51. Rat neuropeptidomics by LC-MS/MS and MALDI-FTMS: Enhanced dissection and extraction techniques coupled with 2D RP-RP HPLC.
- Author
-
Dowell JA, Heyden WV, and Li L
- Subjects
- Amino Acid Sequence, Animals, Chromatography, High Pressure Liquid, Cryoultramicrotomy methods, Hydrogen-Ion Concentration, Molecular Sequence Data, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization methods, Neuropeptides genetics, Proteomics methods, Rats genetics
- Abstract
Recently developed sample preparation techniques employing microwave irradiation have enabled the comprehensive study of endogenous mammalian neuropeptides. These methods reduce interference from post-mortem protein degradation by deactivating proteases via heat denaturation. Alternatively, we have developed a protocol using cryostat dissection and a boiling extraction buffer to achieve a similar effect. This novel methodology greatly reduces post-mortem protein contamination and increases neuropeptide identification without the use of specialized equipment. In addition, a 2D HPLC scheme employing differential pH selectivity in the first and second dimensions has been used to enhance neuropeptidome coverage. By using our novel dissection protocol in tandem with 2D RP-RP HPLC, we were able to identify a total of 56 peptides from known neuropeptide precursors, including 17 previously unidentified peptides. The use of cryostat dissection and two-dimensional RP-RP HPLC enhances the detection of novel neuropeptides by deactivating proteases and reducing sample complexity.
- Published
- 2006
- Full Text
- View/download PDF