191 results on '"Soares, M. B."'
Search Results
52. Construction and characterization of a normalized cDNA library.
- Author
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Soares, M B, primary, Bonaldo, M F, additional, Jelene, P, additional, Su, L, additional, Lawton, L, additional, and Efstratiadis, A, additional
- Published
- 1994
- Full Text
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53. Agglutinins and hemolysins fromBiomphalaria tenagophila snails
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Palatnik, M., Soares, M. B. M., Coelho, M. P., Marques, M., and Mattos, N. O.
- Published
- 1980
- Full Text
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54. Immunization with cytoplasmic repetitive antigen and flagellar repetitive antigen of <e1>Trypanosoma cruzi</e1> stimulates a cellular immune response in mice
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PEREIRA, V. R. A., LORENA, V. M. B., SILVA, A. P. GALVAO DA, COUTINHO, E. M., SILVA, E. D., FERREIRA, A. G. P., MIRANDA, P., KRIEGER, M. A., GOLDENBERG, S., SOARES, M. B. P., and CORREA-OLIVEIRA, R.
- Abstract
In previous studies, we demonstrated that CRA and FRA recombinant proteins, used for diagnosis of Chagas' disease, elicited a humoral immune response in susceptible and resistant mice. To understand better the immune response to these proteins, we have evaluated, the cellular immune response in CRA- and in FRA-immunized BALB/c and C57BL/6 mice. A specific cellular lymphoproliferative response was observed in both strains of mice. Spleen cell cultures mainly from CRA-immunized C57BL/6 and FRA-immunized BALB/c mice produced high levels of IFN-γ, indicating the induction of a Type 1 immune response. Regarding the T cell subsets, CD4
+ T cells were the major source of IFN-γ in CRA- and FRA-immunized mice. These results suggest that CRA and FRA are important immunogens in inducing a Type 1 immune response and that they may be considered as potential vaccine antigens.- Published
- 2004
55. Automated construction of high-density comparative maps between rat, human, and mouse.
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Kwitek, A E, Tonellato, P J, Chen, D, Gullings-Handley, J, Cheng, Y S, Twigger, S, Scheetz, T E, Casavant, T L, Stoll, M, Nobrega, M A, Shiozawa, M, Soares, M B, Sheffield, V C, and Jacob, H J
- Abstract
Animal models have been used primarily as surrogates for humans, having similar disease-based phenotypes. Genomic organization also tends to be conserved between species, leading to the generation of comparative genome maps. The emergence of radiation hybrid (RH) maps, coupled with the large numbers of available Expressed Sequence Tags (ESTs), has revolutionized the way comparative maps can be built. We used publicly available rat, mouse, and human data to identify genes and ESTs with interspecies sequence identity (homology), identified their UniGene relationships, and incorporated their RH map positions to build integrated comparative maps with >2100 homologous UniGenes mapped in more than one species (approximately 6% of all mammalian genes). The generation of these maps is iterative and labor intensive; therefore, we developed a series of computer tools (not described here) based on our algorithm that identifies anchors between species and produces printable and on-line clickable comparative maps that link to a wide variety of useful tools and databases. The maps were constructed using sequence-based comparisons, thus creating "hooks" for further sequence-based annotation of human, mouse, and rat sequences. Currently, this map enables investigators to link the physiology of the rat with the genetics of the mouse and the clinical significance of the human.
- Published
- 2001
- Full Text
- View/download PDF
56. Generation of a high-density rat EST map.
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Scheetz, T E, Raymond, M R, Nishimura, D Y, McClain, A, Roberts, C, Birkett, C, Gardiner, J, Zhang, J, Butters, N, Sun, C, Kwitek-Black, A, Jacob, H, Casavant, T L, Soares, M B, and Sheffield, V C
- Abstract
We have developed a high-density EST map of the rat, consisting of >11,000 ESTs. These ESTs were placed on a radiation hybrid framework map of genetic markers spanning all 20 rat autosomes, plus the X chromosome. The framework maps have a total size of approximately 12,400 cR, giving an average correspondence of 240 kb/cR. The frameworks are all LOD 3 chromosomal maps consisting of 775 radiation-hybrid-mapped genetic markers and ESTs. To date, we have generated radiation-hybrid-mapping data for >14,000 novel ESTs identified by our Rat Gene Discovery and Mapping Project (http://ratEST.uiowa.edu), from which we have placed >11,000 on our framework maps. To minimize mapping errors, ESTs were mapped in duplicate and consensus RH vectors produced for use in the placement procedure. This EST map was then used to construct high-density comparative maps between rat and human and rat and mouse. These maps will be a useful resource for positional cloning of genes for rat models of human diseases and in the creation and verification of a tiling set of map order for the upcoming rat-genome sequencing.
- Published
- 2001
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57. High-resolution mapping and transcript identification at the progressive epilepsy with mental retardation locus on chromosome 8p.
- Author
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Ranta, S, Lehesjoki, A E, de Fatima Bonaldo, M, Knowles, J A, Hirvasniemi, A, Ross, B, de Jong, P J, Soares, M B, de la Chapelle, A, and Gilliam, T C
- Abstract
Progressive epilepsy with mental retardation (EPMR) is an autosomal recessive central nervous system disorder characterized by childhood onset epilepsy and subsequent mental retardation. The locus for EPMR has been mapped to human chromosome 8p23. We recently reported the construction of a YAC contig across the 4 centimorgan minimum genetic region that harbors the disease locus. We now report further delineation of the critical region to <700 kb. Our mapping strategy relied on the identification of nine novel microsatellite markers and the construction of a complete BAC contig across the critical region. Several partial gene sequences have been identified from the region and are being analyzed as candidate genes for EPMR.
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- 1997
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58. RNA-mediated gene duplication: the rat preproinsulin I gene is a functional retroposon
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Soares, M B, Schon, E, Henderson, A, Karathanasis, S K, Cate, R, Zeitlin, S, Chirgwin, J, and Efstratiadis, A
- Abstract
Rats and mice have two, equally expressed, nonallelic genes encoding preproinsulin (genes I and II). Cytological hybridization with metaphase chromosomes indicated that both genes reside on rat chromosome I but are approximately 100,000 kilobases apart. In mice the two genes reside on two different chromosomes. DNA sequence comparisons of the gene-flanking regions in rats and mice indicated that the preproinsulin gene I has lost one of the two introns present in gene II, is flanked by a long (41-base) direct repeat, and has a remnant of a polydeoxyadenylate acid tract preceding the downstream direct repeat. These structural features indicated that gene I was generated by an RNA-mediated duplication-transposition event involving a transcript of gene II which was initiated upstream from the normal capping site. Sequence divergence analysis indicated that the pair of the original gene and its retroposed, but functional, counterpart (which appeared about 35 million years ago) is maintained by strong negative selection operating primarily on the segments encoding the chains of the mature hormone, whereas the segments encoding the parts of the polypeptide that are eliminated during processing and also the introns and the flanking regions are evolving neutrally.
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- 1985
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59. Expression of the insulin-like growth factor II gene in the choroid plexus and the leptomeninges of the adult rat central nervous system.
- Author
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Stylianopoulou, F, Herbert, J, Soares, M B, and Efstratiadis, A
- Abstract
The rat insulin-like growth factor II gene, encoding a fetal somatomedin, expresses a multitranscript family in embryonic/fetal tissues and in the adult brain and spinal cord. By performing in situ hybridization on tissue sections of adult brain and spinal cord, we have found that these transcripts are not expressed in neural or glial cells but are expressed in the epithelium of the choroid plexus of each cerebral ventricle and in the leptomeninges. We propose that the choroidal epithelial cells synthesize and secrete insulin-like growth factor II into the cerebrospinal fluid.
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- 1988
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60. Transplanted Bone Marrow Cells Repair Heart Tissue and Reduce Myocarditis in Chronic Chagasic Mice
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Soares, M. B. P., Lima, R. S., Rocha, L. L., Takyia, C. M., Pontes-De-Carvalho, L., Antonio Campos de Carvalho, and Ribeiro-Dos-Santos, R.
61. Water treatment for rural areas by slow sand filtration
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Pizzolatti, B. S., Soares, M. B. D., Michelan, D. C. G. S., Romero, L. G., and Maurício Luiz Sens
62. Cashew nut meal in laying diets for Japanese quails,Farelo de amêndoa da castanha de caju na alimentação de codornas japonesas na fase de postura1
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Soares, M. B., Fuentes, M. D. F. F., Freitas, E. R., Lopes, I. R. V., Moreira, R. F., Sucupira, F. S., Nádia de Melo Braz, and Lima, R. C.
63. The status, quality, and expansion of the NIH full-length cDNA project: The Mammalian Gene Collection (MGC)
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Gerhard, D. S., Wagner, L., Feingold, E. A., Shenmen, C. M., Grouse, L. H., Schuler, G., Klein, S. L., Old, S., Rasooly, R., Good, P., Guyer, M., Peck, A. M., Derge, J. G., Lipman, D., Collins, F. S., Jang, W., Sherry, S., Feolo, M., Misquitta, L., Lee, E., Rotmistrovsky, K., Greenhut, S. F., Schaefer, C. F., Buetow, K. H., Bonner, T. I., Haussler, D., Kent, J., Diekhans, M., Furey, T., Brent, M., Prange, C., Schreiber, K., Shapiro, N., Bhat, N. K., Hopkins, R. F., Hsie, F., Driscoll, T., Soares, M. B., Bonaldo, M. F., Casavant, T. L., Scheetz, T. E., Brownstein, M. J., Usdin, T. B., Toshiyuki, S., Carninci, P., Piao, Y., Dudekula, D. B., Ko, M. S. H., Kawakami, K., Suzuki, Y., Sugano, S., Gruber, C. E., Smith, M. R., Simmons, B., Moore, T., Waterman, R., Johnson, S. L., Ruan, Y., Lin Wei, C., Mathavan, S., Gunaratne, P. H., Wu, J., Garcia, A. M., Hulyk, S. W., Fuh, E., Yuan, Y., Sneed, A., Kowis, C., Hodgson, A., Muzny, D. M., John McPherson, Gibbs, R. A., Fahey, J., Helton, E., Ketteman, M., Madan, A., Rodrigues, S., Sanchez, A., Whiting, M., Young, A. C., Wetherby, K. D., Granite, S. J., Kwong, P. N., Brinkley, C. P., Pearson, R. L., Bouffard, G. G., Blakesly, R. W., Green, E. D., Dickson, M. C., Rodriguez, A. C., Grimwood, J., Schmutz, J., Myers, R. M., Butterfield, Y. S. N., Griffith, M., Griffith, O. L., Krzywinski, M. I., Liao, N., Morrin, R., Palmquist, D., Petrescu, A. S., Skalska, U., Smailus, D. E., Stott, J. M., Schnerch, A., Schein, J. E., Jones, S. J. M., Holt, R. A., Baross, A., Marra, M. A., Clifton, S., Makowski, K. A., Bosak, S., and Malek, J.
64. The use of biodiversity as source of new chemical entities against defined molecular targets for treatment of malaria, tuberculosis, and T-cell mediated diseases - A Review
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Luiz Basso, Pereira Da Silva, L. H., Fett-Neto, A. G., Azevedo Jr, W. F., Moreira, Í D. S., Palma, M. S., Calixto, J. B., Astolfi Filho, S., Ribeiro Dos Santos, R., Pereira Soares, M. B., and Santos, D. S.
65. Adult midgut expressed sequence tags from the tsetse fly Glossina morsitans morsitans and expression analysis of putative immune response genes
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Lehane, M. J., Serap Aksoy, Gibson, W., Kerhornou, A., Berriman, M., Hamilton, J., Soares, M. B., Bonaldo, M. F., Lehane, S., and Hall, N.
66. Automated construction of high-density comparative maps between rat, human, and mouse
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Kwitek, A. E., Tonellato, P. J., Chen, D., Gullings-Handley, J., Cheng, Y. S., Twigger, S., Todd Scheetz, Casavant, T. L., Stoll, M., Nobrega, M. A., Shiozawa, M., Soares, M. B., Sheffield, V. C., and Jacob, H. J.
67. A new source of (R)-limonene and rotundifolone from leaves of Lippia pedunculosa (Verbenaceae) and their trypanocidal properties
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Menezes, L. R. A., Santos, N. N., Meira, C. S., Ferreira Dos Santos, J. A., Guimarães, E. T., Soares, M. B. P., Nepel, A., Andersson Barison, and Costa, E. V.
68. Backwashed slow sand filtration for water supply during droughts periods in animal production
- Author
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Soares, M. B. D., Pizzolatti, B. S., Michelan, D. C. G. S., Luis G. Romero-Esquivel, and Sens, M. L.
69. Erratum: Uptake of apoptotic cells drives the growth of a pathogenic trypanosome in macrophages (Nature (2000) 403 (199-203))
- Author
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Freire-De-Lima, C. G., Nascimento, D. O., Soares, M. B. P., Patricia Bozza, Castro- Faria-Neto, H. C., Mello, F. G., Dosreis, G. A., and Lopes, M. F.
70. Molecular profiling of clinical tissue specimens: Feasibility and applications
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Emmert-Buck, M. R., Strausberg, R. L., Krizman, D. B., Bonaldo, M. F., Bonner, R. F., Bostwick, D. G., Brown, M. R., Buetow, K. H., Chuaqui, R. F., Cole, K. A., Duray, P. H., Englert, C. R., Gillespie, J. W., Greenhut, S., Grouse, L., Hillier, L. W., Katz, K. S., Klausner, R. D., Kuznetzov, V., Alex Lash, Lennon, G., Linehan, W. M., Liotta, L. A., Marra, M. A., Munson, P. J., Omstein, D. K., Prabhu, V. V., Prange, C., Schuler, G. D., Soares, M. B., Tolstoshev, C. M., Vocke, C. D., and Waterston, R. H.
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Male ,Special Article ,DNA, Complementary ,Genome ,Polymorphism, Genetic ,Databases as Topic ,Genes ,Genetic Techniques ,Feasibility Studies ,Gene Expression ,Humans ,Prostatic Neoplasms
71. Molecular pathogenesis of B-cell chronic lymphocytic leukemia: Analysis of 13q14 chromosomal deletions
- Author
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Migliazza, A., Cayanis, E., Bosch-Albareda, F., Komatsu, H., Martinotti, S., Toniato, E., Kalachikov, S., Bonaldo, M. F., Jelenc, P., Ye, X., Rzhetsky, A., Qu, X., Chien, M., Inghirami, G., Gaidano, G., umberto vitolo, Saglio, G., Resegotti, L., Zhang, P., Soares, M. B., Russo, J., Fischer, S. G., Edelman, I. S., Efstratiadis, A., and Dalla-Favera, R.
72. Epigenetic reprogramming as a key contributor to melanocyte malignant transformation
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Molognoni, F., Cruz, A. T., Meliso, F. M., Morais, A. S., Souza, C. F., Xander, P., Bischof, J. M., Costa, F. F., Soares, M. B., Gangning Liang, Jones, P. A., and Jasiulionis, M. G.
73. Advancing climate services in South Asia
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Daron, J., Soares, M. B., Janes, T., Colledge, F., Srinivasan, G., Agarwal, A., Hewitt, C., Richardson, K., Nepal, Santosh, Shrestha, M. S., Rasul, G., Suckall, N., Harrison, B., Oakes, R. L., Corbelli, D., Daron, J., Soares, M. B., Janes, T., Colledge, F., Srinivasan, G., Agarwal, A., Hewitt, C., Richardson, K., Nepal, Santosh, Shrestha, M. S., Rasul, G., Suckall, N., Harrison, B., Oakes, R. L., and Corbelli, D.
74. Advancing climate services in South Asia
- Author
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Daron, J., Soares, M. B., Janes, T., Colledge, F., Srinivasan, G., Agarwal, A., Hewitt, C., Richardson, K., Nepal, Santosh, Shrestha, M. S., Rasul, G., Suckall, N., Harrison, B., Oakes, R. L., Corbelli, D., Daron, J., Soares, M. B., Janes, T., Colledge, F., Srinivasan, G., Agarwal, A., Hewitt, C., Richardson, K., Nepal, Santosh, Shrestha, M. S., Rasul, G., Suckall, N., Harrison, B., Oakes, R. L., and Corbelli, D.
75. Electroconvulsive therapy in treatment resistant bipolar disorder - Case reports
- Author
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Soares, M. B., Moreno, R. A., and Moreno, D. H.
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- 2000
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- View/download PDF
76. A Laboratory Guide to RNA: Isolation, Analysis and Synthesis (Paul A. Krieg, ed.)
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Soares, M. B.
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- 1997
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77. The Trypanosoma cruzi ribosomal RNA-encoding gene: analysis of promoter and upstream intergenic spacer sequences
- Author
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Dietrich, P., Soares, M. B., Affonso, M. H. T., and Floeter-Winter, L. M.
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- 1993
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- View/download PDF
78. Scoping the potential usefulness of seasonal climate forecasts for solar power management
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Andrea Alessandri, Alberto Troccoli, Matteo De Felice, Marta Bruno Soares, De Felice, M., Soares, M. B., Alessandri, A., and Troccoli, A.
- Subjects
bepress|Physical Sciences and Mathematics ,Climate ,Climate services ,Forecasting ,Solar power ,Computer science ,EarthArXiv|Physical Sciences and Mathematics|Environmental Sciences ,media_common.quotation_subject ,020209 energy ,bepress|Physical Sciences and Mathematics|Earth Sciences ,02 engineering and technology ,EarthArXiv|Physical Sciences and Mathematics|Earth Sciences ,7. Clean energy ,Climate service ,0202 electrical engineering, electronic engineering, information engineering ,Production (economics) ,0601 history and archaeology ,Quality (business) ,bepress|Physical Sciences and Mathematics|Environmental Sciences ,bepress|Physical Sciences and Mathematics|Environmental Sciences|Sustainability ,media_common ,060102 archaeology ,EarthArXiv|Physical Sciences and Mathematics|Environmental Sciences|Sustainability ,Renewable Energy, Sustainability and the Environment ,business.industry ,Photovoltaic system ,06 humanities and the arts ,Environmental economics ,Solar energy ,021001 nanoscience & nanotechnology ,Renewable energy ,EarthArXiv|Physical Sciences and Mathematics ,Nameplate capacity ,13. Climate action ,Electricity ,business ,0210 nano-technology - Abstract
Solar photovoltaic energy is widespread worldwide and particularly in Europe, which became in 2016 the first region in the world to pass the 100 GW of installed capacity. As with all the renewable energy sources, for an effective management of solar power, it is essential to have reliable and accurate information about weather/climate conditions that affect the production of electricity. Operations in the solar energy industry are normally based on daily (or intra-daily) forecasts. Nevertheless, information about the incoming months can be relevant to support and inform operational and maintenance activities. This paper discusses a methodology to assess whether a seasonal climate forecast can provide a useful prediction for a specific sector, in this paper the European solar power industry. After evaluating the quality of the forecasts in providing probabilistic information for solar radiation, we describe how to assess their potential usefulness for a generic user by proposing an approach that takes into account not only their accuracy but also other potentially relevant factors. This approach is called index of opportunity and is then illustrated by presenting an example for the European solar power sector. The index of opportunity provides indications about where and when seasonal climate forecasts can benefit the decision-making in the photovoltaic sector. Even more importantly, it suggests an approach on how to evaluate their usefulness for the user's decision-making. This approach has the advantage of not limiting the definition of the usefulness only to the quality of the forecasts but rather considering, in an explicit way, all the factors that must be combined with the forecast's quality to define what is useful or not for the user.
- Published
- 2019
79. The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts
- Author
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Yamasaki, C., Murakami, K., Fujii, Y., Sato, Y., Harada, E., Takeda, J., Taniya, T., Sakate, R., Kikugawa, S., Shimada, M., Tanino, M., Koyanagi, K.O., Barrero, R.A., Gough, C., Chun, H., Habara, T., Hanaoka, H., Hayakawa, Y., Hilton, P.B., Kaneko, Y., Kanno, M., Kawahara, Y., Kawamura, T., Matsuya, A., Nagata, N., Nishikata, K., Noda, A.O., Nurimoto, S., Saichi, N., Sakai, H., Sanbonmatsu, R., Shiba, R., Suzuki, M., Takabayashi, K., Takahashi, A., Tamura, T., Tanaka, M., Tanaka, S., Todokoro, F., Yamaguchi, K., Yamamoto, N., Okido, T., Mashima, J., Hashizume, A., Jin, L., Lee, K., Lin, Y., Nozaki, A., Sakai, K., Tada, M., Miyazaki, S., Makino, T., Ohyanagi, H., Osato, N., Tanaka, N., Suzuki, Y., Ikeo, K., Saitou, N., Sugawara, H., O'Donovan, C., Kulikova, T., Whitfield, E., Halligan, B., Shimoyama, M., Twigger, S., Yura, K., Kimura, K., Yasuda, T., Nishikawa, T., Akiyama, Y., Motono, C., Mukai, Y., Nagasaki, H., Suwa, M., Horton, P., Kikuno, R., Ohara, O., Lancet, D., Eveno, E., Graudens, E., Imbeaud, S., Debily, M., Hayashizaki, Y., Amid, C., Han, M., Osanger, A., Endo, T., Thomas, M.A., Hirakawa, M., Makalowski, W., Nakao, M., Kim, N., Yoo, H., de Souza, S.J., Bonaldo, M.D.F., Niimura, Y., Kuryshev, V., Schupp, I., Wiemann, S., Bellgard, M., Shionyu, M., Jia, L., Thierry-Mieg, D., Thierry-Mieg, J., Wagner, L., Zhang, Q., Go, M., Minoshima, S., Ohtsubo, M., Hanada, K., Tonellato, P., Isogai, T., Zhang, J., Lenhard, B., Kim, S., Chen, Z., Hinz, U., Estreicher, A., Nakai, K., Makalowska, I., Hide, W., Tiffin, N., Wilming, L., Chakraborty, R., Soares, M.B., Chiusano, M.L., Auffray, C., Yamaguchi-Kabata, Y., Itoh, T., Hishiki, T., Fukuchi, S., Nishikawa, K., Sugano, S., Nomura, N., Tateno, Y., Imanishi, T., Gojobori, T., Genexpress, Centre National de la Recherche Scientifique (CNRS), Yamasaki, C., Murakami, K., Fujii, Y., Sato, Y., Harada, E., Takeda, J., Taniya, T., Sakate, R., Kikugawa, S., Shimada, M., Tanino, M., Koyanagi, K. O., Barrero, R. A., Gough, C., Chun, H. W., Habara, T., Hanaoka, H., Hayakawa, Y., Hilton, P. B., Kaneko, Y., Kanno, M., Kawahara, Y., Kawamura, T., Matsuya, A., Nagata, N., Nishikata, K., Noda, A. O., Nurimoto, S., Saichi, N., Sakai, H., Sanbonmatsu, R., Shiba, R., Suzuki, M., Takabayashi, K., Takahashi, A., Tamura, T., Tanaka, M., Tanaka, S., Todokoro, F., Yamaguchi, K., Yamamoto, N., Okido, T., Mashima, J., Hashizume, A., Jin, L., Lee, K. B., Lin, Y. C., Nozaki, A., Sakai, K., Tada, M., Miyazaki, S., Makino, T., Ohyanagi, H., Osato, N., Tanaka, N., Suzuki, Y., Ikeo, K., Saitou, N., Sugawara, H., Odonovan, C., Kulikova, T., Whitfield, E., Halligan, B., Shimoyama, M., Twigger, S., Yura, K., Kimura, K., Yasuda, T., Nishikawa, T., Akiyama, Y., Motono, C., Mukai, Y., Nagasaki, H., Suwa, M., Horton, P., Kikuno, R., Ohara, O., Lancet, D., Eveno, E., Graudens, E., Imbeaud, S., Debily, M. A., Hayashizaki, Y., Amid, C., Han, M., Osanger, A., Endo, T., Thomas, M. A., Hirakawa, M., Makalowski, W., Nakao, M., Kim, N. S., Yoo, H. S., De Souza, S. J., Bonaldo Mde, F., Niimura, Y., Kuryshev, V., Schupp, I., Wiemann, S., Bellgard, M., Shionyu, M., Jia, L., Thierry Mieg, D., Thierry Mieg, J., Wagner, L., Zhang, Q., Go, M., Minoshima, S., Ohtsubo, M., Hanada, K., Tonellato, P., Isogai, T., Zhang, J., Lenhard, B., Kim, S., Chen, Z., Hinz, U., Estreicher, A., Nakai, K., Makalowska, I., Hide, W., Tiffin, N., Wilming, L., Chakraborty, R., Soares, M. B., Chiusano, MARIA LUISA, Auffray, C., Yamaguchi Kabata, Y., Itoh, T., Hishiki, T., Fukuchi, S., Nishikawa, K., Sugano, S., Nomura, N., Tateno, Y., Imanishi, T., and Gojobori, T.
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DNA, Complementary ,[SDV]Life Sciences [q-bio] ,Pseudogene ,Locus (genetics) ,Biology ,computer.software_genre ,User-Computer Interface ,03 medical and health sciences ,Annotation ,0302 clinical medicine ,Databases, Genetic ,Genetics ,Animals ,Humans ,Gene family ,RNA, Messenger ,Gene ,database ,030304 developmental biology ,Internet ,0303 health sciences ,Human genome ,Database ,Alternative splicing ,Chromosome Mapping ,Proteins ,Articles ,Gene expression profiling ,Genes ,transcriptome ,computer ,030217 neurology & neurosurgery - Abstract
International audience; Here we report the new features and improvements in our latest release of the H-Invitational Database (H-InvDB; http://www.h-invitational.jp/), a comprehensive annotation resource for human genes and transcripts. H-InvDB, originally developed as an integrated database of the human transcriptome based on extensive annotation of large sets of full-length cDNA (FLcDNA) clones, now provides annotation for 120 558 human mRNAs extracted from the International Nucleotide Sequence Databases (INSD), in addition to 54 978 human FLcDNAs, in the latest release H-InvDB_4.6. We mapped those human transcripts onto the human genome sequences (NCBI build 36.1) and determined 34 699 human gene clusters, which could define 34 057 (98.1%) protein-coding and 642 (1.9%) non-protein-coding loci; 858 (2.5%) transcribed loci overlapped with predicted pseudogenes. For all these transcripts and genes, we provide comprehensive annotation including gene structures, gene functions, alternative splicing variants, functional non-protein-coding RNAs, functional domains, predicted sub cellular localizations, metabolic pathways, predictions of protein 3D structure, mapping of SNPs and microsatellite repeat motifs, co-localization with orphan diseases, gene expression profiles, orthologous genes, protein-protein interactions (PPI) and annotation for gene families. The current H-InvDB annotation resources consist of two main views: Transcript view and Locus view and eight sub-databases: the DiseaseInfo Viewer, H-ANGEL, the Clustering Viewer, G-integra, the TOPO Viewer, Evola, the PPI view and the Gene family/group.
- Published
- 2007
80. Therapy with mesenchymal stromal cells or conditioned medium reverse cardiac alterations in a high-fat diet-induced obesity model.
- Author
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Daltro PS, Barreto BC, Silva PG, Neto PC, Sousa Filho PHF, Santana Neta D, Carvalho GB, Silva DN, Paredes BD, de Alcantara AC, Freitas LAR, Couto RD, Santos RR, Souza BSF, Soares MBP, and Macambira SG
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- Animals, Arrhythmias, Cardiac etiology, Arrhythmias, Cardiac therapy, Cytokines metabolism, Fibrosis genetics, Fibrosis pathology, GATA4 Transcription Factor genetics, Gene Expression drug effects, Heart drug effects, Intercellular Signaling Peptides and Proteins metabolism, Male, Mesenchymal Stem Cells cytology, Mesenchymal Stem Cells physiology, Mice, Inbred BALB C, Myocardium pathology, Obesity etiology, Culture Media, Conditioned pharmacology, Diet, High-Fat adverse effects, Heart physiopathology, Mesenchymal Stem Cell Transplantation methods, Obesity physiopathology
- Abstract
Background: Obesity is associated with numerous cardiac complications, including arrhythmias, cardiac fibrosis, remodeling and heart failure. Here we evaluated the therapeutic potential of mesenchymal stromal cells (MSCs) and their conditioned medium (CM) to treat cardiac complications in a mouse model of high-fat diet (HFD)-induced obesity., Methods: After obesity induction and HFD withdrawal, obese mice were treated with MSCs, CM or vehicle. Cardiac function was assessed using electrocardiography, echocardiography and treadmill test. Body weight and biochemical parameters were evaluated. Cardiac tissue was used for real time (RT)-polymerase chain reaction (PCR) and histopathologic analysis., Results/discussion: Characterization of CM by protein array showed the presence of different cytokines and growth factors, including chemokines, osteopontin, cystatin C, Serpin E1 and Gas 6. HFD-fed mice presented cardiac arrhythmias, altered cardiac gene expression and fibrosis reflected in physical exercise incapacity associated with obesity and diabetes. Administration of MSCs or CM improved arrhythmias and exercise capacity. This functional improvement correlated with normalization of GATA4 gene expression in the hearts of MSC- or CM-treated mice. The gene expression of connexin 43, troponin I, adiponectin, transforming growth factor (TGF) β, peroxisome proliferator activated receptor gamma (PPARγ), insulin-like growth factor 1 (IGF-1), matrix metalloproteinase-9 (MMP9) and tissue inhibitor of metalloproteinases 1 (TIMP1) were significantly reduced in MSCs, but not in CM-treated mice. Moreover, MSC or CM administration reduced the intensity of cardiac fibrosis., Conclusion: Our results suggest that MSCs and CM have a recovery effect on cardiac disturbances due to obesity and corroborate to the paracrine action of MSCs in heart disease models., (Copyright © 2017 International Society for Cellular Therapy. Published by Elsevier Inc. All rights reserved.)
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- 2017
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81. The triterpenoid lupeol attenuates allergic airway inflammation in a murine model.
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Vasconcelos JF, Teixeira MM, Barbosa-Filho JM, Lúcio AS, Almeida JR, de Queiroz LP, Ribeiro-Dos-Santos R, and Soares MB
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- Alveolitis, Extrinsic Allergic pathology, Animals, Anti-Inflammatory Agents, Non-Steroidal isolation & purification, Antibodies analysis, Antibodies metabolism, Bronchoalveolar Lavage Fluid cytology, Cytokines biosynthesis, Male, Mice, Mice, Inbred BALB C, Ovalbumin immunology, Pentacyclic Triterpenes, T-Lymphocytes, Helper-Inducer drug effects, Triterpenes isolation & purification, Alveolitis, Extrinsic Allergic drug therapy, Anti-Inflammatory Agents, Non-Steroidal therapeutic use, Triterpenes therapeutic use
- Abstract
Asthma is a chronic inflammatory disease of the airways associated with a Th2 immune response. Despite their side effects, corticosteroids are the most used and effective drugs for treatment of asthma. In this work we investigated the efficacy of lupeol, a triterpenoid isolated from Lonchocarpus araripensis [corrected] Benth. (Fabaceae), in the treatment of bronchial asthma in BALB/c mice immunized with ovalbumin. Administration of lupeol caused the reduction of cellularity and eosinophils in the bronchoalveolar lavage fluid. Treatment with lupeol also reduced the production of mucus and overall inflammation in the lung. Levels of Type II cytokines IL-4, IL-5 and IL-13 were significantly reduced in mice treated with lupeol, an effect that was similar to that observed in dexamethasone-treated mice. In contrast, IgE production was not significantly altered after treatment with lupeol. In conclusion, our results demonstrate that lupeol attenuates the alterations' characteristics of allergic airway inflammation. The investigation of the mechanisms of action of this molecule may contribute for the development of new drugs for the treatment of asthma.
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- 2008
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82. A new chapter opens in anti-inflammatory treatments: the antidepressant bupropion lowers production of tumor necrosis factor-alpha and interferon-gamma in mice.
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Brustolim D, Ribeiro-dos-Santos R, Kast RE, Altschuler EL, and Soares MB
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- Adrenergic beta-Antagonists pharmacology, Animals, Anti-Inflammatory Agents, Non-Steroidal therapeutic use, Antidepressive Agents, Second-Generation pharmacology, Antidepressive Agents, Second-Generation therapeutic use, Bupropion therapeutic use, Dopamine Antagonists pharmacology, Interleukin-1 blood, Leukocyte Count, Lipopolysaccharides pharmacology, Male, Mice, Mice, Inbred BALB C, Nitric Oxide blood, Platelet Count, Shock, Septic drug therapy, Shock, Septic metabolism, Survival Analysis, Anti-Inflammatory Agents, Non-Steroidal pharmacology, Bupropion pharmacology, Interferon-gamma blood, Tumor Necrosis Factor-alpha metabolism
- Abstract
In a wide range of human diseases of inflammatory nature like Crohn's disease, pathology is mediated in part by pro-inflammatory cytokines like tumor necrosis factor-alpha (TNF) or interferon-gamma. We show here that a commonly used generic antidepressant bupropion, in wide use worldwide to treat depression in humans for a decade now, profoundly lowers levels of TNF, interferon-gamma, and interleukin-1 beta in vivo, in a mouse lipopolysaccharide (LPS) induced inflammation model. Mice challenged with an otherwise lethal dose of LPS were protected by bupropion and levels of the anti-inflammatory cytokine interleukin-10 were increased. Previous data in rodents and humans indicate antidepressant effects of bupropion are mediated by its weak reuptake inhibition of norepinephrine and dopamine. Concordant with this, TNF suppression by bupropion in our mouse LPS model was largely abrogated by beta-adrenergic or dopamine D1 receptor antagonists but not by a D2 antagonist. TNF synthesis is controlled by an inverse relationship with intracellular cyclic adenosine monophosphate (cAMP) and stimulation of either beta-adrenoreceptors or D1 dopaminergic receptors result in increased cAMP but stimulation of D2 receptors lowers cAMP. We conclude that bupropion may suppress TNF synthesis by mediating increased signaling at beta-adrenoreceptors and D1 receptors, resulting in increased cAMP that inhibits TNF synthesis. Bupropion is well tolerated also in non-psychiatric populations and has less risk with long term use than current anti-inflammatory, immunosuppressive or TNF suppressive treatments such as prednisone, azathioprine, infliximab, or methotrexate. New anti-inflammatory treatments are needed. We believe a new chapter in antiinflammatory, TNF lowering treatment of disease has been opened. Bupropion's use for this in humans should be explored.
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- 2006
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83. Physalins B, F and G, seco-steroids purified from Physalis angulata L., inhibit lymphocyte function and allogeneic transplant rejection.
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Soares MB, Brustolim D, Santos LA, Bellintani MC, Paiva FP, Ribeiro YM, Tomassini TC, and Ribeiro Dos Santos R
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- Animals, Cell Proliferation drug effects, Concanavalin A pharmacology, Female, Graft Rejection immunology, Heart Transplantation pathology, Interleukin-2 metabolism, Lymphocytes immunology, Lymphocytes metabolism, Male, Mice, Mice, Inbred BALB C, Mice, Inbred C3H, Mice, Inbred C57BL, Mice, Inbred CBA, Mifepristone pharmacology, Spleen cytology, Spleen drug effects, Spleen immunology, Graft Rejection prevention & control, Heart Transplantation immunology, Immunosuppressive Agents pharmacology, Lymphocytes drug effects, Physalis, Secosteroids pharmacology
- Abstract
Physalis angulata is a solanaceae widely used in folk medicine in various tropical countries in the world. We have previously described that seco-steroids (physalins) purified from P. angulata are potent inhibitors of macrophage activation, blocking the production of pro-inflammatory cytokines and LPS-induced lethality. Herein we investigated the immunomodulatory activities of these substances in lymphocyte proliferation and cytokine production and in transplantation. The addition of physalins B, F or G to concanavalin A-activated splenocyte cultures induced a concentration-dependent inhibition of proliferation. Physalin B also inhibited IL-2 production by Con A-activated spleen cells. The addition of 2 mug/ml physalin B to mixed lymphocyte reaction (MLR) caused a 100% inhibition of proliferation. More importantly, treatment of mice with physalin B, F or G prevented the rejection of allogeneic heterotopic heart transplant. Our results demonstrate the suppressive activity of physalins B, F and G in lymphocyte function and indicate the potential use of physalins as immunosuppressive agents for treatments of pathologies in which inhibition of immune responses is desired.
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- 2006
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84. The pathogenesis of Chagas' disease: when autoimmune and parasite-specific immune responses meet.
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Soares MB, Pontes-De-Carvalho L, and Ribeiro-Dos-Santos R
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- Animals, Chagas Cardiomyopathy pathology, Chronic Disease, Humans, Hypersensitivity, Delayed immunology, Immune Tolerance, Mice, Time Factors, Autoimmunity, Chagas Cardiomyopathy immunology, Trypanosoma cruzi immunology
- Abstract
Chagas' disease is a major health problem in Latin America, where it constitutes one of the leading causes of heart failure. About one fourth of Trypanosoma cruzi-infected individuals develop chronic chagasic cardiomyopathy (CChC), the most severe form of the disease. CChC is histologically characterized by the presence of multifocal inflammatory infiltrates in the heart, composed mainly by mononuclear cells, usually adhered to myocytes and leading to myocytolysis, and frequently by interstitial fibrosis. The pathogenesis of CChC is still unclear, despite intense investigations both in human beings and in animal models of the disease. Although tissue parasitism is rare in the chronic phase of infection, an immune response targeted to persistent parasites or parasite antigens is suggested, by some authors, as the pathogenic mechanism of CChC. Other researchers affirm that the lack of correlation between tissue parasitism and intensity of inflammation suggests, along with the presence of autoreactive immune responses, that CChC results from the action of an autoimmune response. Herein we review reports from the literature and our own data, which together indicate, on one hand, the participation of parasite-specific immune responses and, on the other hand, clearly demonstrate the participation of heart-specific immune responses in the pathogenesis of CChC. Moreover, multiple factors may determine whether an individual in the indeterminate form of the disease will develop CChC. The mechanisms by which T. cruzi breaks immunological tolerance to heart antigens are also discussed.
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- 2001
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85. Molecular characterisation of aureocin A70, a multi-peptide bacteriocin isolated from Staphylococcus aureus.
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Netz DJ, Sahl HG, Marcelino R, dos Santos Nascimento J, de Oliveira SS, Soares MB, and do Carmo de Freire Bastos M
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- Amino Acid Sequence, Bacterial Proteins chemistry, Bacterial Proteins genetics, Bacterial Proteins isolation & purification, Bacteriocins chemistry, Base Sequence, Chlortetracycline, Chromatography, High Pressure Liquid, Drug Combinations, Molecular Sequence Data, Open Reading Frames genetics, Operon genetics, Penicillin G, Peptides chemistry, Phenotype, Plasmids genetics, Restriction Mapping, Sequence Alignment, Sulfamethazine, Bacteriocins genetics, Bacteriocins isolation & purification, Peptides isolation & purification, Staphylococcus aureus chemistry, Staphylococcus aureus genetics
- Abstract
Staphylococcus aureus A70 produces a heat-stable bacteriocin designated aureocin A70. Aureocin A70 is encoded within a mobilisable 8 kb plasmid, pRJ6, and is active against Listeria monocytogenes. Experiments of transposition mutagenesis and gene cloning had shown that aureocin A70 production and immunity were associated with the HindIII-A and B fragments of pRJ6. Therefore, a 6332 bp region of the plasmid, encompassing both these fragments, was sequenced using a concatenation DNA sequencing procedure. DNA sequence and genetic analyses revealed the presence of three transcriptional units that appear to be involved in bacteriocin activity. The first transcriptional unit contains a single gene, aurT, which encodes a protein that resembles an ATP-dependent transporter, similar to those involved in lantibiotic export. AurT is required for aureocin A70 production and it appears to be essential for mobilisation of pRJ6. The second putative operon contains two open reading frames (ORFs); the first gene, orfA, is predicted to encode a protein similar to small repressor proteins found in some Archaea, whose function remains to be elucidated. The second gene, orfB, codes for an 138 amino acid residue protein which shares a number of characteristics (high pI and hydrophobicity profile) with proteins associated with immunity, needed for self-protection against bacteriocin. Four other genes are present in the third operon, aurABCD. aurABCD encode four related peptides that are small (30-31 amino acid residues), strongly cationic (pI of 9.85 to 10.04) and highly hydrophobic. Theses peptides also have a high content of small amino acid residues like glycine and alanine, and no cysteine residue. Tn917-lac insertional mutations, which affected aureocin A70 activity, reside within operon aurABCD. Analysis of purified bacteriocin preparations by mass spectrometry demonstrated that all four peptides encoded by aurABCD operon are produced, expressed and excreted without post-translational modifications. Thus, aureocin A70 is a multi-peptide non-lantibiotic bacteriocin, which is transported without processing., (Copyright 2001 Academic Press.)
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- 2001
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86. Interleukin-6 deficiency influences cytokine expression in susceptible BALB mice infected with Leishmania major but does not alter the outcome of disease.
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Titus RG, DeKrey GK, Morris RV, and Soares MB
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- Animals, Disease Susceptibility immunology, Down-Regulation, Interleukin-6 genetics, Leishmaniasis, Cutaneous genetics, Leishmaniasis, Cutaneous physiopathology, Mice, Mice, Inbred BALB C, Mice, Knockout, Th1 Cells immunology, Th2 Cells immunology, Cytokines genetics, Gene Expression Regulation, Interleukin-6 immunology, Leishmania major immunology, Leishmaniasis, Cutaneous immunology
- Abstract
Since interleukin-6 (IL-6) may promote Th2 responses, we infected BALB IL-6-deficient (IL-6(-/-)) mice with Leishmania major. There was not a significant difference between the courses of infection (lesion size and parasite burden) in IL-6(-/-) and wild-type mice, but IL-6(-/-) mice expressed lower levels of Th2- and Th1-associated cytokines.
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- 2001
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87. Modulation of chagasic cardiomyopathy by interleukin-4: dissociation between inflammation and tissue parasitism.
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Soares MB, Silva-Mota KN, Lima RS, Bellintani MC, Pontes-de-Carvalho L, and Ribeiro-dos-Santos R
- Subjects
- Animals, Chagas Cardiomyopathy genetics, Chagas Cardiomyopathy pathology, Immunity, Innate genetics, Immunity, Innate immunology, Inflammation pathology, Interleukin-4 deficiency, Interleukin-4 genetics, Lymphocyte Activation, Mice, Mice, Inbred BALB C, Mice, Knockout, Mice, Nude, Myocarditis genetics, Myocarditis immunology, Myocarditis pathology, Parasitemia pathology, Time Factors, Trypanosoma cruzi, Chagas Cardiomyopathy immunology, Inflammation immunology, Interleukin-4 physiology, Parasitemia immunology, T-Lymphocytes, Helper-Inducer immunology
- Abstract
Chronic chagasic cardiomyopathy (CChC) is characterized by an inflammatory reaction which may eventually lead to heart enlargement, arrythmia, and death. As described herein, interleukin-4-deficient mice mount increased specific T helper (Th) 1 immune responses when infected with Trypanosoma cruzi, as compared to wild-type mice. Interestingly, these mice had reduced parasitism and mortality and exacerbated inflammation in their hearts, demonstrating a clear dissociation between inflammation and parasite load. The modulation of these phenomena so as to maximize host and parasite survivals may depend on a fine balance between Th responses, in which a Th1 response will, on one hand, control parasitism and, on the other hand, enhance heart inflammation throughout the course of the infection.
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- 2001
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88. Isolation and characterization of a cDNA encoding a novel member of the human regenerating protein family: Reg IV.
- Author
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Hartupee JC, Zhang H, Bonaldo MF, Soares MB, and Dieckgraefe BK
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- Amino Acid Sequence, Base Sequence, Calcium-Binding Proteins chemistry, DNA, Complementary chemistry, DNA, Complementary isolation & purification, Expressed Sequence Tags, Humans, Inflammatory Bowel Diseases genetics, Intestinal Mucosa metabolism, Lectins chemistry, Lithostathine, Models, Molecular, Molecular Sequence Data, Pancreatitis-Associated Proteins, RNA, Messenger analysis, Sequence Alignment, Calcium-Binding Proteins genetics, Lectins genetics, Lectins, C-Type, Nerve Tissue Proteins
- Abstract
Human Reg and Reg-related genes constitute a multi-gene family belonging to the calcium (C-type) dependent lectin superfamily. Regenerating gene family members are expressed in the proximal gastrointestinal (GI) tract and ectopically at other sites in the setting of tissue injury. By high-throughput sequence analysis of a large inflammatory bowel disease library, two cDNAs have been isolated which encode a novel member of this multigene family. Based on primary sequence homology, tissue expression profiles, and shared exon-intron junction genomic organization, we assign this gene to the regenerating gene family. Specific protein structural differences suggest that the current three regenerating gene subtypes should be expanded to four. We demonstrate that Reg IV has a highly restricted tissue expression pattern, with prominent expression in the gastrointestinal tract. Reg IV mRNA expression is significantly up-regulated by mucosal injury from active Crohn's disease or ulcerative colitis.
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- 2001
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89. The NIEHS Xenopus maternal EST project: interim analysis of the first 13,879 ESTs from unfertilized eggs.
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Blackshear PJ, Lai WS, Thorn JM, Kennington EA, Staffa NG, Moore DT, Bouffard GG, Beckstrom-Sternberg SM, Touchman JW, Bonaldo MF, and Soares MB
- Subjects
- Alleles, Amino Acid Sequence, Animals, Base Sequence, Cloning, Molecular, DNA, Complementary chemistry, DNA, Complementary genetics, Databases, Factual, Female, Gene Expression Profiling, Gene Expression Regulation, Gene Frequency, Gene Library, Genetic Variation, Molecular Sequence Data, Ovum metabolism, RNA, Messenger genetics, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Sequence Homology, Nucleic Acid, Species Specificity, United States, Environmental Health, Expressed Sequence Tags, National Institutes of Health (U.S.), Xenopus genetics
- Abstract
The sequencing of expressed sequence tags (ESTs) from Xenopus laevis has lagged behind efforts on many other common experimental organisms and man, partly because of the pseudotetraploid nature of the Xenopus genome. Nonetheless, large collections of Xenopus ESTs would be useful in gene discovery, oligonucleotide-based knockout studies, gene chip analyses of normal and perturbed development, mapping studies in the related diploid frog X. tropicalis, and for other reasons. We have created a normalized library of cDNAs from unfertilized Xenopus eggs. These cells contain all of the information necessary for the first several cell divisions in the early embryo, as well as much of the information needed for embryonic pattern formation and cell fate determination. To date, we have successfully sequenced 13,879 ESTs out of 16,607 attempts (83.6% success rate), with an average sequence read length of 508 bp. Using a fragment assembly program, these ESTs were assembled into 8,985 'contigs' comprised of up to 11 ESTs each. When these contigs were used to search publicly available databases, 46.2% bore no relationship to protein or DNA sequences in the database at the significance level of 1e-6. Examination of a sample of 100 of the assembled contigs revealed that most ( approximately 87%) were comprised of two apparent allelic variants. Expression profiles of 16 of the most prominent contigs showed that 12 exhibited some degree of zygotic expression. These findings have implications for sequence-specific applications for Xenopus ESTs, particularly the use of allele-specific oligonucleotides for knockout studies, differential hybridization techniques such as gene chip analysis, and the establishment of accurate nomenclature and databases for this species.
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- 2001
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90. A heart-specific CD4+ T-cell line obtained from a chronic chagasic mouse induces carditis in heart-immunized mice and rejection of normal heart transplants in the absence of Trypanosoma cruzi.
- Author
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Ribeiro-Dos-Santos R, Mengel JO, Postol E, Soares RA, Ferreira-Fernandez E, Soares MB, and Pontes-De-Carvalho LC
- Subjects
- Animals, Cell Line, Chronic Disease, Coculture Techniques, Disease Models, Animal, Graft Rejection, Heart Transplantation, Interferon-gamma analysis, Interleukin-2 analysis, Mice, Mice, Inbred BALB C, Mice, Inbred C57BL, Mice, Inbred DBA, Mice, Nude, Myocarditis immunology, Myocardium cytology, Myocardium immunology, Rabbits, Rats, Spleen immunology, CD4-Positive T-Lymphocytes immunology, Chagas Disease immunology, Trypanosoma cruzi
- Abstract
To study the role of autoreactive T cells in the pathogenesis of cardiomyopathy in Chagas' disease, we generated a cell line by repeated in vitro antigenic stimulation of purified splenic CD4+ T lymphocytes from a chronically Trypanosoma cruzi-infected mouse. Cells from this line were confirmed to be CD4+ CD8- and proliferated upon stimulation with soluble heart antigens from different animal species, as well as with T. cruzi antigen, in the presence of syngeneic feeder cells. In vitro antigen stimulation of the cell line produced a Th1 cytokine profile, with high levels of IFNgamma and IL-2 and absence of IL-4, IL-5 and IL-10. The cell line also terminated the beating of fetal heart clusters in vitro when cocultured with irradiated syngeneic normal spleen cells. In situ injection of the cell line into well established heart transplants also induced the cessation of heart beating. Finally, adoptive transfer of the cell line to heart-immunized or T. cruzi-infected BALB/c nude mice caused intense heart inflammation.
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- 2001
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91. Sexually dimorphic expression of protease nexin-1 and vanin-1 in the developing mouse gonad prior to overt differentiation suggests a role in mammalian sexual development.
- Author
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Grimmond S, Van Hateren N, Siggers P, Arkell R, Larder R, Soares MB, de Fatima Bonaldo M, Smith L, Tymowska-Lalanne Z, Wells C, and Greenfield A
- Subjects
- Amidohydrolases, Amyloid beta-Protein Precursor, Animals, Carrier Proteins genetics, Cell Adhesion Molecules genetics, DNA, Complementary metabolism, Female, GPI-Linked Proteins, Gene Library, In Situ Hybridization, Male, Mice, Mice, Inbred C3H, Oligonucleotide Array Sequence Analysis, Ovary metabolism, Protease Nexins, Receptors, Cell Surface, Reverse Transcriptase Polymerase Chain Reaction, Testis metabolism, Time Factors, Transcription, Genetic, Carrier Proteins biosynthesis, Cell Adhesion Molecules biosynthesis, Gene Expression Regulation, Developmental, Ovary embryology, Sex Differentiation genetics, Testis embryology
- Abstract
The mammalian sex-determining pathway is controlled by the presence or absence of SRY expression in the embryonic gonad. Expression of SRY in males is believed to initiate a pathway of gene expression resulting in testis development. In the absence of SRY, ovary development ensues. Several genes have now been placed in this pathway but our understanding of it is far from complete and several functional classes of protein appear to be absent. Sex-determining genes frequently exhibit sexually dimorphic patterns of expression in the developing gonad both before and after overt differentiation of the testis or ovary. In order to identify additional sex-determining or gonadal differentiation genes we have examined gene expression in the developing gonads of the mouse using cDNA microarrays constructed from a normalized urogenital ridge library. We screened for genes exhibiting sexually dimorphic patterns of expression in the gonad at 12.5 and 13.5 days post-coitum, after overt gonad differentiation, by comparing complex cDNA probes derived from male and female gonadal tissue at these stages on micro-arrays. Using in situ hybridization analysis we show here that two genes identified by this screen, protease nexin-1 (Pn-1) and vanin-1 (Vnn1), exhibit male-specific expression prior to overt gonadal differentiation and are detected in the somatic portion of the developing gonad, suggesting a possible direct link to the testis-determining pathway for both genes.
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- 2000
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92. Anopheles gambiae pilot gene discovery project: identification of mosquito innate immunity genes from expressed sequence tags generated from immune-competent cell lines.
- Author
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Dimopoulos G, Casavant TL, Chang S, Scheetz T, Roberts C, Donohue M, Schultz J, Benes V, Bork P, Ansorge W, Soares MB, and Kafatos FC
- Subjects
- Animals, Base Sequence, Carrier Proteins genetics, Cell Line, Collectins, Immunity genetics, Malaria transmission, Molecular Sequence Data, Monosaccharide Transport Proteins genetics, Multigene Family, Serine Endopeptidases genetics, Anopheles genetics, Anopheles immunology, Calcium-Binding Proteins, Insect Vectors genetics, Malaria immunology, Periplasmic Binding Proteins
- Abstract
Together with AIDS and tuberculosis, malaria is at the top of the list of devastating infectious diseases. However, molecular genetic studies of its major vector, Anopheles gambiae, are still quite limited. We have conducted a pilot gene discovery project to accelerate progress in the molecular analysis of vector biology, with emphasis on the mosquito's antimalarial immune defense. A total of 5,925 expressed sequence tags were determined from normalized cDNA libraries derived from immune-responsive hemocyte-like cell lines. The 3,242 expressed sequence tag-containing cDNA clones were grouped into 2,380 clone clusters, potentially representing unique genes. Of these, 1,118 showed similarities to known genes from other organisms, but only 27 were identical to previously known mosquito genes. We identified 38 candidate genes, based on sequence similarity, that may be implicated in immune reactions including antimalarial defense; 19 of these were shown experimentally to be inducible by bacterial challenge, lending support to their proposed involvement in mosquito immunity.
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- 2000
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93. Molecular profiling of clinical tissues specimens: feasibility and applications.
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Emmert-Buck MR, Strausberg RL, Krizman DB, Bonaldo MF, Bonner RF, Bostwick DG, Brown MR, Buetow KH, Chuaqui RF, Cole KA, Duray PH, Englert CR, Gillespie JW, Greenhut S, Grouse L, Hillier LW, Katz KS, Klausner RD, Kuznetzov V, Lash AE, Lennon G, Linehan WM, Liotta LA, Marra MA, Munson PJ, Ornstein DK, Prabhu VV, Prang C, Schuler GD, Soares MB, Tolstoshev CM, Vocke CD, and Waterston RH
- Subjects
- Databases, Factual, Gene Expression, Gene Expression Profiling statistics & numerical data, Gene Library, Humans, Male, Oligonucleotide Array Sequence Analysis, Pathology, Clinical methods, Polymorphism, Single Nucleotide, Gene Expression Profiling methods, Prostatic Neoplasms genetics
- Published
- 2000
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94. Cloning and characterization of an alpha-neurotoxin-type protein specific for the coral snake Micrurus corallinus.
- Author
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Silveira de Oliveira J, Rossan de Brandão Prieto da Silva A, Soares MB, Stephano MA, de Oliveira Dias W, Raw I, and Ho PL
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- Amino Acid Sequence, Animals, Cloning, Molecular, Conserved Sequence, DNA, Complementary, Elapid Venoms genetics, Elapidae, Gene Library, Molecular Sequence Data, Protein Isoforms chemistry, Protein Isoforms genetics, Recombinant Proteins biosynthesis, Recombinant Proteins chemistry, Sequence Alignment, Sequence Homology, Amino Acid, Elapid Venoms chemistry, Neurotoxins chemistry, Sebaceous Glands metabolism
- Abstract
During the cloning of abundant cDNAs expressed in the Micrurus corallinus coral snake venom gland, we cloned an alpha-neurotoxin homologue cDNA (nxh1). Two others isoforms were also cloned (nxh3 and nxh7, respectively). The nxh1 cDNA codes for a potential coral snake toxin with a signal peptide of 21 amino acids plus a predicted mature peptide with 57 amino acids. The deduced protein is highly similar to known toxic three-finger alpha-neurotoxins, with four deduced S-S bridges at the same conserved positions. This is the first cDNA coding for a three-finger related protein described so far for coral snakes. However, the predicted protein does not possess some of the important amino acids for the nicotinic acetylcholine receptor interaction. This protein was expressed in Escherichia coli as a His-tagged protein that allowed the rapid purification of the recombinant protein. This protein was used to generate antibodies which recognized the recombinant protein in Western blot and also a single band present in the M. corallinus venom, but not in the venom of 10 other Micrurus species., (Copyright 2000 Academic Press.)
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- 2000
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95. Uptake of apoptotic cells drives the growth of a pathogenic trypanosome in macrophages.
- Author
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Freire-de-Lima CG, Nascimento DO, Soares MB, Bozza PT, Castro-Faria-Neto HC, de Mello FG, DosReis GA, and Lopes MF
- Subjects
- Amino Acid Chloromethyl Ketones pharmacology, Animals, Cells, Cultured, Chagas Disease immunology, Chagas Disease parasitology, Cysteine Proteinase Inhibitors pharmacology, Dinoprostone biosynthesis, Dinoprostone physiology, Male, Mice, Mice, Inbred BALB C, Necrosis, Phagocytosis physiology, Putrescine biosynthesis, Putrescine physiology, Receptors, Vitronectin metabolism, T-Lymphocytes drug effects, T-Lymphocytes pathology, Transforming Growth Factor beta physiology, Apoptosis, Macrophages parasitology, T-Lymphocytes physiology, Trypanosoma cruzi growth & development
- Abstract
After apoptosis, phagocytes prevent inflammation and tissue damage by the uptake and removal of dead cells. In addition, apoptotic cells evoke an anti-inflammatory response through macrophages. We have previously shown that there is intense lymphocyte apoptosis in an experimental model of Chagas' disease, a debilitating cardiac illness caused by the protozoan Trypanosoma cruzi. Here we show that the interaction of apoptotic, but not necrotic T lymphocytes with macrophages infected with T. cruzi fuels parasite growth in a manner dependent on prostaglandins, transforming growth factor-beta (TGF-beta) and polyamine biosynthesis. We show that the vitronectin receptor is critical, in both apoptotic-cell cytoadherence and the induction of prostaglandin E2/TGF-beta release and ornithine decarboxylase activity in macrophages. A single injection of apoptotic cells in infected mice increases parasitaemia, whereas treatment with cyclooxygenase inhibitors almost completely ablates it in vivo. These results suggest that continual lymphocyte apoptosis and phagocytosis of apoptotic cells by macrophages have a role in parasite persistence in the host, and that cyclooxygenase inhibitors have potential therapeutic application in the control of parasite replication and spread in Chagas' disease.
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- 2000
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96. Molecular pathogenesis of B-cell chronic lymphocytic leukemia: analysis of 13q14 chromosomal deletions.
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Migliazza A, Cayanis E, Bosch-Albareda F, Komatsu H, Martinotti S, Toniato E, Kalachikov S, Bonaldo MF, Jelene P, Ye X, Rzhetsky A, Qu X, Chien M, Inghirami G, Gaidano G, Vitolo U, Saglio G, Resegotti L, Zhang P, Soares MB, Russo J, Fischer SG, Edelman IS, Efstratiadis A, and Dalla-Favera R
- Subjects
- Alleles, Antigens, Neoplasm analysis, CD5 Antigens analysis, Cell Line, Transformed, Chromosome Mapping, Chromosomes, Human, Pair 13 genetics, Gene Expression Profiling, Gene Expression Regulation, Neoplastic, Humans, Leukemia, Lymphocytic, Chronic, B-Cell pathology, Mutation, Neoplasm Proteins genetics, Proto-Oncogenes, Chromosome Deletion, Chromosomes, Human, Pair 13 ultrastructure, Genes, Tumor Suppressor, Leukemia, Lymphocytic, Chronic, B-Cell genetics
- Published
- 2000
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97. The neuronal ceroid lipofuscinoses in human EPMR and mnd mutant mice are associated with mutations in CLN8.
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Ranta S, Zhang Y, Ross B, Lonka L, Takkunen E, Messer A, Sharp J, Wheeler R, Kusumi K, Mole S, Liu W, Soares MB, Bonaldo MF, Hirvasniemi A, de la Chapelle A, Gilliam TC, and Lehesjoki AE
- Subjects
- Amino Acid Sequence, Amino Acid Substitution, Animals, Base Sequence, Blotting, Northern, Chromosome Mapping, DNA Mutational Analysis, Epilepsy complications, Exons, Family Health, Female, Genes genetics, Humans, Intellectual Disability complications, Introns, Mice, Mice, Mutant Strains, Molecular Sequence Data, Mutagenesis, Insertional, Mutation, Neuronal Ceroid-Lipofuscinoses complications, Pedigree, Point Mutation, RNA, Messenger genetics, RNA, Messenger metabolism, Sequence Alignment, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Tissue Distribution, Epilepsy genetics, Intellectual Disability genetics, Membrane Proteins genetics, Neuronal Ceroid-Lipofuscinoses genetics
- Abstract
The neuronal ceroid lipofuscinoses (NCLs) are a genetically heterogeneous group of progressive neurodegenerative disorders characterized by the accumulation of autofluorescent lipopigment in various tissues. Progressive epilepsy with mental retardation (EPMR, MIM 600143) was recently recognized as a new NCL subtype (CLN8). It is an autosomal recessive disorder characterized by onset of generalized seizures between 5 and 10 years, and subsequent progressive mental retardation. Here we report the positional cloning of a novel gene, CLN8, which is mutated in EPMR. It encodes a putative transmembrane protein. EPMR patients were homozygous for a missense mutation (70C-->G, R24G) that was not found in homozygosity in 433 controls. We also cloned the mouse Cln8 sequence. It displays 82% nucleotide identity with CLN8, conservation of the codon harbouring the human mutation and is localized to the same region as the motor neuron degeneration mouse, mnd, a naturally occurring mouse NCL (ref. 4). In mnd/mnd mice, we identified a homozygous 1-bp insertion (267-268insC, codon 90) predicting a frameshift and a truncated protein. Our data demonstrate that mutations in these orthologous genes underlie NCL phenotypes in human and mouse, and represent the first description of the molecular basis of a naturally occurring animal model for NCL.
- Published
- 1999
- Full Text
- View/download PDF
98. Construction of a normalized cDNA library for the Trypanosoma cruzi genome project.
- Author
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Urményi TP, Bonaldo MF, Soares MB, and Rondinelli E
- Subjects
- Animals, Blotting, Southern, DNA, Complementary genetics, Expressed Sequence Tags, Sequence Analysis, DNA, Trypanosoma cruzi growth & development, Gene Library, Genome, Protozoan, Trypanosoma cruzi genetics
- Abstract
Sequencing of the Trypanosoma cruzi genome is underway. Expressed sequence tags, obtained from cDNA libraries, facilitate mapping and gene discovery. The efficiency of large-scale generation of such tags is increased when using normalized cDNA libraries, where the frequency of individual clones is brought within a narrow range. Repetitive sequencing of abundant clones is therefore minimized. We constructed a normalized cDNA library from epimastigotes of clone CL Brener, and the efficiency of normalization of representative clones was assessed and shown to be adequate. The normalized cDNA library has been distributed to several groups and large-scale sequencing is currently in progress.
- Published
- 1999
- Full Text
- View/download PDF
99. Immunopathology of cardiomyopathy in the experimental Chagas disease.
- Author
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Soares MB and Santos RR
- Subjects
- Animals, CD4-Positive T-Lymphocytes immunology, CD8-Positive T-Lymphocytes immunology, Cell Line, Chagas Cardiomyopathy pathology, Mice, Mice, Inbred BALB C, Mice, Nude, Myocardium immunology, Myocardium pathology, Neurons immunology, Neurons pathology, Autoimmunity immunology, Chagas Cardiomyopathy immunology, Trypanosoma cruzi immunology
- Abstract
The mechanisms by which Trypanosoma cruzi causes cardiomyopathy and induces neuronal destruction are discussed in this paper. The results suggest that autoimmunity in the chronic phase is the main cause of the progressive cardiac destruction, and that autoreactivity is restricted to the CD4+ T cell compartment. During the acute phase, the neuronal and cardiac fiber destruction occurs when ruptured parasite nests release T. cruzi antigens that bind to the cell surface in the vicinity which become targets for the cellular and humoral immune response against T. cruzi. The various factors involved in the genesis of autoimmunity in chronic T. cruzi infection include molecular mimicry, presentation of self-antigens and imbalance of immune regulation.
- Published
- 1999
- Full Text
- View/download PDF
100. The PACAP-type I receptor agonist maxadilan from sand fly saliva protects mice against lethal endotoxemia by a mechanism partially dependent on IL-10.
- Author
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Bozza M, Soares MB, Bozza PT, Satoskar AR, Diacovo TG, Brombacher F, Titus RG, Shoemaker CB, and David JR
- Subjects
- Animals, Endotoxemia chemically induced, Galactosamine pharmacology, Interleukin-10 blood, Interleukin-10 genetics, Interleukin-6 blood, Lipopolysaccharides pharmacology, Male, Mice, Mice, Inbred BALB C, Mice, Inbred C57BL, Neuropeptides pharmacology, Pituitary Adenylate Cyclase-Activating Polypeptide, Platelet Activation drug effects, Psychodidae chemistry, Receptors, Pituitary Adenylate Cyclase-Activating Polypeptide, Receptors, Pituitary Adenylate Cyclase-Activating Polypeptide, Type I, Tumor Necrosis Factor-alpha metabolism, Endotoxemia prevention & control, Insect Proteins pharmacology, Interleukin-10 immunology, Receptors, Pituitary Hormone agonists, Salivary Proteins and Peptides pharmacology
- Abstract
Sand fly saliva contains maxadilan, a peptide that causes vasodilation and modifies the secretion of pro-inflammatory cytokines by macrophages. We show that 1 to 10 microg maxadilan protected BALB/c mice against a lethal dose of LPS. Maxadilan reduced serum levels of TNF-alpha by approximately tenfold, while it caused a threefold increase in IL-6 and IL-10. The protective effect of maxadilan is partially dependent on its ability to induce IL-10 production since maxadilan did not prevent death from endotoxic shock in IL-10(-/-) mice. Finally, maxadilan is a selective agonist of the pituitary adenylate cyclase-activating peptide (PACAP) type I receptor, and we found that the natural ligand of this receptor (PACAP 38) also protected mice against lethal endotoxemia. These results indicate that activation of the PACAP type I receptor may contribute to the control of systemic inflammation by a mechanism that is partially dependent on IL-10.
- Published
- 1998
- Full Text
- View/download PDF
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