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Humans and other animals are frequently near-optimal in their ability to integrate noisy and ambiguous sensory data to form robust percepts, which are informed both by sensory evidence and by prior experience about the causal structure of the environment. It is hypothesized that the brain establishes these structures using an internal model of how the observed patterns can be generated from relevant but unobserved causes. In dynamic environments, such integration often takes the form of postdiction , wherein later sensory evidence affects inferences about earlier percepts. As the brain must operate in current time, without the luxury of acausal propagation of information, how does such postdictive inference come about? Here, we propose a general framework for neural probabilistic inference in dynamic models based on the distributed distributional code (DDC) representation of uncertainty, naturally extending the underlying encoding to incorporate implicit probabilistic beliefs about both present and past. We show that, as in other uses of the DDC, an inferential model can be learned efficiently using samples from an internal model of the world. Applied to stimuli used in the context of psychophysics experiments, the framework provides an online and plausible mechanism for inference, including postdictive effects.

Breakthroughs in understanding the neural basis of natural behavior require neural recording and intervention to be paired with high-fidelity multimodal behavioral monitoring. An extensive genetic toolkit for neural circuit dissection, and well-developed neural recording technology, make the mouse a powerful model organism for systems neuroscience. However, most methods for high-bandwidth acquisition of behavioral data in mice rely upon fixed-position cameras and other off-animal devices, complicating the monitoring of animals freely engaged in natural behaviors. Here, we report the development of a lightweight head-mounted camera system combined with head-movement sensors to simultaneously monitor eye position, pupil dilation, whisking, and pinna movements along with head motion in unrestrained, freely behaving mice. The power of the combined technology is demonstrated by observations linking eye position to head orientation; whisking to non-tactile stimulation; and, in electrophysiological experiments, visual cortical activity to volitional head movements.

Spike sorting is an essential first step in most analyses of extracellular in vivo electrophysiological recordings. Here we show that spike-sorting success depends critically on characteristics of coordinated population activity that can differ between anesthetic states. In tetrode recordings from mouse auditory cortex, spike sorting was significantly less successful under ketamine/medetomidine (ket/med) than urethane anesthesia. Surprisingly, this difficulty with sorting under ket/med anesthesia did not appear to result from either greater millisecond-scale burstiness of neural activity or increased coordination of activity among neighboring neurons. Rather, the key factor affecting sorting success appeared to be the amount of coordinated population activity at long time intervals and across large cortical distances. We propose that spike-sorting success is directly dependent on overall coordination of activity, and is most disrupted by large-scale fluctuations in cortical population activity. Reliability of single-unit recording may therefore differ not only between urethane-anesthetized and ket/med-anesthetized states as demonstrated here, but also between synchronized and desynchronized states, asleep and awake states, or inattentive and attentive states in unanesthetized animals.

Simultaneous recordings of many neurons embedded within a recurrently connected cortical network may provide concurrent views into the dynamical processes of that network and thus its computational function. In principle these dynamics might be identi?ed by purely unsupervised statistical means. Here we show that a Hidden Switching Linear Dynamical Systems (HSLDS) model— in which multiple linear dynamical laws approximate a nonlinear and potentially non stationary dynamical process—is able to distinguish different dynamical regimes within single trial motor cortical activity associated with the preparation and initiation of hand movements. The regimes are identi?ed without reference to behavioural or experimental epochs but nonetheless transitions between them correlate strongly with external events whose timing may vary from trial to trial. The HSLDS model also performs better than recent comparable models in predicting the ?ring rate of an isolated neuron based on the ?ring rates of others suggesting that it captures more of the “shared variance” of the data. Thus the method is able to trace the dynamical processes underlying the coordinated evolution of network activity in a way that appears to re?ect its computational role.