84 results on '"Malfatti, Francesca"'
Search Results
52. Citizen science and crowdsourcing in the field of marine scientific research – the MaDCrow project
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Diviacco, Paolo, primary, Nadali, Antonio, additional, Malfatti, Francesca, additional, Iurcev, Massimiliano, additional, Carbajales, Rodrigo, additional, Busato, Alessandro, additional, Pavan, Alessandro, additional, Grio, Lorenzo, additional, and Nolich, Massimiliano, additional
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- 2020
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53. Advancing Citizen Science for Coastal and Ocean Research
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Garcia-Soto, Carlos, primary, van der Meeren, Gro I., additional, Delany, Jane, additional, Domegan, Christine, additional, Dubsky, Karin, additional, Gorsky, Gabriel, additional, von Juterzenka, Karen, additional, Malfatti, Francesca, additional, Mannaerts, Gerald, additional, McHugh, Patricia, additional, Seys, Jan, additional, Weslawski, Jan Marcin, additional, Zielinski, Oliver, additional, Busch, Julia A., additional, Monestiez, Pascal, additional, and Fauville, Geraldine, additional
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- 2019
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54. Navigating the Future V: Marine Science for a Sustainable Future
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Board, European Marine, primary, Boero, Ferdinando, additional, Cummins, Valerie, additional, Gault, Jeremy, additional, Huse, Geir, additional, Philippart, Catharina, additional, Schneider, Ralph, additional, Besiktepe, Sukru, additional, Boeuf, Gilles, additional, Coll, Marta, additional, Garcia-Soto, Carlos, additional, Horsburgh, Kevin, additional, Kopp, Heidrun, additional, Malfatti, Francesca, additional, Mariani, Patrizio, additional, Matz-Lück, Nele, additional, Mees, Jan, additional, Pinheiro, Luis Menezes, additional, Lacroix, Denis, additional, Le Tissier, Martin, additional, Paterson, David M., additional, Schernewski, Gerald, additional, Thébaud, Olivier, additional, Vandegehuchte, Michiel, additional, Villasante, Sebastian, additional, Visbeck, Martin, additional, and Węsławski, Jan Marcin, additional
- Published
- 2019
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55. Marine gas-phase sulfur emissions during an induced phytoplankton bloom.
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Kilgour, Delaney B., Novak, Gordon A., Sauer, Jon S., Moore, Alexia N., Dinasquet, Julie, Amiri, Sarah, Franklin, Emily B., Mayer, Kathryn, Winter, Margaux, Morris, Clare K., Price, Tyler, Malfatti, Francesca, Crocker, Daniel R., Lee, Christopher, Cappa, Christopher D., Goldstein, Allen, Prather, Kimberly A., and Bertram, Timothy H.
- Abstract
The oxidation of dimethyl sulfide (DMS; CH
3 SCH3 ), emitted from the surface ocean, contributes to the formation of Aitken mode particles and their growth to cloud condensation nuclei (CCN) sizes in remote marine environments. It is not clear whether other, less commonly measured marine-derived, sulfur-containing gases share similar dynamics to DMS and contribute to secondary marine aerosol formation. Here, we present measurements of gas-phase volatile organosulfur molecules taken with a Vocus proton transfer reaction high resolution time-of-flight mass spectrometer during a mesocosm phytoplankton bloom experiment using coastal seawater. We show that DMS, methanethiol (MeSH; CH3 SH), and benzothiazole (C7 H5 NS) account for on average over 90% of total gas-phase sulfur emissions, with non-DMS sulfur sources representing 36.8 ± 7.7% of sulfur emissions during the first nine days of the experiment in the pre-bloom phase prior to major biological growth, before declining to 14.5 ± 6.0% in the latter half of the experiment when DMS dominates during the bloom and decay phases. The molar ratio of DMS to MeSH during the pre-bloom phase (DMS:MeSH = 4.60 ± 0.93) was consistent with the range of previously calculated ambient DMS to MeSH sea-to-air flux ratios. As the experiment progressed, the DMS to MeSH emission ratio increased significantly, reaching 31.8 ± 18.7 during the bloom and decay. Measurements of dimethylsulfoniopropionate (DMSP), heterotrophic bacteria, and enzyme activity in the seawater suggest the DMS:MeSH ratio is a sensitive indicator of the bacterial sulfur demand and the composition and magnitude of available sulfur sources in seawater. The evolving DMS:MeSH ratio and the emission of a new aerosol precursor gas, benzothiazole, have important implications for secondary sulfate formation pathways in coastal marine environments. [ABSTRACT FROM AUTHOR]- Published
- 2021
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56. Advancing Citizen Science for Coastal and Ocean Research
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Garcia-Soto, Carlos, van der Meeren, Gro I., Delany, Jane, Domegan, Christine, Dubsky, Karin, Gorsky, Gabriel, von Juterzenka, Karen, Malfatti, Francesca, Mannaerts, Gerald, McHugh, Patricia, Seys, Jan, Weslawski, Jan Marcin, Zielinski, Oliver, Busch, Julia A., Monestiez, Pascal, and Fauville, Geraldine
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Citizen Science ,Participation ,Sustainable Development Goals ,Stewardship ,Marine Science ,Ocean Literacy ,Environment - Abstract
In Citizen Science, members of the general public collaborate with scientists to generate and use data relating to the natural world. For the many fields of marine research, this is a particularly powerful approach which should not be overlooked. The sheer scale of coastal and ocean environments mean that it would take several lifetimes for scientists to study them alone. By collaborating with citizens, a much greater number of people can be mobilized to gather a wealth of data and develop new scientific knowledge and understanding. The variety of data types which are amenable to Citizen Science, as outlined in the position paper, are great, meaning that there could be a project to suit everyone. Citizen Science can also enable participants to improve their Ocean Literacy, gain new skills and experiences, and can also empower them to participate in the process of delivering future marine policy. Now, more than ever, marine science research is needed to understand the impacts of a world undergoing change. The rise of Marine Citizen Science to help address this need is therefore timely. This paper highlights opportunities, challenges and best practice in Marine Citizen Science, and sets out a list of high-level strategic recommendations for the future development of Marine Citizen Science in Europe. It presents examples of existing Marine Citizen Science initiatives in Europe to illustrate good practice. Common concerns such as data quality and maintaining engagement are discussed, as are future opportunities such as increased use of technology and potential role of Marine Citizen Science in informing marine policy and conservation. The paper closes with a list of high-level strategic recommendations for the future development of Marine Citizen Science in Europe.
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- 2017
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57. Detection of Active Microbial Enzymes in Nascent Sea Spray Aerosol: Implications for Atmospheric Chemistry and Climate
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Malfatti, Francesca, primary, Lee, Christopher, additional, Tinta, Tinkara, additional, Pendergraft, Matthew A., additional, Celussi, Mauro, additional, Zhou, Yanyan, additional, Sultana, Camille M., additional, Rotter, Ana, additional, Axson, Jessica L., additional, Collins, Douglas B., additional, Santander, Mitchell V., additional, Anides Morales, Alma L., additional, Aluwihare, Lihini I., additional, Riemer, Nicole, additional, Grassian, Vicki H., additional, Azam, Farooq, additional, and Prather, Kimberly A., additional
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- 2019
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58. A Conceptual Framework for Developing the Next Generation of Marine OBservatories (MOBs) for Science and Society
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Crise, Alessandro, primary, Ribera d’Alcalà, Maurizio, additional, Mariani, Patrizio, additional, Petihakis, George, additional, Robidart, Julie, additional, Iudicone, Daniele, additional, Bachmayer, Ralf, additional, and Malfatti, Francesca, additional
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- 2018
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59. A Conceptual Framework for Developing the Next Generation of Marine OBservatories (MOBs) for Science and Society
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Crise, Alessandro, Ribera d’Alcalà, Maurizio, Mariani, Patrizio, Petihakis, George, Robidart, Julie, Iudicone, Daniele, Bachmayer, Ralf, Malfatti, Francesca, Crise, Alessandro, Ribera d’Alcalà, Maurizio, Mariani, Patrizio, Petihakis, George, Robidart, Julie, Iudicone, Daniele, Bachmayer, Ralf, and Malfatti, Francesca
- Abstract
In the field of ocean observing, the term of “observatory” is often used without a unique meaning. A clear and unified definition of observatory is needed in order to facilitate the communication in a multidisciplinary community, to capitalize on future technological innovations and to support the observatory design based on societal needs. In this paper, we present a general framework to define the next generation Marine OBservatory (MOB), its capabilities and functionalities in an operational context. The MOB consists of four interconnected components or “gears” (observation infrastructure, cyberinfrastructure, support capacity, and knowledge generation engine) that are constantly and adaptively interacting with each other. Therefore, a MOB is a complex infrastructure focused on a specific geographic area with the primary scope to generate knowledge via data synthesis and thereby addressing scientific, societal, or economic challenges. Long-term sustainability is a key MOB feature that should be guaranteed through an appropriate governance. MOBs should be open to innovations and good practices to reduce operational costs and to allow their development in quality and quantity. A deeper biological understanding of the marine ecosystem should be reached with the proliferation of MOBs, thus contributing to effective conservation of ecosystems and management of human activities in the oceans. We provide an actionable model for the upgrade and development of sustained marine observatories producing knowledge to support science-based economic and societal decisions.
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- 2018
60. Antarctic phytoplankton communities’ composition determines the carbon metabolism of free-living prokariotes while sinking to the ocean interior
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Celussi, Mauro, Malfatti, Francesca, Franzo, Annalisa, Cerino, Federica, Baricevic, Ana, Smodlaka Tankovic, Mirta, Relitti, Federica, Bazzaro, Matteo, Del Negro, Paola, Gligora Udovič, Marija, Orlić, Sandi, and Šolić, Mladen
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fungi ,Prokaryotes ,Ross Sea ,Phytodetritus ,C production - Abstract
The Ross Sea is one of the most productive areas in the Southern Ocean, and is characterized by a pronounced export of particulate organic carbon to the mesopelagic (up to 50% of surface primary production). This organic carbon downward flux is deeply regulated by its interactions with prokaryotic communities within the entire water column. During austral summer 2017, we performed four microcosm experiments by providing freshly produced algal detritus to free-living prokaryotic communities (
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- 2017
61. Corrigendum to “Ocean acidification effect on prokaryotic metabolism tested in two diverse trophic regimes in the mediterranean sea” [Estuar. Coast shelf sci. 186 (2017) 125–138]
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Celussi, Mauro, primary, Malfatti, Francesca, additional, Annalisa, Franzo, additional, Gazeau, Frédéric, additional, Giannakourou, Antonia, additional, Pitta, Paraskevi, additional, Tsiola, Anastasia, additional, and Del Negro, Paola, additional
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- 2018
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62. Uptake-release dynamics of the inorganic and organic carbon pool mediated by planktonic prokaryotes in the deep Mediterranean Sea
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Celussi, Mauro, primary, Malfatti, Francesca, additional, Ziveri, Patrizia, additional, Giani, Michele, additional, and Del Negro, Paola, additional
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- 2017
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63. A Dynamic Link between Ice Nucleating Particles Released in Nascent Sea Spray Aerosol and Oceanic Biological Activity during Two Mesocosm Experiments
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McCluskey, Christina S., primary, Hill, Thomas C. J., primary, Malfatti, Francesca, primary, Sultana, Camille M., primary, Lee, Christopher, primary, Santander, Mitchell V., primary, Beall, Charlotte M., primary, Moore, Kathryn A., primary, Cornwell, Gavin C., primary, Collins, Douglas B., primary, Prather, Kimberly A., primary, Jayarathne, Thilina, primary, Stone, Elizabeth A., primary, Azam, Farooq, primary, Kreidenweis, Sonia M., primary, and DeMott, Paul J., primary
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- 2017
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64. Enrichment of Saccharides and Divalent Cations in Sea Spray Aerosol During Two Phytoplankton Blooms
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Jayarathne, Thilina, Sultana, Camille M., Lee, Christopher, Malfatti, Francesca, Cox, Joshua L., Pendergraft, Matthew A., Moore, Kathryn A., Azam, Farooq, Tivanski, Alexei V., Cappa, Christopher D., Bertram, Timothy H., Grassian, Vicki H., Prather, Kimberly A., Stone, Elizabeth A., Jayarathne, Thilina, Sultana, Camille M., Lee, Christopher, Malfatti, Francesca, Cox, Joshua L., Pendergraft, Matthew A., Moore, Kathryn A., Azam, Farooq, Tivanski, Alexei V., Cappa, Christopher D., Bertram, Timothy H., Grassian, Vicki H., Prather, Kimberly A., and Stone, Elizabeth A.
- Abstract
Sea spray aerosol (SSA) is a globally important source of particulate matter. A mesocosm study was performed to determine the relative enrichment of saccharides and inorganic ions in nascent fine (PM2.5) and coarse (PM10–2.5) SSA and the sea surface microlayer (SSML) relative to bulk seawater. Saccharides comprise a significant fraction of organic matter in fine and coarse SSA (11 and 27%, respectively). Relative to sodium, individual saccharides were enriched 14–1314-fold in fine SSA, 3–138-fold in coarse SSA, but only up to 1.0–16.2-fold in SSML. Enrichments in SSML were attributed to rising bubbles that scavenge surface-active species from seawater, while further enrichment in fine SSA likely derives from bubble films. Mean enrichment factors for major ions demonstrated significant enrichment in fine SSA for potassium (1.3), magnesium (1.4), and calcium (1.7), likely because of their interactions with organic matter. Consequently, fine SSA develops a salt profile significantly different from that of seawater. Maximal enrichments of saccharides and ions coincided with the second of two phytoplankton blooms, signifying the influence of ocean biology on selective mass transfer across the ocean–air interface.
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- 2016
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65. Enrichment of Saccharides and Divalent Cations in Sea Spray Aerosol During Two Phytoplankton Blooms
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Jayarathne, Thilina, primary, Sultana, Camille M., additional, Lee, Christopher, additional, Malfatti, Francesca, additional, Cox, Joshua L., additional, Pendergraft, Matthew A., additional, Moore, Kathryn A., additional, Azam, Farooq, additional, Tivanski, Alexei V., additional, Cappa, Christopher D., additional, Bertram, Timothy H., additional, Grassian, Vicki H., additional, Prather, Kimberly A., additional, and Stone, Elizabeth A., additional
- Published
- 2016
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66. The ocean sampling day consortium
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Kopf, Anna, Bicak, Mesude, Kottmann, Renzo, Schnetzer, Julia, Kostadinov, Ivaylo, Lehmann, Katja, Fernandez-guerra, Antonio, Jeanthon, Christian, Rahav, Eyal, Ullrich, Matthias, Wichels, Antje, Gerdts, Gunnar, Polymenakou, Paraskevi, Kotoulas, Giorgos, Siam, Rania, Abdallah, Rehab Z., Sonnenschein, Eva C., Cariou, Thierry, O'Gara, Fergal, Jackson, Stephen, Orlic, Sandi, Steinke, Michael, Busch, Julia, Duarte, Bernardo, Cacador, Isabel, Canning-clode, Joao, Bobrova, Oleksandra, Marteinsson, Viggo, Reynisson, Eyjolfur, Loureiro, Clara Magalhaes, Luna, Gian Marco, Quero, Grazia Marina, Loescher, Carolin R., Kremp, Anke, Delorenzo, Marie E., Ovreas, Lise, Tolman, Jennifer, Laroche, Julie, Penna, Antonella, Frischer, Marc, Davis, Timothy, Katherine, Barker, Meyer, Christopher P., Ramos, Sandra, Magalhaes, Catarina, Jude-lemeilleur, Florence, Leopoldina Aguirre-macedo, Ma, Wang, Shiao, Poulton, Nicole, Jones, Scott, Collin, Rachel, Fuhrman, Jed A., Conan, Pascal, Alonso, Cecilia, Stambler, Noga, Goodwin, Kelly, Yakimov, Michael M., Baltar, Federico, Bodrossy, Levente, Van De Kamp, Jodie, Frampton, Dion M. F., Ostrowski, Martin, Van Ruth, Paul, Malthouse, Paul, Claus, Simon, Deneudt, Klaas, Mortelmans, Jonas, Pitois, Sophie, Wallom, David, Salter, Ian, Costa, Rodrigo, Schroeder, Declan C., Kandil, Mahrous M., Amaral, Valentina, Biancalana, Florencia, Santana, Rafael, Pedrotti, Maria Luiza, Yoshida, Takashi, Ogata, Hiroyuki, Ingleton, Tim, Munnik, Kate, Rodriguez-ezpeleta, Naiara, Berteaux-lecellier, Veronique, Wecker, Patricia, Cancio, Ibon, Vaulot, Daniel, Bienhold, Christina, Ghazal, Hassan, Chaouni, Bouchra, Essayeh, Soumya, Ettamimi, Sara, Zaid, El Houcine, Boukhatem, Noureddine, Bouali, Abderrahim, Chahboune, Rajaa, Barrijal, Said, Timinouni, Mohammed, El Otmani, Fatima, Bennani, Mohamed, Mea, Marianna, Todorova, Nadezhda, Karamfilov, Ventzislav, Ten Hoopen, Petra, Cochrane, Guy, L'Haridon, Stephane, Bizsel, Kemal Can, Vezzi, Alessandro, Lauro, Federico M., Martin, Patrick, Jensen, Rachelle M., Hinks, Jamie, Gebbels, Susan, Rosselli, Riccardo, De Pascale, Fabio, Schiavon, Riccardo, Dos Santos, Antonina, Villar, Emilie, Pesant, Stephane, Cataletto, Bruno, Malfatti, Francesca, Edirisinghe, Ranjith, Silveira, Jorge A. Herrera, Barbier, Michele, Turk, Valentina, Tinta, Tinkara, Fuller, Wayne J., Salihoglu, Ilkay, Serakinci, Nedime, Ergoren, Mahmut Cerkez, Bresnan, Eileen, Iriberri, Juan, Nyhus, Paul Anders Fronth, Bente, Edvardsen, Karlsen, Hans Erik, Golyshin, Peter N., Gasol, Josep M., Moncheva, Snejana, Dzhembekova, Nina, Johnson, Zackary, Sinigalliano, Christopher David, Gidley, Maribeth Louise, Zingone, Adriana, Danovaro, Roberto, Tsiamis, George, Clark, Melody S., Costa, Ana Cristina, El Bour, Monia, Martins, Ana M., Collins, R. Eric, Ducluzeau, Anne-lise, Martinez, Jonathan, Costello, Mark J., Amaral-zettler, Linda A., Gilbert, Jack A., Davies, Neil, Field, Dawn, Gloeckner, Frank Oliver, Kopf, Anna, Bicak, Mesude, Kottmann, Renzo, Schnetzer, Julia, Kostadinov, Ivaylo, Lehmann, Katja, Fernandez-guerra, Antonio, Jeanthon, Christian, Rahav, Eyal, Ullrich, Matthias, Wichels, Antje, Gerdts, Gunnar, Polymenakou, Paraskevi, Kotoulas, Giorgos, Siam, Rania, Abdallah, Rehab Z., Sonnenschein, Eva C., Cariou, Thierry, O'Gara, Fergal, Jackson, Stephen, Orlic, Sandi, Steinke, Michael, Busch, Julia, Duarte, Bernardo, Cacador, Isabel, Canning-clode, Joao, Bobrova, Oleksandra, Marteinsson, Viggo, Reynisson, Eyjolfur, Loureiro, Clara Magalhaes, Luna, Gian Marco, Quero, Grazia Marina, Loescher, Carolin R., Kremp, Anke, Delorenzo, Marie E., Ovreas, Lise, Tolman, Jennifer, Laroche, Julie, Penna, Antonella, Frischer, Marc, Davis, Timothy, Katherine, Barker, Meyer, Christopher P., Ramos, Sandra, Magalhaes, Catarina, Jude-lemeilleur, Florence, Leopoldina Aguirre-macedo, Ma, Wang, Shiao, Poulton, Nicole, Jones, Scott, Collin, Rachel, Fuhrman, Jed A., Conan, Pascal, Alonso, Cecilia, Stambler, Noga, Goodwin, Kelly, Yakimov, Michael M., Baltar, Federico, Bodrossy, Levente, Van De Kamp, Jodie, Frampton, Dion M. F., Ostrowski, Martin, Van Ruth, Paul, Malthouse, Paul, Claus, Simon, Deneudt, Klaas, Mortelmans, Jonas, Pitois, Sophie, Wallom, David, Salter, Ian, Costa, Rodrigo, Schroeder, Declan C., Kandil, Mahrous M., Amaral, Valentina, Biancalana, Florencia, Santana, Rafael, Pedrotti, Maria Luiza, Yoshida, Takashi, Ogata, Hiroyuki, Ingleton, Tim, Munnik, Kate, Rodriguez-ezpeleta, Naiara, Berteaux-lecellier, Veronique, Wecker, Patricia, Cancio, Ibon, Vaulot, Daniel, Bienhold, Christina, Ghazal, Hassan, Chaouni, Bouchra, Essayeh, Soumya, Ettamimi, Sara, Zaid, El Houcine, Boukhatem, Noureddine, Bouali, Abderrahim, Chahboune, Rajaa, Barrijal, Said, Timinouni, Mohammed, El Otmani, Fatima, Bennani, Mohamed, Mea, Marianna, Todorova, Nadezhda, Karamfilov, Ventzislav, Ten Hoopen, Petra, Cochrane, Guy, L'Haridon, Stephane, Bizsel, Kemal Can, Vezzi, Alessandro, Lauro, Federico M., Martin, Patrick, Jensen, Rachelle M., Hinks, Jamie, Gebbels, Susan, Rosselli, Riccardo, De Pascale, Fabio, Schiavon, Riccardo, Dos Santos, Antonina, Villar, Emilie, Pesant, Stephane, Cataletto, Bruno, Malfatti, Francesca, Edirisinghe, Ranjith, Silveira, Jorge A. Herrera, Barbier, Michele, Turk, Valentina, Tinta, Tinkara, Fuller, Wayne J., Salihoglu, Ilkay, Serakinci, Nedime, Ergoren, Mahmut Cerkez, Bresnan, Eileen, Iriberri, Juan, Nyhus, Paul Anders Fronth, Bente, Edvardsen, Karlsen, Hans Erik, Golyshin, Peter N., Gasol, Josep M., Moncheva, Snejana, Dzhembekova, Nina, Johnson, Zackary, Sinigalliano, Christopher David, Gidley, Maribeth Louise, Zingone, Adriana, Danovaro, Roberto, Tsiamis, George, Clark, Melody S., Costa, Ana Cristina, El Bour, Monia, Martins, Ana M., Collins, R. Eric, Ducluzeau, Anne-lise, Martinez, Jonathan, Costello, Mark J., Amaral-zettler, Linda A., Gilbert, Jack A., Davies, Neil, Field, Dawn, and Gloeckner, Frank Oliver
- Abstract
Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine microbial biodiversity and function of the world's oceans. It is a simultaneous global mega-sequencing campaign aiming to generate the largest standardized microbial data set in a single day. This will be achievable only through the coordinated efforts of an Ocean Sampling Day Consortium, supportive partnerships and networks between sites. This commentary outlines the establishment, function and aims of the Consortium and describes our vision for a sustainable study of marine microbial communities and their embedded functional traits.
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- 2015
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67. Advancing Model Systems for Fundamental Laboratory Studies of Sea Spray Aerosol Using the Microbial Loop
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Lee, Christopher, primary, Sultana, Camille M., additional, Collins, Douglas B., additional, Santander, Mitchell V., additional, Axson, Jessica L., additional, Malfatti, Francesca, additional, Cornwell, Gavin C., additional, Grandquist, Joshua R., additional, Deane, Grant B., additional, Stokes, M. Dale, additional, Azam, Farooq, additional, Grassian, Vicki H., additional, and Prather, Kimberly A., additional
- Published
- 2015
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68. The ocean sampling day consortium
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Kopf, Anna, primary, Bicak, Mesude, additional, Kottmann, Renzo, additional, Schnetzer, Julia, additional, Kostadinov, Ivaylo, additional, Lehmann, Katja, additional, Fernandez-Guerra, Antonio, additional, Jeanthon, Christian, additional, Rahav, Eyal, additional, Ullrich, Matthias, additional, Wichels, Antje, additional, Gerdts, Gunnar, additional, Polymenakou, Paraskevi, additional, Kotoulas, Giorgos, additional, Siam, Rania, additional, Abdallah, Rehab Z, additional, Sonnenschein, Eva C, additional, Cariou, Thierry, additional, O’Gara, Fergal, additional, Jackson, Stephen, additional, Orlic, Sandi, additional, Steinke, Michael, additional, Busch, Julia, additional, Duarte, Bernardo, additional, Caçador, Isabel, additional, Canning-Clode, João, additional, Bobrova, Oleksandra, additional, Marteinsson, Viggo, additional, Reynisson, Eyjolfur, additional, Loureiro, Clara Magalhães, additional, Luna, Gian Marco, additional, Quero, Grazia Marina, additional, Löscher, Carolin R, additional, Kremp, Anke, additional, DeLorenzo, Marie E, additional, Øvreås, Lise, additional, Tolman, Jennifer, additional, LaRoche, Julie, additional, Penna, Antonella, additional, Frischer, Marc, additional, Davis, Timothy, additional, Katherine, Barker, additional, Meyer, Christopher P, additional, Ramos, Sandra, additional, Magalhães, Catarina, additional, Jude-Lemeilleur, Florence, additional, Aguirre-Macedo, Ma Leopoldina, additional, Wang, Shiao, additional, Poulton, Nicole, additional, Jones, Scott, additional, Collin, Rachel, additional, Fuhrman, Jed A, additional, Conan, Pascal, additional, Alonso, Cecilia, additional, Stambler, Noga, additional, Goodwin, Kelly, additional, Yakimov, Michael M, additional, Baltar, Federico, additional, Bodrossy, Levente, additional, Van De Kamp, Jodie, additional, Frampton, Dion MF, additional, Ostrowski, Martin, additional, Van Ruth, Paul, additional, Malthouse, Paul, additional, Claus, Simon, additional, Deneudt, Klaas, additional, Mortelmans, Jonas, additional, Pitois, Sophie, additional, Wallom, David, additional, Salter, Ian, additional, Costa, Rodrigo, additional, Schroeder, Declan C, additional, Kandil, Mahrous M, additional, Amaral, Valentina, additional, Biancalana, Florencia, additional, Santana, Rafael, additional, Pedrotti, Maria Luiza, additional, Yoshida, Takashi, additional, Ogata, Hiroyuki, additional, Ingleton, Tim, additional, Munnik, Kate, additional, Rodriguez-Ezpeleta, Naiara, additional, Berteaux-Lecellier, Veronique, additional, Wecker, Patricia, additional, Cancio, Ibon, additional, Vaulot, Daniel, additional, Bienhold, Christina, additional, Ghazal, Hassan, additional, Chaouni, Bouchra, additional, Essayeh, Soumya, additional, Ettamimi, Sara, additional, Zaid, El Houcine, additional, Boukhatem, Noureddine, additional, Bouali, Abderrahim, additional, Chahboune, Rajaa, additional, Barrijal, Said, additional, Timinouni, Mohammed, additional, El Otmani, Fatima, additional, Bennani, Mohamed, additional, Mea, Marianna, additional, Todorova, Nadezhda, additional, Karamfilov, Ventzislav, additional, ten Hoopen, Petra, additional, Cochrane, Guy, additional, L’Haridon, Stephane, additional, Bizsel, Kemal Can, additional, Vezzi, Alessandro, additional, Lauro, Federico M, additional, Martin, Patrick, additional, Jensen, Rachelle M, additional, Hinks, Jamie, additional, Gebbels, Susan, additional, Rosselli, Riccardo, additional, De Pascale, Fabio, additional, Schiavon, Riccardo, additional, dos Santos, Antonina, additional, Villar, Emilie, additional, Pesant, Stéphane, additional, Cataletto, Bruno, additional, Malfatti, Francesca, additional, Edirisinghe, Ranjith, additional, Silveira, Jorge A Herrera, additional, Barbier, Michele, additional, Turk, Valentina, additional, Tinta, Tinkara, additional, Fuller, Wayne J, additional, Salihoglu, Ilkay, additional, Serakinci, Nedime, additional, Ergoren, Mahmut Cerkez, additional, Bresnan, Eileen, additional, Iriberri, Juan, additional, Nyhus, Paul Anders Fronth, additional, Bente, Edvardsen, additional, Karlsen, Hans Erik, additional, Golyshin, Peter N, additional, Gasol, Josep M, additional, Moncheva, Snejana, additional, Dzhembekova, Nina, additional, Johnson, Zackary, additional, Sinigalliano, Christopher David, additional, Gidley, Maribeth Louise, additional, Zingone, Adriana, additional, Danovaro, Roberto, additional, Tsiamis, George, additional, Clark, Melody S, additional, Costa, Ana Cristina, additional, El Bour, Monia, additional, Martins, Ana M, additional, Collins, R Eric, additional, Ducluzeau, Anne-Lise, additional, Martinez, Jonathan, additional, Costello, Mark J, additional, Amaral-Zettler, Linda A, additional, Gilbert, Jack A, additional, Davies, Neil, additional, Field, Dawn, additional, and Glöckner, Frank Oliver, additional
- Published
- 2015
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69. Biocompatible Optically Transparent MEMS for Micromechanical Stimulation and Multimodal Imaging of Living Cells
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Fior, Raffaella, primary, Kwok, Jeanie, additional, Malfatti, Francesca, additional, Sbaizero, Orfeo, additional, and Lal, Ratnesh, additional
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- 2014
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70. Corrigendum: Broad distribution and high proportion of protein synthesis active marine bacteria revealed by click chemistry at the single cell level
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Samo, Ty J., primary, Smriga, Steven, additional, Malfatti, Francesca, additional, Sherwood, Byron P., additional, and Azam, Farooq, additional
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- 2014
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71. Broad distribution and high proportion of protein synthesis active marine bacteria revealed by click chemistry at the single cell level
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Samo, Ty J., primary, Smriga, Steven, additional, Malfatti, Francesca, additional, Sherwood, Byron P., additional, and Azam, Farooq, additional
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- 2014
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72. Isolation and Characterization of a Psychropiezophilic Alphaproteobacterium
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Eloe, Emiley A., primary, Malfatti, Francesca, additional, Gutierrez, Jennifer, additional, Hardy, Kevin, additional, Schmidt, Wilford E., additional, Pogliano, Kit, additional, Pogliano, Joe, additional, Azam, Farooq, additional, and Bartlett, Douglas H., additional
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- 2011
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73. Quantitative role of shrimp fecal bacteria in organic matter fluxes in a recirculating shrimp aquaculture system
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Beardsley, Christine, primary, Moss, Shaun, additional, Malfatti, Francesca, additional, and Azam, Farooq, additional
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- 2011
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74. Faculty Opinions recommendation of High bicarbonate assimilation in the dark by Arctic bacteria.
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Azam, Farooq, primary, Garren, Melissa, additional, and Malfatti, Francesca, additional
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- 2011
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75. High-resolution imaging of pelagic bacteria by Atomic Force Microscopy and implications for carbon cycling
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Malfatti, Francesca, primary, Samo, Ty J, additional, and Azam, Farooq, additional
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- 2009
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76. Major Role of Microbes in Carbon Fluxes during Austral Winter in the Southern Drake Passage
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Manganelli, Maura, primary, Malfatti, Francesca, additional, Samo, Ty J., additional, Mitchell, B. Greg, additional, Wang, Haili, additional, and Azam, Farooq, additional
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- 2009
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77. Erratum: Microbial structuring of marine ecosystems
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Azam, Farooq, primary and Malfatti, Francesca, additional
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- 2007
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78. Microbial structuring of marine ecosystems
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Azam, Farooq, primary and Malfatti, Francesca, additional
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- 2007
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79. High-resolution imaging of pelagic bacteria by Atomic Force Microscopy and implications for carbon cycling.
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Malfatti, Francesca, Samo, Ty J., and Azam, Farooq
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OCEANOGRAPHY , *MARINE sciences , *BACTERIAL physiology , *CARBON cycle , *BIOGEOCHEMICAL cycles - Abstract
In microbial oceanography, cell size, volume and carbon (C) content of pelagic bacteria and archaea (‘bacteria’) are critical parameters in addressing the in situ physiology and functions of bacteria, and their role in the food web and C cycle. However, because of the diminutive size of most pelagic bacteria and errors caused by sample fixation and processing, an accurate measurement of the size and volume has been challenging. We used atomic force microscopy (AFM) to obtain high-resolution images of pelagic bacteria and Synechococcus. We measured the length, width and height of live and formalin-fixed pelagic bacteria, and computed individual cell volumes. AFM-based measurements were compared with those by epifluorescence microscopy (EFM) using 4′,6-diamidino-2-phenylindole (DAPI). The ability to measure cell height by AFM provides methodological advantage and ecophysiological insight. For the samples examined, EFM (DAPI)-based average cell volume was in good agreement (1.1-fold) with live sample AFM. However, the agreement may be a fortuitous balance between cell shrinkage due to fixation/drying (threefold) and Z-overestimation (as EFM does not account for cell flattening caused by sample processing and assumes that height=width). The two methods showed major differences in cell volume and cell C frequency distributions. This study refines the methodology for quantifying bacteria-mediated C fluxes and the role of bacteria in marine ecosystems, and suggests the potential of AFM for individual cell physiological interrogations in natural marine assemblages. [ABSTRACT FROM AUTHOR]
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- 2010
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80. Citizen science and crowdsourcing in the field of marine scientific research - the MaDCrow project.
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Diviacco, Paolo, Nadali, Antonio, Iurcev, Massimiliano, Carbajales, Rodrigo, Malfatti, Francesca, Grio, Lorenzo, Busato, Alessandro, Pavan, Alessandro, and Nolich, Massimiliano
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CITIZEN science , *CROWDSOURCING , *CLIMATE change mitigation , *MARINE engineering , *SOCIAL participation - Abstract
Conclusions Madcrow demonstrated non only the feasibility but also the vast possibilities that the citizen science approach can have from the perspective of providing researchers with large quantities of data covering large geographical areas with very low costs. International Conference on Marine Data and Information Systems 12-14 Aprile, 2021- Online 179 Citizen science and crowdsourcing in the field of marine scientific research - the MaDCrow project Paolo Diviacco, OGS National Institute of Oceanography and Applied Geophysics (Italy), pdiviacco@inogs.it Antonio Nadali, Transpobank (Italy), nadali@tbk.it Massimiliano Iurcev, OGS National Institute of Oceanography and Applied Geophysics (Italy), miurcev@inogs.it Rodrigo Carbajales, OGS National Institute of Oceanography and Applied Geophysics (Italy), rcarbajales@inogs.it Francesca Malfatti, OGS National Institute of Oceanography and Applied Geophysics (Italy), fmalfatti@inogs.it Lorenzo Grio, Transpobank (Italy), grio@tbk.it Alessandro Busato, OGS National Institute of Oceanography and Applied Geophysics (Italy), abusato@inogs.it Alessandro Pavan, OGS National Institute of Oceanography and Applied Geophysics (Italy), apavan@inogs.it Massimiliano Nolich, University of Trieste (Italy), mnolich@units.it Introduction MaDCrow (Marine Data Crowdsourcing) is a marine technology research and development project co-funded by the European Regional Development Fund (ERDF), that aims to create an innovative technological infrastructure for the acquisition, integration and dissemination of data on the marine ecosystem of the Gulf of Trieste based on a citizen science paradigm. [Extracted from the article]
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- 2021
81. Microbe-assisted seedling crop improvement by a seaweed extract to address fucalean forest restoration
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Francesca Malfatti, Sara Kaleb, Amira Saidi, Alberto Pallavicini, Laura Agostini, Fabrizia Gionechetti, Sara Natale, Cecilia Balestra, Stanislao Bevilacqua, Annalisa Falace, Malfatti, Francesca, Kaleb, Sara, Saidi, Amira, Pallavicini, Alberto, Agostini, Laura, Gionechetti, Fabrizia, Natale, Sara, Balestra, Cecilia, Bevilacqua, Stanislao, and Falace, Annalisa
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Global and Planetary Change ,Fucales ,microbe ,biofilm ,ecological restoration ,ex-situ culture ,algal extract ,Fucale ,Ocean Engineering ,Aquatic Science ,Oceanography ,Water Science and Technology - Abstract
In the Mediterranean, Cystoseira sensu lato (s.l.) (Phaeophyceae) forests have sharply declined and restoration measures are needed to compensate for the loss. Assisted regeneration through the outplanting of seedlings grown ex-situ has proven to be a sustainable option. Optimizing mesocosm culture can maximize survival of the most critical embryonic stages and reduce long-term maintenance costs. Host-microbiome interactions could also play a crucial role in seedling development and welfare. In this context, we aimed to advance a cultivation protocol that stimulates the growth and fitness of Ericaria amentacea (Phaeophyceae) seedlings and identify the associated microbial biofilm communities. Seedlings were cultured in 6 treatments [i.e., filtered seawater (SW, C, Control), von Stoch-enriched SW (VS), VS + algal extract (VSA), algal extract-enriched SW: A1< A2< A3]. After the field, A2 seedlings had the highest cover (1372 ± 53.66 mm2), which was 1.8 and 1.9 times greater than in VS and VSA, respectively. The addition of the algal extract and nutrients significantly affected the structure and composition of the microbial community that shifted over time in each culture medium. We identified a treatment-specific microbial fingerprint. After the mesocosm phase, A2 was characterized by 4 unique taxa: Postechiella, Winogradskyella, Roseovarius and Arenibacter (Bacteria). Given the success of A2 seedlings, we propose the probiotic consortia candidates characterized by the unique treatment-taxa in conjunction with the shared taxon Psychroserpens (Bacteria, present in A1, A2, VSA, VS) and the reminder community. Within the holobiont concept, the effect of algal extract or nutrients on the algae and/or biofilm could have important consequences for tuning the overall interaction networks. Our study has shown that macroalgal restoration could benefit from both the use of commercial algal extract and tailored nutrient enrichment in ex-situ cultures and the identification of probiotic consortia candidates that promote seedling growth.
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- 2023
82. Ecological Role of Microbes: Current Knowledge and Future Prospects
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Mauro Celussi, Francesca Malfatti, Valentina Turk, Feng Chen, Jacob A. Cram, Sairah Y. Malkin, Tinkara Tinta, Thomas C. Malone, Alenka Malej, Jadran Faganeli, Turk, Valentina, Malkin, Sairah, Celussi, Mauro, Tinta, Tinkara, Cram, Jacob, Malfatti, Francesca, and Chen, Feng
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Microbes ,climate change ,Chesapeake bay ,Ecology ,Environmental science ,anthropogenic pressure ,diversity ,ecology ,Microbe - Abstract
Chesapeake Bay (CB) and the northern Adriatic Sea (NAS) exhibit contrasting patterns in trophic status and thereby offer contrasting case studies in microbial ecology. In the surface mixed layer in both systems, the abundance and productivity of cyanobacteria and of heterotrophic bacteria exhibit summer maxima and winter minima. Available evidence implicates temperature as a major constraint during winter and spring, and supply of nutrients and/or dissolved organic carbon during summer. Bacterioplankton density is an order of magnitude higher in CB than in the NAS, while productivity varies over similar ranges in both systems, suggesting higher bacterioplankton turnover in the NAS. Where data exist, phages seem to play an important role in constraining cyanobacterial and heterotrophic bacterioplankton abundance. The ratio of viral‐like particles to bacteria was higher in the NAS, however, which may explain the higher turnover rate of heterotrophic bacteria. In the NAS, bacterial abundance has been in decline since the early 2000s, associated with declining nutrient loading, while changes in CB have not been documented. Projected climate‐driven changes in riverine nutrient loading and increases in the duration of the growing season are likely to increase contrasts observed in the microbial ecology of the two systems.
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- 2020
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83. Prokaryotic Response to Phytodetritus-Derived Organic Material in Epi- and Mesopelagic Antarctic Waters
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Vincenzo Manna, Francesca Malfatti, Elisa Banchi, Federica Cerino, Fabio De Pascale, Annalisa Franzo, Riccardo Schiavon, Alessandro Vezzi, Paola Del Negro, Mauro Celussi, Manna, Vincenzo, Malfatti, Francesca, Banchi, Elisa, Cerino, Federica, De Pascale, Fabio, Franzo, Annalisa, Schiavon, Riccardo, Vezzi, Alessandro, Del Negro, Paola, and Celussi, Mauro
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Microbiology (medical) ,Chlorophyll a ,Mesopelagic zone ,Heterotroph ,lcsh:QR1-502 ,Microbiology ,lcsh:Microbiology ,03 medical and health sciences ,chemistry.chemical_compound ,Total inorganic carbon ,Phytoplankton ,carbon cycle ,16S rRNA ,extracellular enzymes ,free-living ,microbial community ,particle-attached ,particulate organic matter ,Southern Ocean ,Organic matter ,Original Research ,030304 developmental biology ,chemistry.chemical_classification ,0303 health sciences ,Detritus ,030306 microbiology ,Chemistry ,fungi ,Phytodetritus ,extracellular enzyme ,Environmental chemistry - Abstract
Particulate organic matter (POM) export represents the underlying principle of the biological carbon pump, driving the carbon flux from the sunlit to the dark ocean. The efficiency of this process is tightly linked to the prokaryotic community, as >70% of POM respiration is carried out by particle-associated prokaryotes. In the Ross Sea, one of the most productive areas of the Southern Ocean, up to 50% of the surface primary production is exported to the mesopelagic ocean as POM. Recent evidence suggests that a significant fraction of the POM in this area is composed of intact phytoplankton cells. During austral summer 2017, we set up bottle enrichment experiments in which we amended free-living surface and deep prokaryotic communities with organic matter pools generated from native microplankton, mimicking the particle export that may derive from mild (1 μg of Chlorophyll a L–1) and intense (10 μg of Chlorophyll a L–1) phytoplankton bloom. Over a course of 4 days, we followed free-living and particle-attached prokaryotes’ abundance, the degradation rates of polysaccharides, proteins and lipids, heterotrophic production as well as inorganic carbon utilization and prokaryotic community structure dynamics. Our results showed that several rare or undetected taxa in the initial community became dominant during the time course of the incubations and that different phytodetritus-derived organic matter sources induced specific changes in microbial communities, selecting for peculiar degradation and utilization processes spectra. Moreover, the features of the supplied detritus (in terms of microplankton taxa composition) determined different colonization dynamics and organic matter processing modes. Our study provides insights into the mechanisms underlying the prokaryotic utilization of phytodetritus, a significant pool of organic matter in the dark ocean.
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- 2020
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84. Biocompatible Optically Transparent MEMS for Micromechanical Stimulation and Multimodal Imaging of Living Cells
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Francesca Malfatti, Ratnesh Lal, Orfeo Sbaizero, Raffaella Fior, Jeanie Kwok, Fior, Raffaella, Kwok, Jeanie, Malfatti, Francesca, Sbaizero, Orfeo, and Lal, Ratnesh
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Materials science ,Mechanobiological Phenomena ,Biocompatibility ,Biomedical Engineering ,Nanotechnology ,Stress ,Microscopy, Atomic Force ,Medical and Health Sciences ,Fluorescence ,Article ,Stress (mechanics) ,Atomic force microscopy ,Mice ,Engineering ,Microelectromechanical systems Microfabrication Atomic force microscopy Cell stretching Mechanosensitive ion channels ,Microscopy ,Animals ,Microelectromechanical systems ,Mechano-sensitive ion channels ,Atomic Force ,Adhesion ,Mechanical ,Cell stretching ,Coupling (electronics) ,Microscopy, Fluorescence ,NIH 3T3 Cells ,Microfabrication ,Stress, Mechanical - Abstract
Cells and tissues in our body are continuously subjected to mechanical stress. Mechanical stimuli, such as tensile and contractile forces, and shear stress, elicit cellular responses, including gene and protein alterations that determine key behaviors, including proliferation, differentiation, migration, and adhesion. Several tools and techniques have been developed to study these mechanobiological phenomena, including micro-electro-mechanical systems (MEMS). MEMS provide a platform for nano-to-microscale mechanical stimulation of biological samples and quantitative analysis of their biomechanical responses. However, current devices are limited in their capability to perform single cell micromechanical stimulations as well as correlating their structural phenotype by imaging techniques simultaneously. In this study, a biocompatible and optically transparent MEMS for single cell mechanobiological studies is reported. A silicon nitride microfabricated device is designed to perform uniaxial tensile deformation of single cells and tissue. Optical transparency and open architecture of the device allows coupling of the MEMS to structural and biophysical assays, including optical microscopy techniques and atomic force microscopy (AFM). We demonstrate the design, fabrication, testing, biocompatibility and multimodal imaging with optical and AFM techniques, providing a proof-of-concept for a multimodal MEMS. The integrated multimodal system would allow simultaneous controlled mechanical stimulation of single cells and correlate cellular response.
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- 2014
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