51. Identification and characterization of novel microRNAs for fruit development and quality in hot pepper (Capsicum annuum L.)
- Author
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Zhang Zhuqing, Li Xuefeng, Zhoubin Liu, Zou Xuexiao, Yuhua Liu, Junheng Lv, Ma Yanqing, Linyu Kang, Lijun Ou, Zhou Shudong, Wei Ge, Yuping Zhang, Dai Xiongze, Bozhi Yang, Chen Wenchao, and Yang Sha
- Subjects
0106 biological sciences ,0301 basic medicine ,Small RNA ,Computational biology ,Biology ,Nucleotide sugar ,01 natural sciences ,Deep sequencing ,03 medical and health sciences ,chemistry.chemical_compound ,Gene Expression Regulation, Plant ,microRNA ,Pepper ,Genetics ,KEGG ,Cloning, Molecular ,Gene ,business.industry ,Sequence Analysis, RNA ,Gene Expression Profiling ,food and beverages ,Gene Expression Regulation, Developmental ,High-Throughput Nucleotide Sequencing ,Ripening ,General Medicine ,Biotechnology ,MicroRNAs ,030104 developmental biology ,chemistry ,RNA, Plant ,Fruit ,business ,Capsicum ,Transcriptome ,010606 plant biology & botany - Abstract
MicroRNAs (miRNAs) are non-coding small RNAs which play an important regulatory role in various biological processes. Previous studies have reported that miRNAs are involved in fruit development in model plants. However, the miRNAs related to fruit development and quality in hot pepper (Capsicum annuum L.) remains unknown. In this study, small RNA populations from different fruit ripening stages and different varieties were compared using next-generation sequencing technology. Totally, 59 known miRNAs and 310 novel miRNAs were identified from four libraries using miRDeep2 software. For these novel miRNAs, 656 targets were predicted and 402 of them were annotated. GO analysis and KEGG pathways suggested that some of the predicted miRNAs targeted genes involved in starch sucrose metabolism and amino sugar as well as nucleotide sugar metabolism. Quantitative RT-PCR validated the contrasting expression patterns between several miRNAs and their target genes. These results will provide an important foundation for future studies on the regulation of miRNAs involved in fruit development and quality.
- Published
- 2016