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WOS:000497952500008; International audience; Despite generally low primary productivity and diatom abundances in oligotrophic subtropical gyres, the North Atlantic Subtropical Gyre (NASG) exhibits significant diatom-driven carbon export on an annual basis. Subsurface pulses of nutrients likely fuel brief episodes of diatom growth, but the exact mechanisms utilized by diatoms in response to these nutrient injections remain understudied within near-natural settings. Here we simulated delivery of subsurface nutrients and compare the response among eukaryotic phytoplankton using a combination of physiological techniques and metatranscriptomics. We show that eukaryotic phytoplankton groups exhibit differing levels of transcriptional responsiveness and expression of orthologous genes in response to release from nutrient limitation. In particular, strategies for use of newly delivered nutrients are distinct among phytoplankton groups. Diatoms channel new nitrate to growth-related strategies while physiological measurements and gene expression patterns of other groups suggest alternative strategies. The gene expression patterns displayed here provide insights into the cellular mechanisms that underlie diatom subsistence during chronic nitrogen-depleted conditions and growth upon nutrient delivery that can enhance carbon export from the surface ocean.

In this study, we examined the interannual variability of net community production (NCP) in the Western Antarctic Peninsula (WAP) using in situ O2/Ar-NCP estimates (2008–2014) and satellite data (SeaWiFS and MODIS-Aqua) from 1997 to 2014. We found that NCP generally first peaks offshore and follows sea-ice retreat from offshore to inshore. Annually integrated NCP (ANCP) displays an onshore-to-offshore gradient, with coastal and shelf regions up to 8 times more productive than offshore regions. We examined potential drivers of interannual variability in the ANCP using an Empirical Orthogonal Function (EOF) analysis. The EOF's first mode explains ∼50% of the variance, with high interannual variability observed seaward of the shelf break. The first principal component is significantly correlated with the day of sea-ice retreat (R = −0.58, p

We estimated mixed layer gross and net community production on a total of 20 crossings in the Australian sector of the Southern Ocean during the summer half-years (October–March) of 2007–2010. These estimates were calculated from measurements of O 2 /Ar ratios and triple isotope compositions of O 2 in ~250 seawater samples collected underway. For comparison purposes, we also measured the seasonal drawdown of mixed layer NO 3 - and SiO 2 concentrations during 2006–2007 and 2007–2008. Across all samples, average values of gross and net O 2 production (measured by O 2 /Ar and O 2 isotopes), were about 86±90 and 18±17 mmol O 2 m −2 day −1 , respectively. Gross production was highest at the Subtropical Front (up to ~230 mmol O 2 m −2 day −1 ), and decreased southward (to ~10 near the southern boundary of the Antarctic Circumpolar Current). In contrast, net community production showed little meridional variation. Net and gross O 2 production increased throughout the spring-to-fall period, although most SiO 2 drawdown occurred in December. Consistent with satellite chlorophyll estimates, we saw no evidence for an intense spring bloom (e.g. as has been observed in the North Atlantic). Volumetric net and gross O 2 production in the mixed layer, normalized to chlorophyll, increased (with considerable scatter) with average irradiance in the mixed layer. These relationships provide a basis for estimating production from Argo float data and properties observed by satellite.

Nitrogen (N) is a limiting nutrient in vast regions of the world's oceans, yet the sources of N available to various phytoplankton groups remain poorly understood. In this study, we investigated inorganic carbon (C) fixation rates and nitrate (NO

We present estimates of mixed-layer net community oxygen production (N) and gross oxygen production (G) of the Bellingshausen Sea in March and April 2007. N was derived from oxygen-to-argon (O2/Ar) ratios; G was derived using the dual-delta method from triple oxygen isotope measurements. In addition, O2 profiles were collected at 253 CTD stations. N is often approximated by the biological oxygen air–sea exchange flux (Fbio based on the O2/Ar supersaturation, assuming that significant horizontal or vertical fluxes are absent. Here we show that the effect of vertical fluxes alone can account for Fbio values < 0 in large parts of the Bellingshausen Sea towards the end of the productive season, which could otherwise be mistaken to represent net heterotrophy. Thus, improved estimates of mixed-layer N can be derived from the sum of Fbio, Fe (entrainment from the upper thermocline during mixed-layer deepening) and Fv (diapycnal eddy diffusion across the base of the mixed layer). In the winter sea ice zone (WSIZ), the corresponding correction results in a small change of Fbio = (30 ± 17) mmol m−2 d−1 to N = (34 ± 17) mmol m−2 d−1. However, in the permanent open ocean zone (POOZ), the original Fbio value of (−17 ± 10) mmol m−2 d−1 gives a corrected value for N of (−2 ± 18) mmol m−2 d−1. We hypothesize that in the WSIZ, enhanced water column stability due to the release of freshwater and nutrients from sea ice melt may account for the higher N value. These results stress the importance of accounting for physical biases when estimating mixed-layer marine productivity from in situ O2/Ar ratios.

Marine N2 fixation supports a significant portion of oceanic primary production by making N2 bioavailable to planktonic communities, in the process influencing atmosphere-ocean carbon fluxes and our global climate. However, the geographical distribution and controlling factors of marine N2 fixation remain elusive largely due to sparse observations. Here we present unprecedented high-resolution underway N2 fixation estimates across over 6000 kilometers of the western North Atlantic. Unexpectedly, we find increasing N2 fixation rates from the oligotrophic Sargasso Sea to North America coastal waters, driven primarily by cyanobacterial diazotrophs. N2 fixation is best correlated to phosphorus availability and chlorophyll-a concentration. Globally, intense N2 fixation activity in the coastal oceans is validated by a meta-analysis of published observations and we estimate the annual coastal N2 fixation flux to be 16.7 Tg N. This study broadens the biogeography of N2 fixation, highlights the interplay of regulating factors, and reveals thriving diazotrophic communities in coastal waters with potential significance to the global nitrogen and carbon cycles., The geographical distribution and controlling factors of marine N2 fixation are understudied. Here the authors find increasing rates of N2 fixation from the Sargasso Sea to the coastal waters of North America, driven primarily by cyanobacterial diazotrophs and best correlated with phosphorus availability and chlorophyll-a concentrations.

Because of the difficulty in resolving the large variability of N

WOS:000426143100062; International audience; Because of the difficulty in resolving the large variability of N-2 fixation with current methods which rely on discrete sampling, the development of new methods for high resolution measurements is highly desirable. We present a new method for high-frequency measurements of aquatic N-2 fixation by continuous flow-through incubations and spectral monitoring of the acetylene (C2H2, a substrate analog for N-2) reduction to ethylene (C2H4). In this method, named Flow-through Incubation Acetylene Reduction Assays by Cavity Ring-Down Laser Absorption Spectroscopy (FARACAS), dissolved C2H2 is continuously admixed with seawater upstream of a continuous flow stirred-tank reactor (CFSR) in which C2H2 reduction takes place. Downstream of the flow-through incubator, the C2H4 gas is stripped using a bubble column contactor and circulated with a diaphragm pump into a wavelength-scanned cavity ring down laser absorption spectrometer (CRDS). Our method provides high-resolution and precise mapping of aquatic N-2 fixation, its diel cycle, and its response to environmental gradients, and can be adapted to measure other biological processes. The short-duration of the flow-through incubations without preconcentration of cells minimizes potential artifacts such as bottle containment effects while providing near real-time estimates for adaptive sampling. We expect that our new method will improve the characterization of the biogeography and kinetics of aquatic N-2 fixation rates.

WOS:000459327600015; International audience; An inherent issue in high-throughput rRNA gene tag sequencing microbiome surveys is that they provide compositional data in relative abundances. This often leads to spurious correlations, making the interpretation of relationships to biogeochemical rates challenging. To overcome this issue, we quantitatively estimated the abundance of microorganisms by spiking in known amounts of internal DNA standards. Using a 3-year sample set of diverse microbial communities from the Western Antarctica Peninsula, we demonstrated that the internal standard method yielded community profiles and taxon cooccurrence patterns substantially different from those derived using relative abundances. We found that the method provided results consistent with the traditional CHEMTAX analysis of pigments and total bacterial counts by flow cytometry. Using the internal standard method, we also showed that chloroplast 16S rRNA gene data in microbial surveys can be used to estimate abundances of certain eukaryotic phototrophs such as cryptophytes and diatoms. In Phaeocystis, scatter in the 16S/18S rRNA gene ratio may be explained by physiological adaptation to environmental conditions. We conclude that the internal standard method, when applied to rRNA gene microbial community profiling, is quantitative and that its application will substantially improve our understanding of microbial ecosystems. IMPORTANCE High-throughput-sequencing-based marine microbiome profiling is rapidly expanding and changing how we study the oceans. Although powerful, the technique is not fully quantitative; it provides taxon counts only in relative abundances. In order to address this issue, we present a method to quantitatively estimate microbial abundances per unit volume of seawater filtered by spiking known amounts of internal DNA standards into each sample. We validated this method by comparing the calculated abundances to other independent estimates, including chemical markers (pigments) and total bacterial cell counts by flow cytometry. The internal standard approach allows us to quantitatively estimate and compare marine microbial community profiles, with important implications for linking environmental microbiomes to quantitative processes such as metabolic and biogeochemical rates.

WOS:000447661300002; International audience; Marine net community production (NCP) tracks uptake of carbon by plankton communities and its potential transport to depth. Relationships between marine microbial community composition and NCP currently remain unclear despite their importance for assessing how different taxa impact carbon export. We conducted 16 and 18S rRNA gene (rDNA) sequencing on samples collected across the Western North Atlantic in parallel with high-resolution O-2/Ar-derived NCP measurements. Using an internal standard technique to estimate in-situ prokaryotic and eukaryotic rDNA abundances per liter, we employed statistical approaches to relate patterns of microbial diversity to NCP. Taxonomic abundances calculated using internal standards provided valuable context to traditional relative abundance metrics. A bloom in the Mid-Atlantic Bight featured high eukaryote abundances with low eukaryotic diversity and was associated with the harmful algal bloom-forming Aureococcusanophagefferens, phagotrophic algae, heterotrophic flagellates, and particle-associated bacteria. These results show that coastal Aureococcus blooms host a distinct community associated with regionally significant peaks in NCP. Meanwhile, weak relationships between taxonomy and NCP in less-productive waters suggest that productivity across much of this region is not linked to specific microplankton taxa.

We present a novel method for continuous and automated shipboard measurements of dissolved inorganic carbon concentration ([DIC]) in surface water. The method is based on dual isotope dilution and cavity ring-down spectroscopy (DID-CRDS). In this method, seawater is continuously sampled and mixed with a flow of NaH(13)CO3 solution that is also enriched in deuterated water (the spike). The isotopic composition of CO2 (δ(13)C(spiked_sample)) derived from the DIC in the mixture, and the D/H ratio of the mixed water (δD(spiked_sample)), are measured by CRDS analyzers. The D/H of the water in the mixture allows accurate estimates of the mixing ratio of the sample and the spike. [DIC] of the sample is then calculated from the mixing ratio, [DI(13)C] of the spike, and δ(13)C(spiked_sample). In the laboratory, the precision of the method is0.02% (±0.4 μmol kg(-1) when [DIC] = 2000 μmol kg(-1)). A shipboard test was conducted in the Delaware Bay and Estuary. For 2 min average [DIC], a precision of0.03% was achieved. Measurements from the DID-CRDS showed good agreement with independent measurements of discrete samples using the well-established coulometric method (mean difference = -1.14 ± 1.68 μmol kg(-1)), and the nondispersive infrared(NDIR)-based methods (mean difference = -0.9 ± 4.73 μmol kg(-1)).

Continuous measurements of CO 2 partial pressure, dissolved oxygen, and the oxygen argon ratio (O 2 /Ar) in surface waters, complemented by discrete observations of inorganic carbon, along a late-summer south-to-north transect in the Australian Sector of the Southern Ocean (115°E, WOCE I9S) are presented. The largest net community production (NCP, based on O 2 /Ar), and air–sea CO 2 disequilibrium (ΔDpCO 2 ) were found in three regions: (1) between the southern boundary of the Antarctic Circumpolar Current (63.6°S) and southern extent of the Polar Front (58.6°S, NCP = 30 mmol C m − 2 d − 1 , ΔpCO 2 = 30 to 50 μatm); (2) between the northern extent of the Sub-Antarctic Front (45.5°S) and the Sub-Tropical Front (39.8°S, NCP = 50 mmol C m − 2 d − 1 , ΔpCO 2 = 25 μatm); and (3) near 35°S (NCP = 50 mmol C m − 2 d − 1 , ΔpCO 2 = 20 μatm). Areas of enhanced NCP were correlated with shallow mixed layer depths, suggesting that production is controlled in part by light limitation. We found good agreement between estimates of NCP based on O 2 /Ar measurements and those derived from seasonal (mixed layer) inorganic carbon deficits. In ice covered areas, and in areas where surface temperature changes act on shorter timescales than the equilibration of oxygen in the mixed layer, we find that physical controls on surface O 2 are of equal magnitude to biological controls, which has important implications for the use of oxygen sensors on autonomous platforms to infer NCP.

Surface ocean productivity mediates the transfer of carbon to the deep ocean and in the process regulates atmospheric CO2 levels. A common axiom in oceanography is that large phytoplankton contribute disproportionally to the transfer of carbon to the deep ocean because of their greater ability to escape grazing pressure, build biomass, and sink. In the present study, we assessed the relationship of net community production to phytoplankton assemblages and plankton size distribution in the Sub-Antarctic Zone and northern reaches of the Polar Frontal Zone in the Australian sector of the Southern Ocean. We reanalyzed and synthesized previously published estimates of O2/Ar net community oxygen production (NCP) and triple-O2 isotopes gross primary oxygen production (GPP) along with microscopic and pigment analyses of the microbial community. Overall, we found that the axiom that large phytoplankton drive carbon export was not supported in this region. Mixed-layer-depth-integrated NCP was correlated to particulate organic carbon (POC) concentration in the mixed layer. While lower NCP/GPP and NCP/POC values were generally associated with communities dominated by smaller plankton size (as would be expected), these communities did not preclude high values for both properties. Vigorous NCP in some regions occurred in the virtual absence of large phytoplankton (and specifically diatoms) and in communities dominated by nanoplankton and picoplankton. We also observed a positive correlation between NCP and the proportion of the phytoplankton community grazed by microheterotrophs, supporting the mediating role of grazers in carbon export. The novel combination of techniques allowed us to determine how NCP relates to upper ocean ecosystem characteristics and may lead to improved models of carbon export.

The O2/Ar approach has become a key method to estimate oceanic net community production (NCP). However, in some seasons and regions of the ocean, strong vertical mixing of O2-depleted deepwater introduces a large error into O2/Ar-derived NCP estimates. In these cases, undersaturated-O2/Ar observations have for all intents and purposes been ignored. We propose to combine underway O2/Ar and N2O observations into a composite tracer that is conservative with respect to the influence of vertical mixing on the surface biological O2 inventory. We test the proposed method with an ocean observing system simulation experiment (OSSE) in which we compare N2O-O2/Ar and O2/Ar-only gas flux estimates of NCP to the model-simulated true NCP in the Southern Ocean. Our proof-of-concept simulations show that the N2O-O2/Ar tracer significantly improves NCP estimates when/where vertical mixing is important.

WOS:000414233700065; International audience; Despite our current realization of the tremendous diversity that exists in plankton communities, we have little understanding of how this biodiversity influences the biological carbon pump other than broad paradigms such as diatoms contributing disproportionally to carbon export. Here we combine high-resolution underway O-2/Ar, which provides an estimate of net community production, with high-throughput 18 S ribosomal DNA sequencing to elucidate the relationship between eukaryotic plankton community structure and carbon export potential at the Western Antarctica Peninsula (WAP), a region which has experienced rapid warming and ecosystem changes. Our results show that in a diverse plankton system comprised of similar to 464 operational taxonomic units (OTUs) with at least 97% 18 S identity, as few as two or three key OTUs, i.e. large diatoms, Phaeocystis, and mixotrophic/phagotrophic dinoflagellates, can explain a large majority of the spatial variability in the carbon export potential (76-92%). Moreover, we find based on a community co-occurrence network analysis that ecosystems with lower export potential have more tightly coupled communities. Our results indicate that defining plankton communities at a deeper taxonomic resolution than by functional groups and accounting for the differences in size and coupling between groups can substantially improve organic carbon flux predictions.

Employing continuous in situ measurements of dissolved O2/Ar and O2 in the Arctic Ocean, we investigate the mechanisms controlling the physical (abiotic) and biological oxygen saturation state variability in the surface ocean beneath sea ice. O2/Ar measurements were made underway using Equilibrator Inlet Mass Spectrometry (EIMS) during an icebreaker survey transiting the upper Arctic Ocean across the North Pole in late summer 2011. Using concurrently collected measurements of total oxygen, we devolve biological oxygen saturation and physical oxygen (Ar) saturation signals at unprecedented horizontal resolution in the surface ocean. In the Nansen Basin, Ar is undersaturated up to −7% while biological oxygen supersaturation peaks at 18.4%. We attribute this to ice melt, Atlantic Water influence and/or cooling. In the Canadian Basin, Ar is supersaturated up to 3%, likely because of Ar injection from freezing processes and long residence times of gas under ice cover. The overall Canadian Basin to Eurasian Basin gradient of Ar supersaturation to undersaturation may reflect net freezing in the Canadian Basin and net melting in the Eurasian Basin over several seasons, either by Pacific to Atlantic sector ice transport or local changes over time. Ar saturation could thereby provide large-scale high-resolution estimates of current and future changes in these processes. O2/Ar supersaturation averages 4.9% with peaks up to 9.8% where first year ice and abundant melt ponds likely allow sufficient light for blooms in ice-covered regions.

Large-scale patterns of net community production (NCP) were estimated during the late summer cruise ARK-XXVI/3 (TransArc, August/September 2011) to the central Arctic Ocean. Several approaches were used based on the following: (i) continuous measurements of surface water oxygen to argon ratios (O2/Ar), (ii) underway measurements of surface partial pressure of carbon dioxide (pCO2), (iii) discrete samples of dissolved inorganic carbon, and (iv) dissolved inorganic nitrogen and phosphate. The NCP estimates agreed well within the uncertainties associated with each approach. The highest late summer NCP (up to 6 mol C m−2) was observed in the marginal sea ice zone region. Low values (

Southern Ocean organic carbon export plays an important role in the global carbon cycle, yet its basin-scale climatology and variability are uncertain due to limited coverage of in situ observations. In this study, a neural network approach based on the self-organizing map (SOM) is adopted to construct weekly gridded (1° × 1°) maps of organic carbon export for the Southern Ocean from 1998 to 2009. The SOM is trained with in situ measurements of O2 / Ar-derived net community production (NCP) that are tightly linked to the carbon export in the mixed layer on timescales of one to two weeks and with six potential NCP predictors: photosynthetically available radiation (PAR), particulate organic carbon (POC), chlorophyll (Chl), sea surface temperature (SST), sea surface height (SSH), and mixed layer depth (MLD). This nonparametric approach is based entirely on the observed statistical relationships between NCP and the predictors and, therefore, is strongly constrained by observations. A thorough cross-validation yields three retained NCP predictors, Chl, PAR, and MLD. Our constructed NCP is further validated by good agreement with previously published, independent in situ derived NCP of weekly or longer temporal resolution through real-time and climatological comparisons at various sampling sites. The resulting November–March NCP climatology reveals a pronounced zonal band of high NCP roughly following the Subtropical Front in the Atlantic, Indian, and western Pacific sectors, and turns southeastward shortly after the dateline. Other regions of elevated NCP include the upwelling zones off Chile and Namibia, the Patagonian Shelf, the Antarctic coast, and areas surrounding the Islands of Kerguelen, South Georgia, and Crozet. This basin-scale NCP climatology closely resembles that of the satellite POC field and observed air–sea CO2 flux. The long-term mean area-integrated NCP south of 50° S from our dataset, 17.9 mmol C m−2 d−1, falls within the range of 8.3 to 24 mmol C m−2 d−1 from other model estimates. A broad agreement is found in the basin-wide NCP climatology among various models but with significant spatial variations, particularly in the Patagonian Shelf. Our approach provides a comprehensive view of the Southern Ocean NCP climatology and a potential opportunity to further investigate interannual and intraseasonal variability.

Air-sea gas exchange plays a key role in the cycling of greenhouse and other biogeochemically important gases. Although air-sea gas transfer is expected to change as a consequence of the rapid decline in summer Arctic sea ice cover, little is known about the effect of sea ice cover on gas exchange fluxes, especially in the marginal ice zone. During the Polarstern expedition ARK-XXVI/3 (TransArc, August/September 2011) to the central Arctic Ocean, we compared 222Rn/226Ra ratios in the upper 50 m of 14 ice-covered and 4 ice-free stations. At three of the ice-free stations, we find 222Rn-based gas transfer coefficients in good agreement with expectation based on published relationships between gas transfer and wind speed over open water when accounting for wind history from wind reanalysis data. We hypothesize that the low gas transfer rate at the fourth station results from reduced fetch due to the proximity of the ice edge, or lateral exchange across the front at the ice edge by restratification. No significant radon deficit could be observed at the ice-covered stations. At these stations, the average gas transfer velocity was less than 0.1 m/d (97.5% confidence), compared to 0.5–2.2 m/d expected for open water. Our results show that air-sea gas exchange in an ice-covered ocean is reduced by at least an order of magnitude compared to open water. In contrast to previous studies, we show that in partially ice-covered regions, gas exchange is lower than expected based on a linear scaling to percent ice cover.

An autonomous system using isotope dilution as its core method has been developed to obtain high-frequency measurements of dissolved inorganic carbon (DIC) concentrations in the surface ocean. This system accurately mixes a seawater sample and a 13C-labeled sodium bicarbonate solution (spike). The mixed solution is then acidified and sent through a gas permeable membrane contactor. CO2 derived from DIC in the mixture is extracted by a CO2-free gas stream, and is sent to a cavity ring-down spectrometer to analyze its 13C/12C ratio. [DIC] of the seawater can then be derived from the measured 13C/12C, the known mixing ratio and the [DI13C] of the spike. The method has been tested under a wide [DIC] range (1800–2300 µmol/kg) in the laboratory. It has also been deployed on a cruise that surveyed ocean waters to the south of Florida. At a sampling resolution of 4 min (15 samples per hour), the relative standard deviation of DIC determined from the laboratory tests and the field deployment is ± 0.07% and ± 0.09%, respectively. The accuracy of the method is better than 0.1% except where [DIC] varies faster than 5 µmol/kg per minute. Based on the laboratory and field evaluations, we conclude that this method can provide accurate underway [DIC] measurements at high resolution in most oceanic regions.

We observe surface and subsurface fluorescence-derived chlorophyll maxima in southern Drake Passage during austral summer. Backscatter measurements indicate that the deep chlorophyll maxima (DCMs) are also deep biomass maxima, and euphotic depth estimates show that they lie below the euphotic layer. Subsurface, offshore and near-surface, onshore features lie along the same isopycnal, suggesting advective generation of DCMs. Temperature measurements indicate a warming of surface waters throughout austral summer, capping the winter water (WW) layer and increasing off-shelf stratification in this isopycnal layer. The outcrop position of the WW isopycnal layer shifts onshore, into a surface phytoplankton bloom. A lateral potential vorticity (PV) gradient develops, such that a down-gradient PV flux is consistent with offshore, along-isopycnal tracer transport. Model results are consistent with this mechanism. Subduction of chlorophyll and biomass along isopycnals represents a biological term not observed by surface satellite measurements which may contribute significantly to the strength of the biological pump in this region.

The most common currency for estimating N2 fixation is acetylene reduction to ethylene. Real-time esti- mates of nitrogen fixation are needed to close the global nitrogen budget and these remain a critical gap in both laboratory and field experiments. We present a new method for continuous real-time measurements of ethylene pro- duction: Acetylene Reduction Assays by Cavity ring-down laser Absorption Spectroscopy (ARACAS). In ARACAS, air in the headspace of an incubation chamber is circulated with a diaphragm pump through a cavity ring-down eth- ylene spectrometer and back to the incubation chamber. This paper describes the new approach and its benefits compared to the conventional detection of ethylene by flame ionization detector gas chromatography. First, the detection of acetylene reduction to ethylene is non-intru- sive and chemically non-destructive, allowing for real-time measurements of nitrogenase activity. Second, the mea- surements are made instantaneously and continuously at ppb levels, allowing for observation of real-time kinetics on time intervals as short as a few seconds. Third, the instrument can be automated for long time periods of measurement. Finally, the technique will be widely accessible by the research community as it can be readily adapted to most existing acetylene reduction protocols and is based on a modestly priced, commercially available instrument. We illustrate its use for measuring N2 fixation using two species, the diazotrophic bacterium Azotobacter vinelandii and the lichen Peltigera praetextata. We also discuss potential limitations of the approach, primarily the implications of leaks in the analyzer, as well as future improvements.

Diatoms are a major group of phytoplankton that account for approximately 40% of the ocean carbon fixation and the vast majority of biogenic silica production through the construction of their cell walls (termed frustules). These frustules accumulate and are partially preserved in the ocean sediments. Diatom growth and nutrient utilization in high-nitrate, low-chlorophyll regions of the world's oceans are mostly regulated by iron availability. Diatoms acclimate to iron limitation by decreasing cell size. The associated increase in surface area-to-volume ratio and decrease in diffusive boundary layer thickness may improve nutrient uptake kinetics. In parallel, cellular silicon (Si) contents are elevated in iron-limited diatoms relative to nitrogen (N) and carbon (C). Variations in degree of silicification and nutritional requirements of iron-limited diatoms have been hypothesized to account for higher cellular Si and/or lower cellular N and C, respectively. However, in some diatoms, frustule silicification does not significantly change when cells are iron-limited. Instead, changes in the Si-containing valve surface area relative to volume within these diatoms is hypothesized to be responsible for the variations in the cellular Si : N and Si : C ratios. In particular, some examined iron-limited pennate diatoms have reduced widths relative to their lengths (i.e. lower length-normalized widths, LNW) compared to iron-replete cells. In the pennate diatom Fragilariopsis kerguelensis, the mean LNWs of valves preserved in sediments throughout the Southern Ocean (a well-characterized iron-limited region) is positively correlated with satellite-derived, climatological net primary productivity in the overlying waters. Because of the specific morphological changes in pennate diatom frustules in response to iron availability, the valve morphometerics (e.g. LNWs) can potentially be used as a diagnostic tool for iron-limited diatom growth and relative changes in the Si : N (and Si : C) ratios in extant diatom assemblages as well as those preserved in the sediments.

A three dimensional, time-evolving field of atmospheric potential oxygen (APO ~O2/N2+CO2) was estimated using surface O2, N2 and CO2 fluxes from the WHOI ocean ecosystem model to force the MATCH atmospheric transport model. Land and fossil carbon fluxes were also run in MATCH and translated into O2 tracers using assumed O2:CO2 stoichiometries. The modeled seasonal cycles in APO agree well with the observed cycles at 13 global monitoring stations, with agreement helped by including oceanic CO2 in the APO calculation. The modeled latitudinal gradient in APO is strongly influenced by seasonal rectifier effects in atmospheric transport. An analysis of the APO-vs.-CO2 mass-balance method for partitioning land and ocean carbon sinks was performed in the controlled context of the MATCH simulation, in which the true surface carbon and oxygen fluxes were known exactly. This analysis suggests uncertainty of up to ±0.2 PgC in the inferred sinks due to variability associated with sparse atmospheric sampling. It also shows that interannual variability in oceanic O2 fluxes can cause large errors in the sink partitioning when the method is applied over short timescales. However, when decadal or longer averages are used, the variability in the oceanic O2 flux is relatively small, allowing carbon sinks to be partitioned to within a standard deviation of 0.1 Pg C/yr of the true values, provided one has an accurate estimate of long-term mean O2 outgassing.

Biogeochemical rate processes in the Southern Ocean have an important impact on the global environment. Here, we summarize an extensive set of published and new data that establishes the pattern of gross primary production and net community production over large areas of the Southern Ocean. We compare these rates with model estimates of dissolved iron that is added to surface waters by aerosols. This comparison shows that net community production, which is comparable to export production, is proportional to modeled input of soluble iron in aerosols. Our results strengthen the evidence that the addition of aerosol iron fertilizes export production in the Southern Ocean. The data also show that aerosol iron input particularly enhances gross primary production over the large area of the Southern Ocean downwind of dry continental areas.

In vitro activities of phosphoenolpyruvate carboxylase (PEPC) and phosphoenolpyruvate carboxykinase (PEPCK) were measured in chemostat cultures of the marine diatom Phaeodactylum tricornutum grown under either phosphate-or nitrate-limited conditions and at low (1 μmol kg−1) and high (70–100 μmol kg−1) CO2 concentrations. A comparison of in vitro methods for measuring PEPC activity underscored the importance of including glycerol in the reaction mixture because of its ability to stabilize the quaternary structure of PEPC. Assays for total β-carboxylase activity (PEPC + PEPCK) identified the importance of substituting Mn2+ for Mg2+ as an activator for PEPC since Mg2+ is inhibitory to PEPCK activity. Results indicated that PEPC was constitutive, that is, present in a constant ratio relative to the limiting nutrient over a wide range of growth conditions. PEPCK acclimation was greater, and its intracellular concentration was positively correlated with CO2 concentrations. In vitro β-carboxylase activi...

Southern Ocean Dynamics and Biogeochemistry Workshop; Pasadena, California, 2–5 February 2015

Proteorhodopsins (PR) are retinal-binding membrane proteins that function as light-driven proton pumps to generate energy for metabolism and growth. Recently PR-like genes have been identified in some marine eukaryotic protists, including diatoms, dinoflagellates, haptophytes and cryptophytes. These rhodopsins are homologous to green-light-absorbing, ATP-generating PRs present within bacteria. Here we show that in the oceanic diatom Pseudo-nitzschia granii, PR-like gene and protein expressions increase appreciably under iron limitation. In a survey of available transcriptomes, PR-like genes in diatoms are generally found in isolates from marine habitats where seasonal to chronic growth limitation by the micronutrient iron is prevalent, yet similar biogeographical patterns are not apparent in other phytoplankton taxa. We propose that rhodopsin-based phototrophy could account for a proportion of energy synthesis in marine eukaryotic photoautotrophs, especially when photosynthesis is compromised by low iron availability. This alternative ATP-generating pathway could have significant effects on plankton community structure and global ocean carbon cycling.

A theoretical model was developed to explain the characteristics of carbon isotopic fractionation (eP) by the marine diatom Phaeodactylum tricornutum under nutrient- and light-limited growth conditions. The model takes into consideration active transport and diffusion of inorganic carbon through the cell membrane and chloroplast membrane and the energetic tradeoff between production of Rubisco and operation of a carbon-concentrating mechanism to achieve a given growth rate. The model is able to explain 88% of the variance in experimental ep data reported in this study and in previous work and is able to account for the observed pattern of Rubisco activity in nitrate-limited chemostats. Two important implications of the model include the fact that ep is not a unique function of the ratio of growth rate to external CO2 concentration (as opposed to the predictions of several previous models) and that changes in light-limited and nutrient-limited growth rates have opposite effects on the fraction of CO2 taken up by the chloroplast that is lost to diffusion and hence on certain patterns of carbon isotopic fractionation.

Models describing the evolution of the partial pressure of atmospheric oxygen over Phanerozoic time are constrained by the mass balances required between the inputs and outputs of carbon and sulfur to the oceans. This constraint has limited the applicability of proposed negative feedback mechanisms for maintaining levels of atmospheric O 2 at biologically permissable levels. Here we describe a modeling approach that incorporates O 2 -dependent carbon and sulfur isotope fractionation using data obtained from laboratory experiments on carbon-13 discrimination by vascular land plants and marine plankton. The model allows us to calculate a Phanerozoic O 2 history that agrees with independent models and with biological and physical constraints and supports the hypothesis of a high atmospheric O 2 content during the Carboniferous (300 million years ago), a time when insect gigantism was widespread.

A closed eddy core in the Atlantic Subantarctic Southern Ocean was fertilized twice with two tons of iron (as FeSO4) to test whether iron addition enhances downward particle flux into the deep ocean. The ~300 km2 fertilized patch was occupied for 39 d. Chlorophyll-a and primary productivity doubled after fertilization, and photosynthetic quantum yield (FV/FM) increased from 0.33 to ≥0.40. Silicic acid was at limiting concentrations (

N(2) fixation by moss-associated cyanobacteria plays an important role in the nitrogen cycling of terrestrial ecosystems. Recent studies have mainly focused on boreal ecosystems; little is known about such association in other ecosystems. Moss-associated cyanobacteria are subject to rapid changes (hourly or less) in environmental conditions that may affect N(2) fixation kinetics. Using a recently developed method (Acetylene Reduction Assays by Cavity ring-down laser Absorption Spectroscopy, ARACAS) with higher sensitivity and sampling frequency than the conventional method, we characterize short-term kinetics of N(2) fixation by cyanobacteria on moss carpets from warm and cold temperate forests. We report the identification of a heretofore unknown multispecies true-moss-cyanobacteria diazotrophic association. We demonstrate that short-term change in abiotic variables greatly influences N(2) fixation. We also show that difference in relative proportion of two epiphytic diazotrophs is consistent with divergent influences of temperature on their N(2) fixation kinetics. Further research is needed to determine whether this difference is consistent with a latitudinal trend.

[1] In connection with the Palmer LTER program, mixed layer water samples were collected during the cruise of the L.M. Gould in Jan., 2008 at 49 stations on a 20 × 100 km grid in the West Antarctica Peninsula (WAP) region of the Southern Ocean. In this study, [O2]/[Ar] ratios and the triple isotope composition of dissolved O2 were measured, and were used to estimate net community O2 production (NCP) and gross primary O2production (GPP), respectively. These estimates are further converted to carbon export production, primary production and the f-ratio. Our measurements give NCP ranging from −3 to 76 mmol O2 m−2 day−1 (−25 to 650 mg C m−2 day−1), and GPP from 40 to 220 mmol O2 m−2 day−1 (180 to 1010 mg C m−2 day−1). The O2 NCP/GPP ratios range from −0.04 to 0.43, corresponding to f-ratios of −0.08 to 0.83. NCP and the NCP/GPP ratio are highest in the northern coastal areas, and decrease to lower values toward the southern coastal area and the open ocean. The inshore-offshore gradient appears to be regulated primarily by iron availability, as supported by the positive correlation between NCP and Fv/Fm ratios (r2 = 0.22, p

(1) The seasonal cycle of atmospheric potential oxygen (APOO2 + 1.1 CO2) reflects three seasonally varying ocean processes: 1) thermal in- and outgassing, 2) mixed layer net community production (NCP) and 3) deep water ventilation. Previous studies have isolated the net biological seasonal signal (i.e., the sum of NCP and ventilation), after using air-sea heat flux data to estimate the thermal signal. In this study, we resolve all three components of the APO seasonal cycle using a methodology in which the ventilation signal is estimated based on atmospheric N2O data, the thermal signal is estimated based on heat flux or atmospheric Ar/N2 data, and the production signal is inferred as a residual. The isolation of the NCP signal in APO allows for direct comparison to estimates of NCP based on satellite ocean color data, after translating the latter into an atmospheric signal using an atmospheric transport model. When applied to ocean color data using algorithms specially adapted to the Southern Ocean and APO data at three southern monitoring sites, these two independent methods converge on a similar phase and amplitude of the seasonal NCP signal in APO and yield an estimate of annual mean NCP south of 50°S of 0.8-1.2 Pg C/yr, with corresponding annual mean NPP of � 3 Pg C/yr and a mean growing season f ratio of � 0.33. These results are supported by ocean biogeochemistry model simulations, in which air-sea O2 and N2O fluxes are resolved into component thermal, ventilation and (for O2) NCP contributions. Citation: Nevison, C. D., R. F. Keeling, M. Kahru, M. Manizza, B. G. Mitchell, and N. Cassar (2012), Estimating net community production in the Southern Ocean based on atmospheric potential oxygen and satellite ocean color data, Global Biogeochem. Cycles, 26, GB1020, doi:10.1029/2011GB004040.

[1] We use continuous and discrete measurements of the dissolved O2/Ar ratio in the mixed layer to investigate the dynamics of biological productivity during the Southern Ocean Gas Exchange Experiment in March and April 2008. Injections of SF6 defined two water masses (patches) that were followed for up to 2 weeks. In the first patch, dissolved O2/Ar was supersaturated, indicating net biological production of organic carbon. In the second patch, rapidly decreasing O2/Ar could only be reasonably explained if the mixed layer was experiencing a period of net heterotrophy. The observations rule out dominant contributions from vertical mixing, lateral dilution, or respiration in the ship's underway seawater supply lines. We also compare nine different estimates of net community, new, primary, or gross production made during the experiment. Net community and new production estimates agreed well in the first patch but disagreed in the second patch, both during an initial net heterotrophic period but also during the apparently autotrophic period at the end of the observations. Rapidly changing productivity during the second patch complicated the comparison of methods that integrate over daily and several week timescales. Primary productivity values from on-deck 24 h 14C incubations and gross carbon production values from photosynthesis-irradiance experiments were nearly identical even during highly dynamic periods of net heterotrophy, while gross oxygen production measurements were 3.5–4.2 times higher but with uncertainties in that ratio near ±2. These comparisons show that the photosynthesis-irradiance experiments based on 1–2 h 14C incubations underestimated gross carbon production.

[1] Sea-air fluxes of gases are commonly calculated from the product of the gas transfer velocity (k) and the departure of the seawater concentration from atmospheric equilibrium. Gas transfer velocities, generally parameterized in terms of wind speed, continue to have considerable uncertainties, partly because of limited field data. Here we evaluate commonly used gas transfer parameterizations using a historical data set of 222Rn measurements at 105 stations occupied on Eltanin cruises and the Geosecs program. We make this evaluation with wind speed estimates from meteorological reanalysis products (from National Centers for Environmental Prediction and European Centre for Medium-Range Weather Forecasting) that were not available when the 22Rn data were originally published. We calculate gas transfer velocities from the parameterizations by taking into account winds in the period prior to the date that 222Rn profiles were sampled. Invoking prior wind speed histories leads to much better agreement than simply calculating parameterized gas transfer velocities from wind speeds on the day of sample collection. For individual samples from the Atlantic Ocean, where reanalyzed winds agree best with observations, three similar recent parameterizations give k values for individual stations with an rms difference of ∼40% from values calculated using 222Rn data. Agreement of basin averages is much better. For the global data set, the average difference between k constrained by 222Rn and calculated from the various parameterizations ranges from −0.2 to +0.9 m/d (average, 2.9 m/d). Averaging over large domains, and working with gas data collected in recent years when reanalyzed winds are more accurate, will further decrease the uncertainties in sea-air fluxes.

The roles of iron and light in controlling biomass and primary productivity are clearly established in the Southern Ocean. However, their influence on net community production (NCP) and carbon export remains to be quantified. To improve our understanding of NCP and carbon export production in the Subantarctic Zone (SAZ) and the northern reaches of the Polar Frontal Zone (PFZ), we conducted continuous onboard determinations of NCP as part of the Sub-Antarctic Sensitivity to Environmental Change (SAZ-Sense) study, which occurred in January–February 2007. Biological O2 supersaturation was derived from measuring O2/Ar ratios by equilibrator inlet mass spectrometry. Based on these continuous measurements, NCP during the austral summer 2007 in the Australian SAZ was approximately 43 mmol O2 m−2 d−1. NCP showed significant spatial variability, with larger values near the Subtropical front, and a general southward decrease. For shallower mixed layers (

[1] Net community production (NCP) and gross primary production (GPP) are two key metrics for quantifying the biological carbon cycle. In this study, we present a detailed characterization of NCP and GPP in the western equatorial Pacific during August and September 2006. We use continuous measurements of dissolved gases (O2 and Ar) in the surface water in order to quantify NCP at subkilometer scale resolution. We constrain GPP in discrete samples using the triple isotopic composition of O2. We find the average NCP in the western equatorial Pacific is 5.9 ± 0.9 mmol O2 m−2 d−1 (equivalent to 1.5 ± 0.2 mol C m−2 yr−1 with error estimates reflecting 1σ confidence levels) and the average GPP is 121 ± 34 mmol O2 m−2 d−1 (equivalent to 32 ± 9 mol C m−2 yr−1). The measurements reveal significant spatial variability on length scales as small as 50 km. The NCP/GPP ratio is 5.7% ± 1.8%. We also present results for NCP and GPP in the coastal area off Papua New Guinea and for GPP in the central Pacific along the equator.

International audience

The oxygen (O(2)) concentration in the surface ocean is influenced by biological and physical processes. With concurrent measurements of argon (Ar), which has similar solubility properties as oxygen, we can remove the physical contribution to O(2) supersaturation and determine the biological oxygen supersaturation. Biological O(2) supersaturation in the surface ocean reflects the net metabolic balance between photosynthesis and respiration, i.e., the net community productivity (NCP). We present a new method for continuous shipboard measurements of O(2)/Ar by equilibrator inlet mass spectrometry (EIMS). From these measurements and an appropriate gas exchange parametrization, NCP can be estimated at high spatial and temporal resolution. In the EIMS configuration, seawater from the ship's continuous intake flows through a cartridge enclosing a gas-permeable microporous membrane contactor. Gases in the headspace of the cartridge equilibrate with dissolved gases in the flowing seawater. A fused-silica capillary continuously samples headspace gases, and the O(2)/Ar ratio is measured by mass spectrometry. The ion current measurements on the mass spectrometer reflect the partial pressures of dissolved gases in the water flowing through the equilibrator. Calibration of the O(2)/Ar ion current ratio (32/40) is performed automatically every 2 h by sampling ambient air through a second capillary. A conceptual model demonstrates that the ratio of gases reaching the mass spectrometer is dependent on several parameters, such as the differences in molecular diffusivities and solubilities of the gases. Laboratory experiments and field observations performed by EIMS are discussed. We also present preliminary evidence that other gas measurements, such as N(2)/Ar and pCO(2) measurements, may potentially be performed with EIMS. Finally, we compare the characteristics of the EIMS with the previously described membrane inlet mass spectrometry (MIMS) approach.

[1] Ar/N 2 Variations in the atmosphere reflect ocean heat fluxes, air-sea gas exchange, and atmospheric dynamics. Here atmospheric Ar/N 2 time series are compared to paired ocean-atmosphere model predictions. Agreement between Ar/N 2 observations and simulations has improved in comparison to a previous study because of longer time series and the introduction of automated samplers at several of the atmospheric stations, as well as the refinement of the paired ocean-atmosphere models by inclusion of Ar and N 2 as active tracers in the ocean component. Although analytical uncertainties and collection artifacts are likely to be mainly responsible for observed Ar/N 2 outliers, air parcel back-trajectory analysis suggests that some of the variability in Ar/N 2 measurements could be due to the low-altitude history of the air mass collected and, by extension, the local oceanic Ar/N 2 signal. Although the simulated climatological seasonal cycle can currently be evaluated with Ar/N 2 observations, longer time series and additional improvements in the signal-to-noise ratio will be required to test other model predictions such as interannual variability, latitudinal gradients, and the secular increase in atmospheric Ar/N 2 expected to result from ocean warming.

Improvements made to an established mass spectrometric method for measuring changes in atmospheric O 2 /N 2 are described. With the improvements in sample handling and analysis, sample throughput and analytical precision have both increased. Aliquots from duplicate flasks are repeatedly measured over a period of 2 weeks, with an overall standard error in each flask of 3-4 per meg, corresponding to 0.6-0.8 ppm O 2 in air. Records of changes in O 2 /N 2 from six global sampling stations (Barrow, American Samoa, Cape Grim, Amsterdam Island, Macquarie Island, and Syowa Station) are presented. Combined with measurements of CO 2 from the same sample flasks, land and ocean carbon uptake were calculated from the three sampling stations with the longest records (Barrow, Samoa, and Cape Grim). From 1994-2002, We find the average CO 2 uptake by the ocean and the land biosphere was 1.7 ± 0.5 and 1.0 ± 0.6 GtC yr -1 respectively; these numbers include a correction of 0.3 Gt C yr -1 due to secular outgassing of ocean O 2 . Interannual variability calculated from these data shows a strong land carbon source associated with the 1997-1998 El Nifio event, supporting many previous studies indicating that high atmospheric growth rates observed during most El Nino events reflect diminished land uptake. Calculations of interannual variability in land and ocean uptake are probably confounded by non-zero annual air sea fluxes of O 2 . The origin of these fluxes is not yet understood.

uptake observed was attributable to direct HCO3 uptake, the other half being direct CO2 uptake mediated either by passive diffusion or active uptake mechanisms. The increase in growth rates and decrease in CO2 concentration associated with the iron fertilization did not trigger any noticeable changes in the mode of DIC acquisition, indicating that under most environmental conditions the carbon concentrating mechanism (CCM) is constitutive. A low-CO2 treatment induced an increase in uptake of CO2, which we attributed to increased extracellular carbonic anhydrase activity, at the expense of direct HCO3 transport across the plasmalemma. Isotopic disequilibrium experimental results are consistent with Southern Ocean carbon stable isotope fractionation data from this and other studies. Although iron fertilization has been shown to significantly enhance phytoplankton growth and may potentially increase carbon flux to the deep ocean, an important source of the inorganic carbon taken up by phytoplankton in this study was HCO3 � , whose concentration is negligibly affected by the anthropogenic rise in CO2. We conclude that biological productivity in this region of the world’s ocean is unlikely to be directly regulated by natural or anthropogenic variations in atmospheric CO2 concentrations because of the presence of a constitutive CCM. INDEX TERMS: 4207 Oceanography: General: Arctic and Antarctic oceanography; 4806 Oceanography: Biological and Chemical: Carbon cycling; 4853 Oceanography: Biological and Chemical: Photosynthesis; 4870 Oceanography: Biological and Chemical: Stable isotopes; KEYWORDS: bicarbonate, phytoplankton, Southern Ocean

Fourteen years after the first observation of Caulerpa taxifolia (Valh) C. Agardh in the northwestern Mediterranean Sea, this green alga of tropical origin is now present in five countries (Spain, France, Monaco, Italy and Croatia). By the end of 1997, more than 46 km(2), at depths of between 0 and 50 m, were found to be affected by this expansion. A standardization of the cartographic procedure is proposed here. Such a standardization is necessary to compare maps produced by various organizations from different countries. For a given independent station, it is based on the definition of three levels of colonization:Level I refers to a station where one or several colonies less than 100 m apart cover a total surface area inferior to 1000 m(2):Level II refers to a station where several colonies less than 250 m apart totally cover more than 1000 m(2) with fragments and small colonies dispersed over a surface area inferior to 10 ha;Level III is attained when several large colonies are dispersed over a surface area superior to 10 ha, with a total covered surface of more than 1000 m(2), impossible to map with precision due to its size.For each of these colonization levels, descriptive parameters can be used to precisely describe the situation: covered surface area, dispersion surface (i.e. "affected" zone), estimation of very large affected zones (i.e. "concerned" zones) and the portions of the coastline along which an affected or concerned zone can be found., Quatorze années après la première observation de Caulerpa taxifolia en Méditerranée nord-occidentale, cette algue d'origine tropicale est présente dans cinq pays (Espagne, France, Monaco, Italie et Croatie). À la fin de l'année 1997, plus de 46 km2 de fonds, situés essentiellement entre 0 et 50 m de profondeur, sont concernés à divers degrés par cette invasion. Une standardisation de la représentation cartographique est proposée. L'objectif de cette normalisation est de pouvoir comparer les cartes produites par divers organismes appartenant à plusieurs pays. Elle est basée sur la définition, pour une station donnée, de trois niveaux de colonisation : ¿ - Le niveau I correspond à une station où se développent une ou plusieurs colonies (réparties à moins de 100 m les unes des autres) et couvrant au total une surface inférieure à 1000 m2 ; ¿ - Le niveau II correspond à une station où de nombreuses colonies (réparties à moins de 250 m les unes des autres) couvrent au total plus de 1000 m2 et sont dispersées dans une surface inférieure à 10 ha ; ¿ - Le niveau III correspond à une station où les colonies sont disséminées dans une zone supérieure à 10 ha et pour lesquelles la surface totale couverte (très supérieure à 1000 m2) n'est plus cartographiable avec précision. Pour chaque niveau un ensemble de paramètres descriptifs permet de préciser la situation : surface totale couverte, surface atteinte, estimation des larges surfaces atteintes (ou surface concernée), linéaire de côte devant lequel on trouve des surfaces atteintes ou concernées.

Most sources of atmospheric dust on Earth are located in the Northern Hemisphere. The lower dust emissions in the Southern Hemisphere in part limit the supply of micronutrients (primarily soluble iron) to the Southern Ocean, thereby constraining its productivity. Climate and land use change can alter the current distribution of dust source regions on Earth. Can new dust sources be activated in the Southern Hemisphere? Here we show that vegetation loss and dune remobilization in the Southern Kalahari can promote dust emissions comparable to those observed from major contemporary dust sources in the Southern African region. Dust generation experiments support the hypothesis that, in the Southern Kalahari, aeolian deposits that are currently mostly stabilized by savanna vegetation are capable of emitting substantial amounts of dust from interdune areas. We show that dust from these areas is relatively rich in soluble iron, an important micronutrient for ocean productivity. Trajectory analyses show that dust from the Kalahari commonly reaches the Southern Ocean and could therefore enhance its productivity.

Net community production in the Southern Ocean is correlated with simulated local dust deposition, and more so with modeled deposition of soluble iron. Model simulations of the latter two properties are consistent with observations in both hemispheres. These results provide strong evidence that aerosol iron deposition is a first-order control on net community production and export production over large areas of the Southern Ocean.

The isotopic composition of organic carbon buried in marine sediments is an appealing proxy for palaeo CO2 concentrations due to the well-documented effect of CO2 concentrations on carbon fractionation by phytoplankton. However, a number of factors, in addition to CO2 concentrations, influence this fractionation. Included among these factors are cell geometry, in particular surface/volume ratios, growth rate, and the presence of CO2 concentrating mechanisms. Other potentially confounding factors are calcification, diagenesis, and the nature of the growth-rate-limiting factor, e.g. light vs nutrients. Because of these confounding factors, palaeoreconstructions based on the isotopic composition of organic carbon (δ13C) will almost certainly have to be based on the isotopic signatures of organic compounds that can be associated with a single species, or group of physiologically similar species. Long-chain alkenones produced by certain species of coccolithophores may provide a suitable diagnostic marker. By combining the δ13C of the alkenone carbon with the δ13C of coccolith carbon and the Sr/Ca ratio of the coccoliths, it is possible to calculate the extent of carbon fractionation (εp) and estimate growth rates. However, active transport of inorganic carbon tends to make εp insensitive to CO2 concentrations when the ratio of growth rate to CO2 concentration exceeds 0.285/rkg mol–1d–1, where r is the effective spherical radius of the cell in microns. Palaeo CO2 concentrations calculated from alkenone and coccolith δ13C data capture the gross features of CO2 concentrations in the Vostok ice core, but explain only 30–35% of the variance in the latter. The absence of a higher correlation may in part reflect the impact of active transport, particularly during glacial times. The impact of active transport may have been less severe prior to the Pleistocene, since CO2 concentrations are believed to have been higher than present-day values during most of Phanerozoic time.

At sea, wind forcing is responsible for the formation and development of surface waves and represents an important source of near surface turbulence. Therefore, processes related to near surface turbulence and wave breaking, such as sea spray emission and air-sea gas exchange are often parametrised with wind speed. Shipborne wind speed measurements thus provide highly relevant observations. They can, however, be compromised by flow distortion due to the ship's structure and objects nearby the anemometer that modify the airflow, leading to a deflection of the apparent wind direction and positive or negative acceleration of the apparent wind speed. The resulting errors in the estimated true wind speed can be greatly magnified at low wind speeds. For some research ships, correction factors have been derived from computational fluid dynamic models or through direct comparison with wind speed measurements from buoys. These correction factors can, however, loose their validity due to changes of the structures nearby the anemometer and thus require frequent re-evaluation, which is costly in either computational power or ship time. Here we evaluate if global weather forecast model data can be used to quantify the flow distortion bias in shipborne wind speed measurements. The method is tested on data from the Antarctic Circumnavigation Expedition (ACE) on board the R/V Akademik Tryoshnikov, which are compared with ERA-5 reanalysis wind speeds. We find that, depending on the relative wind direction, the relative wind speed and direction measurements are biased by −37 % to +20 % and −13° to +15°, respectively. The resulting error in the true wind speed is +11 % on average but ranges from −5 % to +40 % (5th and 95th percentile). After applying the bias correction, the uncertainty in the true wind speed is reduced to 5 % and depends mainly on the average accuracy of the ERA-5 data over the period of the experiment. The obvious drawback of this approach is the potential intrusion of model bias in the correction factors. We show that this problem can be somewhat mediated when the error propagation in the true wind correction is accounted for and used to weight the observations. We discuss the potential caveats and limitations of this approach and conclude that it can be used to quantify flow distortion bias for ships that operate on a global scale. The method can also be valuable to verify Computational Fluid Dynamic studies of airflow distortion on research vessels.