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As part of a restoration project designed to enhance Chinook salmon populations in the lower Yuba River, we sought to characterize river temperatures at micro-habitats scales relevant to juveniles. Given that temperatures vary more across the channel than they do longitudinally, temperature had to be assayed both along the length of a study reach as well as across the channel. These temperatures needed to be measured at least hourly in order to capture the totality of the diel fluctuations. It was necessary to sample for the full duration of juvenile residence in the lower Yuba River – a six-month period over the winter. Though it was desirable to design a system that could sample for at least a year to capture the totality of seasonal fluctuations. In this paper, we present the design, implementation and deployment of a wireless sensor network that was installed to monitor temperature data on the Lower Yuba River. The mesh network was implemented using nodes that contained a MSP430 chipset with a radio operating at 433 MHz. We describe the network architecture which included a network storage function to address intermittent link failures. We describe the event-based software architecture of the mesh network mode specifically in relation to energy optimization. We also give details of the deployment and provide measurement data.

Author(s): Singer, GP; Hansen, MJ; Ho, KV; Lee, KW; Cocherell, DE; Peter Klimley, A; Rypel, AL; Fangue, NA | Abstract: Acoustic telemetry, a commonly used tool for examining movements and survival of aquatic species, is often applied without a comprehensive understanding of transmitter implantation effects. This can be problematic when the goal of the study is to use telemetry results to make inferences regarding broader populations. Here, we examined juvenile Chinook Salmon Oncorhynchus tshawytscha at varying time intervals after transmitter implantation to assess the behavioral implications of tagging. The following behavioral metrics in response to a novel environment were compared across treatment and control groups: time to emergence from shelter into the open portion of the test arena, rheotactic response, total activity, and rates of exploration. Tagged fish (114–132nmm FL) were tested at 0, 1, or 4nd postsurgery (day-0, day-1, and day-4 groups, respectively), and their behavior was compared to that of similarly handled control fish. Emergence from refuge was the only metric that differed significantly between treatment and control groups. Fish tested on the same day as the surgery were less likely to emerge from the refuge, with only 46% of the day-0 tagged fish emerging compared to 88, 93, and 80% of the day-1, day-4, and control groups, respectively. However, day-0 fish that did emerge from the refuge had rheotactic responses, total activity, and exploration rates similar to those of fish from the other treatment and control groups. This study may have fisheries research and management implications, especially for telemetry studies and monitoring efforts. We encourage researchers using this technology to consider (1) observing a post-transmitter-implantation recovery period of at least 24nh prior to release, adjusting study plans and logistics accordingly; (2) applying sufficient scientific rigor to emerging tagging technology prior to wide-scale adoption; and (3) when possible, conducting concurrent battery life and tag effects studies with any field release of tagged fishes, as differing relationships between fish size, tag size, and tagging techniques may yield variable results.

Early developmental stages of fishes are particularly sensitive to changes in environmental variables that affect physiological processes such as metabolism and growth. Both temperature and food availability have significant effects on the growth and survival of larval and juvenile fishes. As climate change and anthropogenic disturbances influence sensitive rearing environments of fishes it is unlikely that they will experience changes in temperature or food availability in isolation. Therefore, it is critical that we determine the effects of each of these potential stressors on larval growth and development, as well as understand the additive, synergistic or antagonistic effects of both. We reared threatened green sturgeon Acipenser medirostris (initial age ca. 32 days post hatch) at four temperatures (11, 13, 16 and 19°C) and two food availability rates (100% and 40% of optimal) to assess the effects of these stressors and their interactions on larval growth. We compared the overall size (fork length, total length and mass), growth rates (cm day-1 and g day-1 ) and relative condition factor of these larval and juvenile fish at 3 week intervals for up to 12 weeks. Our results indicated that temperature and food availability both had significant effects on growth and condition and that there was a significant interaction between the two. Fish reared with limited food availability exhibited similar patterns in growth rates to those reared with elevated food rates, but the effects of temperature were greatly attenuated when fish were food-limited. Also, the effects of temperature on condition were reversed when fish were reared with restricted food, such that fish reared at 19°C exhibited the highest relative condition when fed optimally, but the lowest relative condition when food was limited. These data are critical for the development of relevant bioenergetics models, which are needed to link the survival of larval sturgeons with historic environmental regimes, pinpoint temperature ranges for optimal survival and help target future restoration sites that will be important for the recovery of sturgeon populations.

Understanding physiological limits and the ability to acclimatize to changing conditions will determine whether species will be able to cope with further increases in water temperature. Changes in temperature may be considered to become stressful for an ectotherm when it results in reduced performance, which can lead to fitness level consequences. The relative intensity of the stressor as well as the duration of the exposure to the stressor will determine the response observed. Transcriptomic responses can potentially indicate thresholds where physiological performance begins to decline. An understanding of the cellular shifts throughout the temperature range that an organism experiences in the wild is often lacking, especially for species of conservation concern such as the delta smelt (Hypomesus transpacificus). We examined the expression of 15 genes that represented cellular responses related to stress, growth, cell proliferation and osmoregulation to show how the response patterns change to acute increases in temperatures that occur throughout the thermal distribution of the species. Several genes showed U-shaped or inverted U-shaped response patterns suggesting the presence of sub-lethal thresholds as temperatures increase. We also highlight the importance of including a temporal component to exposure studies as several genes showed a delay in the recovery to control levels at extreme temperatures. We propose that the non-linear response patterns represent sub-lethal thermal thresholds that can predict the severity of the response to thermal stressors. Identifying these sub-lethal thresholds can help differentiate between responses to routine increases in water temperature and responses that can lead to longer-term fitness impacts.

Anthropogenic water management projects and facilities that alter the local and regional hydrology of riverine environments greatly influence the behavior, physiology, and survival of native fishes. To mitigate for losses of native fishes at these structures, many are outfitted with fish-exclusion screens to reduce entrainment. The effect of fish size and age on behavior near fish screens, however, is largely unknown. Therefore, we tested two size classes of juvenile green sturgeon (Acipenser medirostris; small, early juveniles: 9.2 ± 0.2 cm fork length [FL], 6.9 ± 0.3 g; intermediate juveniles: 18.8 ± 0.2 cm FL, 36.9 ± 0.8 g) near fish-exclusion screens in a laboratory swimming flume. Although size was a significant factor influencing the way in which fish contacted the screens (i.e., proportion of body contacts, p = 2.5 × 10−9), it did not significantly influence the number of times fish contacted screens or the amount of time fish spent near screens. We also compared the performance of these two size classes to that of older and larger sturgeon that were tested previously (29.6 ± 0.2 cm FL, 147.1 ± 3.1 g), and documented a clear difference in the behavior of the fish that resulted in disparities in how the large fish contacted screens relative to small- or intermediate-sized juveniles (p = 0.005, 5.4 × 10−4, respectively). Our results further our understanding of how ontogeny affects fish behavior near anthropogenic devices, and are informative for managers seeking to identify the most susceptible size and age class of juvenile green sturgeon to water-diversion structures to potentially develop size-specific conservation strategies.

Fish health can be affected by many environmental factors including infection with pathogens. Infectious disease can lead to high mortality in wild populations and in aquaculture, resulting in significant economic losses. Teleost fishes share a highly conserved response to pathogen infections, starting with an immediate activation of the innate immune response before shifting to an adaptive immune response. Fishes also show altered transcriptomic expression in stress-related genes during acute and chronic infections. The ciliate Ichthyophthirius multifiliis ( Ich ) is one of the most widely distributed ectoparasites for freshwater fish, providing the possibility to identify infection severity via phenotypical assessments. Molecular markers are increasingly incorporated in health assessments and to determine sublethal physiological responses to stressors. We evaluated the effects of an infection with Ich using the pelagic fish species delta smelt ( Hypomesus transpacificus ) as a model. We investigated transcriptional changes of ten genes belonging to the innate immune response and five heat shock genes related to thermal and general stress response. Molecular assessments were conducted in three tissues (gill, spleen and kidney), and collected from fish with different infection intensities. The combination of molecular markers, including immune and stress-related genes, resulted in significant differentiation between infection levels in all tissue types. The strongest results were observed in gill and kidney, however, the detection of infection severity was most effective when combining the transcriptomic results from all tissues. Chemokine cxcb was the most responsive gene in all tissues and provided significant upregulation in fish with visible Ich -infection. The identification of molecular markers targeting fundamental host responses associated with infections is contributing to the establishment of techniques to assess fish health in natural habitats and in aquaculture.

The relationship between individual physiological traits and social behaviour is an important research area because it can examine how mechanisms of behaviour link to functional outcomes. It is hypothesised that correlative and causative links between physiology and individual behaviour may be altered by social interactions. Here, we assess how nutritional stress (20-h starved, 90-h starved) and routine metabolic rate (RMR) determine the movement and foraging behaviour of threespine sticklebacks (Gasterosteus aculeatus), both individually and in a social context. Results showed that there was no statistically significant relationship between RMR and behaviour. The nutritional stress treatment had significant opposite effects on voluntary swim speed, dependent on whether fish were assayed asocially (alone) or socially (in shoals of three). Greater nutritional stress caused voluntary swimming speeds to reduce in an asocial context but increase in a social context, although both relationships were not significant. Additional results exploring social behaviour parameters such as the frequency and duration of shoaling interactions suggests that alterations in fish swim speed between the two nutritional stress treatments may be due to competition effects. This study links state-dependent individual behaviour to social foraging performance and reinforces the theory that social context is an important modulator of the relationships between physiology and behaviour. Recent research has highlighted that the social environment may shape how physiology and behaviour are linked. This area of research, however, requires data from empirical studies that measure and experimentally manipulate physiological traits of individually identifiable animals and tests them under asocial and social conditions. Using threespine sticklebacks foraging for bloodworms, we show that routine metabolic rate did not have a statistically significant effect on fish locomotion or risk-taking. Greater nutritional deprivation caused fish to decrease their swimming speed when they were alone (likely in an effort to reduce energy expenditure); however, when assayed in groups, competitive forces between shoal mates caused them to swim at faster voluntary speeds. Nutritional stress therefore had a significant socially dependent effect on fish locomotion.

The Sacramento splittail (Pogonichthys macrolepidotus) is a species of special concern that is native to the San Francisco Estuary, USA. Two genetically distinct populations exist and differ in maximal salinity tolerances. We examined the expression of 12 genes representative of osmoregulatory functions in the gill over a 14 day time course at two different salinities [11 or 14 PSU (Practical Salinity Units)] and revealed that each population showed distinct patterns of gene expression consistent with population differences in response to osmotic regimes. The relatively more salinity-tolerant San Pablo population significantly upregulated nine out of the 12 transcripts investigated on day 1 of 11 PSU salinity exposure in comparison to the day zero freshwater control. Three transcripts (nka1a, nka1b, and mmp13) were differentially expressed between the populations at 7 and 14 days of salinity exposure, suggesting a reduced ability of the relatively salinity-intolerant Central Valley population to recover. Additionally, a phylogenetic analysis of several Sacramento splittail Na+/K+-ATPase α1 sequences resulted in grouping by proposed paralog rather than species, suggesting that different paralogs of this gene may exist. These findings, together with prior research conducted on the Sacramento splittail, suggest that the San Pablo population may be able to preferentially regulate select osmoregulatory genes, including different Na+/K+-ATPase α1 paralogs, to better cope with salinity challenges.

Southern distinct population segment (sDPS) juvenile Green Sturgeon are thought to rear in the Sacramento-San Joaquin Delta for two to four years. The southern population segment has been listed as “threatened” under the Endangered Species Act. Habitat loss is cited as a significant driver in declines of the population. Specific to juvenile rearing, much of the historic floodplain habitat has been lost and replaced by leveed channelized waterways. In addition to geomorphic alterations, other direct and indirect activities such as water export, dredging, and the introduction of invasive species may have significant impacts to the viability of the species. The objective of this tracking study was to provide a first of its kind look at the movements and behaviors of wild caught juvenile Green Sturgeon within the putative nursery grounds of the Sacramento-San Joaquin Delta. We acoustically tagged and continuously tracked six yearling juvenile Green Sturgeon with mean total length (TL) of 50.6cm (SD = 5.3) and mean mass of 563.3g (SD = 151.7). We performed continuous mobile tracking for a period of up to five days per individual while recording GPS coordinates, depths, and water temperature at the sturgeon’s location. We used first-passage times, defined as the amount of time spent within a given area, for which a radius was determined post hoc. First passage times were used as a metric for parsing bouts of localized movements from directed movements. Our results indicate that juvenile Green Sturgeon largely oriented at or near the bottom. Depths utilized by all sturgeon ranged from >3m to 20m across all tracks. Individuals exhibited fidelity to the San Joaquin River Channel with only one individual leaving the main channel. Juvenile green sturgeon were shown to exhibit both positive and negative rheotaxis during sustained directed movements under independent ebb tidal cycles. This study provides the first detailed examination into the early life movements and behaviors of a rare species within their putative nursery grounds.

Genetically distinct populations of the Sacramento splittail, a minnow endemic to the San Francisco Estuary, exhibit different tolerances and osmoregulatory and metabolic responses to salinity as adults. Inter-population variation corresponds with that of juveniles and known salinity habitat differences, suggesting some degree of local adaptation., The Sacramento splittail (Pogonichthys macrolepidotus) is composed of two genetically distinct populations endemic to the San Francisco Estuary (SFE). The allopatric upstream spawning habitat of the Central Valley (CV) population connects with the sympatric rearing grounds via relatively low salinity waters, whereas the San Pablo (SP) population must pass through the relatively high-salinity Upper SFE to reach its allopatric downstream spawning habitat. We hypothesize that if migration through SFE salinities to SP spawning grounds is more challenging for adult CV than SP splittail, then salinity tolerance, osmoregulatory capacity, and metabolic responses to salinity will differ between populations. Osmoregulatory disturbances, assessed by measuring plasma osmolality and ions, muscle moisture and Na+-K+-ATPase activity after 168 to 336 h at 11‰ salinity, showed evidence for a more robust osmoregulatory capacity in adult SP relative to CV splittail. While both resting and maximum metabolic rates were elevated in SP splittail in response to increased salinity, CV splittail metabolic rates were unaffected by salinity. Further, the calculated difference between resting and maximum metabolic values, aerobic scope, did not differ significantly between populations. Therefore, improved osmoregulation came at a metabolic cost for SP splittail but was not associated with negative impacts on scope for aerobic metabolism. These results suggest that SP splittail may be physiologically adjusted to allow for migration through higher-salinity waters. The trends in interpopulation variation in osmoregulatory and metabolic responses to salinity exposures support our hypothesis of greater salinity-related challenges to adult CV than SP splittail migration and are consistent with our previous findings for juvenile splittail populations, further supporting our recommendation of population-specific management.

Rationale Oxygen isotope ratios (δ18 O values) of fish otoliths (ear bones) are valuable geochemical tracers of water conditions and thermal life history. Delta Smelt (Hypomesus transpacificus) are osmerid forage fish endemic to the San Francisco Estuary, California, USA, that are on the verge of extinction. These fish exhibit a complex life history that allows them to survive in a dynamic estuarine environment; however, a rapidly warming climate threatens this thermally sensitive species. Here we quantify the accuracy and precision of using δ18 O values in otoliths to reconstruct the thermal life histories of Delta Smelt. Methods Delta Smelt were reared for 360 days using three different water sources with different ambient δ18 Owater values (-8.75‰, -5.28‰, and -4.06‰) and different water temperatures (16.4°C, 16.7°C, 18.7°C, and 20.5°C). Samples were collected after 170 days (n = 28) and 360 days (n = 14) post-hatch. In situ δ18 O values were measured from the core of the otolith to the dorsal edge using secondary ion mass spectrometry (SIMS) to reconstruct temporally resolved thermal life histories. Results The δ18 Ootolith values for Delta Smelt varied as a linear inverse function of water temperature: 1000 ln α = 18.39 (±0.43, 1SE)(103 TK-1 ) - 34.56 (±1.49, 1SE) and δ18 Ootolith(VPDB) - δ18 Owater (VPDB) = 31.34(±0.09, 1SE) - 0.19(±0.01, 1SE) × T ° C. When the ambient δ18 Owater value is known, this species-specific temperature-dependent oxygen isotope fractionation model facilitated the accurate (0.25°C) and precise (±0.37°C, 2σ) reconstruction of the water temperature experienced by the fish. In contrast, the use of existing general fractionation equations resulted in inaccurate temperature reconstructions. Conclusions The species-specific δ18 Ootolith fractionation equation allowed for accurate and precise reconstructions of water temperatures experienced by Delta Smelt. Characterization of ambient δ18 Owater values remains a critical next step for reconstructing thermal life histories of wild Delta Smelt. This tool will provide new insights into habitat utilization, potential thermal refugia, and resilience to future warming for this critically endangered fish.

© 2019, Springer Nature B.V. Predation and reduced energetic intake have been highlighted as potential mechanisms of recruitment failure in sturgeon populations. These two factors may interact, as foraging carries with it costs of increased predation risk, requiring behavioral trade-offs. We expect that juvenile sturgeon should express predator avoidance behaviors while they are within vulnerable size ranges, yet these behaviors should be modified by nutritional state. To evaluate behavioral trade-offs of juvenile white sturgeon, we designed an experiment to test the interacting effects of acute nutritional state and predation risk on the spatial distribution and movement of small groups (n = 6). Groups were assigned to one of four treatments, designed as a full factorial of nutritional state (well-fed or starved 24-h) and predation risk (largemouth bass present or absent), and eight replicates were conducted for each treatment. Juvenile sturgeon displayed a predicted and adaptive response to predation risk and predator aggression levels by reducing activity levels and displaying marked freezing behavior. Sturgeon responded strongly to nutritional deprivation through increased activity and increased near-neighbor distance, which was likely an adaptive response to increase encounter rates with benthic food items. Both of these responses to starvation were suppressed in the presence of predators. This study has provided experimental evidence that predators can abruptly reduce the foraging activity of white sturgeon, possibly reducing growth rates and extending the period of juvenile vulnerability. Future conservation planning should consider the interacting effects of multiple stressors experienced by sturgeon at early life-stages, as introduced predators and degraded foraging habitats may have interacting effects.

The abundance of longfin smelt (Spirinchus thaleichthys) in the San Francisco Estuary (SFE) has declined to less than 1% of historic numbers, contributing to their listing as “threatened” under the California Endangered Species Act. To prevent local extirpation, a captive culture program is being developed for the longfin smelt at the Fish Conservation Culture Laboratory at UC Davis. To begin systematically addressing current issues with larviculture methods, we tested the effects of temperature on longfin smelt embryos from 7 clutches with different parentages. We reared embryos and newly hatched non-feeding yolk-sac larvae in freshwater at 9, 12, or 15 °C until the age when these fish underwent mass mortality (>90% mortality) during the experiment (3, 4, or 5 days post-hatch (dph), depending on rearing temperature). We measured hatch success, hatch morphometrics (notochord length, dry mass, yolk volume, and oil volume), length and dry mass growth rates, yolk and oil resorption rates, routine oxygen consumption rate, and locomotor activity (percent of time spent moving, total distance travelled, and average swimming velocity). Embryos and larvae reared at 15 °C performed poorly, experiencing reduced hatch success, hatch notochord lengths, growth rates, and earlier mass mortality. Embryos reared at 9 and 12 °C had similar hatch success but at hatch, larvae were longer at 9 compared to 12 °C. However, larvae grew faster in 12 compared to 9 °C resulting in both temperature groups having similar lengths prior to mass mortality (4 dph for 12 °C and 5 dph for 9 °C). Temperature had no effect on routine oxygen consumption rate among temperature groups but locomotor activity was elevated at 9 and 15 °C groups compared to 12 °C, suggesting that locomotor activity consumed a higher proportion of the energy budget, leaving a smaller fraction for growth. Finally, larval swimming speeds, one day prior to each temperature's respective day of mass mortality, were higher at 12 °C (3 dph) compared to 9 (4 dph) and 15 °C (2 dph), which could lead to higher foraging success. Interclutch variation was high, however, suggesting that parentage effects may result in brood-specific variation in the responses of larvae to water temperature. Taken together, these data suggest that rearing longfin smelt at 15 °C would have detrimental effects and we suggest that cooler temperatures such as 9 or 12 °C may improve the culturing of the earliest life stages of longfin smelt.

Most of the water diversions on the Sacramento and San Joaquin Rivers (California, United States) and their tributaries are currently unscreened. These unscreened diversions are commonly used for irrigation and are potentially harmful to migrating and resident fishes. A large flume (test section: 18.29 m long, 3.05 m wide and 3.20 m high) was used to investigate the hydraulic fields near an unscreened water diversion under ecologically and hydraulically relevant diversion rates and channel flow characteristics. We investigated all combinations of three diversion rates (0.28, 0.42, and 0.57 m3/s) and three sweeping velocities (0.15, 0.38, and 0.61 m/s), with one additional test at 0.71 m3/s and 0.15 m/s. We measured the three-dimensional velocity field at seven cross sections near a diversion pipe and constructed regression equations of the observed maximum velocities near the pipe. Because the velocity components in three directions (longitudinal, transverse, and vertical) were significantly greater near the diversion pipe inlet compared with those farther from it, they cannot be neglected in the modeling and design of fish guidance and protection devices for diversion pipes. Our results should be of great value in quantifying the hydraulic fields that are formed around fish guidance devices to design more effective protection for fishes from entrainment into unscreened water-diversion pipes.

Scorpionfishes (family Scorpaenidae) occupy a wide range of thermal environments, yet little is known about the groupís thermal ecology. Recent invasions by red lionfish Pterois volitans and devil firefish P. miles into the Atlantic Ocean and Mediterranean Sea have stimulated interest in the ability of these species to withstand thermal extremes, but current temperature data are limited to cold tolerance estimates, or employ nonstandard techniques, making it difficult to compare values across studies. Using standardized methodologies, we quantified metabolic, physiological, and behavioral thermal responses of red lionfish from the Banda Sea, Sulawesi, Indonesia, and interpret the data in light of the groupís diversity and range of thermal habitats. Red lionfish acclimated at temperatures between 13 and 32∞C exhibit a thermal scope of nearly 25∞C. The resulting thermal niche is moderately large, allowing lionfish to exploit a wide range of thermal habitats, from mid-Atlantic coastal waters to hyperthermal tropical mangroves and tidepools. Although lionfish prefer temperatures of ~23∞C, they acclimate to the high temperature of a cycling thermoperiod. This feature, along with their comparatively low temperature sensitivity (metabolic temperature quotient

Pyrethroid pesticides are a class of insecticides found to have endocrine disrupting properties in vertebrates such as fishes and in human cell lines. Endocrine disrupting chemicals (EDCs) are environmental contaminants that mimic or alter the process of hormone signaling. In particular, EDCs that alter estrogen and androgen signaling pathways are of major concern for fishes because these EDCs may alter reproductive physiology, behavior, and ultimately sex ratio. Bifenthrin, a pyrethroid with escalating usage, is confirmed to disrupt estrogen signaling in several species of fish, including Menidia beryllina (inland silverside), an Atherinid recently established as a euryhaline model. Our main objective was to broadly assess the molecular and physiological responses of M. beryllina to the ng/L concentrations of bifenthrin typically found in the environment, with a focus on endocrine-related effects, and to discern links between different tiers of the biological hierarchy. As such, we evaluated the response of juvenile Menidia to bifenthrin using a Menidia-specific microarray, quantitative real-time polymerase chain reaction (qPCR) on specific endocrine-related genes of interest, and a Menidia-specific ELISA to the egg-coat protein choriogenin, to evaluate a multitude of molecular-level responses that would inform mechanisms of toxicity and any underlying causes of change at higher biological levels of organization. The sublethal nominal concentrations tested (0.5, 5 and 50ng/L) were chosen to represent the range of concentrations observed in the environment and to provide coverage of a variety of potential responses. We then employed a 21-day reproductive assay to evaluate reproductive responses to bifenthrin (at 0.5ng/L) in a separate group of adult M. beryllina. The microarray analysis indicated that bifenthrin influences a diverse suite of molecular pathways, from baseline metabolic processes to carcinogenesis. A more targeted examination of gene expression via qPCR demonstrated that bifenthrin downregulates a number of estrogen-related transcripts, particularly at the lowest exposure level. Choriogenin protein also decreased with exposure to increasing concentrations of bifenthrin, and adult M. beryllina exposed to 0.5ng/L had significantly reduced reproductive output (fertilized eggs per female). This reduction in fecundity is consistent with observed changes in endocrine-related gene expression and choriogenin production. Taken together, our results demonstrate that environmental concentrations of bifenthrin have potential to interfere with metabolic processes, endocrine signaling, and to decrease reproductive output.

We reared white sturgeon Acipenser transmontanus under laboratory conditions and found that a random-forest model containing scute counts and total length predicted age significantly better than total length alone. Scute counts are rapid, inexpensive and non-lethal meristics to gather in the field. This technique could improve age estimates of imperilled sturgeon populations.

A wealth of data exists on the ecophysiological constraints of many fishes, but much of this information is underutilized in recovery plans due to a lack of synthesis. We used the imperiled green sturgeon as an example of how a quantitative synthesis of physiological data can inform conservation plans., Reversing global declines in the abundance and diversity of fishes is dependent on science-based conservation solutions. A wealth of data exist on the ecophysiological constraints of many fishes, but much of this information is underutilized in recovery plans due to a lack of synthesis. Here, we used the imperiled green sturgeon (Acipenser medirostris) as an example of how a quantitative synthesis of physiological data can inform conservation plans, identify knowledge gaps and direct future research actions. We reviewed and extracted metadata from peer-reviewed papers on green sturgeon. A total of 105 publications were identified, spanning multiple disciplines, with the primary focus being conservation physiology (23.8%). A meta-analytical approach was chosen to summarize the mean effects of prominent stressors (elevated temperatures, salinity, low food availability and contaminants) on several physiological traits (growth, thermal tolerance, swimming performance and heat shock protein expression). All examined stressors significantly impaired green sturgeon growth, and additional stressor-specific costs were documented. These findings were then used to suggest several management actions, such as mitigating salt intrusion in nursery habitats and maintaining water temperatures within optimal ranges during peak spawning periods. Key data gaps were also identified; research efforts have been biased towards juvenile (38.1%) and adult (35.2%) life-history stages, and less data are available for early life-history stages (embryonic, 11.4%; yolk-sac larvae, 12.4%; and post yolk-sac larvae, 16.2%). Similarly, most data were collected from single-stressor studies (91.4%) and there is an urgent need to understand interactions among stressors as anthropogenic change is multi-variate and dynamic. Collectively, these findings provide an example of how meta-analytic reviews are a powerful tool to inform management actions, with the end goal of maximizing conservation gains from research efforts.

Salmonids are particularly susceptible to warming and hypoxia during development in redds. We reared Chinook salmon embryos and alevins under chronic warming and hypoxia to evaluate the effects of each stressor individually and their interaction. Warming and hypoxia affected survival, physiological performance and development with management implications for salmon conservation., Early life stages of salmonids are particularly vulnerable to warming and hypoxia, which are common stressors in hyporheic, gravel bed, rearing habitat (i.e. a ‘redd’). With the progression of global climate change, high temperatures and hypoxia may co-occur more frequently within redds, particularly for salmonid species at their southern range limit. Warming and hypoxia have competing effects on energy supply and demand, which can be detrimental to energy-limited early life stages. We examined how elevated temperature and hypoxia as individual and combined stressors affected the survival, physiological performance, growth, and development of Chinook salmon (Oncorhynchus tshawytscha). We reared late fall-run Chinook salmon from fertilization to the fry stage in a fully factorial design of two temperatures [10°C (ambient) and 14°C (warm)] and two oxygen levels [normoxia (100% air saturation, 10 mg O2/l) and hypoxia (50% saturation, 5.5 mg O2/l)]. Rearing in hypoxia significantly reduced hatching success, especially in combination with warming. Both warming and hypoxia improved acute thermal tolerance. While rearing in hypoxia improved tolerance to acute hypoxia stress, warming reduced hypoxia tolerance. Hypoxia-reared fish were smaller at hatch, but were able to reach similar sizes to the normoxia-reared fish by the fry stage. High temperature and normoxia resulted in the fastest rate of development while low temperature and hypoxia resulted in the slowest rate of development. Despite improved physiological tolerance to acute heat and hypoxia stress, hypoxia-reared embryos had reduced survival and growth, which could have larger population-level effects. These results suggest that both warming and hypoxia are important factors to address in conservation strategies for Chinook salmon.

Two populations of a declining western North American freshwater turtle—one coastal and one inland—were exposed to elevated water salinities of 10 ppt and 15 ppt over 2 weeks. Turtles from the coastal estuarine population had reduced feeding and drinking and maintained lower plasma osmolality levels than did those from inland., Sea-level rise, drought and water diversion can all lead to rapid salinization of freshwater habitats, especially in coastal areas. Increased water salinities can in turn alter the geographic distribution and ecology of freshwater species including turtles. The physiological consequences of salinization for freshwater turtles, however, are poorly known. Here, we compared the osmoregulatory response of two geographically separate populations of the freshwater Western Pond Turtle (Actinemys marmorata)—a species declining across its range in western North America—to three constant salinities: 0.4 ppt, 10 ppt and 15 ppt over 2 weeks. We found that turtles from a coastal estuarine marsh population regulated their plasma osmolality at lower levels than their conspecifics from an inland freshwater creek population 45 km away. Plasma osmolalities were consistently lower in estuarine marsh turtles than the freshwater creek turtles over the entire 2-week exposure to 10 ppt and 15 ppt water. Furthermore, estuarine marsh turtles maintained plasma osmolalities within 1 SD of their mean field osmolalities over the 2-week exposure, whereas freshwater creek turtles exceeded their field values within the first few days after exposure to elevated salinities. However, individuals from both populations exhibited body mass loss in 15 ppt water, with significantly greater loss in estuarine turtles. We speculate that the greater ability to osmoregulate by the estuarine marsh turtles may be explained by their reduced feeding and drinking in elevated salinities that was not exhibited by the freshwater creek population. However, due to mass loss in both populations, physiological and behavioural responses exhibited by estuarine marsh turtles may only be effective adaptations for short-term exposures to elevated salinities, such as those from tides and when traversing saline habitats, and are unlikely to be effective for long-term exposure to elevated salinity as is expected under sea-level rise.

Author(s): Rodgers, EM; Todgham, AE; Connon, RE; Fangue, NA | Abstract: Limited food availability and altered thermal regimes (e.g. cold water releases from dams) are two common stressors threatening the persistence of fishes inhabiting anthropogenically disturbed freshwater systems. Yet, the combined effects of these stressors remain poorly characterised. To remedy this, we examined the isolated and combined effects of low temperature exposure and food restriction on specific growth rate (SGR, % body mass/day) and upper thermal tolerance (critical thermal maxima, CTMax) in larval white sturgeon (Acipenser transmontanus [Acipenseridae], 32ndays post-hatch, body mass: 0.25n±n0.03ng, meann±nstandard deviation). A 2n×n2 factorial design was implemented with fish exposed to one of two ecologically-relevant acclimation temperatures (cold exposure: 11°C or a control temperature: 18°C) and one of two food restriction treatments designed to emulate observed declines in food availability (100% or 40% optimal feed rate) for 6nweeks (N: 3 replicate tanks/treatment, 50 fish/tank). Specific growth rate was affected by both low temperature exposure and food restriction in isolation; low temperature exposure reduced SGR by 56.5% and food restriction reduced SGR by 30.6%. Simultaneous exposure to low temperature and food restriction resulted in a greater but less than additive reduction in SGR (80.6%), indicating that the stressors interacted antagonistically. Critical thermal maxima were c. 2°C higher in 18°C-acclimated fish (CTMaxn=n30.7n±n0.4°C, meann±nstandard error) compared to 11°C-acclimated fish (CTMaxn=n28.6n±n0.2°C, meann±nstandard error); however, CTMax was independent of food restriction in both 11°C- and 18°C-acclimated fish. These data highlight the unpredictability of stressor interactions and may guide holistic conservation strategies, which target co-occurring stressors in freshwater habitats.

Thermal tolerance niche analyses have been used extensively to identify adaptive thermal tactics used by wholly aquatic fishes, however no study to date has quantified thermal niche characteristics of air-breathing fishes. We use standardized thermal methodologies to estimate temperature acclimation ranges, upper and lower acclimation response ratios, and thermal niche areas in common (Periophthalmus kalolo) and barred (Periophthalmus argentilineatus) mudskippers in air and water. Common and barred mudskippers had an upper chronic limit of 37.0 °C, and respective low chronic temperatures of 14.0 and 11.4 °C, resulting in acclimation scope values of 23.0 °C and 25.6 °C. Both fishes had moderately large thermal niches, with barred mudskipper expressing larger niche areas in both water and air than common mudskipper (676.6 and 704.2 °C2 compared to 641.6 and 646.5 °C2). Acclimation response ratios were relatively low, with fish gaining or losing between 0.10 and 0.43 °C of heat tolerance with each 1 °C change in acclimation temperature. Although intraspecific total niche areas remained largely unchanged between media (≤10%), both species showed a slight increase in heat tolerance but a notable upward shift in intrinsic tolerance when emerged. Media-dependent thermal niche adjustment is a unique, and thus far undescribed physiological adaptation that in combination with behavioral responses, allow mudskippers to thrive in some of the most austere thermal environments experienced by any fish.

Preferred water temperatures and acute temperature tolerance limits of two salmonids in California were assessed: juvenile Chinook salmon Oncorhynchus tshawytscha, a native anadromous species, and sub-adult brook trout Salvelinus fontinalis, an introduced game species. These two species preferred similar temperatures across an 18 h temperature preference experiment and showed similar critical thermal tolerance limits, suggesting a substantial thermal habitat overlap in the wild.

We tested Chinook smolt response to combinations of spectra and strobing frequencies emitted from an underwater LED light, designed to guide fish near water diversion infrastructure. Whilst strobing did not alter fish behaviour when compared to constant light, the red light had a repulsive effect during the day, but not at night., Exploiting species-specific behavioural responses of fish to light is an increasingly promising technique to reduce the entrainment or impingement of fish that results from the diversion of water for human activities, such as hydropower or irrigation. Whilst there is some evidence that white light can be an effective deterrent for Chinook salmon smolts, the results have been mixed. There is a need to test the response of fish to different spectra and strobing frequencies to improve deterrent performance. We tested the movement and spatial response of groups of four fish to combinations of light-emitting diode (LED) spectra (red, green, blue and white light) during the day and night, and strobing frequencies (constant and 2Hz) during the day, using innovative LED technology intended as a behavioural guidance device for use in the field. Whilst strobing did not alter fish behaviour when compared to constant light, the red light had a repulsive effect during the day, with fish under this treatment spending significantly less time in the half of the arena closest to the behavioural guidance device compared to both the control and blue light. Importantly, this effect disappeared at night, where there were no differences in movement and space use found between spectra. There was some evidence of a potential attractive response of fish to the blue and green light during the day. Under these light treatments, fish spent the highest amount of time closest to the behavioural guidance device. Further tests manipulating the light intensity in the different spectra are needed to verify the mechanistic determinants of the observed behaviours. Results are discussed in reference to the known spectral sensitivities of the cone and rod photopigments in these fish, and further experiments are suggested to better relate the work to mitigating the effects on fish of infrastructure used for hydropower and irrigation.

Juvenile Chinook Salmon Oncorhynchus tshawytscha traveling in river systems can become entrained by unscreened water diversions when they encounter inflow velocities that exceed their avoidance (i.e., swimming) ability. We tested the efficiency of three devices for deterring fish entrainment; the devices reduced the diversion's maximum inflow velocity by dispersing the inflow across a greater area so as to reduce fish entrainment without causing a decrease in water diversion rates. Tests were performed in a river simulation flume at a 0.15-m/s sweeping velocity in clear water conditions during the daytime and nighttime as well as in turbid water (daytime) conditions. Water was diverted at a rate of 0.57 m3/s through a 0.46-m-diameter pipe. The tested devices included (1) a widened box inlet (1.7 m long × 0.76 m wide × 0.76 m deep) with a trash rack mounted at its entrance (trash rack box), (2) a widened box inlet with a louver array mounted at the entrance (louver box), and (3) a 0.91-m-diameter c...

Research into the effects of contaminants on fishes is often conducted on well- studied model test species, whose responses may be different than those of endangered species. We developed an oligonucleotide microarray consisting of 12 595 genes to examine the effects of the pesticide permethrin on an endangered fish in California, USA, the delta smelt Hypomesus transpacificus. The microarray was used in combination with quantitative PCR (qPCR) assess- ments. We exposed larval delta smelt to permethrin for 96 h at concentrations of 0.69, 1.37, 2.56, 4.84, 12.88 and 24.94 µg l �1 , and compared the responses to a control group. The 96 h 50% lethal concentration (LC50) was 4.07 µg l �1 , which is lower than those reported for model test species and similar to other endangered species. With increasing exposure concentration, we detected the dif- ferential expression of 3342 microarray features with elevated expression of genes involved in protein degradation and apoptosis, and decreased expression of immune function genes. Func- tional analysis indicated that genes involved in protein degradation, immune function, an unfolded protein response, meta bolism and cell signaling cascades were affected by exposure to permethrin. Many of the gene responses in the 0.69 µg l �1 treatment group differed in their direc- tional change in expression from those at higher exposure concentrations, suggesting a potential mechanistic threshold of sub-lethal toxicity at concentrations below the lowest observed effect concentration (LOEC) of 2.56 µg l �1 . These results are consistent with non-monotonic response patterns to contaminants, and demonstrate the effects on a sensitive fish species of a widely used pyrethroid pesticide at concentrations below those that affect model test species.

Ibuprofen is one of the most commonly detected pharmaceuticals in wastewater effluent; however, the effects of ibuprofen on aquatic organisms are poorly understood. This study presents the transcriptome-wide response of the inland silverside, Menidia beryllina, to chronic exposure to ibuprofen. At the lowest exposure concentration (0.0115 mg/L), we detected a downregulation of many genes involved in skeletal development, aerobic respiration, and immune function. At the highest exposure concentration (1.15 mg/L), we detected increased expression of regulatory genes in the arachidonic acid metabolism pathway and several immune genes involved in an inflammatory response. Additionally, there was differential expression of genes involved in oxidative stress responses and a downregulation of genes involved in osmoregulation. This study provides useful information for monitoring the effects of this common wastewater effluent contaminant in the environment and for the generation of biomarkers of exposure to ibuprofen that may be transferable to other fish species.

There is growing recognition of the need to understand the mechanisms underlying organismal resilience (i.e. tolerance, acclimatization) to environmental change to support the conservation management of sensitive and economically important species. Here, we discuss how functional genomics can be used in conservation biology to provide a cellular-level understanding of organismal responses to environmental conditions. In particular, the integration of transcriptomics with physiological and ecological research is increasingly playing an important role in identifying functional physiological thresholds predictive of compensatory responses and detrimental outcomes, transforming the way we can study issues in conservation biology. Notably, with technological advances in RNA sequencing, transcriptome-wide approaches can now be applied to species where no prior genomic sequence information is available to develop species-specific tools and investigate sublethal impacts that can contribute to population declines over generations and undermine prospects for long-term conservation success. Here, we examine the use of transcriptomics as a means of determining organismal responses to environmental stressors and use key study examples of conservation concern in fishes to highlight the added value of transcriptome-wide data to the identification of functional response pathways. Finally, we discuss the gaps between the core science and policy frameworks and how thresholds identified through transcriptomic evaluations provide evidence that can be more readily used by resource managers.

© 2018 Elsevier Ltd Human-induced thermal variability can disrupt energy balance and performance in ectotherms; however, phenotypic plasticity may play a pivotal protective role. Ectotherm performance can be maintained in thermally heterogeneous habitats by reducing the thermal sensitivity of physiological processes and concomitant performance. We examined the capacity of juvenile green sturgeon (Acipenser medirostris) to respond to daily thermal variation. Juveniles (47 days post-hatch) were exposed to either stable (15 ± 0.5 °C) or variable (narrowly variable: 13–17 °C day−1or widely variable 11–21 °C day−1) thermoperiod treatments, with equivalent mean temperatures (15 ± 0.5 °C), for 21 days. Growth (relative growth rate, % body mass gain), upper thermal tolerance (critical thermal maxima, CTMax) and the thermal sensitivity of swimming performance (critical swimming speed, Ucrit) were assessed in fish from all treatments. Accelerated growth was observed in fish maintained under widely variable temperatures compared to narrowly variable and stable temperatures. No significant variation in CTMax was observed among thermoperiod treatments, suggesting all treatment groups acclimated to the mean temperature rather than daily maximums. The widely variable treatment induced a plastic response in swimming performance, where Ucritwas insensitive to temperature and performance was maintained across a widened thermal breadth. Maximum Ucritattained was similar among thermoperiod treatments, but performance was maximised at different test temperatures (stable: 4.62 ± 0.44 BL s−1at 15 °C; narrowly variable: 4.52 ± 0.23 BL s−1at 21 °C; widely variable: 3.90 ± 0.24 BL s−1at 11 °C, mean ± s.e.m.). In combination, these findings suggest juvenile A. medirostris are resilient to daily fluctuations in temperature, within the temperature range tested here.

The present study showed short-term elevations in cellular metabolism, alterations in behavior and susceptibility to predation in juvenile rockfish after acute acclimation to CO2-acidification and hypoxic conditions. Physiological and behavioral alterations were restored after 3 weeks suggesting that rockfish possess mechanisms to defend rapid changes in PCO2 and oxygen conditions., California’s coastal ecosystems are forecasted to undergo shifting ocean conditions due to climate change, some of which may negatively impact recreational and commercial fish populations. To understand if fish populations have the capacity to respond to multiple stressors, it is critical to examine interactive effects across multiple biological scales, from cellular metabolism to species interactions. This study examined the effects of CO2-acidification and hypoxia on two naturally co-occurring species, juvenile rockfish (genus Sebastes) and a known predator, cabezon (Scorpaenichthys marmoratus). Fishes were exposed to two PCO2 levels at two dissolved oxygen (DO) levels: ~600 (ambient) and ~1600 (high) μatm PCO2 and 8.0 (normoxic) and 4.5 mg l−1 DO (hypoxic) and assessments of cellular metabolism, prey behavior and predation mortality rates were quantified after 1 and 3 weeks. Physiologically, rockfish showed acute alterations in cellular metabolic enzyme activity after 1 week of acclimation to elevated PCO2 and hypoxia that were not evident in cabezon. Alterations in rockfish energy metabolism were driven by increases in anaerobic LDH activity, and adjustments in enzyme activity ratios of cytochrome c oxidase and citrate synthase and LDH:CS. Correlated changes in rockfish behavior were also apparent after 1 week of acclimation to elevated PCO2 and hypoxia. Exploration behavior increased in rockfish exposed to elevated PCO2 and spatial analysis of activity indicated short-term interference with anti-predator responses. Predation rate after 1 week increased with elevated PCO2; however, no mortality was observed under the multiple-stressor treatment suggesting negative effects on cabezon predators. Most noteworthy, metabolic and behavioral changes were moderately compensated after 3 weeks of acclimation, and predation mortality rates also decreased suggesting that these rockfish may be resilient to changes in environmental stressors predicted by climate models. Linking physiological and behavioral responses to multiple stressors is vital to understand impacts on populations and community dynamics.

A 10-week growth trial was performed to evaluate the effects of feeding rate on growth performance, nutrient partitioning, and to determine the optimum feeding rate for young-of-the-year white sturgeon. Three tanks with 30 fish per tank each were assigned to five feeding rates, 0.4–2.0% body weight per day (BW day−1). Weight gain significantly (P

Increases in atmospheric CO2 levels and associated ocean changes are expected to have dramatic impacts on marine ecosystems. Although the Southern Ocean is experiencing some of the fastest rates of change, few studies have explored how Antarctic fishes may be affected by co-occurring ocean changes, and even fewer have examined early life stages. To date, no studies have characterized potential trade-offs in physiology and behavior in response to projected multiple climate change stressors (ocean acidification and warming) on Antarctic fishes. We exposed juvenile emerald rockcod Trematomus bernacchii to three PCO2 treatments (~450, ~850, and ~1,200 μatm PCO2 ) at two temperatures (-1 or 2°C). After 2, 7, 14, and 28 days, metrics of physiological performance including cardiorespiratory function (heart rate [fH ] and ventilation rate [fV ]), metabolic rate (M˙O2), and cellular enzyme activity were measured. Behavioral responses, including scototaxis, activity, exploration, and escape response were assessed after 7 and 14 days. Elevated PCO2 independently had little impact on either physiology or behavior in juvenile rockcod, whereas warming resulted in significant changes across acclimation time. After 14 days, fH , fV and M˙O2 significantly increased with warming, but not with elevated PCO2 . Increased physiological costs were accompanied by behavioral alterations including increased dark zone preference up to 14%, reduced activity by 12%, as well as reduced escape time suggesting potential trade-offs in energetics. After 28 days, juvenile rockcod demonstrated a degree of temperature compensation as fV , M˙O2, and cellular metabolism significantly decreased following the peak at 14 days; however, temperature compensation was only evident in the absence of elevated PCO2 . Sustained increases in fV and M˙O2 after 28 days exposure to elevated PCO2 indicate additive (fV ) and synergistic (M˙O2) interactions occurred in combination with warming. Stressor-induced energetic trade-offs in physiology and behavior may be an important mechanism leading to vulnerability of Antarctic fishes to future ocean change.

Increases in atmospheric CO

Diadromy affords fish access to productive ecosystems, increasing growth and ultimately fitness, but it is unclear whether these advantages persist for species migrating within highly altered habitat. Here, we compared the foraging success of wild Delta Smelt-an endangered, zooplanktivorous, annual, semi-anadromous fish that is endemic to the highly altered San Francisco Estuary (SFE)-collected from freshwater (

Thermal acclimation responses in sheepshead minnow Cyprinodon variegatus were quantified by transfer and reciprocal transfer of fish between 11.1° and 18.2°C, between 18.2° and 25.7°C, or between 25.7° and 32.8°C. Changes in thermal acclimation status were assessed by posttransfer time series determinations of thermal tolerance (i.e., critical thermal minima and maxima). In general, heat tolerance gain and loss were complete in 20 and 25 d, respectively. Cold tolerance gain was achieved ca. 24 d posttransfer, but attrition was complete after only 12-13 d. Heat tolerance was gained asymmetrically, with fish acquiring approximately one-half of their accruable tolerance at the lowest transfer temperature. Likewise, the majority of cold tolerance accruement occurred during the warmest temperature transfer. Relatively uniform losses of heat and cold tolerance were seen in reciprocal transfers. Acclimation patterns were related to initial acclimation temperature, final acclimation temperature, and acclimation time and could be accurately modeled by multiple linear regression. The results suggest that sheepshead minnow accrue a majority of their high- or low-temperature tolerance early in the acclimation process well before potential damaging temperatures are likely to occur. This novel pattern of asymmetric heat and cold tolerance acquisition in sheepshead minnow may be a key adaptation for surviving rapid and unpredictable water temperature changes commonly encountered in their natural environment.

The discovery of two genetically distinct splittail populations within the San Francisco Estuary, one which spawns in the rivers of the Central Valley and another in the Petaluma and Napa Rivers of the San Pablo Bay, prompted the need to evaluate their degree of connectivity and relative sizes. We genotyped multiple age-0 splittail cohorts using 19 microsatellite loci to assess any spatiotemporal changes in the distribution of the two populations and estimate their effective population sizes (N e). Genetic population assignments demonstrated that while age-0 splittail are predominantly spatially segregated by populations, substantial geographical overlap may occur during years of high precipitation. However, despite this periodic range overlap, the original observed population structure has persisted for nearly a decade which has included a similarly wet year. This suggests that the present population structure will likely persist in the future due to strong philopatry and/or adaptive differences. We also found that N e estimates were generally lower for the San Pablo Bay population than the Central Valley population, which is consistent with the relative amount of habitat availability in the two locations and genetic diversity indices. The relative isolation and apparent lower N e of the San Pablo Bay splittail population indicates a higher vulnerability to extinction. A more consistent monitoring effort of splittail in the Petaluma and Napa Rivers may be necessary in order to better understand the future viability of this less studied population.

Establishing the optimum feeding rate (OFR; % body weight per day) for a cultured fish is a significant step toward the success of the aquaculture operation. Therefore, the objectives of this study were 1) the estimation of OFR for 19 datasets with different initial body weights by applying broken-line and quadratic regression models and 2) an investigation of potential OFR prediction models using 19 estimated OFRs from objective 1. Objective 1) Nineteen datasets were obtained from five published studies (14 datasets) and one unpublished study (5 datasets) which were carried out to evaluate the effects of feeding rate on growth performance in white sturgeon of initial body weights varying from 0.05 g to 764 g. Each dataset, containing feeding rate (independent variable) and specific growth rate (% body weight increase per day; dependent variable) was used to estimate OFR by one-slope straight broken-line, two-slope straight broken-line, quadratic broken-line, and quadratic models for each body weight class. Calculations of model selection criteria, including the adjusted coefficient of correlation, Akaike information criterion, and corrected Akaike information criterion were performed to compare model performance on OFR estimation for each dataset. Three models (two-slope straight broken-line, quadratic broken-line, and quadratic models) were considered acceptable for the estimation of OFR, and the three sets of estimated OFRs obtained by these models were used in objective 2. Objective 2) Several regression models, including polynomial models of order from 1 to 6, a simple exponential model with a constant, and a bi-exponential model, were fitted to each set of the 19 estimated OFRs against transformed initial body weights. A power function model was also fitted to the estimated OFRs against untransformed initial body weights. The model selection criteria for objective 2 were the same as those for objective 1. Overall model performance on the estimation of OFR for the 19 datasets shows that the quadratic broken-line model performed best, followed by the quadratic, two-slope straight broken-line, and one-slope straight broken-line models. Given the overall performance of model fitness to the sets of the OFR estimates, the bi-exponential regression model emerged as the most favorable one. As a result, the bi-exponential model equation. OFR % body weight per day = 0.00344 ± 0.0123 e − 5.684 ± 2.309 ln ( body weight ) + 8.695 ± 0.606 e − 0.549 ± 0.065 ln ( body weight ) obtained by fitting the estimated OFRs derived from the quadratic broken-line model analysis, can be used to predict the OFR for white sturgeon from about 0.05 g to 800 g.

Water diversions that extract fresh water for urban, industrial, and agricultural uses, as well as export to southern California, are prevalent throughout the Sacramento-San Joaquin watershed. Many water diversions are fitted with fish- exclusion screens designed to prevent fish from entrainment (i.e., being drawn in). The impact of fish screens on the behavior of migrating juvenile fishes remains largely unknown, especially for threatened species such as sturgeon. We placed individual juvenile green (Acipenser medirostris) or white (Acipenser transmontanus) sturgeon in a laboratory swimming flume in the presence of standard fish screens (2 mm bar spacing) at two field-relevant water velocities (20.4 ± 0.1 and 37.3 ± 0.3 cm·s−1). Fish were tested at 18 °C for 15 min during the day or night and in the presence of possible behavioral deterrents. Behavioral responses, including screen contacts, impingements, and time spent near screens were quantified. Green sturgeon contacted and impinged upon the screens twice as frequently as white sturgeon and also differed in how their behaviors were altered by water velocities and time of day. Our results are informative in developing effective management strategies to mitigate the impacts of water diversions on sturgeon populations and suggest that effective restoration strategies for both species should be considered separately. Resume : Les deviations de cours d'eau pour l'extraction d'eau douce pour des usages urbains, industriels ou agricoles et pour l'exportation vers le sud de la Californie sont repandues dans tout le bassin versant de Sacramento-San Joaquin. De nombreuses deviations de cours d'eau sont dotees de grilles d'exclusion des poissons concues pour prevenir l'entrainement de poissons (c.-a `-d. leur entree dans la deviation). L'impact de ces grilles sur le comportement des poissons migrateurs juveniles demeure largement meconnu, particulierement en ce qui concerne des especes menacees comme l'esturgeon. Nous avons place des esturgeons verts (Acipenser medirostris) ou blancs (Acipenser transmontanus) juveniles dans un canal de nage en laboratoire, en presence de grilles apoissons normales (espacement des barreaux de 2 mm) et adeux vitesses du courant pertinentes en ce qui concerne les conditions de terrain (20,4 ± 0,1 et 37,3 ± 0,3 cm·s−1). Les essais avec les poissons ont ete menes a ` 18 °C pendant 15 min durant le jour ou la nuit et en presence d'elements pouvant avoir un effet dissuasif. Les reactions comportementales, y compris les contacts avec les grilles, les collisions et le temps passe pres des grilles, ont ete quantifiees. Les contacts et les collisions des esturgeons verts avec les grilles etaient deux fois plus frequents que ceux des esturgeons blancs, et les modifications des comportements selon la vitesse de l'eau et le moment de la journee etaient egalement differentes pour les deux especes. Nos resultats fournissent de l'information utile pour l'elaboration de strategies de gestion efficaces visant aattenuer les impacts des deviations de cours d'eau sur les populations d'esturgeons et donnent apenser que des strategies de retablissement efficaces devraient etre examinees separement pour les deux especes. (Traduit par la Redaction)

California’s populations of hardhead Mylopharodon conocephalus, a species of special concern, have declined, possibly due to dam construction with consequent temperature and water-velocity changes, and the introduction of non-native species. Environmental temperature effects on this large (to 60 cm SL) cyprinid, and its swimming abilities, are not well known. To address these deficiencies and to assist conservation efforts, we measured resting and swimming metabolic rates of adult and juvenile hardhead acclimated to four temperatures (11, 16, 21, or 25 °C). Resting metabolic rates (RMR, mg O2 kg−0.79 h−1) generally increased with acclimation temperature, in adults and juveniles, with low to moderate thermal sensitivity (Q10 range: 1.33–2.04). Swimming metabolic rates, in Brett-style respirometers, of adults ranged from 209 to 1342 mg O2 kg−1 h−1 at velocities from 30 to 90 cm s−1, and juveniles ranged from 393 to 769 mg O2 kg−1 h−1 from 10 to 50 cm s−1. Adults were lethargic at 11 °C and juveniles frequently refused to swim at 11 and 16 °C, but all fish swam well at 21 and 25 °C. These results suggest that hardhead are well-suited for sustained aerobic activity over a range of flow velocities, at moderate temperatures (ca. 16 to 21 °C). However, juveniles, emerging in spring, may not be able to perform in cold water and/or high flow velocities, providing a caution to dam managers and regulators to avoid spring and summer operations whereby juveniles experience conditions outside of those occurring in unregulated rivers.

Delta smelt (Hypomesus transpacificus) is a critically endangered species endemic to the San Francisco Bay Delta (SFBD). Important for the conservation of this species is understanding the physiological and ecological impacts contributing to their population decline, and current studies lack information on embryonic development. Changes in patterns of salinity across the SFBD may be a particularly important environmental stressor contributing to the recruitment and survival of the species. Throughout their ontogeny, delta smelt may exhibit unique requirements and tolerances to environmental conditions including salinity. Here, we describe 22 stages of embryonic development of H. transpacificus that characterize early differentiation from the fertilized egg until hatching, allowing the identification of critical morphological features unique to this species. Additionally, we investigated aspects of physiological tolerance to environmental salinity during development. Embryos survived incubation at salinity treatments between 0.4 and 20 ppt, yet had lower hatch success at higher salinities. Prior to hatching, embryos exposed to higher salinities had increased osmolalities and reduced fractions of yolk implying that the elevated external salinity altered the physiology of the embryo and the environment internal to the chorion. Lastly, egg activation and fertilization appear to also be impacted by salinity. Altogether, we suggest that any potential tolerance to salinity during embryogenesis, a common feature in euryhaline teleost species, impacts life cycle transitions into, and out of, embryonic development. Results from this investigation should improve conservation and management practices of this species and further expand our understanding of the intimate relationship between an embryo and its environment.

Ultrasonic telemetry is a preferred method for fish-movement studies. Despite surgical tag implantation being the most common method for affixing tags, many studies lack tests addressing the assumption that tagging has no effect on fish performance or survival. The threatened, anadromous green sturgeon, Acipenser medirostris, has little documentation concerning its movements. We evaluated the effects of surgery and tag implantation in juveniles. We compared three groups: tagged fish with dummy transmitters implanted in the peritoneal cavity, sham fish that underwent surgery without tag implantation, and control fish that were handled and anesthetized but did not undergo surgery. We found no differences in growth or critical swimming velocity among groups. Photos of incisions were taken towards the beginning and at the end of the study to assess inflammation and to score each incision for closure and suture retention. Inflammation declined similarly for tagged and sham fish during the study. Ucrit was not related to the extent of inflammation or to post-surgery time. All fish showed healing during the study (ca. 140 day duration) and 10 % of tagged and sham fish showed signs of inflammation by the study end. These results suggest that current ultrasonic surgical tagging methods do not significantly affect the short-term growth or swimming performance of juvenile green sturgeon. Additionally, effects of surgery can be mitigated by minimizing the number of suture entry points and by using rapid-absorbing sutures.

Habitat perturbations, including dam construction with consequent temperature changes and the introduction of non-native species to California’s mid- to low-elevation streams, have negatively influenced some native fish populations’ historic distribution and abundance. Populations of hardhead, Mylopharodon conocephalus (Cyprinidae), have experienced such population declines, but environmental temperature effects on this large (to 60 cm SL), native species are poorly documented. We measured temperature effects on in vitro blood-oxygen affinity and equilibrium curve shape, key dynamics of the species’ oxygen-transport system, derived from blood collected from wild-caught hardhead. Over an 11–30 °C temperature range, the half-saturation value (P50, an inverse measure of affinity) increased with the temperature from 0.51 to 1.80 kPa for low-PCO2 (“arterial”) treatments and from 2.02 to 2.92 kPa for high-PCO2 (“venous”) treatments. The apparent heat of oxygenation (temperature effect) was higher at temperatures > (absolute value) 19 °C. Therefore, hardhead’s blood has a decreased ability to bind oxygen at its gills at temperatures ≥25 °C, compared to that at temperatures ≤19 °C. The hardhead’s Bohr factors (Ф), non-bicarbonate buffer values (β), nucleoside triphosphate (NTP) concentrations, blood oxygen capacities (CBO2), and mildly sigmoid-shaped oxygen equilibrium curves showed no relationship with temperature. Overall, their blood-oxygen equilibria suggest that hardhead can tolerate moderate hypoxia and temperature variations in its environment and that they have some capacity for sustained, high-aerobic activity.

To quantify the salinity preference of juvenile green sturgeon Acipenser medirostris, two groups of A. medirostris [140 days post hatch (dph); total length (LT): 38·0‐52·5 cm] were acclimated to either near fresh water (mean ±s.e. salinity = 3·2 ± 0·6) or full-strength salt water (34·1 ± 1·2) over 8 weeks. Following acclimation, these two were further divided into experimental and control groups, where experimental A. medirostris from both freshwater and saltwater acclimation were individually introduced (200‐220 dph) into a rectangular salinity-preference flume (maximum salinity gradient: 5‐33). Control A. medirostris were presented with only their acclimation water (i.e. fresh water or salt water) on both sides of the flume. It was demonstrated that A. medirostris acclimated to both salt water and fresh water spent a significantly greater amount of time on the side of the testing area with the highest salinity concentration (P < 0·05 and P < 0·001, respectively) while control A. medirostris spent an equal amount of time on each side of the flume. These findings indicate that juvenile A. medirostris are not only capable of detecting salt water within the first year of their lives but perhaps are actively seeking out saline environments as they move through a watershed. Establishing A. medirostris salinity preferences provides a better understanding of the early life history of this threatened species, shedding light on possible outmigration

Juvenile Chinook Salmon Oncorhynchus tshawytscha from California's Central Valley must pass thousands of unscreened water diversion pipes during their out-migration to the Pacific Ocean. The number of fish that become entrained into (drawn through) these diversions at different hydraulic and environmental conditions is currently unknown. We tested the ability of juvenile Chinook Salmon to avoid entrainment into a 0.46-m-diameter unscreened water diversion pipe while swimming in a large-river-simulation flume. Fish swimming experiments were conducted at 0.15, 0.38, and 0.61 m/s sweeping velocities (simulating the river current) with 0.42 and 0.57 m3/s water diversion rates during the day and at 0.15 and 0.61 m/s with a diversion rate of 0.57 m3/s in turbid water and during the night. The number of fish entrained during day experiments ranged from 0.8% (SE, 0.3) to 8.5% (SE, 0.3). The percentage of pipe passage events resulting in fish entrainment nearly doubled at the 0.57 m3/s water diversion rat...

As global change alters multiple environmental conditions, predicting species’ responses can be challenging without understanding how each environmental factor influences organismal performance. Approaches quantifying mechanistic relationships can greatly complement correlative field data, strengthening our abilities to forecast global change impacts. Substantial salinity increases are projected in the San Francisco Estuary, California, due to anthropogenic water diversion and climatic changes, where the critically endangered delta smelt (Hypomesus transpacificus) largely occurs in a low‐salinity zone (LSZ), despite their ability to tolerate a much broader salinity range. In this study, we combined molecular and organismal measures to quantify the physiological mechanisms and sublethal responses involved in coping with salinity changes. Delta smelt utilize a suite of conserved molecular mechanisms to rapidly adjust their osmoregulatory physiology in response to salinity changes in estuarine environments. However, these responses can be energetically expensive, and delta smelt body condition was reduced at high salinities. Thus, acclimating to salinities outside the LSZ could impose energetic costs that constrain delta smelt's ability to exploit these habitats. By integrating data across biological levels, we provide key insight into the mechanistic relationships contributing to phenotypic plasticity and distribution limitations and advance the understanding of the molecular osmoregulatory responses in nonmodel estuarine fishes.

Fishes in estuarine waters are frequently exposed to treated wastewater effluent, among numerous other sources of contaminants, yet the impacts of these anthropogenic chemicals are not well understood in these dynamic and important waterways. Inland silversides (Menidia beryllina) at an early stage of development [12days posthatch (dph)] were exposed to waters from two estuarine wastewater-treatment outfall locations in a tidal estuary, the Sacramento/San Joaquin Delta (California, USA) that had varied hydrology and input volumes. The genomic response caused by endocrine-disrupting compounds (EDCs) in these waters was determined using quantitative polymerase chain reaction on a suite of hormonally regulated genes. Relative androgenic and estrogenic activities of the waters were measured using CALUX reporter bioassays. The presence of bifenthrin, a pyrethroid pesticide and known EDC, as well as caffeine and the anti-inflammatory pharmaceutical ibuprofen, which were used as markers of wastewater effluent input, were determined using instrumental analysis. Detectable levels of bifenthrin (2.89ng L(-1)) were found on one of the sampling dates, and caffeine was found on all sampling dates, in water from the Boynton Slough. Neither compound was detected at the Carquinez Strait site, which has a much smaller effluent discharge input volume relative to the receiving water body size compared with Boynton Slough. Water samples from both sites incubated in the CALUX cell line induced estrogenic and androgenic activity in almost all instances, though the estrogenicity was relatively higher than the androgenicity. Changes in the abundance of mRNA transcripts of endocrine-responsive genes and indicators of general chemical stress were observed after a 96-h exposure to waters from both locations. The relative levels of endocrine response, changes in gene transcript abundance, and contaminant concentrations were greater in water from the Boynton Slough site despite those effluents undergoing a more advanced treatment process. The availability of a widely geographically distributed estuarine model species (M. beryllina) now allows for improved assessment of treated effluent impacts across brackish, estuarine, and marine environments.

© 2016 Elsevier Inc. The objective of the current study was to investigate the effects of feed restriction on whole-organism upper thermal tolerance and the heat shock response of green and white sturgeon to determine how changes in food amount might influence physiological performance of each species when faced with temperature stress. Two parallel feed restriction trials were carried out for juvenile green (202 g; 222-day post hatch: dph) and white sturgeon (205 g; 197-dph) to manipulate nutritional status at 12.5%, 25%, 50%, or 100% of optimum feeding rate (100% OFR were 1.6% and 1.8% body weight/day, respectively) for four weeks. Following the trials, the critical thermal maximum (CTMax, 0.3 °C/min) of sturgeon (N = 12/treatment/species) was assessed as an indicator of whole-organism upper thermal tolerance. To assess temperature sensitivity, sturgeon (N = 9/treatment/species) were acutely transferred to two temperature treatments (28 °C and 18 °C as a handling control) for 2 h followed by 2 h of recovery at 18 °C before being sacrificed, and gill, brain, and mucus sampled for measurements of 70-kDa heat shock protein levels (Hsc/Hsp70). Feeding rate had species-specific effects on CTMax in green and white sturgeon such that CTMax of green sturgeon decreased as the magnitude of feed restriction increased; whereas, CTMax of white sturgeon did not change with feed restriction. Elevated temperature (28 °C) and feed restriction increased Hsc/Hsp70 levels in the gill tissue of green sturgeon, while heat shock increased Hsc/Hsp70 levels in the mucus of white sturgeon. Our results suggest that green sturgeon may be more susceptible to temperature stress under food-limited conditions.