236 results on '"Hoh, C"'
Search Results
52. DEVELOPMENT OF AN AUTOMATED REGISTRATION ALGORITHM FOR DETECTION AND CORRECTION OF PATIENT MOVEMENT IN CARDIAC PET IMAGING
- Author
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Harris, G C, primary, Hoh, C K, additional, Dahlbom, M, additional, Khanna, S, additional, DiCarli, M, additional, Hawkins, R A, additional, Schelbert, H R, additional, Phelps, M E, additional, and Maddahi, J, additional
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- 1992
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53. WHOLE-BODY PET WITH FDG FOR DETECTION OF BOTH PRIMARY AND METASTATIC MALIGNANCIES: AN UPDATE OF THE CLINICAL EXPERIENCE
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Hoh, C K, primary, Hawkins, R A, additional, Glaspy, J A, additional, Lee, H S, additional, Dahlbom, M, additional, Tse, N Y, additional, Hoffman, E J, additional, Schiepers, C, additional, Choi, Y, additional, Rege, S, additional, Nitzche, E, additional, Maddahi, J, additional, and Phelps, M E, additional
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- 1992
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54. EVALUATION OF BRAIN TUMORS WITH TL-201 SPECT STUDIES: UPDATED CORRELATION WITH FDG PET AND HISTOLOGICAL RESULTS
- Author
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Maass, A J, primary, Hoh, C K, additional, Khanna, S, additional, Harris, G C, additional, Black, K L, additional, Becker, D P, additional, Maddahi, J, additional, Mazziota, J C, additional, Marciano, D M, additional, and Hawkins, R A, additional
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- 1992
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55. Exaggerated renal vasoconstriction during exercise in heart failure patients.
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Middlekauff, H R, Nitzsche, E U, Hoh, C K, Hamilton, M A, Fonarow, G C, Hage, A, and Moriguchi, J D
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- 2000
56. A practical kinetic model that considers endproduct inhibition in anaerobic digestion processes by including the equilibrium constant.
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Hoh, C. Y. and Cord-Ruwisch, R.
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- 1996
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57. MD@: a physician-friendly decision analysis tool.
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Gambhir SS, Gupta P, Shepherd JE, Allen MA, Hoh C, Maddahi J, and Phelps ME
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- 1998
58. Ameloblastic carcinoma: case report and review.
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Nagai, Noriyuki, Takeshita, Nobuyoshi, Nagatsuka, Hitoshi, Inoue, Masahisa, Nlshijima, Katsumi, Nojima, Tetsudo, Yamasaki, Masako, Hoh, Chofuku, Nagai, N, Takeshita, N, Nagatsuka, H, Inoue, M, Nishijima, K, Nojima, T, Yamasaki, M, and Hoh, C
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ODONTOGENIC tumors ,CANCER ,MOUTH tumors ,HISTOLOGY ,CANCER relapse ,CELL nuclei ,COLLAGEN ,CYTOPLASM ,MANDIBLE ,PROTEINS ,AMELOBLASTOMA - Abstract
The histologic classification for odontogenic carcinomas is still under revision; thus, the differentiation between the terms "malignant ameloblastoma" and "ameloblastic carcinoma" has not been definitely stated. Nevertheless, it is recommended to reserve the former for those lesions that, in spite of an apparently innocuous histology, have given origin to metastatic growths, and to apply the latter for those ameloblastomas in which there is histologic evidence of malignancy in the primary, recurrent or metastatic lesions. A case of an ameloblastic carcinoma in the mandible is presented. Histologically, it was characterized by areas with features of a typical ameloblastoma and areas with anaplastic appearances. [ABSTRACT FROM AUTHOR]
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- 1991
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59. Decision Tree Sensitivity Analysis for Cost-Effectiveness of FDG-PET in the Staging and Management of Non-Small-Cell Lung Carcinoma.
- Author
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Gambhir, S. S., Hoh, C. K., Phelps, M. E., Madar, I., and Maddahi, J.
- Published
- 1996
60. Results of a Clinical Receiver Operating Characteristic Study Comparing Filtered Backprojection and Maximum Likelihood Estimator Images in FDG PET Studies.
- Author
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Llacer, J., Veklerov, E., Baxter, L. R., Grafton, S. T., Griffeth, L. K., Hawkins, R. A., Hoh, C. K., Mazziotta, J. C., Hoffman, E. J., and Metz, C. E.
- Published
- 1993
61. Whole-Body Positron Emission Tomography: Part I. Methods and Performance Characteristics.
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Dahlbom, M., Hoffman, E. J., Hoh, C. K., Schiepers, C., Rosenqvist, G., Hawkins, R. A., and Phelps, M. E.
- Published
- 1992
62. The use of positron emission tomography for early detection of recurrent head and neck squamous cell carcinoma in postradiotherapy patients... presented at the meeting of the Western Section of the American Laryngological, Rhinological and Otological Society, Inc., La Jolla, Calif., January 8, 1994.
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Bailet JW, Sercarz JA, Abemayor E, Anzai Y, Lufkin RB, Hoh CK, Bailet, J W, Sercarz, J A, Abemayor, E, Anzai, Y, Lufkin, R B, and Hoh, C K
- Abstract
Positron emission tomography (PET) has recently proved to be highly sensitive in detecting known extracranial head and neck squamous cell carcinomas when compared to computed tomography and magnetic resonance imaging (MRI). The ability of PET to detect early subclinical recurrent squamous cell malignancies in patients who received primary radiotherapy was evaluated. A new PET-MRI coregistration technique was used to determine precise anatomic tumor location, enabling directed biopsies to confirm the presence of malignancy, and to plan additional therapeutic strategies. Ten patients underwent PET evaluation with intravenous [18F]-fluorodeoxyglucose and received postradiotherapy MRI scans. In all cases, PET accurately detected the presence of recurrent disease despite negative or equivocal MRI scans and indeterminate clinical examinations. PET appears to be highly effective in detecting early recurrent head and neck squamous cell malignancies in postirradiated patients. [ABSTRACT FROM AUTHOR]
- Published
- 1995
63. Use of positron emission tomography with fluorodeoxyglucose in patients with extracranial head and neck cancers.
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Rege, Sheila, Maass, Adam, Chaiken, Lisa, Hoh, Carl K., Choi, Yong, Lufkin, Robert, Anzai, Yoshimi, Juillard, Guy, Maddahi, Jamshid, Phelps, Michael E., Rege, S, Maass, A, Chaiken, L, Hoh, C K, Choi, Y, Lufkin, R, Anzai, Y, Juillard, G, Maddahi, J, and Phelps, M E
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- 1994
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64. Imaging of pulmonary mass lesions with whole-body positron emission tomography and fluorodeoxyglucose.
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Rege, Sheila D., Hoh, Carl K., Glaspy, John A., Aberle, Denise R., Dahlbom, Magnus, Razavi, Mahmood K., Phelps, Michael E., Hawkins, Randall A., Rege, S D, Hoh, C K, Glaspy, J A, Aberle, D R, Dahlbom, M, Razavi, M K, Phelps, M E, and Hawkins, R A
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- 1993
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65. [99mTc]MAG3-mannosyl-dextran: a receptor-binding radiopharmaceutical for sentinel node detection
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Vera, D. R., Wallace, A. M., and Hoh, C. K.
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- 2001
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66. Regional cerebral activity in normal and pathological perception of visceral pain
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Silverman, D., Munakata, J., Ennes, H., Mandelkern, M., Hoh, C., and Mayer, E.
- Abstract
BACKGROUND & AIMS: To characterize the cerebral processing of noxious visceral events, changes in regional cerebral blood flow associated with perception of intestinal pain were examined. METHODS: The effects of rectal pressure stimuli on regional cerebral blood flow were assessed with 15O-water positron emission tomography (PET) in 12 subjects, half with irritable bowel syndrome (IBS). PET scans were obtained at baseline and during both actual and simulated delivery of anticipated stimuli. Changes in regional cerebral blood flow were interpreted using statistical parametric mapping and region of interest methods of analysis. RESULTS: In healthy subjects, perception of pain during actual or simulated delivery of painful stimuli was significantly associated (P > 0.01) with activity of the anterior cingulate cortex (ACC; Brodmann's areas 24 and 32), whereas no ACC response to perception of nonpainful stimuli was observed. In patients with IBS, the ACC failed to respond to the same stimuli, whereas significant activation (P > 0.01) of the left prefrontal cortex (maximal in Brodmann's area 10) was seen. CONCLUSIONS: The perception of acute rectal pain is associated with activation of the ACC in healthy subjects, and patients with IBS show an aberrant brain activation pattern both during noxious rectal distention and during the anticipation of rectal pain. (Gastroenterology 1997 Jan;112(1):64-72)
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- 1997
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67. ROC and localization ROC analyses of lesion detection in whole-body FDG PET: Effects of acquisition mode, attenuation correction and reconstruction algorithm
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Farquhar, T. H., Llacer, J., Hoh, C. K., Czernin, J., Gambhir, S. S., Seltzer, M. A., Silverman, D. H. S., Qi, J., Ching-Han Hsu, and Hoffman, E. J.
68. Acetylene reduction by legume root nodule protoplasts
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BROUGHTON, W. J., primary, WOOL, K. C., additional, and HOH, C. H., additional
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- 1976
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69. The UCLA experience of whole body positron emission tomography in human breast cancer
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Tse, N., Hoh, C., Hawkins, R., and Glaspy, J.
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Evaluation ,Positron emission tomography -- Evaluation ,Breast cancer ,PET imaging -- Evaluation - Abstract
AUTHORS: N. Tse, C. Hoh, R. Hawkins and J. Glaspy. University of California, Los Angeles, School of Medicine, Los Angeles, California. According to the authors' abstract of a poster presentation [...]
- Published
- 1992
70. Whole body positron emission tomography with 2-(F18)-fluoro-2-deoxy-D-glucose can detect recurrent ovarian carcinoma
- Author
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Karlan, B., Lee, M., Tse, N., Hoh, C., Cane, P., Hawkins, R., and Glaspy, J.
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Diagnosis ,Positron emission tomography ,Cancer recurrence -- Diagnosis ,Ovarian cancer -- Diagnosis ,PET imaging ,Cancer -- Relapse - Abstract
AUTHORS: B. Karlan, M. Lee, N. Tse, C. Hoh, P. Cane, R. Hawkins and J. Glaspy. Cedars-Sinai Medical Center, University of California School of Medicine, Los Angeles, California 90048. According [...]
- Published
- 1993
71. Experimental evidence for the need of thermodynamic considerations in modelling of anaerobic environmental bioprocesses
- Author
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Cord-Ruwisch, R. and Hoh, C.-Y.
- Subjects
- *
MATHEMATICAL models , *THERMODYNAMICS , *WASTEWATER treatment - Abstract
For modeling of biological processes that operate close to the dynamic equilibrium (e.g. anaerobic processes), it is critical to prevent the prediction of positive reaction rates when the reaction has already reached dynamic equilibrium. Traditional Michaelis-Menton based models were found to violate the laws of thermodynamics as they predicted positive reaction rates for reactions that were endergonic due to high endproduct concentrations. The inclusion of empirical 'product inhibition factors' as suggested by previous work could not prevent this problem. This paper compares the predictions of the Michaelis-Menten Model (with and without product inhibition factors) and the Equilibrium Based Model (which has a thermodynamic term introduced into itsrate equation) with experimental results of reactions in anaerobic bacterial environments. In contrast to the Michaelis-Menten based models that used traditional inhibition factors, the Equilibrium Based Model correctly predicted the nature and the degree of inhibition due to endproduct accumulation. Moreover, this model also correctly predicted when reaction rates must be zero due to the free energy change ofthe conversion reaction being zero. With these added advantages, theEquilibrium Based Model thus seemed to provide a scientifically correct and more realistic basis for a variety of models that describe anaerobic biosystems. ) 1997 IAWQ. Published by Elsevier Science Ltd. [ABSTRACT FROM AUTHOR]
- Published
- 1997
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72. PET FDG studies in oncology
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Hawkins, R. A. and Hoh, C. K.
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- 1994
- Full Text
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73. Chapter 29 - Feature-Matching Axial Averaging Method for Enhancing Signal-to-Noise Ratio of Images Generated by New Generation PET Scanners
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Huang, S.C., Yang, J., Dahlbom, M., Hoh, C., Czernin, J., Zhou, Y., and Yu, D.C.
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- 1996
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74. Study on the use of transmission scans for whole body PET attenuation correction
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Hoh, C [Univ. of California, Los Angeles, CA (United States). Dept. of Molecular and Medical Pharmacology]
- Published
- 1994
75. Bone metabolic activity measured with positron emission tomography and [18F]fluoride ion in renal osteodystrophy: correlation with bone histomorphometry
- Author
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Cristina Messa, William G. Goodman, Yong Choi, Randall A. Hawkins, Carl K. Hoh, Isidro B. Salusky, Michael E. Phelps, A. R. Nissenson, Messa, M, Goodman, W, Hoh, C, Choi, Y, Nissenson, A, Salusky, I, Phelps, M, and Hawkins, R
- Subjects
Adult ,Male ,Parathyroidectomy ,Fluorine Radioisotopes ,medicine.medical_specialty ,Adolescent ,Bone disease ,Endocrinology, Diabetes and Metabolism ,medicine.medical_treatment ,Clinical Biochemistry ,Biochemistry ,Bone and Bones ,Bone resorption ,Parathyroid Glands ,Endocrinology ,Calcitriol ,Internal medicine ,Bone cell ,medicine ,Humans ,Renal osteodystrophy ,Bone Resorption ,Chronic Kidney Disease-Mineral and Bone Disorder ,medicine.diagnostic_test ,business.industry ,Chemistry ,Biochemistry (medical) ,[18F] fluoride ,Phosphorus ,Middle Aged ,Models, Theoretical ,Alkaline Phosphatase ,medicine.disease ,Parathyroid Hormone ,Positron emission tomography ,Regression Analysis ,Calcium ,Female ,Hyperparathyroidism, Secondary ,Secondary hyperparathyroidism ,Nuclear medicine ,business ,Emission computed tomography ,Tomography, Emission-Computed - Abstract
We evaluated the bone metabolic activity in patients with renal osteodystrophy using positron emission tomography and [18F]fluoride ion. Eight patients had secondary hyperparathyroidism (HPT), and three had low-turnover bone disease. Eleven normal subjects were also studied, and three of the eight HPT patients were reevaluated after therapy. A rate constant (K) describing the net transport of [18F] fluoride ion into a bound compartment in bone was calculated using both a three-compartment model and Patlak graphical analysis. Values of K were compared with biochemical data and with histomorphometric indices. The results indicate that K is significantly higher (P < 0.01) in HPT patients than in normal subjects and patients with low-turnover bone disease. Values of K correlated with serum alkaline phosphatase (r = 0.81) and PTH (r = 0.93) levels and with histomorphometric indices of bone formation rate (r = 0.84, P < 0.01) and eroded perimeter (r = 0.77, P < 0.05). Values of K decreased by 40 and 30%, respectively, in two patients who underwent parathyroidectomy and medical therapy. Positron emission tomography studies of bone using [18F]fluoride ion can differentiate low turnover from high turnover lesions of renal osteodystrophy and provide quantitative estimates of bone cell activity that correlate with histomorphometric data. We evaluated the bone metabolic activity in patients with renal osteodystrophy using positron emission tomography and [18F]fluoride ion. Eight patients had secondary hyperparathyroidism (HPT), and three had low-turnover bone disease. Eleven normal subjects were also studied, and three of the eight HPT patients were reevaluated after therapy. A rate constant (K) describing the net transport of [18F] fluoride ion into a bound compartment in bone was calculated using both a three-compartment model and Patlak graphical analysis. Values of K were compared with biochemical data and with histomorphometric indices. The results indicate that K is significantly higher (P < 0.01) in HPT patients than in normal subjects and patients with low-turnover bone disease. Values of K correlated with serum alkaline phosphatase (r = 0.81) and PTH (r = 0.93) levels and with histomorphometric indices of bone formation rate (r = 0.84, P < 0.01) and eroded perimeter (r = 0.77, P < 0.05). Values of K decreased by 40 and 30%, respectively, in two patients who underwent parathyroidectomy and medical therapy. Positron emission tomography studies of bone using [18F]fluoride ion can differentiate low turnover from high turnover lesions of renal osteodystrophy and provide quantitative estimates of bone cell activity that correlate with histomorphometric data. © 1993 by The Endocrine Society.
- Published
- 1993
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76. Quantification of Glucose Utilization in Liver Metastases
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Edwin L. Jacobs, Carl K. Hoh, Sung-Cheng Huang, Yong Choi, John A. Glaspy, Egbert U. Nitzsche, Sheila Rege, Michael E. Phelps, Randall A. Hawkins, Cristina Messa, Messa, M, Choi, Y, Hoh, C, Jacobs, E, Glaspy, J, Rege, S, Nitzsche, E, Huang, S, Phelps, M, and Hawkins, R
- Subjects
Adult ,Male ,Glucose utilization ,medicine.medical_specialty ,Breast Neoplasms ,Deoxyglucose ,Carbohydrate metabolism ,PET, FDG ,Fluorodeoxyglucose F18 ,Parametric imaging ,Humans ,Medicine ,Radiology, Nuclear Medicine and imaging ,Glycolysis ,Melanoma ,Fluorodeoxyglucose ,medicine.diagnostic_test ,business.industry ,Splenic Neoplasms ,Fdg uptake ,Liver Neoplasms ,Middle Aged ,carbohydrates (lipids) ,Glucose ,Positron emission tomography ,Female ,Radiology ,business ,Nuclear medicine ,Tomography, Emission-Computed ,medicine.drug - Abstract
Positron emission tomography (PET) fluorodeoxyglucose (FDG) studies are useful for identifying foci of increased FDG uptake in liver metastases, because of the high glycolytic rate of malignancies, as well as for monitoring changes in tumor glucose metabolism during treatment. We performed 15 kinetic PET FDG studies in four patients with metastatic liver disease. We produced parametric images of glucose metabolism in terms of the rate constant K (ml/min/g) for net phosphorylation of FDG. Tumor K values, estimated with nonlinear regression, correlated well with K values estimated with Patlak graphical analysis (r = 0.96), validating the assumption of low k4* values in liver metastases and supporting the use of pixel by pixel Patlak plot analysis of the data to generate parametric images. In normal liver, high levels of glucose-6-phosphatase produce much higher values of k4* than in liver metastases. Uncorrected Patlak graphical analysis underestimates K in normal liver, but this further increases the contrast between tumor and liver and facilitates both tumor detection and quantification. The technique is computationally feasible and is well suited for serial evaluations of tumor metabolism during treatment.
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- 1992
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77. Evaluation of the effect of glucose ingestion and kinetic model configurations of FDG in the normal liver
- Author
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Y, Choi, R A, Hawkins, S C, Huang, R C, Brunken, C K, Hoh, C, Messa, E U, Nitzsche, M E, Phelps, H R, Schelbert, Choi, Y, Hawkins, R, Huang, S, Brunken, R, Hoh, C, Messa, M, Nitzsche, E, Phelps, M, and Schelbert, H
- Subjects
Adult ,Blood Glucose ,Male ,Adolescent ,Administration, Oral ,Deoxyglucose ,liverglucosemetabolicrate ,Models, Biological ,effectof oral glucose ,Glucose ,Liver ,Fluorodeoxyglucose F18 ,Humans ,fluorodeoxy-D-glucose ,positron emissiontomography - Abstract
The liver plays an important role in glucose homeostasis. PET studies with 2-[F-18]fluoro-2-deoxy-D-glucose (FDG) of the liver (e.g., in neoplasms) require an understanding of the effects of dietary conditions on hepatic FDG uptake. METHODS: Twenty studies were performed on 10 normal volunteers (ages 24 +/- 4) after fasting 4 to 19 hr and again after oral consumption of 100 g of dextrose to investigate tracer kinetic model configurations of FDG in the normal liver and to evaluate the impact of oral glucose on liver in normal subjects. Dynamic PET images were acquired for about 1 hr using a Siemens/CTI 931 tomograph. RESULTS: A three-compartment model with an input function delay time parameter was the statistically preferred model configuration. The model estimated transport rate constant from plasma to liver, K1, increased significantly (p < 0.05) from 0.864 +/- 0.136 ml/min/g in fasting studies to 1.058 +/- 0.269 ml/min/g in postglucose studies. Glucose loading also significantly increased (p < 0.01) the rate constant for FDG phosphorylation, k3, from 0.005 +/- 0.003 min-1 in fasting studies to 0.013 +/- 0.007 min-1 in postglucose administration and, consequently, significantly increased both the phosphorylation fraction (k3/(k2 + k3)) and the influx constant (K1k3/(k2 + k3)). No significant differences in the liver-to-plasma transport rate constant, k2, dephosphorylation constant, k4, or distribution volume of FDG (K1/(k2 + k3)) were observed. CONCLUSION: Dynamic FDG-PET studies can be used to evaluate kinetics of liver glucose metabolism. The results indicate that dietary conditions have a significant effect on hepatic FDG kinetics. Because of the higher net FDG uptake by normal liver after glucose loading, fasting conditions are preferred for FDG liver tumor studies to increase the tumor-to-background contrast.
- Published
- 1994
78. Quantitating tumor glucose metabolism with FDG and PET
- Author
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Hawkins, RA, Choi, Y, Huang, SC, Hoh, CK, Phelps, ME, MESSA, MARIA CRISTINA, Hawkins, R, Choi, Y, Huang, S, Messa, M, Hoh, C, and Phelps, M
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FDG, PET - Published
- 1992
79. Combining DNA and protein alignments to improve genome annotation with LiftOn.
- Author
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Chao KH, Heinz JM, Hoh C, Mao A, Shumate A, Pertea M, and Salzberg SL
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- Animals, Humans, Mice, Arabidopsis genetics, Rats, Open Reading Frames, Genome, Oryza genetics, Bees genetics, Drosophila melanogaster genetics, Sequence Analysis, DNA methods, Software, Molecular Sequence Annotation methods, Algorithms, Sequence Alignment methods
- Abstract
As the number and variety of assembled genomes continue to grow, the number of annotated genomes is falling behind, particularly for eukaryotes. DNA-based mapping tools help to address this challenge, but they are only able to transfer annotation between closely related species. Here we introduce LiftOn, a homology-based software tool that integrates DNA and protein alignments to enhance the accuracy of genome-scale annotation and to allow mapping between relatively distant species. LiftOn's protein-centric algorithm considers both types of alignments, chooses optimal open reading frames, resolves overlapping gene loci, and finds additional gene copies when they exist. LiftOn can reliably transfer annotation between genomes representing members of the same species, as we demonstrate on human, mouse, honeybee, rice, and Arabidopsis thaliana It can further map annotation effectively across species pairs as far apart as mouse and rat or Drosophila melanogaster and Drosophila erecta ., (© 2025 Chao et al.; Published by Cold Spring Harbor Laboratory Press.)
- Published
- 2025
- Full Text
- View/download PDF
80. Cross-ancestry atlas of gene, isoform, and splicing regulation in the developing human brain.
- Author
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Wen C, Margolis M, Dai R, Zhang P, Przytycki PF, Vo DD, Bhattacharya A, Matoba N, Tang M, Jiao C, Kim M, Tsai E, Hoh C, Aygün N, Walker RL, Chatzinakos C, Clarke D, Pratt H, Peters MA, Gerstein M, Daskalakis NP, Weng Z, Jaffe AE, Kleinman JE, Hyde TM, Weinberger DR, Bray NJ, Sestan N, Geschwind DH, Roeder K, Gusev A, Pasaniuc B, Stein JL, Love MI, Pollard KS, Liu C, and Gandal MJ
- Subjects
- Humans, Atlases as Topic, Autism Spectrum Disorder genetics, Gene Regulatory Networks, Genome-Wide Association Study, Protein Isoforms genetics, Protein Isoforms metabolism, Quantitative Trait Loci, Schizophrenia genetics, Transcriptome, Alternative Splicing, Brain metabolism, Brain growth & development, Brain embryology, Gene Expression Regulation, Developmental, Mental Disorders genetics
- Abstract
Neuropsychiatric genome-wide association studies (GWASs), including those for autism spectrum disorder and schizophrenia, show strong enrichment for regulatory elements in the developing brain. However, prioritizing risk genes and mechanisms is challenging without a unified regulatory atlas. Across 672 diverse developing human brains, we identified 15,752 genes harboring gene, isoform, and/or splicing quantitative trait loci, mapping 3739 to cellular contexts. Gene expression heritability drops during development, likely reflecting both increasing cellular heterogeneity and the intrinsic properties of neuronal maturation. Isoform-level regulation, particularly in the second trimester, mediated the largest proportion of GWAS heritability. Through colocalization, we prioritized mechanisms for about 60% of GWAS loci across five disorders, exceeding adult brain findings. Finally, we contextualized results within gene and isoform coexpression networks, revealing the comprehensive landscape of transcriptome regulation in development and disease.
- Published
- 2024
- Full Text
- View/download PDF
81. Combining DNA and protein alignments to improve genome annotation with LiftOn.
- Author
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Chao KH, Heinz JM, Hoh C, Mao A, Shumate A, Pertea M, and Salzberg SL
- Abstract
As the number and variety of assembled genomes continues to grow, the number of annotated genomes is falling behind, particularly for eukaryotes. DNA-based mapping tools help to address this challenge, but they are only able to transfer annotation between closely-related species. Here we introduce LiftOn, a homology-based software tool that integrates DNA and protein alignments to enhance the accuracy of genome-scale annotation and to allow mapping between relatively distant species. LiftOn's protein-centric algorithm considers both types of alignments, chooses optimal open reading frames, resolves overlapping gene loci, and finds additional gene copies where they exist. LiftOn can reliably transfer annotation between genomes representing members of the same species, as we demonstrate on human, mouse, honey bee, rice, and Arabidopsis thaliana . It can further map annotation effectively across species pairs as far apart as mouse and rat or Drosophila melanogaster and D. erecta .
- Published
- 2024
- Full Text
- View/download PDF
82. Discovering Intron Gain Events in Humans through Large-Scale Evolutionary Comparisons.
- Author
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Hoh C and Salzberg SL
- Abstract
The rapid growth in the number of sequenced genomes makes it possible to search for the appearance of entirely new introns in the human lineage. In this study, we compared the genomic sequences for 19,120 human protein-coding genes to a collection of 3493 vertebrate genomes, mapping the patterns of intron alignments onto a phylogenetic tree. This mapping allowed us to trace many intron gain events to precise locations in the tree, corresponding to distinct points in evolutionary history. We discovered 584 intron gain events, all of them relatively recent, in 514 distinct human genes. Among these events, we explored the hypothesis that intronization was the mechanism responsible for intron gain. Intronization events were identified by locating instances where human introns correspond to exonic sequences in homologous vertebrate genes. Although apparently rare, we found three compelling cases of intronization, and for each of those we compared the human protein sequence and structure to homologous genes that lack the introns.
- Published
- 2024
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83. Correction for Ghazali et al., "Transitioning from Soil to Host: Comparative Transcriptome Analysis Reveals the Burkholderia pseudomallei Response to Different Niches".
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Ghazali A-K, Firdaus-Raih M, Uthaya Kumar A, Lee W-K, Hoh C-C, and Nathan S
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- 2024
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- View/download PDF
84. Cross-ancestry, cell-type-informed atlas of gene, isoform, and splicing regulation in the developing human brain.
- Author
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Wen C, Margolis M, Dai R, Zhang P, Przytycki PF, Vo DD, Bhattacharya A, Matoba N, Jiao C, Kim M, Tsai E, Hoh C, Aygün N, Walker RL, Chatzinakos C, Clarke D, Pratt H, Consortium P, Peters MA, Gerstein M, Daskalakis NP, Weng Z, Jaffe AE, Kleinman JE, Hyde TM, Weinberger DR, Bray NJ, Sestan N, Geschwind DH, Roeder K, Gusev A, Pasaniuc B, Stein JL, Love MI, Pollard KS, Liu C, and Gandal MJ
- Abstract
Genomic regulatory elements active in the developing human brain are notably enriched in genetic risk for neuropsychiatric disorders, including autism spectrum disorder (ASD), schizophrenia, and bipolar disorder. However, prioritizing the specific risk genes and candidate molecular mechanisms underlying these genetic enrichments has been hindered by the lack of a single unified large-scale gene regulatory atlas of human brain development. Here, we uniformly process and systematically characterize gene, isoform, and splicing quantitative trait loci (xQTLs) in 672 fetal brain samples from unique subjects across multiple ancestral populations. We identify 15,752 genes harboring a significant xQTL and map 3,739 eQTLs to a specific cellular context. We observe a striking drop in gene expression and splicing heritability as the human brain develops. Isoform-level regulation, particularly in the second trimester, mediates the greatest proportion of heritability across multiple psychiatric GWAS, compared with eQTLs. Via colocalization and TWAS, we prioritize biological mechanisms for ~60% of GWAS loci across five neuropsychiatric disorders, nearly two-fold that observed in the adult brain. Finally, we build a comprehensive set of developmentally regulated gene and isoform co-expression networks capturing unique genetic enrichments across disorders. Together, this work provides a comprehensive view of genetic regulation across human brain development as well as the stage-and cell type-informed mechanistic underpinnings of neuropsychiatric disorders., Competing Interests: M.J.G. and D.H.G. receive grant funding from Mitsubishi Tanabe Pharma America.
- Published
- 2023
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85. MicroPET evidence for a hypersensitive neuroinflammatory profile of gp120 mouse model of HIV.
- Author
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Young JW, Barback CV, Stolz LA, Groman SM, Vera DR, Hoh C, Kotta KK, Minassian A, Powell SB, and Brody AL
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- Animals, Brain diagnostic imaging, Brain metabolism, Humans, Inflammation diagnostic imaging, Inflammation metabolism, Mice, Positron-Emission Tomography methods, HIV Infections complications, HIV Infections diagnostic imaging, HIV Infections metabolism, Receptors, GABA metabolism
- Abstract
Despite increased survivability for people living with HIV (PLWH), HIV-related cognitive deficits persist. Determining biological mechanism(s) underlying abnormalities is critical to minimize the long-term impact of HIV. Positron emission tomography (PET) studies reveal that PLWH exhibit elevated neuroinflammation, potentially contributing to these problems. PLWH are hypersensitive to environmental insults that drive elevated inflammatory profiles. Gp120 is an envelope glycoprotein exposed on the surface of the HIV envelope which enables HIV entry into a cell contributing to HIV-related neurotoxicity. In vivo evidence for mice overexpressing gp120 (transgenic) mice exhibiting neuroinflammation remains unclear. Here, we conducted microPET imaging in gp120 transgenic and wildtype mice, using the radiotracer [(18)F]FEPPA (binds to the translocator protein expressed by activated microglial serving as a neuroinflammatory marker). Imaging was performed at baseline and 24 h after lipopolysaccharide (LPS; 5 mg/kg) treatment (endotoxin that triggers an immune response). Gp120 transgenic mice exhibited elevated [(18F)]FEPPA in response to LPS vs. wildtype mice throughout the brain including dorsal and ventral striata, hypothalamus, and hippocampus. Gp120 transgenic mice are hypersensitive to environmental inflammatory insults, consistent with PLWH, measurable in vivo. It remains to-be-determined whether this heightened sensitivity is connected to the behavioral abnormalities of these mice or sensitive to any treatments., (Copyright © 2022 Elsevier B.V. All rights reserved.)
- Published
- 2022
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86. Assessing CAR T-Cell Therapy Response Using Genome-Wide Sequencing of Cell-Free DNA in Patients With B-Cell Lymphomas.
- Author
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Goodman AM, Holden KA, Jeong AR, Kim L, Fitzgerald KD, Almasri E, McLennan G, Eisenberg M, Jahromi AH, Hoh C, Hurley M, Mulroney C, Tzachanis D, Ball ED, Jensen TJ, and Kurzrock R
- Subjects
- Antigens, CD19 genetics, Humans, Immunotherapy, Adoptive, Cell-Free Nucleic Acids, Lymphoma, B-Cell genetics, Receptors, Chimeric Antigen genetics
- Abstract
Methods that enable monitoring of therapeutic efficacy of autologous chimeric antigen receptor (CAR) T-cell therapy will be clinically useful. The aim of this study is to demonstrate the feasibility of blood-derived cell-free DNA (cfDNA) to predict CAR T-cell therapy response in patients with refractory B-cell lymphomas. Whole blood was collected before and throughout CAR T-cell therapy until day 154. Low-coverage (∼0.4×), genome-wide cfDNA sequencing, similar to that established for noninvasive prenatal testing, was performed. The genomic instability number (GIN) was used to quantify plasma copy number alteration level. Twelve patients were enrolled. Seven (58%) patients achieved a complete response (CR); 2 (25%), a partial response. Median progression-free survival was 99 days; median overall survival was not reached (median follow-up, 247 days). Altogether, 127 blood samples were analyzed (median, 10 samples/patient [range 8-13]). All 5 patients who remained in CR at the time of last measurement had GIN <170 (threshold). Two patients who attained CR, but later relapsed, and all but one patient who had best response other than CR had last GIN measurement of >170. In 5 of 6 patients with relapsed or progressive disease, increasing GIN was observed before the diagnosis by imaging. The abundance of CAR T-cell construct (absolute number of construct copies relative to the number of human genome equivalents) also showed a trend to correlate with outcome (day 10, P = .052). These data describe a proof-of-concept for the use of multiple liquid biopsy technologies to monitor therapeutic response in B-cell lymphoma patients receiving CAR T-cell therapy., (Copyright © 2021 The American Society for Transplantation and Cellular Therapy. Published by Elsevier Inc. All rights reserved.)
- Published
- 2022
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87. Metallofluorocarbon Nanoemulsion for Inflammatory Macrophage Detection via PET and MRI.
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Wang C, Leach BI, Lister D, Adams SR, Xu H, Hoh C, McConville P, Zhang J, Messer K, and Ahrens ET
- Subjects
- Animals, Mice, Nanoparticles chemistry, Nanostructures chemistry, Radioisotopes, Positron-Emission Tomography methods, Emulsions chemistry, Inflammation diagnostic imaging, Magnetic Resonance Imaging, Zirconium chemistry, Fluorocarbons chemistry, Macrophages
- Abstract
Inflammation is associated with a range of serious human conditions, including autoimmune and cardiovascular diseases and cancer. The ability to image active inflammatory processes greatly enhances our ability to diagnose and treat these diseases at an early stage. We describe molecular compositions enabling sensitive and precise imaging of inflammatory hotspots in vivo. Methods: A functionalized nanoemulsion with a fluorocarbon-encapsulated radiometal chelate (FERM) was developed to serve as a platform for multimodal imaging probe development. The
19 F-containing FERM nanoemulsion encapsulates89 Zr in the fluorous oil via a fluorinated hydroxamic acid chelate. Simple mixing of the radiometal with the preformed aqueous nanoemulsion before use yields FERM, a stable in vivo cell tracer, enabling whole-body89 Zr PET and19 F MRI after a single intravenous injection. Results: The FERM nanoemulsion was intrinsically taken up by phagocytic immune cells, particularly macrophages, with high specificity. FERM stability was demonstrated by a high correlation between the19 F and89 Zr content in the blood (correlation coefficient > 0.99). Image sensitivity at a low dose (37 kBq) was observed in a rodent model of acute infection. The versatility of FERM was further demonstrated in models of inflammatory bowel disease and 4T1 tumor. Conclusion: Multimodal detection using FERM yields robust whole-body lesion detection and leverages the strengths of combined PET and19 F MRI. The FERM nanoemulsion has scalable production and is potentially useful for precise diagnosis, stratification, and treatment monitoring of inflammatory diseases., (© 2021 by the Society of Nuclear Medicine and Molecular Imaging.)- Published
- 2021
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88. An in vitro study for the dosimetric and radiobiological validation of respiratory gating in conventional and hypofractionated radiotherapy of the lung: effect of dose, dose rate, and breathing pattern.
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Cerviño LI, Soultan D, Advani SJ, Cornell M, Yock A, Pettersson N, Song WY, Aguilera J, Murphy J, Hoh C, James C, Paravati A, Coope R, Gill B, and Moiseenko V
- Subjects
- A549 Cells, Humans, Lung Neoplasms physiopathology, Lung Neoplasms radiotherapy, Phantoms, Imaging, Radiometry, Radiotherapy Planning, Computer-Assisted, Lung Neoplasms pathology, Radiation Dose Hypofractionation, Radiobiology, Radiosurgery methods, Respiration
- Abstract
Stereotactic body radiotherapy (SBRT) of the lung has become a standard of care for early-stage inoperable non-small cell lung cancer (NSCLC). A common strategy to manage respiratory motion is gating, which inevitably results in an increase in treatment time, especially in irregularly-breathing patients. Flattening-filter free (FFF) beams allow for delivery of the treatment at a higher dose rate, therefore counteracting the lengthened treatment time due to frequent interruption of the beam during gated radiotherapy. In this study, we perform our in vitro evaluation of the dosimetric and radiobiological effect of gated lung SBRT with simultaneous integrated boost (SIB) using both flattened and FFF beams. A moving thorax-shaped phantom with inserts and applicators was used for simulation, planning, gated treatment delivery measurements and in vitro tests. The effects of gating window, dose rate, and breathing pattern were evaluated. Planned doses represented a typical conventional fractionation, 200 cGy per fraction with SIB to 240 cGy, flattened beam only, and SBRT, 800 cGy with SIB to 900 cGy, flattened and FFF beams. Ideal, as well as regular and irregular patient-specific breathing patterns with and without gating were used. A survival assay for lung adenocarcinoma A549 cell line was performed. Delivered dose was within 6% for locations planned to receive 200 and 800 cGy and within 4% for SIB locations. Time between first beam-on and last beam-off varied from approximately 1.5 min for conventional fractionation, 200/240 cGy, to 10.5 min for gated SBRT, 800/900 cGy doses, flattened beam and irregular breathing motion pattern. With FFF beams dose delivery time was shorter by a factor of 2-3, depending on the gating window and breathing pattern. We have found that, for the most part, survival depended on dose and not on dose rate, gating window, or breathing regularity.
- Published
- 2019
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89. NCCN Guidelines Insights: Thyroid Carcinoma, Version 2.2018.
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Haddad RI, Nasr C, Bischoff L, Busaidy NL, Byrd D, Callender G, Dickson P, Duh QY, Ehya H, Goldner W, Haymart M, Hoh C, Hunt JP, Iagaru A, Kandeel F, Kopp P, Lamonica DM, McIver B, Raeburn CD, Ridge JA, Ringel MD, Scheri RP, Shah JP, Sippel R, Smallridge RC, Sturgeon C, Wang TN, Wirth LJ, Wong RJ, Johnson-Chilla A, Hoffmann KG, and Gurski LA
- Subjects
- Antineoplastic Combined Chemotherapy Protocols standards, Antineoplastic Combined Chemotherapy Protocols therapeutic use, Biomarkers, Tumor analysis, Biomarkers, Tumor genetics, Biomarkers, Tumor metabolism, Carcinoma diagnosis, Carcinoma mortality, Carcinoma pathology, Clinical Trials as Topic, Humans, Image-Guided Biopsy methods, Image-Guided Biopsy standards, Neoplasm Staging, Prognosis, Protein Kinase Inhibitors standards, Protein Kinase Inhibitors therapeutic use, Proto-Oncogene Proteins B-raf antagonists & inhibitors, Proto-Oncogene Proteins B-raf genetics, Societies, Medical standards, Thyroid Gland diagnostic imaging, Thyroid Gland pathology, Thyroid Gland surgery, Thyroid Neoplasms diagnosis, Thyroid Neoplasms genetics, Thyroid Neoplasms pathology, Thyroidectomy methods, Thyroidectomy standards, Treatment Outcome, United States, Carcinoma therapy, Medical Oncology standards, Thyroid Neoplasms therapy
- Abstract
The NCCN Guidelines for Thyroid Carcinoma provide recommendations for the management of different types of thyroid carcinoma, including papillary, follicular, Hürthle cell, medullary, and anaplastic carcinomas. These NCCN Guidelines Insights summarize the panel discussion behind recent updates to the guidelines, including the expanding role of molecular testing for differentiated thyroid carcinoma, implications of the new pathologic diagnosis of noninvasive follicular thyroid neoplasm with papillary-like nuclear features, and the addition of a new targeted therapy option for BRAF V600E-mutated anaplastic thyroid carcinoma., (Copyright © 2018 by the National Comprehensive Cancer Network.)
- Published
- 2018
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90. Effect of overnight smoking abstinence on a marker for microglial activation: a [ 11 C]DAA1106 positron emission tomography study.
- Author
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Brody AL, Gehlbach D, Garcia LY, Enoki R, Hoh C, Vera D, Kotta KK, London ED, Okita K, Nurmi EL, Seaman LC, and Mandelkern MA
- Subjects
- Adult, Biomarkers metabolism, Brain diagnostic imaging, Female, Humans, Male, Middle Aged, Receptors, GABA metabolism, Smoking Cessation, Time Factors, Acetamides metabolism, Brain metabolism, Carbon Radioisotopes metabolism, Microglia metabolism, Phenyl Ethers metabolism, Positron-Emission Tomography methods, Smoking metabolism
- Abstract
Rationale: Microglia are the main immune cells in the central nervous system and participate in neuroinflammation. When activated, microglia express increased levels of the translocator protein 18 kDa (TSPO), thereby making TSPO availability a marker for neuroinflammation. Using positron emission tomography (PET) scanning, our group recently demonstrated that smokers in the satiated state had 16.8% less binding of the radiotracer [
11 C]DAA1106 (a radioligand for TSPO) in the brain than nonsmokers., Objectives: We sought to determine the effect of overnight smoking abstinence on [11 C]DAA1106 binding in the brain., Methods: Forty participants (22 smokers and 18 nonsmokers) completed the study (at one of two sites) and had usable data, which included images from a dynamic [11 C]DAA1106 PET scanning session (with smokers having been abstinent for 17.9 ± 2.3 h) and a blood sample for TSPO genotyping. Whole brain standardized uptake values (SUVs) were determined, and analysis of variance was performed, with group (overnight abstinent smoker vs. nonsmoker), site, and TSPO genotype as factors, thereby controlling for site and genotype., Results: Overnight abstinent smokers had lower whole brain SUVs (by 15.5 and 17.0% for the two study sites) than nonsmokers (ANCOVA, P = 0.004). The groups did not significantly differ in injected radiotracer dose or body weight, which were used to calculate SUV., Conclusions: These results in overnight abstinent smokers are similar to those in satiated smokers, indicating that chronic cigarette smoking leads to global impairment of microglial activation which persists into early abstinence. Other explanations for study results, such as smoking leading to reduced numbers of microglia or smokers having more rapid metabolism of the radiotracer than nonsmokers, are also possible.- Published
- 2018
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91. A novel 3D-printed phantom insert for 4D PET/CT imaging and simultaneous integrated boost radiotherapy.
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Cerviño L, Soultan D, Cornell M, Yock A, Pettersson N, Song WY, Aguilera J, Advani S, Murphy J, Hoh C, James C, Paravati A, Coope R, Gill B, and Moiseenko V
- Subjects
- Fluorodeoxyglucose F18, Image Processing, Computer-Assisted, Radiometry, Time Factors, Four-Dimensional Computed Tomography instrumentation, Phantoms, Imaging, Positron Emission Tomography Computed Tomography instrumentation, Printing, Three-Dimensional, Surgery, Computer-Assisted instrumentation
- Abstract
Purpose: To construct a 3D-printed phantom insert designed to mimic the variable PET tracer uptake seen in lung tumor volumes and a matching dosimetric insert to be used in simultaneous integrated boost (SIB) phantom studies, and to evaluate the design through end-to-end tests., Methods: A set of phantom inserts was designed and manufactured for a realistic representation of gated radiotherapy steps from 4D PET/CT scanning to dose delivery. A cylindrical phantom (φ80 × 120 mm) holds inserts for PET/CT scanning. The novel 3D printed insert dedicated to 4D PET/CT mimics high PET tracer uptake in the core and low uptake in the periphery. This insert is a variable density porous cylinder (φ44.5 × 70.0 mm), ABS-P430 thermoplastic, 3D printed by fused deposition modeling an inner (φ11 × 42 mm) cylindrical void. The square pores (1.8 × 1.8 mm
2 each) fill 50% of outer volume, resulting in a 2:1 PET tracer concentration ratio in the void volume with respect to porous volume. A matching cylindrical phantom insert is dedicated to validate gated radiotherapy. It contains eight peripheral holes and one central hole, matching the location of the porous part and the void part of the 3D printed insert, respectively. These holes accommodate adaptors for Farmer-type ion chamber and cells vials. End-to-end tests were designed for imaging, planning, and dose measurements., Results: End-to-end test were performed from 4D PET/CT scanning to transferring data to the planning system, target volume delineation, and dose measurements. 4D PET/CT scans were acquired of the phantom at different respiratory motion patterns and gating windows. A measured 2:1 18F-FDG concentration ratio between inner void and outer porous volume matched the 3D printed design. Measured dose in the dosimetric insert agreed well with planned dose on the imaging insert, within 3% for the static phantom and within 5% for most breathing patterns., Conclusions: The novel 3D printed phantom insert mimics variable PET tracer uptake typical of tumors. Obtained 4D PET/CT scans are suitable for segmentation and treatment planning and delivery in SIB gated treatments. Our experiments demonstrate the feasibility of this set of phantom inserts serving as end-to-end quality-assurance phantoms of SIB radiotherapy., (© 2017 American Association of Physicists in Medicine.)- Published
- 2017
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92. Anaplastic Thyroid Carcinoma, Version 2.2015.
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Haddad RI, Lydiatt WM, Ball DW, Busaidy NL, Byrd D, Callender G, Dickson P, Duh QY, Ehya H, Haymart M, Hoh C, Hunt JP, Iagaru A, Kandeel F, Kopp P, Lamonica DM, McCaffrey JC, Moley JF, Parks L, Raeburn CD, Ridge JA, Ringel MD, Scheri RP, Shah JP, Smallridge RC, Sturgeon C, Wang TN, Wirth LJ, Hoffmann KG, and Hughes M
- Subjects
- Antineoplastic Combined Chemotherapy Protocols therapeutic use, Carboplatin administration & dosage, Docetaxel, Doxorubicin administration & dosage, Humans, Paclitaxel administration & dosage, Radiotherapy, Intensity-Modulated, Taxoids administration & dosage, Thyroid Carcinoma, Anaplastic secondary, Thyroid Neoplasms pathology, Thyroidectomy, Thyroid Carcinoma, Anaplastic diagnosis, Thyroid Carcinoma, Anaplastic therapy, Thyroid Neoplasms diagnosis, Thyroid Neoplasms therapy
- Abstract
This selection from the NCCN Clinical Practice Guidelines in Oncology (NCCN Guidelines) for Thyroid Carcinoma focuses on anaplastic carcinoma because substantial changes were made to the systemic therapy recommendations for the 2015 update. Dosages and frequency of administration are now provided, docetaxel/doxorubicin regimens were added, and single-agent cisplatin was deleted because it is not recommended for patients with advanced or metastatic anaplastic thyroid cancer., (Copyright © 2015 by the National Comprehensive Cancer Network.)
- Published
- 2015
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93. Colonic inflammation in a samoan immigrant with gastric lymphoma shown by positron emission tomography.
- Author
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Burt A and Hoh C
- Subjects
- Animals, Antibodies, Helminth blood, Colon diagnostic imaging, Colon parasitology, Emigrants and Immigrants, Humans, Inflammation, Lymphoma, Large B-Cell, Diffuse diagnostic imaging, Lymphoma, Non-Hodgkin diagnostic imaging, Male, Middle Aged, Positron-Emission Tomography methods, Samoa ethnology, Stomach Neoplasms diagnostic imaging, Strongyloides stercoralis immunology, Strongyloidiasis ethnology, Strongyloidiasis pathology, Colon pathology, Lymphoma, Large B-Cell, Diffuse complications, Lymphoma, Non-Hodgkin complications, Stomach Neoplasms complications, Strongyloidiasis diagnosis
- Published
- 2015
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94. Thyroid carcinoma, version 2.2014.
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Tuttle RM, Haddad RI, Ball DW, Byrd D, Dickson P, Duh QY, Ehya H, Haymart M, Hoh C, Hunt JP, Iagaru A, Kandeel F, Kopp P, Lamonica DM, Lydiatt WM, McCaffrey J, Moley JF, Parks L, Raeburn CD, Ridge JA, Ringel MD, Scheri RP, Shah JP, Sherman SI, Sturgeon C, Waguespack SG, Wang TN, Wirth LJ, Hoffmann KG, and Hughes M
- Subjects
- Adenocarcinoma pathology, Anilides therapeutic use, Carcinoma, Neuroendocrine, Guidelines as Topic, Humans, Neoplasm Metastasis, Niacinamide analogs & derivatives, Niacinamide therapeutic use, Phenylurea Compounds therapeutic use, Pyridines therapeutic use, Sorafenib, Thyroid Neoplasms pathology, Adenocarcinoma drug therapy, Protein Kinase Inhibitors therapeutic use, Thyroid Neoplasms drug therapy
- Abstract
These NCCN Guidelines Insights focus on some of the major updates to the 2014 NCCN Guidelines for Thyroid Carcinoma. Kinase inhibitor therapy may be used to treat thyroid carcinoma that is symptomatic and/or progressive and not amenable to treatment with radioactive iodine. Sorafenib may be considered for select patients with metastatic differentiated thyroid carcinoma, whereas vandetanib or cabozantinib may be recommended for select patients with metastatic medullary thyroid carcinoma. Other kinase inhibitors may be considered for select patients with either type of thyroid carcinoma. A new section on "Principles of Kinase Inhibitor Therapy in Advanced Thyroid Cancer" was added to the NCCN Guidelines to assist with using these novel targeted agents., (Copyright © 2014 by the National Comprehensive Cancer Network.)
- Published
- 2014
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95. An observational study of circulating tumor cells and (18)F-FDG PET uptake in patients with treatment-naive non-small cell lung cancer.
- Author
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Nair VS, Keu KV, Luttgen MS, Kolatkar A, Vasanawala M, Kuschner W, Bethel K, Iagaru AH, Hoh C, Shrager JB, Loo BW Jr, Bazhenova L, Nieva J, Gambhir SS, and Kuhn P
- Subjects
- Aged, Aged, 80 and over, Antigens, Surface metabolism, Carcinoma, Non-Small-Cell Lung pathology, Cross-Sectional Studies, Female, Humans, Immunophenotyping, Lung Neoplasms pathology, Male, Middle Aged, Neoplasm Staging, Neoplastic Cells, Circulating metabolism, Retrospective Studies, Tumor Burden, Carcinoma, Non-Small-Cell Lung diagnosis, Fluorodeoxyglucose F18, Lung Neoplasms diagnosis, Neoplastic Cells, Circulating pathology, Positron-Emission Tomography, Tomography, X-Ray Computed
- Abstract
Introduction: We investigated the relationship of circulating tumor cells (CTCs) in non-small cell lung cancer (NSCLC) with tumor glucose metabolism as defined by (18)F-fluorodeoxyglucose (FDG) uptake since both have been associated with patient prognosis., Materials & Methods: We performed a retrospective screen of patients at four medical centers who underwent FDG PET-CT imaging and phlebotomy prior to a therapeutic intervention for NSCLC. We used an Epithelial Cell Adhesion Molecule (EpCAM) independent fluid biopsy based on cell morphology for CTC detection and enumeration (defined here as High Definition CTCs or "HD-CTCs"). We then correlated HD-CTCs with quantitative FDG uptake image data calibrated across centers in a cross-sectional analysis., Results: We assessed seventy-one NSCLC patients whose median tumor size was 2.8 cm (interquartile range, IQR, 2.0-3.6) and median maximum standardized uptake value (SUVmax) was 7.2 (IQR 3.7-15.5). More than 2 HD-CTCs were detected in 63% of patients, whether across all stages (45 of 71) or in stage I disease (27 of 43). HD-CTCs were weakly correlated with partial volume corrected tumor SUVmax (r = 0.27, p-value = 0.03) and not correlated with tumor diameter (r = 0.07; p-value = 0.60). For a given partial volume corrected SUVmax or tumor diameter there was a wide range of detected HD-CTCs in circulation for both early and late stage disease., Conclusions: CTCs are detected frequently in early-stage NSCLC using a non-EpCAM mediated approach with a wide range noted for a given level of FDG uptake or tumor size. Integrating potentially complementary biomarkers like these with traditional patient data may eventually enhance our understanding of clinical, in vivo tumor biology in the early stages of this deadly disease.
- Published
- 2013
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96. Serotonin transporter binding after recovery from bulimia nervosa.
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Pichika R, Buchsbaum MS, Bailer U, Hoh C, Decastro A, Buchsbaum BR, and Kaye W
- Subjects
- Adult, Brain diagnostic imaging, Bulimia Nervosa diagnostic imaging, Female, Humans, Radionuclide Imaging, Brain metabolism, Bulimia Nervosa metabolism, Serotonin Plasma Membrane Transport Proteins metabolism
- Abstract
Objective: Physiological and pharmacological studies indicate that altered brain serotonin (5-HT) activity could contribute to a susceptibility to develop appetitive and behavioral alterations that are characteristic of bulimia nervosa (BN)., Method: Eight individuals recovered from BN (REC BN) and eight healthy control women were scanned with [11C]DASB and positron emission tomography imaging of the 5-HT transporter (5-HTT). Logan graphical analysis was applied, and parametric binding potential (BP(nondisplaceable (ND)) ) images were generated. Voxel-by-voxel t-tests and a region of interest (ROI) analysis were conducted., Results: REC BN had significantly lower [11C]DASB BP(ND) in midbrain, superior and inferior cingulate and significantly higher [11C]DASB BP(ND) in anterior cingulate and superior temporal gyrus in the voxel-based analysis. ROI analysis indicated lower [11C]DASB BP(ND) in midbrain (p = .07), containing the dorsal raphe, in REC BN, consistent with our earlier studies., Discussion: These preliminary findings of a small-scale study confirm and extend previous data suggesting that ill and recovered BN have altered 5-HTT measures, which potentially contribute to BN symptomatology and/or differential responses to medication., (Copyright © 2011 Wiley Periodicals, Inc.)
- Published
- 2012
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97. Intraocular pharmacokinetics of a crystalline lipid prodrug, octadecyloxyethyl-cyclic-cidofovir, for cytomegalovirus retinitis.
- Author
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Cheng L, Beadle JR, Tammewar A, Hostetler KY, Hoh C, and Freeman WR
- Subjects
- Animals, Antiviral Agents toxicity, Autoradiography, Cidofovir, Cytosine pharmacokinetics, Cytosine pharmacology, Cytosine toxicity, Intravitreal Injections, Organophosphonates pharmacokinetics, Organophosphonates toxicity, Rabbits, Antiviral Agents pharmacokinetics, Cytomegalovirus Retinitis drug therapy, Cytosine analogs & derivatives, Eye metabolism, Organophosphonates pharmacology, Prodrugs pharmacokinetics
- Abstract
Purpose: To evaluate the intraocular pharmacokinetics of octadecyloxyethyl-cyclic-cidofovir (ODE-cCDV) after intravitreal injection into rabbit eyes., Methods: Twenty-seven New Zealand red rabbits (27 eyes) received intravitreal injections of (14)C-labeled ODE-cCDV (100 μg drug suspended in 5% dextrose), and ocular tissues were collected from 3 rabbits at each predetermined time point (1 h, 1 day, 3 days, 1 week, 2 weeks, 3 weeks, 5 weeks, and 9 weeks) after the injection. The eye globes were enucleated, and the vitreous, retina, and choroids were separated and harvested into pre-weighed scintillation vials. Levels of ODE-cCDV were measured by counting in a liquid scintillation counter, and pharmacokinetic (PK) parameters were determined. In addition, 3 eyes of 3 animals were used for autoradiography study at day 1, week 3, and week 6., Results: ODE-cCDV in vitreous as a whole followed a 2-phase first-order elimination, whereas ODE-cCDV in retina and choroid manifested a nearly steady state during the first 3 weeks and then followed a first-order elimination with the apparent elimination half-life of 10.1 and 7.2 days. For vitreous, apparent elimination half-life was 25 days. However, the drug mean residence time was much longer in retina (17.6 days) and choroid (19.6 days) than that in the vitreous (11.6 days). The drug exposure to the retina [area under the curve (AUC) = 1120837.1 ng · day/mL] was greater than the exposure to the vitreous (AUC = 958645.8 ng · day/mL) and the choroid (AUC = 415407.47)., Conclusion: A crystalline lipid prodrug, ODE-cCDV, has longer vitreous half-life than that in other ocular tissues due to its solid drug depot formation in vitreous. Over time, dissolved free ODE-cCDV from drug depot feeds and accumulates in the retina.
- Published
- 2011
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98. Assessment of metabolic phenotypes in patients with non-ischemic dilated cardiomyopathy undergoing cardiac resynchronization therapy.
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Obrzut S, Tiongson J, Jamshidi N, Phan HM, Hoh C, and Birgersdotter-Green U
- Subjects
- Adenosine Triphosphate metabolism, Adult, Aged, Amino Acids blood, Biomarkers blood, Blood Glucose metabolism, Cardiomyopathy, Dilated blood, Cardiomyopathy, Dilated physiopathology, Fatty Acids, Nonesterified blood, Female, Heart Failure blood, Heart Failure physiopathology, Humans, Lactic Acid blood, Male, Middle Aged, Mitochondria, Heart metabolism, Myocardial Contraction, Oxygen blood, Phenotype, Prospective Studies, Proteomics, Pyruvic Acid blood, Stroke Volume, Time Factors, Treatment Failure, Cardiac Resynchronization Therapy, Cardiomyopathy, Dilated therapy, Energy Metabolism, Heart Failure therapy, Myocardium metabolism, Oxygen Consumption, Ventricular Function, Left
- Abstract
Studies of myocardial metabolism have reported that contractile performance at a given myocardial oxygen consumption (MVO2) can be lower when the heart is oxidizing fatty acids rather than glucose or lactate. The objective of this study is to assess the prognostic value of myocardial metabolic phenotypes in identifying non-responders among non-ischemic dilated cardiomyopathy (NIDCM) patients undergoing cardiac resynchronization therapy (CRT). Arterial and coronary sinus plasma concentrations of oxygen, glucose, lactate, pyruvate, free fatty acids (FFA), and 22 amino acids were obtained from 19 male and 2 female patients (mean age 56 ± 16) with NIDCM undergoing CRT. Metabolite fluxes/MVO2 and extraction fractions were calculated. Flux balance analysis (FBA) was performed with MetaFluxNet 1.8 on a metabolic network of the cardiac mitochondria (189 reactions, 230 metabolites) reconstructed from mitochondrial proteomic data (615 proteins) from human heart tissue. Non-responders based on left ventricular ejection fraction (LVEF) demonstrated a greater mean FFA extraction fraction (35% ± 17%) than responders [18 ± 10%, p = 0.0098, area under the estimated ROC curve (AUC) was 0.8238, S.E. 0.1115]. Calculated adenosine triphosphate (ATP)/MVO2 using FBA correlated with change in New York Heart Association (NYHA) class (rho = 0.63, p = 0.0298; AUC = 0.8381, S.E. 0.1316). Non-responders based on both LVEF and NYHA demonstrated a greater mean FFA uptake/MVO2 (0.115 ± 0.112) than responders (0.034 ± 0.030, p = 0.0171; AUC = 0.8593, S.E. 0.0965). Myocardial FFA flux and calculated maximal ATP synthesis flux using FBA may be helpful as biomarkers in identifying non-responders among NIDCM patients undergoing CRT.
- Published
- 2010
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99. B-cell activating factor and v-Myc myelocytomatosis viral oncogene homolog (c-Myc) influence progression of chronic lymphocytic leukemia.
- Author
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Zhang W, Kater AP, Widhopf GF 2nd, Chuang HY, Enzler T, James DF, Poustovoitov M, Tseng PH, Janz S, Hoh C, Herschman H, Karin M, and Kipps TJ
- Subjects
- Animals, B-Cell Activating Factor genetics, B-Cell Activating Factor immunology, B-Lymphocytes immunology, Female, Gene Expression Regulation, Leukemic genetics, Gene Expression Regulation, Leukemic immunology, Humans, Immunologic Memory, Leukemia, Lymphocytic, Chronic, B-Cell genetics, Leukemia, Lymphocytic, Chronic, B-Cell immunology, Male, Mice, Mice, Transgenic, NF-kappa B genetics, NF-kappa B immunology, NF-kappa B metabolism, Proto-Oncogene Proteins c-myc genetics, Proto-Oncogene Proteins c-myc immunology, B-Cell Activating Factor metabolism, B-Lymphocytes metabolism, Genes, myc, Leukemia, Lymphocytic, Chronic, B-Cell metabolism, Proto-Oncogene Proteins c-myc metabolism
- Abstract
Mice bearing a v-Myc myelocytomatosis viral oncogene homolog (c-Myc) transgene controlled by an Ig-alpha heavy-chain enhancer (iMyc(Cα) mice) rarely develop lymphomas but instead have increased rates of memory B-cell turnover and impaired antibody responses to antigen. We found that male progeny of iMyc(Cα) mice mated with mice transgenic (Tg) for CD257 (B-cell activating factor, BAFF) developed CD5(+) B-cell leukemia resembling human chronic lymphocytic leukemia (CLL), which also displays a male gender bias. Surprisingly, leukemic cells of Myc/Baff Tg mice expressed higher levels of c-Myc than did B cells of iMyc(Cα) mice. We found that CLL cells of many patients with progressive disease also expressed high amounts of c-MYC, particularly CLL cells whose survival depends on nurse-like cells (NLC), which express high-levels of BAFF. We find that BAFF could enhance CLL-cell expression of c-MYC via activation the canonical IκB kinase (IKK)/NF-κB pathway. Inhibition of the IKK/NF-κB pathway in mouse or human leukemia cells blocked the capacity of BAFF to induce c-MYC or promote leukemia-cell survival and significantly impaired disease progression in Myc/Baff Tg mice. This study reveals an important relationship between BAFF and c-MYC in CLL which may affect disease development and progression, and suggests that inhibitors of the canonical NF-κB pathway may be effective in treatment of patients with this disease.
- Published
- 2010
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100. Enhancing magnetic resonance imaging tumor detection with fluorescence intensity and lifetime imaging.
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Erten A, Hall D, Hoh C, Tran Cao HS, Kaushal S, Esener S, Hoffman RM, Bouvet M, Chen J, Kesari S, and Makale M
- Subjects
- Animals, Mice, Mice, Nude, Reproducibility of Results, Sensitivity and Specificity, Image Enhancement methods, Magnetic Resonance Imaging methods, Microscopy, Fluorescence methods, Neoplasms, Experimental diagnosis, Subtraction Technique
- Abstract
Early detection is important for many solid cancers but the images provided by ultrasound, magnetic resonance imaging (MRI), and computed tomography applied alone or together, are often not sufficient for decisive early screening ∕ diagnosis. We demonstrate that MRI augmented with fluorescence intensity (FI) substantially improves detection. Early stage murine pancreatic tumors that could not be identified by blinded, skilled observers using MRI alone, were easily identified with MRI along with FI images acquired with photomultiplier tube detection and offset laser scanning. Moreover, we show that fluorescence lifetime (FLT) imaging enables positive identification of the labeling fluorophore and discriminates it from surrounding tissue autofluorescence. Our data suggest combined-modality imaging with MRI, FI, and FLT can be used to screen and diagnose early tumors.
- Published
- 2010
- Full Text
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