiler, Rolf, Fleischmann, Wolfgang, Cherry, J. Michael, Henikoff, Steven, Skupski, Marian P., Misra, Sima, Ashburner, Michael, Birney, Ewan, Boguski, Mark S., Brody, Thomas, Brokstein, Peter, Celniker, Susan E., Chervitz, Stephen A., Coates, David, Cravchik, Anibal, Gabrielian, Andrei, Galle, Richard F., Gelbart, William M., George, Reed A., Gong, Fangcheng, Guan, Ping, Harris, Nomi L., Hay, Bruce A., Hoskins, Roger A., Li, Jiayin, Li, Zhenya, Hynes, Richard O., Jones, S. J. M., Kuehl, Peter M., Lemaitre, Bruno, Littleton, J. Troy, Morrison, Deborah K., Mungall, Chris, O'Farrell, Patrick H., Pickeral, Oxana K., Shue, Chris, Vosshall, Leslie B., Zhang, Jiong, Zhao, Qi, Zheng, Xiangqun H., Zhong, Fei, Zhong, Wenyan, Gibbs, Richard, Venter, J. Craig, Adams, Mark D., and Lewis, Suzanna

Published
2000

64. Identification and analysis of U5 snRNA variants in Drosophila

Author

CHEN, LI, LULLO, DENNIS J, MA, ENBO, CELNIKER, SUSAN E, RIO, DONALD C, and DOUDNA, JENNIFER A

Subjects
Biological Sciences, Bioinformatics and Computational Biology, Genetics, Biotechnology, Underpinning research, 1.1 Normal biological development and functioning, Generic health relevance, Amino Acid Sequence, Animals, Autoantigens, Base Sequence, Binding Sites, Cloning, Molecular, Drosophila, Gene Expression Profiling, Genetic Variation, Molecular Sequence Data, Nucleic Acid Conformation, Protein Isoforms, Protein Structure, Secondary, RNA Splicing, RNA, Small Nuclear, Ribonucleoproteins, Small Nuclear, Spliceosomes, snRNP Core Proteins, US snRNA, noncoding RNA, Biochemistry and Cell Biology, Developmental Biology, Biochemistry and cell biology
Abstract

Distinct isoforms of spliceosomal RNAs may be involved in regulating pre-messenger RNA splicing in eukaryotic cells. During a large-scale effort to identify small noncoding RNAs in Drosophila, we isolated a U5 snRNA-like molecule containing a 5' segment identical to that of the canonical (major) U5 snRNA but with a variant Sm binding site and a distinct 3' hairpin sequence. Based on this finding, another six similar U5 snRNA-like sequences were identified within the Drosophila genome by sequence similarity to the invariant loop in the 5' half of U5. Interestingly, although all of these variants are expressed in vivo, each shows a distinct temporal expression profile during Drosophila development, and one is expressed primarily in fly heads. The presence of these U5 snRNA variants within RNP particles suggests their role in splicing and implies a possible connection to regulation of developmental and tissue-specific gene expression.

Published
2005

65. Rapid and Efficient cDNA Library Screening by Self-Ligation of Inverse PCR Products (SLIP)

Author

Hoskins, Roger A., Stapleton, Mark, George, Reed A., Yu, Charles, Wan, Kenneth H., Carlson, Joseph W., and Celniker, Susan E.

Subjects
Basic biological sciences, cDNA transcriptome EST
Abstract

The production of comprehensive cDNA clone collections is an important goal of the human and model organism genome projects. cDNA sequences are used to determine the structures of transcripts, including splice junctions, polyadenylation sites, and 5' and 3' untranslated regions (UTRs). cDNA collections are also valuable resources for functional studies of genes and proteins. Expressed Sequence Tag (EST) sequencing is the method of choice for recovering cDNAs representing a majority of the transcripts encoded in a eukaryotic genome. However, EST sequencing samples a library at random, so it realizes diminishing returns as the project progresses. To drive cDNA collections toward completion new methods are needed to recover cDNAs representing specific genes and alternative transcripts, including transcripts with low expression levels. We describe a simple and effective inverse-PCR-based method for screening plasmid libraries to recover intact cDNAs for specific transcripts. We tested the method by screening libraries used in our Drosophila EST projects for 153 transcription factor genes that were not yet represented by full-length cDNAs. We recovered target-specific clones for 104 of the genes: 46 exactly match, 30 improve and 28 partially match current gene annotations. Successful application of the screening method depends on cDNA library complexity and quality of the gene models. The approach should be effective for improving cDNA collections for other model organisms and the human. It also provides a simple and rapid method for isolating cDNAs of interest in any system for which plasmid cDNA libraries and complete or partial gene sequences are available.

Published
2005

67. Heterochromatic sequences in a Drosophila whole-genome shotgun assembly.

Author

Hoskins, Roger A, Smith, Christopher D, Carlson, Joseph W, Carvalho, A Bernardo, Halpern, Aaron, Kaminker, Joshua S, Kennedy, Cameron, Mungall, Chris J, Sullivan, Beth A, Sutton, Granger G, Yasuhara, Jiro C, Wakimoto, Barbara T, Myers, Eugene W, Celniker, Susan E, Rubin, Gerald M, and Karpen, Gary H

Subjects
Heterochromatin, Animals, Drosophila melanogaster, DNA Transposable Elements, Contig Mapping, Sequence Analysis, DNA, Genome, Algorithms, Software, Databases, Genetic, Sequence Analysis, DNA, Databases, Genetic, Bioinformatics, Environmental Sciences, Biological Sciences, Information and Computing Sciences
Abstract

BACKGROUND:Most eukaryotic genomes include a substantial repeat-rich fraction termed heterochromatin, which is concentrated in centric and telomeric regions. The repetitive nature of heterochromatic sequence makes it difficult to assemble and analyze. To better understand the heterochromatic component of the Drosophila melanogaster genome, we characterized and annotated portions of a whole-genome shotgun sequence assembly. RESULTS:WGS3, an improved whole-genome shotgun assembly, includes 20.7 Mb of draft-quality sequence not represented in the Release 3 sequence spanning the euchromatin. We annotated this sequence using the methods employed in the re-annotation of the Release 3 euchromatic sequence. This analysis predicted 297 protein-coding genes and six non-protein-coding genes, including known heterochromatic genes, and regions of similarity to known transposable elements. Bacterial artificial chromosome (BAC)-based fluorescence in situ hybridization analysis was used to correlate the genomic sequence with the cytogenetic map in order to refine the genomic definition of the centric heterochromatin; on the basis of our cytological definition, the annotated Release 3 euchromatic sequence extends into the centric heterochromatin on each chromosome arm. CONCLUSIONS:Whole-genome shotgun assembly produced a reliable draft-quality sequence of a significant part of the Drosophila heterochromatin. Annotation of this sequence defined the intron-exon structures of 30 known protein-coding genes and 267 protein-coding gene models. The cytogenetic mapping suggests that an additional 150 predicted genes are located in heterochromatin at the base of the Release 3 euchromatic sequence. Our analysis suggests strategies for improving the sequence and annotation of the heterochromatic portions of the Drosophila and other complex genomes.

Published
2002

69. Organogenetic transcriptomes of the Drosophila embryo at single cell resolution.

Author

Da Peng, Jackson, Dorian, Palicha, Bianca, Kernfeld, Eric, Laughner, Nathaniel, Shoemaker, Ashleigh, Celniker, Susan E., Loganathan, Rajprasad, Cahan, Patrick, and Andrew, Deborah J.

Subjects
DROSOPHILA, TRANSCRIPTOMES, GERM cells, RNA sequencing, SALIVARY glands
Abstract

To gain insight into the transcription programs activated during the formation of Drosophila larval structures, we carried out single cell RNA sequencing during two periods of Drosophila embryogenesis: stages 10-12, when most organs are first specified and initiate morphological and physiological specialization; and stages 13-16, when organs achieve their final mature architectures and begin to function. Our data confirm previous findings with regards to functional specialization of some organs - the salivary gland and trachea - and clarify the embryonic functions of another - the plasmatocytes. We also identify two early developmental trajectories in germ cells and uncover a potential role for proteolysis during germline stem cell specialization. We identify the likely cell type of origin for key components of the Drosophila matrisome and several commonly used Drosophila embryonic cell culture lines. Finally, we compare our findings with other recent related studies and with other modalities for identifying tissue-specific gene expression patterns. These data provide a useful community resource for identifying many new players in tissue-specific morphogenesis and functional specialization of developing organs. [ABSTRACT FROM AUTHOR]

Published
2024
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71. Supplementary Tables S1-S4 from Amplification of PVT1 Contributes to the Pathophysiology of Ovarian and Breast Cancer

Author

Guan, Yinghui, primary, Kuo, Wen-Lin, primary, Stilwell, Jackie L., primary, Takano, Hirokuni, primary, Lapuk, Anna V., primary, Fridlyand, Jane, primary, Mao, Jian-Hua, primary, Yu, Mamie, primary, Miller, Melinda A., primary, Santos, Jennifer L., primary, Kalloger, Steve E., primary, Carlson, Joseph W., primary, Ginzinger, David G., primary, Celniker, Susan E., primary, Mills, Gordon B., primary, Huntsman, David G., primary, and Gray, Joe W., primary

Published
2023
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72. Supplementary Figures S1-S2 from Amplification of PVT1 Contributes to the Pathophysiology of Ovarian and Breast Cancer

Author

Guan, Yinghui, primary, Kuo, Wen-Lin, primary, Stilwell, Jackie L., primary, Takano, Hirokuni, primary, Lapuk, Anna V., primary, Fridlyand, Jane, primary, Mao, Jian-Hua, primary, Yu, Mamie, primary, Miller, Melinda A., primary, Santos, Jennifer L., primary, Kalloger, Steve E., primary, Carlson, Joseph W., primary, Ginzinger, David G., primary, Celniker, Susan E., primary, Mills, Gordon B., primary, Huntsman, David G., primary, and Gray, Joe W., primary

Published
2023
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81. Correction to: DNA copy number evolution in Drosophila cell lines

Author

Lee, Hangnoh, McManus, C. Joel, Cho, Dong-Yeon, Eaton, Matthew, Renda, Fioranna, Somma, Maria Patrizia, Cherbas, Lucy, May, Gemma, Powell, Sara, Zhang, Dayu, Zhan, Lijun, Resch, Alissa, Andrews, Justen, Celniker, Susan E., Cherbas, Peter, Przytycka, Teresa M., Gatti, Maurizio, Oliver, Brian, Graveley, Brenton, and MacAlpine, David

Published
2019
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82. Binding profiles for 961 Drosophilaand C. eleganstranscription factors reveal tissue-specific regulatory relationships

Author

Kudron, Michelle, Gevirtzman, Louis, Victorsen, Alec, Lear, Bridget C., Gao, Jiahao, Xu, Jinrui, Samanta, Swapna, Frink, Emily, Tran-Pearson, Adri, Huynh, Chau, Vafeados, Dionne, Hammonds, Ann, Fisher, William, Wall, Martha, Wesseling, Greg, Hernandez, Vanessa, Lin, Zhichun, Kasparian, Mary, White, Kevin, Allada, Ravi, Gerstein, Mark, Hillier, LaDeana, Celniker, Susan E., Reinke, Valerie, and Waterston, Robert H.

Abstract

A catalog of transcription factor (TF) binding sites in the genome is critical for deciphering regulatory relationships. Here, we present the culmination of the efforts of the modENCODE (model organism Encyclopedia of DNA Elements) and modERN (model organism Encyclopedia of Regulatory Networks) consortia to systematically assay TF binding events in vivo in two major model organisms, Drosophila melanogaster(fly) and Caenorhabditis elegans(worm). These data sets comprise 605 TFs identifying 3.6 M sites in the fly and 356 TFs identifying 0.9 M sites in the worm, and represent the majority of the regulatory space in each genome. We demonstrate that TFs associate with chromatin in clusters termed “metapeaks,” that larger metapeaks have characteristics of high-occupancy target (HOT) regions, and that the importance of consensus sequence motifs bound by TFs depends on metapeak size and complexity. Combining ChIP-seq data with single-cell RNA-seq data in a machine-learning model identifies TFs with a prominent role in promoting target gene expression in specific cell types, even differentiating between parent–daughter cells during embryogenesis. These data are a rich resource for the community that should fuel and guide future investigations into TF function. To facilitate data accessibility and utility, all strains expressing green fluorescent protein (GFP)-tagged TFs are available at the stock centers for each organism. The chromatin immunoprecipitation sequencing data are available through the ENCODE Data Coordinating Center, GEO, and through a direct interface that provides rapid access to processed data sets and summary analyses, as well as widgets to probe the cell-type-specific TF–target relationships.

Published
2024
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91. Next-generation large-scale binary protein interaction network for Drosophila

Author

Tang, Hong-Wen, primary, Spirohn, Kerstin, additional, Hu, Yanhui, additional, Hao, Tong, additional, Kovács, István A., additional, Gao, Yue, additional, Binari, Richard, additional, Yang-Zhou, Donghui, additional, Wan, Kenneth H., additional, Bader, Joel S., additional, Balcha, Dawit, additional, Bian, Wenting, additional, Booth, Benjamin W., additional, Cote, Atina G., additional, De Rouck, Steffi, additional, Desbuleux, Alice, additional, Kim, Dae-Kyum, additional, Knapp, Jennifer J., additional, Lee, Wen Xing, additional, Lemmens, Irma, additional, Li, Cathleen, additional, Li, Mian, additional, Li, Roujia, additional, Lim, Hyobin Julianne, additional, Luck, Katja, additional, Markey, Dylan, additional, Pollis, Carl, additional, Rangarajan, Sudharshan, additional, Rodiger, Jonathan, additional, Schlabach, Sadie, additional, Shen, Yun, additional, TeeKing, Bridget, additional, Roth, Frederick P., additional, Tavernier, Jan, additional, Calderwood, Michael A., additional, Hill, David E., additional, Celniker, Susan E., additional, Vidal, Marc, additional, Perrimon, Norbert, additional, and Mohr, Stephanie E., additional

Published
2022
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92. Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE

Author

The modeENCODE Consortium, Roy, Sushmita, Ernst, Jason, Kharchenko, Peter V., Kheradpour, Pouya, Negre, Nicolas, Eaton, Matthew L., Landolin, Jane M., Bristow, Christopher A., Ma, Lijia, Lin, Michael F., Washietl, Stefan, Arshinoff, Bradley I., Ay, Ferhat, Meyer, Patrick E., Robine, Nicolas, Washington, Nicole L., Di Stefano, Luisa, Berezikov, Eugene, Brown, Christopher D., Candeias, Rogerio, Carlson, Joseph W., Carr, Adrian, Jungreis, Irwin, Marbach, Daniel, Sealfon, Rachel, Tolstorukov, Michael Y., Will, Sebastian, Alekseyenko, Artyom A., Artieri, Carlo, Booth, Benjamin W., Brooks, Angela N., Dai, Qi, Davis, Carrie A., Duff, Michael O., Feng, Xin, Gorchakov, Andrey A., Gu, Tingting, Henikoff, Jorja G., Kapranov, Philipp, Li, Renhua, MacAlpine, Heather K., Malone, John, Minoda, Aki, Nordman, Jared, Okamura, Katsutomo, Perry, Marc, Powell, Sara K., Riddle, Nicole C., Sakai, Akiko, Samsonova, Anastasia, Sandler, Jeremy E., Schwartz, Yuri B., Sher, Noa, Spokony, Rebecca, Sturgill, David, van Baren, Marijke, Wan, Kenneth H., Yang, Li, Yu, Charles, Feingold, Elise, Good, Peter, Guyer, Mark, Lowdon, Rebecca, Ahmad, Kami, Andrews, Justen, Berger, Bonnie, Brenner, Steven E., Brent, Michael R., Cherbas, Lucy, Elgin, Sarah C. R., Gingeras, Thomas R., Grossman, Robert, Hoskins, Roger A., Kaufman, Thomas C., Kent, William, Kuroda, Mitzi I., Orr-Weaver, Terry, Perrimon, Norbert, Pirrotta, Vincenzo, Posakony, James W., Ren, Bing, Russell, Steven, Cherbas, Peter, Graveley, Brenton R., Lewis, Suzanna, Micklem, Gos, Oliver, Brian, Park, Peter J., Celniker, Susan E., Henikoff, Steven, Karpen, Gary H., Lai, Eric C., MacAlpine, David M., Stein, Lincoln D., White, Kevin P., and Kellis, Manolis

Published
2010

94. Tools for Neuroanatomy and Neurogenetics in Drosophila

Author

Pfeiffer, Barret D., Jenett, Arnim, Hammonds, Ann S., Ngo, Teri-T B., Misra, Sima, Murphy, Christine, Scully, Audra, Carlson, Joseph W., Wan, Kenneth H., Laverty, Todd R., Mungall, Chris, Svirskas, Rob, Kadonaga, James T., Doe, Chris Q., Eisen, Michael B., Celniker, Susan E., and Rubin, Gerald M.

Published
2008
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95. A Protein Complex Network of Drosophila melanogaster

Author

Guruharsha, K.G., Rual, Jean-François, Zhai, Bo, Mintseris, Julian, Vaidya, Pujita, Vaidya, Namita, Beekman, Chapman, Wong, Christina, Rhee, David Y., Cenaj, Odise, McKillip, Emily, Shah, Saumini, Stapleton, Mark, Wan, Kenneth H., Yu, Charles, Parsa, Bayan, Carlson, Joseph W., Chen, Xiao, Kapadia, Bhaveen, VijayRaghavan, K., Gygi, Steven P., Celniker, Susan E., Obar, Robert A., and Artavanis-Tsakonas, Spyros

Published
2011
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97. Molecular and functional characterization of the Drosophila melanogaster conserved smORFome

Author

Bosch, Justin A., primary, Keith, Nathan, additional, Escobedo, Felipe, additional, Fisher, William F., additional, LaGraff, James Thai, additional, Rabasco, Jorden, additional, Wan, Kenneth H., additional, Weiszmann, Richard, additional, Hu, Yanhui, additional, Kondo, Shu, additional, Brown, James B., additional, Perrimon, Norbert, additional, and Celniker, Susan E., additional

Published
2022
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