601 results on '"Neutral model"'
Search Results
52. Modeling of Buildings for Collaborative Design in a Virtual Environment
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Ren, Aizhu, Tang, Fangqin, Tzafestas, Spyros G., editor, Wang, Xiangyu, editor, and Tsai, Jerry Jen-Hung, editor
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- 2011
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53. Scaling Laws and Complexity in Fire Regimes
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McKenzie, Donald, Kennedy, Maureen C., Caldwell, M. M., editor, Heldmaier, G., editor, Jackson, R. B., editor, Lange, O. L., editor, Mooney, H. A., editor, Schulze, E.-D., editor, Sommer, U., editor, McKenzie, Donald, editor, Miller, Carol, editor, and Falk, Donald A., editor
- Published
- 2011
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- View/download PDF
54. Application of Geostatistics in Cancer Studies
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Goovaerts, Pierre, Atkinson, P. M., editor, and Lloyd, C. D., editor
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- 2010
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55. Quantifying the Strength of Natural Selection of a Motif Sequence
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Yeang, Chen-Hsiang, Hutchison, David, Series editor, Kanade, Takeo, Series editor, Kittler, Josef, Series editor, Kleinberg, Jon M., Series editor, Mattern, Friedemann, Series editor, Mitchell, John C., Series editor, Naor, Moni, Series editor, Nierstrasz, Oscar, Series editor, Pandu Rangan, C., Series editor, Steffen, Bernhard, Series editor, Sudan, Madhu, Series editor, Terzopoulos, Demetri, Series editor, Tygar, Doug, Series editor, Vardi, Moshe Y., Series editor, Weikum, Gerhard, Series editor, Istrail, Sorin, editor, Pevzner, Pavel, editor, Waterman, Michael S., editor, Moulton, Vincent, editor, and Singh, Mona, editor
- Published
- 2010
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56. Quantifying Variation in Landscape-Scale Behaviors: The Oldowan from Koobi Fora
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Braun, David R., Rogers, Michael J., Harris, John W., Walker, Steven J., Lycett, Stephen, editor, and Chauhan, Parth, editor
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- 2010
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57. Distinct responses of terrestrial and epiphytic ferns and lycophytes along an elevational gradient in Southern Brazil.
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Nervo, Michelle H., Andrade, Bianca O., Tornquist, Carlos G., Mazurana, Michael, Windisch, Paulo G., Overbeck, Gerhard E., and Woods, Kerry
- Subjects
- *
EPIPHYTES , *LYCOPHYTES , *BIODIVERSITY , *PLANT species , *FERNS - Abstract
Questions: What are the drivers that govern fern and lycophyte community composition across different elevation zones in the South Brazilian Atlantic Forest? Does explanatory power of the models increase when we consider substrate‐based life forms separately? Do terrestrial and epiphytic species respond similarly to environmental drivers? Study site: Four distinct elevation zones of the Atlantic Rain Forest sensu stricto in northeastern Rio Grande do Sul, Brazil. Method: Variation partitioning was used to investigate the role of climatic, edaphic and spatial variation on species composition at different spatial scales. We considered both the entire community and subsets with either only epiphytic or terrestrial species. Results: On the broad scale, environmental variables were the most important in shaping the fern and lycophyte community composition. Edaphic filters had a more important role for the terrestrial community, and climatic filters for epiphytic species. Considering epiphytic and terrestrial species separately increased the explanatory power of the models. Conclusions: Changes in community composition of ferns and lycophytes along an elevational gradient in the South Brazilian Atlantic Forest are primarily driven by niche processes. Ferns and lycophytes found on different substrates (epiphytic vs terrestrial species) show distinct responses to environmental factors and thus should be considered separately in ecological studies. Our study shows that changes in community composition of ferns and lycophytes along an elevational gradient are primarily driven by niche processes. Importantly, epiphytic and terrestrial species showed distinct responses to environmental factors. These distinct functional groups should thus be considered separately in studies on community response to environmental variation. [ABSTRACT FROM AUTHOR]
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- 2019
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58. Response of host–bacterial colonization in shrimp to developmental stage, environment and disease.
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Xiong, Jinbo, Dai, Wenfang, Qiu, Qiongfen, Zhu, Jinyong, Yang, Wen, and Li, Chenghua
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- *
SOCIAL host liability , *STOCHASTIC processes , *GENETIC drift , *PATHOGENIC microorganisms , *MICROBIAL invasiveness - Abstract
Abstract: The host‐associated microbiota is increasingly recognized to facilitate host fitness, but the understanding of the underlying ecological processes that govern the host–bacterial colonization over development and, particularly, under disease remains scarce. Here, we tracked the gut microbiota of shrimp over developmental stages and in response to disease. The stage‐specific gut microbiotas contributed parallel changes to the predicted functions, while shrimp disease decoupled this intimate association. After ruling out the age‐discriminatory taxa, we identified key features indicative of shrimp health status. Structural equation modelling revealed that variations in rearing water led to significant changes in bacterioplankton communities, which subsequently affected the shrimp gut microbiota. However, shrimp gut microbiotas are not directly mirrored by the changes in rearing bacterioplankton communities. A neutral model analysis showed that the stochastic processes that govern gut microbiota tended to become more important as healthy shrimp aged, with 37.5% stochasticity in larvae linearly increasing to 60.4% in adults. However, this defined trend was skewed when disease occurred. This departure was attributed to the uncontrolled growth of two candidate pathogens (over‐represented taxa). The co‐occurrence patterns provided novel clues on how the gut commensals interact with candidate pathogens in sustaining shrimp health. Collectively, these findings offer updated insight into the ecological processes that govern the host–bacterial colonization in shrimp and provide a pathological understanding of polymicrobial infections. [ABSTRACT FROM AUTHOR]
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- 2018
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59. Detecting wholesale copying in cultural evolution.
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Morin, Olivier and Miton, Helena
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SOCIAL evolution ,COMPUTER science ,DATA transmission systems ,COPYING ,MUTATION statistics - Abstract
A cultural practice can spread because it is transmitted with high fidelity, but also because biased transformation leads to its reinvention. The respective effect of these two mechanisms, however, may only be quantified if we can measure and detect high-fidelity transmission. This paper proposes wholesale copying, the reproduction of a set of elements as a set, as an operational definition. Using two corpus of heraldic designs (total n = 13,453), we apply information-theoretic tools to detect cases of wholesale copying and gauge their incidence. Heraldic designs are composed according to rigorous combinatorial rules. Wholesale copying causes the frequency of a design to increase out of proportion with the frequency of the motif and tinctures that make it up. Comparing the frequency of designs with that of their component motifs and tinctures, we show that the amount of information carried by a design tracks its inheritance along family lines. A model predicting the frequency of heraldic designs based solely on the frequency of their component parts systematically outperforms one that assumes a mix of wholesale copying and random mutation (with realistic mutation rates). These findings are consistent with low but non-null incidences of wholesale copying in the diffusion of heraldic designs. [ABSTRACT FROM AUTHOR]
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- 2018
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60. Forager Mobility and Lithic Discard Probability Similarly Affect the Distance of Raw Material Discard from Source
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Sam C. Lin and L. S. Premo
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Stone tool ,Archeology ,History ,Source data ,Computer science ,Museology ,Equifinality ,engineering.material ,Raw material ,Spatial distribution ,Outcome (probability) ,Lithic technology ,Arts and Humanities (miscellaneous) ,Statistics ,engineering ,Neutral model - Abstract
The neutral model of stone procurement developed by Brantingham (2003, 2006) provides a formal means to investigate the formation of lithic discard patterning under changing forager mobility conditions. This study modifies Brantingham's (2006) Lévy walk model to examine the influence of discard probability on the spatial distribution of raw material abundance. The model outcome shows that forager movement and tool discard probability have similar effects on the simulated patterns of raw material transport, so it is difficult—if not impossible—to differentiate the respective influence of the two factors from distance to source distributions alone. This finding of equifinality complicates the task of interpretating hominin mobility from archaeological distance to source data, particularly in settings such as the Middle-Upper Paleolithic transition, which is marked by an important reorganization in hominin lithic technology that may have affected stone tool discard probability.
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- 2021
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61. Comparing spatial diversification and meta-population models in the Indo-Australian Archipelago
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Loïc Chalmandrier, Camille Albouy, Patrice Descombes, Brody Sandel, Soren Faurby, Jens-Christian Svenning, Niklaus E. Zimmermann, and Loïc Pellissier
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allopatric speciation ,continental drift ,dispersal ,diversification ,meta-population model ,neutral model ,Science - Abstract
Reconstructing the processes that have shaped the emergence of biodiversity gradients is critical to understand the dynamics of diversification of life on Earth. Islands have traditionally been used as model systems to unravel the processes shaping biological diversity. MacArthur and Wilson's island biogeographic model predicts diversity to be based on dynamic interactions between colonization and extinction rates, while treating islands themselves as geologically static entities. The current spatial configuration of islands should influence meta-population dynamics, but long-term geological changes within archipelagos are also expected to have shaped island biodiversity, in part by driving diversification. Here, we compare two mechanistic models providing inferences on species richness at a biogeographic scale: a mechanistic spatial-temporal model of species diversification and a spatial meta-population model. While the meta-population model operates over a static landscape, the diversification model is driven by changes in the size and spatial configuration of islands through time. We compare the inferences of both models to floristic diversity patterns among land patches of the Indo-Australian Archipelago. Simulation results from the diversification model better matched observed diversity than a meta-population model constrained only by the contemporary landscape. The diversification model suggests that the dynamic re-positioning of islands promoting land disconnection and reconnection induced an accumulation of particularly high species diversity on Borneo, which is central within the island network. By contrast, the meta-population model predicts a higher diversity on the mainlands, which is less compatible with empirical data. Our analyses highlight that, by comparing models with contrasting assumptions, we can pinpoint the processes that are most compatible with extant biodiversity patterns.
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- 2018
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62. New Methods for Detecting Lineage-Specific Selection
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Siepel, Adam, Pollard, Katherine S., Haussler, David, Hutchison, David, editor, Kanade, Takeo, editor, Kittler, Josef, editor, Kleinberg, Jon M., editor, Mattern, Friedemann, editor, Mitchell, John C., editor, Naor, Moni, editor, Nierstrasz, Oscar, editor, Pandu Rangan, C., editor, Steffen, Bernhard, editor, Sudan, Madhu, editor, Terzopoulos, Demetri, editor, Tygar, Dough, editor, Vardi, Moshe Y., editor, Weikum, Gerhard, editor, Istrail, Sorin, editor, Pevzner, Pavel, editor, Waterman, Michael, editor, Apostolico, Alberto, editor, Guerra, Concettina, editor, and Pevzner, Pavel A., editor
- Published
- 2006
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63. Patterns and Processes in Marine Microeukaryotic Community Biogeography from Xiamen Coastal Waters and Intertidal Sediments, Southeast China
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Weidong Chen, Yongbo Pan, Lingyu Yu, Jun Yang, and Wenjing Zhang
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biogeography ,community assembly ,plankton ,benthos ,variation partitioning analysis ,neutral model ,Microbiology ,QR1-502 - Abstract
Microeukaryotes play key roles in the structure and functioning of marine ecosystems. Little is known about the relative importance of the processes that drive planktonic and benthic microeukaryotic biogeography in subtropical offshore areas. This study compares the microeukaryotic community compositions (MCCs) from offshore waters (n = 12) and intertidal sediments (n = 12) around Xiamen Island, southern China, using high-throughput sequencing of 18S rDNA. This work further quantifies the relative contributions of spatial and environmental variables on the distribution of marine MCCs (including total, dominant, rare and conditionally rare taxa). Our results showed that planktonic and benthic MCCs were significantly different, and the benthic richness (6627 OTUs) was much higher than that for plankton (4044 OTUs) with the same sequencing effort. Further, we found that benthic MCCs exhibited a significant distance-decay relationship, whereas the planktonic communities did not. After removing two unique sites (N2 and N3), however, 72% variation in planktonic community was explained well by stochastic processes. More importantly, both the environmental and spatial factors played significant roles in influencing the biogeography of total and dominant planktonic and benthic microeukaryotic communities, although their relative effects on these community variations were different. However, a high proportion of unexplained variation in the rare taxa (78.1–97.4%) and conditionally rare taxa (49.0–81.0%) indicated that more complex mechanisms may influence the assembly of the rare subcommunity. These results demonstrate that patterns and processes in marine microeukaryotic community assembly differ among the different habitats (coastal water vs. intertidal sediment) and different communities (total, dominant, rare and conditionally rare microeukaryotes), and provide novel insight on the microeukaryotic biogeography and ecological mechanisms in coastal waters and intertidal sediments at local scale.
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- 2017
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64. Detecting Hitchhiking from Patterns of DNA Polymorphism
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Fay, Justin C., Wu, Chung-I, and Nurminsky, Dmitry, editor
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- 2005
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65. Detecting Selective Sweeps with Haplotype Tests : Hitchhiking and Haplotype Tests
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Depaulis, Frantz, Mousset, Sylvain, Veuille, Michel, and Nurminsky, Dmitry, editor
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- 2005
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66. Population Genetics of Molecular Evolution
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Bustamante, Carlos D., Dietz, K., editor, Gail, M., editor, Krickeberg, K., editor, Tsiatis, A., editor, Samet, J., editor, and Nielsen, Rasmus
- Published
- 2005
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67. Detection of spatial clusters and outliers in cancer rates using geostatistical filters and spatial neutral models
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Goovaerts, P., Renard, Philippe, Demougeot-Renard, Hélène, and Froidevaux, Roland
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- 2005
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68. Neutral model-based interfacing of 3D design to support collaborative project management in the process plant industry
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Duhwan Mun, Chiho Noh, Jinpyo Park, Hyunoh Lee, Seyun Kim, Byung Chul Kim, and Soonhung Han
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0209 industrial biotechnology ,business.industry ,Computer science ,Process plant ,Computational Mechanics ,020207 software engineering ,02 engineering and technology ,Computer Graphics and Computer-Aided Design ,Human-Computer Interaction ,Computational Mathematics ,020901 industrial engineering & automation ,Interfacing ,Modeling and Simulation ,0202 electrical engineering, electronic engineering, information engineering ,Systems engineering ,Project management ,business ,Engineering (miscellaneous) ,3d design ,Neutral model - Abstract
The three-dimensional (3D) design data employed in a process plant construction project are generated during both the basic design and detailed design stages and are used for various purposes throughout the life cycle of the project. After the design stage, 3D design data are converted to a lightweight 3D format and utilized to support procurement, construction, and audit work in a collaborative project management system. However, significant time and cost are incurred when separate interfaces to convert design data are developed for each plant 3D computer-aided design (CAD) system. As an alternative, a method exists to integrate an interface using a neutral model. After translating the 3D input design data for the plant 3D CAD system to a neutral format, this study proposes an interface for use in collaborative project management by converting the data into a lightweight 3D model. In addition, detailed techniques for implementing the proposed interface are described. To verify the validity of the proposed neutral model-based 3D design data interface, translation, inspection, and lightweighting experiments are performed using 3D design data for a synthesized natural gas production plant project.
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- 2021
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69. Neutral Landscape Models
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Gardner, Robert H., Walters, Steven, Gergel, Sarah E., editor, and Turner, Monica G., editor
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- 2002
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70. Collaborative Simulation by Reuse of COTS Simulators with a Reflexive XML Middleware1
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Blanc, Mathieu, Costantini, Fabien, Dubois, Sébastien, Forget, Manuel, Francillon, Olivier, Toinard, Christian, Goos, Gerhard, editor, Hartmanis, Juris, editor, van Leeuwen, Jan, editor, Bruel, Jean-Michel, editor, and Bellahsene, Zohra, editor
- Published
- 2002
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71. New Methods to Generate Neutral Images for Spatial Pattern Recognition
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Liebisch, Niels, Jacquez, 1Geoffrey, Goovaerts, Pierre, Kaufmann, Andreas, Goos, Gerhard, editor, Hartmanis, Juris, editor, van Leeuwen, Jan, editor, Egenhofer, Max J., editor, and Mark, David M., editor
- Published
- 2002
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72. Landscape Analysis
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Ingegnoli, Vittorio and Ingegnoli, Vittorio
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- 2002
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73. Applying Brantingham’s Neutral Model of Stone Raw Material Procurement to the Pinnacle Point Middle Stone Age Record, Western Cape, South Africa
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Oestmo, Simen
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Neutral Model ,Procurement ,Middle Pleistocene ,Late Pleistocene ,Lithics ,Raw Material Procurement ,South African Middle Stone Age ,Stone tool technology ,Agent-based Modeling ,African Middle Stone Age ,Paleoenvironment - Abstract
Application of Brantingham's (2003) neutral model of stone tool raw material procurement to a real landscape with real stone source locations, and the location of a known archaeological site.
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- 2022
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74. Medium shapes the microbial community of water filters with implications for effluent quality.
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Vignola, Marta, Werner, David, Wade, Matthew J., Meynet, Paola, and Davenport, Russell J.
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- *
DRINKING water quality , *MICROBIAL communities , *WATER filters , *ACTIVATED carbon , *FLOW cytometry - Abstract
Little is known about the forces that determine the assembly of diverse bacterial communities inhabiting drinking water treatment filters and how this affects drinking water quality. Two contrasting ecological theories can help to understand how natural microbial communities assemble; niche theory and neutral theory, where environmental deterministic factors or stochastic factors predominate respectively. This study investigates the development of the microbial community on two common contrasting filter materials (quartz sand and granular activated carbon-GAC), to elucidate the main factors governing their assembly, through the evaluation of environmental (i.e. filter medium type) and stochastic forces (random deaths, births and immigration). Laboratory-scale filter columns were used to mimic a rapid gravity filter; the microbiome of the filter materials, and of the filter influent and effluent, was characterised using next generation 16S rRNA gene amplicon sequencing and flow-cytometry. Chemical parameters (i.e. dissolved organic carbon, trihalomethanes formation) were also monitored to assess the final effluent quality. The filter communities seemed to be strongly assembled by selection rather than neutral processes, with only 28% of those OTUs shared with the source water detected on the filter medium following predictions using a neutral community model. GAC hosted a phylogenetically more diverse community than sand. The two filter media communities seeded the effluent water, triggering differences in both water quality and community composition of the effluents. Overall, GAC proved to be better than sand in controlling microbial growth, by promoting higher bacterial decay rates and hosting less bacterial cells, and showed better performance for putative pathogen control by leaking less Legionella cells into the effluent water. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
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75. Temporal effects of disturbance on community composition in simulated stage-structured plant communities.
- Author
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Wang, Youshi, Wen, Shujun, Farnon Ellwood, M. D., Miller, Adam D., and Chu, Chengjin
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BIOTIC communities ,SPECIES diversity ,CONSERVATION of natural resources ,SEEDLINGS ,GRAZING ,BIOLOGICAL evolution - Abstract
In an era of global environmental change, understanding how disturbance affects the dynamics of ecological communities is crucial. However, few studies have theoretically explored the potential influence of disturbance including both intensity and frequency on compositional change over time in communities with stage structure. A spatially explicit, individual-based model was constructed incorporating the various demographic responses to disturbance of plants at two different growth stages: seedlings and adults. In the model, we assumed that individuals within each stage were demographically equivalent (neutral) but differed between stages. We simulated a common phenomenon that seedlings suffered more from disturbance such as grazing and fire than adults. We showed how stage-structured communities of seedlings and adults responded to disturbance with various levels of disturbance frequency and intensity. In 'undisturbed' simulations, the relationship between average species abundance (defined here as the total number of individuals divided by species richness) and community composition turnover (measured by the Bray-Curtis similarity index) was asymptotic. However, in strongly 'disturbed' simulations with the between-disturbance intervals greater than one, this relationship became unimodal. Stage-dependent response to disturbance underlay the above discrepancy between undisturbed and disturbed communities. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
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76. Individuating population lineages: a new genealogical criterion.
- Author
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Sterner, Beckett
- Subjects
- *
ASEXUAL reproduction , *REPRODUCTION , *APOGAMY (Botany) , *ANIMAL sexual behavior - Abstract
Contemporary biology has inherited two key assumptions from the Modern Synthesis about the nature of population lineages: sexual reproduction is the exemplar for how individuals in population lineages inherit traits from their parents, and random mating is the exemplar for reproductive interaction. While these assumptions have been extremely fruitful for a number of fields, such as population genetics and phylogenetics, they are increasingly unviable for studying the full diversity and evolution of life. I introduce the 'mixture' account of population lineages that escapes these assumptions by (1) dissolving the Modern Synthesis's sharp line separating reproduction and development and (2) characterizing reproductive integration in population lineages by the ephemerality of isolated subgroups rather than random mating. The mixture account provides a single criterion for reproductive integration that accommodates both sexual and asexual reproduction, unifying their treatment under Kevin de Queiroz's generalized lineage concept of species. The account also provides a new basis for empirically assessing the effect of random mating as an idealization on the empirical adequacy of population genetic models. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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77. A Neutral Model for the Evolution of Diet Breadth.
- Author
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Forister, Matthew L. and Jenkins, Stephen H.
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- *
BIOLOGICAL evolution , *INSECT evolution , *HERBIVORES , *INSECT food , *NATURAL selection , *SIMULATION methods & models - Abstract
Variation in diet breadth among organisms is a pervasive feature of the natural world that has resisted general explanation. In particular, trade-offs in the ability to use one resource at the expense of another have been expected but rarely detected. We explore a spatial model for the evolution of specialization, motivated by studies of plant-feeding insects. The model is neutral with respect to the causes and consequences of diet breadth: the number of hosts utilized is not constrained by trade-offs, and specialization or generalization does not confer a direct advantage with respect to the persistence of populations or the probability of diversification. We find that diet breadth evolves in ways that resemble reports from natural communities. Simulated communities are dominated by specialized species, with a predictable but less species-rich component of generalized taxa. These results raise the possibility that specialization might be a consequence of stochastic diversification dynamics acting on spatially segregated consumer-resource associations rather than a trait either favored or constrained directly by natural selection. Finally, our model generates hypotheses for global patterns of herbivore diet breadth, including a positive effect of host richness and a negative effect of evenness in host plant abundance on the number of specialized taxa. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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78. Wolf in sheep's clothing: Model misspecification undermines tests of the neutral theory for life histories.
- Author
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Authier, Matthieu, Aubry, Lise M., and Cam, Emmanuelle
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- *
LIFE history theory , *ECOLOGICAL heterogeneity , *POPULATION biology , *SPECIES distribution , *PARAMETER estimation - Abstract
Understanding the processes behind change in reproductive state along life-history trajectories is a salient research program in evolutionary ecology. Two processes, state dependence and heterogeneity, can drive the dynamics of change among states. Both processes can operate simultaneously, begging the difficult question of how to tease them apart in practice. The Neutral Theory for Life Histories ( NTLH) holds that the bulk of variations in life-history trajectories is due to state dependence and is hence neutral: Once previous (breeding) state is taken into account, variations are mostly random. Lifetime reproductive success ( LRS), the number of descendants produced over an individual's reproductive life span, has been used to infer support for NTLH in natura. Support stemmed from accurate prediction of the population-level distribution of LRS with parameters estimated from a state dependence model. We show with Monte Carlo simulations that the current reliance of NTLH on LRS prediction in a null hypothesis framework easily leads to selecting a misspecified model, biased estimates and flawed inferences. Support for the NTLH can be spurious because of a systematic positive bias in estimated state dependence when heterogeneity is present in the data but ignored in the analysis. This bias can lead to spurious positive covariance between fitness components when there is in fact an underlying trade-off. Furthermore, neutrality implied by NTLH needs a clarification because of a probable disjunction between its common understanding by evolutionary ecologists and its translation into statistical models of life-history trajectories. Irrespective of what neutrality entails, testing hypotheses about the dynamics of change among states in life histories requires a multimodel framework because state dependence and heterogeneity can easily be mistaken for each other. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
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79. Quantifying Stochastic Processes in Shaping Dissolved Organic Matter Pool with High-Resolution Mass Spectrometry.
- Author
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She Z, Wang J, Wang S, He C, Jiang Z, Pan X, Shi Q, and Yue Z
- Subjects
- Organic Chemicals analysis, Mass Spectrometry, Lakes analysis, Lakes chemistry, Rivers chemistry, Stochastic Processes, Spectrometry, Fluorescence, Dissolved Organic Matter, Ecosystem
- Abstract
Natural dissolved organic matter (DOM) represents a ubiquitous molecular mixture, progressively characterized by spatiotemporal resolution. However, an inadequate comprehension of DOM molecular dynamics, especially the stochastic processes involved, hinders carbon cycling predictions. This study employs ecological principles to introduce a neutral theory to elucidate the fundamental processes involving molecular generation, degradation, and migration. A neutral model is thus formulated to assess the probability distribution of DOM molecules, whose frequencies and abundances follow a β-distribution relationship. The neutral model is subsequently validated with high-resolution mass spectrometry (HRMS) data from various waterbodies, including lakes, rivers, and seas. The model fitting highlights the prevalence of molecular neutral distribution and quantifies the stochasticity within DOM molecular dynamics. Furthermore, the model identifies deviations of HRMS observations from neutral expectations in photochemical and microbial experiments, revealing nonrandom molecular transformations. The ecological null model further validates the neutral modeling results, demonstrating that photodegradation reduces molecular stochastic dynamics at the surface of an acidic pit lake, while random distribution intensifies at the river surface compared with the porewater. Taken together, the DOM molecular neutral model emphasizes the significance of stochastic processes in shaping a natural DOM pool, offering a potential theoretical framework for DOM molecular dynamics in aquatic and other ecosystems.
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- 2023
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80. Anticipating Scientific Revolutions in Evolutionary Genetics
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Hey, Jody, Clegg, Michael T., editor, Hecht, Max K., editor, and Macintyre, Ross J., editor
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- 2000
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81. Evolutionary dynamics of the cryptocurrency market
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Abeer ElBahrawy, Laura Alessandretti, Anne Kandler, Romualdo Pastor-Satorras, and Andrea Baronchelli
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cryptocurrency market ,bitcoin ,evolutionary modelling ,neutral model ,complex systems ,Science - Abstract
The cryptocurrency market surpassed the barrier of $100 billion market capitalization in June 2017, after months of steady growth. Despite its increasing relevance in the financial world, a comprehensive analysis of the whole system is still lacking, as most studies have focused exclusively on the behaviour of one (Bitcoin) or few cryptocurrencies. Here, we consider the history of the entire market and analyse the behaviour of 1469 cryptocurrencies introduced between April 2013 and May 2017. We reveal that, while new cryptocurrencies appear and disappear continuously and their market capitalization is increasing (super-)exponentially, several statistical properties of the market have been stable for years. These include the number of active cryptocurrencies, market share distribution and the turnover of cryptocurrencies. Adopting an ecological perspective, we show that the so-called neutral model of evolution is able to reproduce a number of key empirical observations, despite its simplicity and the assumption of no selective advantage of one cryptocurrency over another. Our results shed light on the properties of the cryptocurrency market and establish a first formal link between ecological modelling and the study of this growing system. We anticipate they will spark further research in this direction.
- Published
- 2017
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82. RULE: Map Generation and a Spatial Analysis Program
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Gardner, Robert H., Klopatek, Jeffrey M., editor, and Gardner, Robert H., editor
- Published
- 1999
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83. Vertebrate hosts as islands: dynamics of selection, immigration, loss, persistence and potential function of bacteria on salamander skin
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Andrew Howard Loudon, Arvind eVenkataraman, William eVanTreuren, Douglas eWoodhams, Laura Wegener Parfrey, Valerie eMcKenzie, Rob eKnight, Thomas eSchmidt, and Reid eHarris
- Subjects
Symbiosis ,Antifungal ,island biogeography ,Batrachochytrium dendrobatidis ,host-associated microbial communities ,Neutral model ,Microbiology ,QR1-502 - Abstract
Skin bacterial communities can protect amphibians from a fungal pathogen; however, little is known about how these communities are maintained. We used a neutral model of community ecology to identify bacteria that are maintained on salamanders by selection or by dispersal from a bacterial reservoir (soil) and ecological drift. We found that 75% (9/12) of bacteria that were consistent with positive selection, < 1% of bacteria that were consistent with random dispersal and none of the bacteria that were consistent under negative selection had a 97% or greater match to antifungal isolates. Additionally we performed an experiment where salamanders were either provided or denied a bacterial reservoir and estimated immigration and loss (emigration and local extinction) rates of bacteria on salamanders in both treatments. Loss was strongly related to bacterial richness, suggesting competition is important for structuring the community. Bacteria closely related to antifungal isolates were more likely to persist on salamanders with or without a bacterial reservoir, suggesting they had a competitive advantage. Furthermore, over-represented and under-represented OTUs had similar persistence on salamanders when a bacterial reservoir was present. However, under-represented OTUs were less likely to persist in the absence of a bacterial reservoir, suggesting that the over-represented and under-represented bacteria are selected for or against on salamanders through time. Our findings from the neutral model, migration and persistence analyses show that bacteria that exhibit a high similarity to antifungal isolates persist on salamanders, which likely protect hosts against pathogens and improve fitness. This research is one of the first to apply ecological theory to investigate assembly of host associated-bacterial communities, which can provide insights for probiotic bioaugmentation as a conservation strategy against disease.
- Published
- 2016
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84. Profiling Airborne Microbiota in Mechanically Ventilated Buildings Across Seasons in Hong Kong Reveals Higher Metabolic Activity in Low-Abundance Bacteria
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Yonghang Lai, You Zhou, Xinzhao Tong, Marcus H. Y. Leung, Ian Ridley, Jimmy C. K. Tong, and Patrick K. H. Lee
- Subjects
Bacteria ,Ecology ,Indoor air ,Microbiota ,General Chemistry ,Ribosomal RNA ,Biology ,16S ribosomal RNA ,biology.organism_classification ,Respiration, Artificial ,RNA, Ribosomal, 16S ,Hong Kong ,Environmental Chemistry ,Biological dispersal ,Seasons ,Metabolic activity ,Neutral model - Abstract
Metabolically active bacteria within built environments are poorly understood. This study aims to investigate the active airborne bacterial microbiota and compare the total and active microbiota in eight mechanically ventilated buildings over four consecutive seasons using the 16S rRNA gene (rDNA) and the 16S rRNA (rRNA), respectively. The relative abundances of the taxa of presumptive occupants and environmental origins were significantly different between the active and total microbiota. The Sloan neutral model suggested that ecological drift and random dispersal played a smaller role in the assembly of the active microbiota than the total microbiota. The seasonal nature of the active microbiota was consistent with that of the total microbiota in both indoor and outdoor environments, while only the indoor environment was significantly affected by geography. The relative abundances of the active and total taxa were positively correlated, suggesting that the high-abundance members were also the greatest contributors to the community-level metabolic activity. Based on the rRNA/rDNA ratio, the low-abundance members consistently had a higher taxon-level metabolic activity than the high-abundance members over seasons, suggesting that the low-abundance members may have the ability to survive and thrive in the indoor environment and their impact on the health of occupants cannot be overlooked.
- Published
- 2020
- Full Text
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85. Lifecycle management of component catalogs based on a neutral model to support seamless integration with plant 3D design
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Hyunoh Lee, Duhwan Mun, Byung Chul Kim, and Soonhung Han
- Subjects
0209 industrial biotechnology ,Data interface ,Computer science ,Computational Mechanics ,02 engineering and technology ,Computer Graphics and Computer-Aided Design ,Application lifecycle management ,Human-Computer Interaction ,Computational Mathematics ,020901 industrial engineering & automation ,Modeling and Simulation ,Component (UML) ,0202 electrical engineering, electronic engineering, information engineering ,Systems engineering ,020201 artificial intelligence & image processing ,Engineering (miscellaneous) ,3d design ,ISO 15926 ,Neutral model - Abstract
For performing design tasks in a process plant construction project using a three-dimensional (3D) computer-aided design system, it is necessary to build a library to save catalogs containing information on 3D shape, specifications, and ports for bulk materials, such as pipes and fittings, or custom-built equipment, such as large equipment and skids. Furthermore, a library must be effectively reused as the building process requires considerable time and cost. In this study, a system architecture that manages the entire lifecycle of a catalog is proposed for generating, saving, and managing a neutral catalog for components and for converting to a native format of a commercial system needed by users. Subsequently, detailed technologies required to implement such architecture are discussed. Lastly, experiments on building, searching, and exchanging are conducted for approximately 3000 catalogs provided by company P in Korea to verify the effectiveness of the proposed architecture for lifecycle management of a component catalog.
- Published
- 2020
- Full Text
- View/download PDF
86. Airborne Bacteria in Outdoor Air and Air of Mechanically Ventilated Buildings at City Scale in Hong Kong across Seasons
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Marcus H. Y. Leung, You Zhou, Yonghang Lai, Patrick K. H. Lee, Jimmy C. K. Tong, Ian Ridley, and Xinzhao Tong
- Subjects
ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION ,ComputerApplications_COMPUTERSINOTHERSYSTEMS ,Geographic variation ,010501 environmental sciences ,Atmospheric sciences ,complex mixtures ,01 natural sciences ,medicine ,Environmental Chemistry ,Cities ,City scale ,Source tracking ,0105 earth and related environmental sciences ,Air Pollutants ,Bacteria ,General Chemistry ,Seasonality ,medicine.disease ,Respiration, Artificial ,Air Pollution, Indoor ,Hong Kong ,Environmental science ,Particulate Matter ,Seasons ,Neutral model ,Environmental Monitoring - Abstract
Studies of the indoor airborne microbiome have mostly been confined to a single location and time point. Here, we characterized, over the course of a year, the geographic variation, building-function dependence, and dispersal characteristics of indoor and outdoor airborne microbiomes (bacterial members only) of eight mechanically ventilated commercial buildings. Based on the Sloan neutral model, airborne microbiomes were randomly dispersed in the respective indoor and outdoor environments and between the two environments during each season. The dominant taxa in the indoor and outdoor environments showed minor variations at each location among seasons. The airborne microbiomes displayed weak seasonality for both indoor and outdoor environments, while a weak geographic variation was found only for the indoor environments. Source tracking results show that outdoor air and occupant skin were major contributors to the indoor airborne microbiomes, but the extent of the contribution from each source varied within and among buildings over the seasons, which suggests variations in local building use. Based on 32 cases of indoor airborne microbiome data, we determined that the indoor/outdoor (I/O) ratio of PM2.5 was not a robust indicator of the sources found indoors. Alternatively, the indoor concentration of carbon dioxide was more closely correlated with the major sources of the indoor airborne microbiome in mechanically ventilated environments.
- Published
- 2020
- Full Text
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87. Reference-Dependent Preferences and Overbidding in Private and Common Value Auctions
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Mariano Runco
- Subjects
Standard Risk ,Bayesian information criterion ,Econometrics ,Economics ,Common value auction ,Function (mathematics) ,Bidding ,Object (computer science) ,Value (mathematics) ,Neutral model - Abstract
This paper proposes a model of reference dependent preferences to explain overbidding in private and common value auctions. It is assumed that the reference point is proportional to the value of the object and that losses are weighed more heavily than gains in the utility function. Equilibrium bidding strategies are derived for first- and second-price private and common value auctions. I find that this model fits the data of all experiments analyzed, both private and common value, better in terms of the Bayesian Information Criterion than a standard risk neutral model; moreover, it explains overbidding in all private value and some common value auctions better than other alternative models. These results suggest that reference dependence, among other factors, might play a role in the widespread tendency of subjects to overbid in most experimental auctions.
- Published
- 2020
- Full Text
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88. The Evolution of Sustainability Ideas in China from 1946 to 2015, Quantified by Culturomics
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Danqing Zhang, Guowen Huang, Jiaen Zhang, Xiaoyu Hou, Tianyi Zhou, Xianyuan Chang, Ying Ge, and Jie Chang
- Subjects
Renewable Energy, Sustainability and the Environment ,Geography, Planning and Development ,cultural evolution ,linguistic ecology ,neutral model ,selection and drift ,economic concepts ,ecological concepts ,Building and Construction ,Management, Monitoring, Policy and Law - Abstract
Economy and ecology are two main aspects of human sustainable development. However, a comprehensive analysis of the status and trends of economic and ecological cognition is still lacking. Here, we defined economic and ecological concepts as cultural traits that constitute a complex system representing sustainability ideas. Adopting a linguistic ecology perspective, we analysed the frequency distribution, turnover and innovation rates of 3713 concepts appearing in China’s mainstream newspaper, People’s Daily, from 1946 to 2015. Results reveal that: (1) In the whole historical period, there were more economic concepts than ecological concepts both in amount and category. Economic concepts experienced stronger cultural drift than ecological concepts tested by the neutral model of cultural evolution; (2) popular economic concepts became more diversified, but popular ecological concepts became more uniform; (3) both economic concepts and ecological concepts attained more variation in their own disciplinary domains than in cross-disciplinary domains; and (4) as a platform of both giving information and opinion, a newspaper is subjected to cultural selection, especially reflected in the change in ecological concepts under the context of Chinese ecological civilization construction. We concluded with a discussion of promoting vibrant and resilient ecological knowledge in fostering sustainability activities and behaviours.
- Published
- 2022
- Full Text
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89. A Comprehensive Analysis of Gene Expression Evolution Between Humans and Mice
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Yupeng Wang and Romdhane Rekaya
- Subjects
gene expression ,evolution ,ortholog ,neutral model ,promoter ,Evolution ,QH359-425 - Abstract
Evolutionary changes in gene expression account for most phenotypic differences between species. Advances in microarray technology have made the systematic study of gene expression evolution possible. In this study, gene expression patterns were compared between human and mouse genomes using two published methods. Specifically, we studied how gene expression evolution was related to GO terms and tried to decode the relationship between promoter evolution and gene expression evolution. The results showed that (1) the significant enrichment of biological processes in orthologs of expression conservation reveals functional significance of gene expression conservation. The more conserved gene expression in some biological processes than is expected in a purely neutral model reveals negative selection on gene expression. However, fast evolving genes mainly support the neutrality of gene expression evolution, and (2) gene expression conservation is positively but only slightly correlated with promoter conservation based on a motif-count score of the promoter alignment. Our results suggest a neutral model with negative selection for gene expression evolution between humans and mice, and promoter evolution could have some effects on gene expression evolution.
- Published
- 2009
90. Global issues of genetic diversity
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Vida, G., Loeschcke, V., editor, Jain, S. K., editor, and Tomiuk, J., editor
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- 1994
- Full Text
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91. Organization of genetic variation at the molecular level: Lessons from Drosophila
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Kreitman, M., Wayne, M. L., Schierwater, B., editor, Streit, B., editor, Wagner, G. P., editor, and DeSalle, R., editor
- Published
- 1994
- Full Text
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92. Alternatives to the Neutral Theory
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Gillespie, John H. and Golding, Brian, editor
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- 1994
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93. Gene Trees with Background Selection
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Hudson, Richard R., Kaplan, Norman L., and Golding, Brian, editor
- Published
- 1994
- Full Text
- View/download PDF
94. Wastewater treatment plant effluent discharge decreases bacterial community diversity and network complexity in urbanized coastal sediment.
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Dai, Tianjiao, Su, Zhiguo, Zeng, Yufei, Bao, Yingyu, Zheng, Yuhan, Guo, Huaming, Yang, Yunfeng, and Wen, Donghui
- Subjects
SEWAGE disposal plants ,BACTERIAL communities ,COASTAL sediments ,BACTERIAL diversity ,MICROBIAL communities ,INDUSTRIAL wastes ,BODIES of water - Abstract
The wastewater treatment plant (WWTP) effluent discharge affects the microorganisms in the receiving water bodies. Despite the ecological significance of microbial communities in pollutant degradation and element cycling, how the community diversity is affected by effluent remains obscure. Here, we compared the sediment bacterial communities exposed to different intensities of WWTP effluent discharge in Hangzhou Bay, China: i) a severely polluted area that receives effluent from an industrial WWTP, ii) a moderately polluted area that receives effluent from a municipal WWTP, and iii) less affected area that inner the bay. We found that the sediment bacterial diversity decreased dramatically with pollution levels of inorganic nutrients, heavy metals, and organic halogens. Microbial community assembly model analysis revealed increased environmental selection and decreased species migration rate in the severely polluted area, resulting in high phylogenetic clustering of the bacterial communities. The ecological networks were less complex in the two WWTP effluent receiving areas than in the inner bay area, as suggested by the smaller network size and lower modularity. Fewer negative network associations were detected in the severely (6.7%) and moderately (8.3%) polluted areas than in the less affected area (16.7%), indicating more collaborative inter-species behaviors are required under stressful environmental conditions. Overall, our results reveal the fundamental impacts of WWTP effluents on the ecological processes shaping coastal microbial communities and point to the potential adverse effects of diversity loss on ecosystem functions. [Display omitted] • Bacterial community diversity decreases with coastal pollution levels. • Coastal WWTP effluent discharge inhibits species migration. • The impact of pollutants on bacterial diversity is greater than spatial distance. • WWTP effluent discharge decreases bacterial community network complexity. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
95. A forecast for extinction debt in the presence of speciation.
- Author
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Sgardeli, Vasiliki, Iwasa, Yoh, Varvoglis, Harry, and Halley, John M.
- Subjects
- *
BIODIVERSITY conservation , *GENETIC speciation , *BIOLOGICAL extinction , *HABITATS , *SPECIES distribution - Abstract
Predicting biodiversity relaxation following a disturbance is of great importance to conservation biology. Recently-developed models of stochastic community assembly allow us to predict the evolution of communities on the basis of mechanistic processes at the level of individuals. The neutral model of biodiversity, in particular, has provided closed-form solutions for the relaxation of biodiversity in isolated communities (no immigration or speciation). Here, we extend these results by deriving a relaxation curve for a neutral community in which new species are introduced through the mechanism of random fission speciation (RFS). The solution provides simple closed-form expressions for the equilibrium species richness, the relaxation time and the species-individual curve, which are good approximation to the more complicated formulas existing for the same model. The derivation of the relaxation curve is based on the assumption of a broken-stick species-abundance distribution (SAD) as an initial community configuration; yet for commonly observed SADs, the maximum deviation from the curve does not exceed 10%. Importantly, the solution confirms theoretical results and observations showing that the relaxation time increases with community size and thus habitat area. Such simple and analytically tractable models can help crystallize our ideas on the leading factors affecting biodiversity loss. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
96. A graphical framework for model selection criteria and significance tests: refutation, confirmation and ecology.
- Author
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Aho, Ken, Derryberry, Dewayne, Peterson, Teri, and O'Hara, Robert B.
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INFORMATION theory in biology ,BAYES' estimation ,AKAIKE information criterion ,STATISTICAL hypothesis testing ,P-value (Statistics) - Abstract
In this study, we use a novel graphical heuristic to compare the way four methods: significance testing, two popular information-theoretic approaches ( AIC and BIC) and Good's Bayes/non-Bayes compromise (an underutilized hypothesis testing approach whose demarcation criterion adjusts for n), evaluate the merit of competing hypotheses, for example H
0 and HA ., A primary goal of our work is to clarify the concept of strong consistency in model selection. Explicit considerations of this principle (including the strong consistency of BIC) are currently limited to technical derivations, inaccessible to most ecologists. We use our graphical framework to demonstrate, in simple terms, the strong consistency of both BIC and Good's compromise., Our framework also locates the evaluated metrics (and ICs in general) along a conceptual continuum of hypothesis refutation/confirmation that considers n, parameter number and effect size. Along this continuum, significance testing and particularly AIC are refutative for H0 , whereas Good's compromise and particularly BIC are confirmatory for the true hypothesis., Our work graphically demonstrates the well-known asymptotic bias of significance tests for HA , and the incorrectness of using statistically non-consistent methods for point hypothesis testing. To address these issues, we recommend: (i) dedicated confirmatory methods with strong consistency like BIC for use in point hypothesis testing and confirmatory model selection; (ii) significance tests for use in exploratory/refutative hypothesis testing, particularly when conjoined with rational approaches (e.g. Good's compromise, power analyses) to account for the effect of n on P-values; and (iii) asymptotically efficient methods like AIC for exploratory model selection. [ABSTRACT FROM AUTHOR]- Published
- 2017
- Full Text
- View/download PDF
97. Simulating Lithic Raw Material Variability in Archaeological Contexts: A Re-evaluation and Revision of Brantingham's Neutral Model.
- Author
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Pop, Cornel
- Subjects
- *
RAW materials , *PHILOSOPHY of archaeology , *ANALYSIS of stone implements , *MATHEMATICAL models , *QUANTITATIVE research - Abstract
This paper presents a systematic re-evaluation of Brantingham's ( American Antiquity, 68(3), 487-509, 2003) neutral model of raw material procurement. I demonstrate that, in its original form, the model is ill-suited to the identification of archaeologically visible patterns, as it can only simulate processes governing the composition of toolkits and these differ substantially from those influencing the composition of discard records. I discuss and implement a series of modifications, and provide a detailed analysis of discard records produced under revised model definitions. On this basis, I argue that qualitative similarities in patterns generated by the neutral model and those evidenced in archaeological contexts cannot be used to prove, or disprove, the adaptive or functional significance of raw material variability (cf. Brantingham 2003). However, I show that the revised model can be used to detect deviations from neutral expectations quantitatively and within well-defined error ranges. I outline a new set of predictions for what archaeological variability should look like under the simplest procurement, transport, and discard behaviors, and argue that deviations from each of these may be traceable to specific behavioral domains (e.g., biased mobility, raw material selectivity). I also demonstrate that (a) archaeological sites or assemblages do not offer an adequate proxy for the average composition of ancient forager toolkits; (b) assemblage richness is, by itself, a very poor predictor of occupational histories; and (c) that the common practice of calculating expected frequencies from distances to sources is flawed, regardless of how such distances are measured. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
98. The Conundrum of Heterogeneities in Life History Studies.
- Author
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Cam, Emmanuelle, Aubry, Lise M., and Authier, Matthieu
- Subjects
- *
STOCHASTIC analysis , *HETEROGENEITY , *NEUTRALITY , *HERITABILITY - Abstract
What causes interindividual variation in fitness? Evidence of heritability of latent individual fitness traits has resparked a debate about the causes of variation in life histories in populations: neutralism versus empirical adaptationism. This debate about the processes underlying observed variation pits neutral stochastic demographic processes against evolutionarily relevant differences among individual fitness traits. Advancing this debate requires careful consideration of differences among inference approaches used by proponents of each hypothesis. Here we draw parallels between several disciplines focusing on processes generating variation in individuals’ life-course, and we contrast methodologies to disentangle these processes. We draw on other disciplines to clarify terminology, risks of flawed inference, and expand the panel of hypotheses and formalizations of processes generating variation in life histories. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
99. The effects of archipelago spatial structure on island diversity and endemism: predictions from a spatially-structured neutral model.
- Author
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Gascuel, Fanny, Laroche, Fabien, Bonnet‐Lebrun, Anne‐Sophie, and Rodrigues, Ana S. L.
- Subjects
- *
ARCHIPELAGOES , *GEOGRAPHIC spatial analysis , *BIODIVERSITY , *BIOGEOGRAPHY , *SPECIATION analysis - Abstract
Islands are particularly suited to testing hypotheses about the ecological and evolutionary mechanisms underpinning community assembly. Yet the complex spatial arrangements of real island systems have received little attention from both empirical studies and theoretical models. Here, we investigate the extent to which the spatial structure of archipelagos affects species diversity and endemism. We start by proposing a new spatially structured neutral model that explicitly considers archipelago structure, and then investigate its predictions under a diversity of scenarios. Our results suggest that considering the spatial structure of archipelagos is crucial to understanding their diversity and endemism, with structured island systems acting both as 'museums' and 'cradles' of biodiversity. These dynamics of diversification may change the traditionally expected pattern of decrease in species richness with distance from the mainland, even potentially leading to increasing patterns for taxa with high speciation rates in archipelagos off species-poor continental areas. Our results also predict that, within spatially structured archipelagos, metapopulation dynamics and evolutionary processes can generate higher diversity on islands more centrally placed than at the periphery. We derive from our results a set of theoretical predictions, potentially testable with empirical data. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
100. Ecological equivalence of species within phytoplankton functional groups.
- Author
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Mutshinda, Crispin M., Finkel, Zoe V., Widdicombe, Claire E., Irwin, Andrew J., and Norden, Natalia
- Subjects
- *
PHYTOPLANKTON , *BIOGEOCHEMICAL cycles , *ECOLOGICAL research , *BIOMASS , *SPECTRAL irradiance - Abstract
There are tens of thousands of species of phytoplankton found throughout the tree of life. Despite this diversity, phytoplankton are often aggregated into a few functional groups according to metabolic traits or biogeochemical role. We investigate the extent to which phytoplankton species dynamics are neutral within functional groups., Seasonal dynamics in many regions of the ocean are known to affect phytoplankton at the functional group level leading to largely predictable patterns of seasonal succession. It is much more difficult to make general statements about the dynamics of individual species., We use a 7-year time series at station L4 in the Western English Channel with 57 diatom and 17 dinoflagellate species enumerated weekly to test whether the abundance of diatom and dinoflagellate species varies randomly within their functional group envelope or whether each species is driven uniquely by external factors., We show that the total biomass of the diatom and dinoflagellate functional groups is well predicted by irradiance and temperature and quantify trait values governing the growth rate of both functional groups. The biomass dynamics of the functional groups are not neutral and each has their own distinct responses to environmental forcing. Compared to dinoflagellates, diatoms have faster growth rates and grow faster under lower irradiance, cooler temperatures, and higher nutrient conditions., The biomass of most species varies randomly within their functional group biomass envelope, most of the time. As a consequence, modellers will find it difficult to predict the biomass of most individual species. Our analysis supports the approach of using a single set of traits for a functional group and suggests that it should be possible to determine these traits from natural communities. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
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