72 results on '"Thomas D. Sullivan"'
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52. Gracia on the Ontological Status of Categories
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Russell Pannier and Thomas D. Sullivan
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- 2006
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53. The Bounds of Metaphysics
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Thomas D. Sullivan and Russell Pannier
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- 2006
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54. Using new genetic tools to study the pathogenesis of Blastomyces dermatitidis
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Bruce S. Klein, Peggy J. Rooney, T. Tristan Brandhorst, and Thomas D. Sullivan
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Microbiology (medical) ,Genetics ,Genetic Markers ,education.field_of_study ,biology ,Virulence ,Blastomyces dermatitidis ,Population ,Gene targeting ,Membrane Proteins ,Fungal pathogen ,biology.organism_classification ,Microbiology ,Blastomycosis ,Pathogenesis ,Infectious Diseases ,Virology ,Gene Expression Regulation, Fungal ,Gene Targeting ,Blastomyces ,Adaptor Protein Complex beta Subunits ,education ,Dimorphic fungus - Abstract
Fungal pathogens have emerged as a public health menace owing to the expanding population of vulnerable patients and a heightened exposure to fungi in our environment, particularly for the systemic dimorphic fungi that inhabit soil worldwide. A better understanding of these invaders and their pathogenic mechanisms is badly needed to further research into therapeutic options. Advances in the molecular tools available for genetic manipulation of Blastomyces dermatitidis have enhanced our ability to study this poorly understood dimorphic fungal pathogen. Recent refinements in gene-transfer techniques, new selection markers, reliable reporter fusions and successes in gene targeting have shed light upon the importance of the mycelium-to-yeast transition and the crucial and complex role the BAD1 adhesin plays in pathogenesis.
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- 2002
55. The maize brittle 1 gene encodes amyloplast membrane polypeptides
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Thomas D. Sullivan and Yasuko Kaneko
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Differential centrifugation ,Amyloplast membrane ,Recombinant Fusion Proteins ,fungi ,food and beverages ,Gene Expression ,Membrane Proteins ,Plant Science ,Biology ,Cell Fractionation ,Fusion protein ,Zea mays ,Antibodies ,Endosperm ,Microscopy, Electron ,Biochemistry ,Membrane protein ,Antibody Specificity ,Genetics ,Escherichia coli ,Amyloplast ,Plastid ,Cell fractionation ,Plant Proteins - Abstract
A chimeric protein, formed of 56 amino acids from the carboxy terminus of the maize (Zea mays L.) wild-type Brittle1 (Bt1) protein fused to the glutathione-S-transferase gene, was synthesized in Escherichia coli, and used to raise antibodies. Following affinity purification, the antibodies recognized a set of 38- to 42-kDa proteins in endosperm from wild-type Bt1 plants, as well as from brittle2, shrunken2 and sugary1 plants, but not in mutant bt1 endosperm. Bt1 proteins were not detected with the preimmune antibodies. A low level of Bt1-specific proteins was detected at 10 d after pollination (DAP) and increased to a plateau at 16 DAP. At the same time, the ratio of slow- to fast-migrating forms of the protein decreased. During endosperm fractionation by differential centrifugation and membrane sedimentation in sucrose gradients, the Bt1 proteins co-purified with the carotenoid-containing plastid membranes. They were localized to amyloplasts by electron-microscopic immunocytochemistry; most of the signal was detected at the plastid periphery. These results are consistent with predictions made from the deduced amino-acid sequence and previous in-vitro experiments that the bt1 locus encodes amyloplast membrane proteins.
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- 1995
56. SREB, a GATA Transcription Factor That Directs Disparate Fates in Blastomyces dermatitidis Including Morphogenesis and Siderophore Biosynthesis
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Thomas D. Sullivan, Sergio S. Gallardo, T. Tristan Brandhorst, Christina A. Cuomo, Garret Suen, Bruce S. Klein, Cameron R. Currie, Amber Vanden Wymelenberg, and Gregory M. Gauthier
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lcsh:Immunologic diseases. Allergy ,Genes, Fungal ,Molecular Sequence Data ,Immunology ,Mutant ,Morphogenesis ,Gene Expression ,Siderophores ,Biology ,GATA Transcription Factors ,Microbiology ,03 medical and health sciences ,Infectious Diseases/Fungal Infections ,Gene Expression Regulation, Fungal ,Yeasts ,Virology ,SREB ,Genetics ,Amino Acid Sequence ,lcsh:QH301-705.5 ,Molecular Biology ,Transcription factor ,030304 developmental biology ,Regulation of gene expression ,0303 health sciences ,Base Sequence ,Reverse Transcriptase Polymerase Chain Reaction ,030306 microbiology ,Fungi ,Temperature ,Fungal genetics ,Microbiology/Medical Microbiology ,Blotting, Northern ,Blotting, Southern ,lcsh:Biology (General) ,Blastomyces ,GATA transcription factor ,Parasitology ,lcsh:RC581-607 ,Dimorphic fungus ,Research Article - Abstract
Blastomyces dermatitidis belongs to a group of human pathogenic fungi that exhibit thermal dimorphism. At 22°C, these fungi grow as mold that produce conidia or infectious particles, whereas at 37°C they convert to budding yeast. The ability to switch between these forms is essential for virulence in mammals and may enable these organisms to survive in the soil. To identify genes that regulate this phase transition, we used Agrobacterium tumefaciens to mutagenize B. dermatitidis conidia and screened transformants for defects in morphogenesis. We found that the GATA transcription factor SREB governs multiple fates in B. dermatitidis: phase transition from yeast to mold, cell growth at 22°C, and biosynthesis of siderophores under iron-replete conditions. Insertional and null mutants fail to convert to mold, do not accumulate significant biomass at 22°C, and are unable to suppress siderophore biosynthesis under iron-replete conditions. The defect in morphogenesis in the SREB mutant was independent of exogenous iron concentration, suggesting that SREB promotes the phase transition by altering the expression of genes that are unrelated to siderophore biosynthesis. Using bioinformatic and gene expression analyses, we identified candidate genes with upstream GATA sites whose expression is altered in the null mutant that may be direct or indirect targets of SREB and promote the phase transition. We conclude that SREB functions as a transcription factor that promotes morphogenesis and regulates siderophore biosynthesis. To our knowledge, this is the first gene identified that promotes the conversion from yeast to mold in the dimorphic fungi, and may shed light on environmental persistence of these pathogens., Author Summary The dimorphic fungi are the most common cause of invasive fungal disease worldwide. In the soil, these fungi grow as mold that produce infectious spores; when inhaled into the warmer lungs of a mammalian host, the spores convert into yeast, which cause infection. The change in shape between mold and yeast is a crucial event in the lifecycle of these fungi. The molecular regulation of this morphologic switch, or phase transition, is poorly understood. The goal of our research was to identify and characterize novel gene(s) that govern the phase transition in dimorphic fungi using Blastomyces dermatitidis as a model organism. Using insertional mutagenesis, we identified a gene, SREB, which encodes a transcription factor that affects phase transition and regulates the production of iron-gathering molecules or siderophores. When SREB is deleted, B. dermatitidis fails to complete the conversion from yeast to mold, grows poorly at environmental temperature, has yellow-orange colony pigmentation, and cannot properly repress the biosynthesis of siderophores. We also identified two types of siderophores produced by B. dermatitidis. To our knowledge, SREB is the first gene identified that promotes the conversion from yeast to mold, a process important for survival in the environment and generation of infectious spores.
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- 2010
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57. Alternative 3' splice acceptor sites modulate enzymic activity in derivative alleles of the maize bronze1-mutable 13 allele
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Oliver E. Nelson, Thomas D. Sullivan, Ron J. Okagaki, and John W. Schiefelbein
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Genetics ,Base Composition ,Splice site mutation ,Base Sequence ,Transcription, Genetic ,Molecular Sequence Data ,Exonic splicing enhancer ,Intron ,Cell Biology ,Plant Science ,Exons ,Biology ,Null allele ,Zea mays ,Introns ,Exon ,Alternative Splicing ,Suppression, Genetic ,Glucosyltransferases ,RNA splicing ,splice ,RNA, Messenger ,Gene ,Alleles ,Research Article - Abstract
The defective Suppressor-mutator (dSpm)-induced allele bronze1-mutable 13 (bz1-m13) and many of its derivative alleles are leaky mutants with measurable levels of flavonol O3-glucosyltransferase activity. This activity results from splicing at acceptor site-1, one of two cryptic 39 splice sites within the dSpm insertion in bz1-m13. In this study, splicing in bz1-m13 change-in-state (CS) alleles CS-3 and CS-64 was shown to be altered from bz1-m13; previous work found altered splicing in CS-9. CS-64 is a null allele and lacks the acceptor site-1-spliced transcript because this site is deleted. CS-3 and CS-9 had increased levels of the acceptor site-1 transcript relative to bz1-m13 and increased enzymic activities. A deletion in CS-9 altered splicing by eliminating acceptor site-2. Both acceptor sites were intact in CS-3, but a deletion removed most of a 275-bp GC-rich sequence in dSpm. This suggests that GC-rich sequences affect splicing and is consistent with models postulating a role for AU content in the splicing of plant introns. Splicing does not necessarily occur, however, at the junction of AU-rich intron sequences and GC-rich exon sequences.
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- 1992
58. Analysis of Maize Brittle-1 Alleles and a Defective Suppressor-Mutator-Induced Mutable Allele
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Ronald L. Phillips, Lisa I. Strelow, Thomas D. Sullivan, Oliver E. Nelson, and Charles A. Illingworth
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Transposable element ,Amyloplast membrane ,Molecular Sequence Data ,Locus (genetics) ,Plant Science ,Biology ,Zea mays ,Exon ,Suppression, Genetic ,Complementary DNA ,Amino Acid Sequence ,Allele ,Cloning, Molecular ,Peptide sequence ,Alleles ,Plant Proteins ,Genetics ,Base Sequence ,Sequence Homology, Amino Acid ,fungi ,Membrane Proteins ,DNA ,Cell Biology ,Molecular biology ,Restriction enzyme ,Phenotype ,DNA Transposable Elements ,Research Article - Abstract
A mutant allele of the maize brittle-1 (bt1) locus, brittle-1-mutable (bt1-m), was shown genetically and molecularly to result from the insertion of a defective Suppressor-mutator (dSpm) transposable element. An Spm-hybridizing restriction enzyme fragment, which cosegregates with the bt1-m allele and is absent from wild-type revertants of bt1-m, was identified and cloned. Non-Spm portions of it were used as probes to identify wild-type (Bt1) cDNAs in an endosperm library. The 4.3-kb bt1-m genomic clone contains a 3.3-kb dSpm, which is inserted in an exon and is composed of Spm termini flanking non-Spm sequences. RNA gel blot analyses, using a cloned Bt1 cDNA probe, indicated that Bt1 mRNA is present in the endosperm of developing kernels and is absent from embryo or leaf tissues. Several transcripts are produced by bt1-m. The deduced translation product from a 1.7-kb Bt1 cDNA clone has an apparent plastid transit peptide at its amino terminus and sequence similarity to several mitochondrial inner-envelope translocator proteins, suggesting a possible role in amyloplast membrane transport.
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- 1991
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59. Benevolence and Absolute Prohibitions
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Gary Atkinson and Thomas D. Sullivan
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Philosophy ,Philosophy of sport ,Contemporary philosophy ,Christian philosophy ,Absolute (philosophy) ,Environmental ethics ,Western philosophy ,Social science ,Modern philosophy ,Philosophy education ,Eastern philosophy - Published
- 1985
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60. Half-lives of beta and gamma globin messenger RNAs and of protein synthetic capacity in cultured human reticulocytes
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Jeffrey Ross and Thomas D. Sullivan
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Messenger RNA ,Immunology ,RNA ,Translation (biology) ,Gamma globulin ,Cell Biology ,Hematology ,Biology ,Biochemistry ,Molecular biology ,hemic and lymphatic diseases ,Protein biosynthesis ,Beta protein ,Globin ,Beta (finance) - Abstract
The turnover rates of beta and gamma globin messenger RNAs and of beta and gamma globin protein synthesis in human reticulocytes have been measured. Our goal was to determine whether beta globin mRNA is significantly more stable than gamma globin mRNA during the final stages of erythroid cell maturation. Such a result could explain the reported increase in the beta-gamma protein synthetic ratio during erythroid maturation. As determined by molecular hybridization and cell- free translation assays, the half-lives of both mRNAs are 20 to 29 hours in adult and neonatal reticulocytes. Protein synthetic capacity in intact cells decays with a half-life of six to eight hours, but beta protein synthesis declines at the same rate as gamma. Therefore, the changing ratio of fetal to adult hemoglobin synthesis during late erythroid maturation does not result from differences in mRNA turnover rates or changes in translation efficiencies. These data, coupled with those obtained with immature erythroid cells (Farquhar et al, Dev Biol 85: 403, 1981), suggest that, during erythroid maturation, the gamma- beta globin protein synthesis ratio declines because gamma gene transcription ceases earlier than beta gene transcription. Our results also indicate that the protein synthetic machinery, not the quantity of mRNA, becomes rate-limiting for globin production in cultured reticulocytes.
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- 1985
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61. Between Thoughts and Things
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Thomas D. Sullivan
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- 1976
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62. Isolation and characterization of a maize chlorophyll a/b binding protein gene that produces high levels of mRNA in the dark
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Alan H. Christensen, Peter H. Quail, and Thomas D. Sullivan
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Chlorophyll ,TATA box ,Molecular Sequence Data ,Photosynthetic Reaction Center Complex Proteins ,Restriction Mapping ,Light-Harvesting Protein Complexes ,Biology ,Zea mays ,Homology (biology) ,Complementary DNA ,Genetics ,Genomic library ,Amino Acid Sequence ,RNA, Messenger ,Northern blot ,Molecular Biology ,Gene ,Plant Proteins ,Southern blot ,Base Sequence ,fungi ,Nucleic acid sequence ,food and beverages ,Darkness ,Molecular biology ,Gene Expression Regulation ,Genes - Abstract
A cDNA library prepared using mRNA isolated from red-light irradiated maize seedlings was screened by a difference procedure for clones that represent red-light regulated mRNA. Two such clones were found to represent mRNA for a chlorophyll a/b binding protein (CAB), and one of these (pAB1084) was used to screen a maize genomic library. One positive genomic clone (lambda AB1084) was isolated and sequenced. The gene represented by lambda AB1084, which we designate maize cab-1, contains extensive nucleotide homology within its protein coding region to CAB genes from other species. The boundaries of the transcribed region of the cab-1 gene were determined by S1 nuclease mapping. The 5' terminus of cab-1 mRNA is located 52-54 nucleotides (nt) upstream of the translation start site and 34 nt downstream of a TATA box. As in the case of petunia CAB genes, several poly(A) addition sites are present in mRNA from the cab-1 gene. The 5' flanking DNA of cab-1 contains sequences related to elements that have been implicated in the light-regulated expression of CAB and rbcS genes in other plant systems. Quantitative Northern blot hybridization analysis using a gene specific probe for cab-1 indicates that the mRNA for this gene is present at 0.4% of the total mRNA and up to 80% of the total CAB mRNA in the leaves of dark-grown seedlings. In consequence, although the degree of up-regulation by white light is only moderate (3- to 6-fold), cab-1 transcripts account for approximately 2% of the mRNA in the leaves of light-grown seedlings.
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- 1989
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63. Tissue-Specific effects of maizebronze gene promoter mutations induced byDs1 insertion and excision
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Thomas D. Sullivan, Oliver E. Nelson, and John W. Schiefelbein
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Transposable element ,Molecular Sequence Data ,Gene Expression ,Biology ,Polymerase Chain Reaction ,Zea mays ,Aleurone ,Gene expression ,Genetics ,Coding region ,RNA, Messenger ,Insertion ,Promoter Regions, Genetic ,Gene ,Alleles ,Base Sequence ,Single-Strand Specific DNA and RNA Endonucleases ,Nucleic acid sequence ,Promoter ,DNA ,Cell Biology ,Molecular biology ,Glucosyltransferases ,Mutation ,DNA Transposable Elements ,Pollen ,RNA ,Developmental Biology - Abstract
Bz-wm is an allele of the Bz locus of maize isolated by McClintock (1962) as a derivative of bz-m2. It contains a Ds1 insertion 63 bp upstream of the start of transcription and a 3 bp insertion in the coding region at the site of the Ac element that was present in bz-m2. Bz-wm produces, in the aleurone layer of the endosperm, low amounts (approximately 1% of wild-type) of a Bz-gene encoded UDP-glucose: flavoid 3-0-glucosyltransferase (UFGT) polypeptide with altered thermal stability. Three phenotypically wild-type derivatives, Bz' (wm)-1, Bz' (wm)-2 and Bz' (wm)-3, were isolated in the presence of Ac and shown to have excised the Ds1 element but not fully restored UFGT activity in endosperm assays. In the studies reported here, we have further analyzed these Bz' derivatives of Bz-wm by determining the DNA sequences left behind on Ds1 excision, and by measuring the amount of UFGT activity and/or Bz mRNA conditioned by Bz-wm and the Bz' derivatives in different tissues. The data indicate that tissue-specific differences in expression of the Bz gene have been produced in alleles with mutations caused by transposable elements Ac and Ds. These mutations may affect either the amount of Bz transcription or the stability of the UFGT polypeptide. The sequence or spacing in the -63 region of the Bz promoter appears to be critical for maximum expression in aleurone and husk but not in pollen and pigmented seedling tissue.
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- 1989
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64. The diffusiveness of intention principle: A counter-example
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Joseph M. Boyle and Thomas D. Sullivan
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Philosophy of language ,Philosophy of mind ,Philosophy ,Metaphysics ,Counterexample ,Epistemology - Published
- 1977
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65. Berkeley’s Moral Philosophy
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Thomas D. Sullivan
- Subjects
Moral philosophy ,American philosophy ,Philosophy ,Moral psychology ,Theology ,Epistemology - Published
- 1970
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66. Fungi Subvert Vaccine T Cell Priming at the Respiratory Mucosa by Preventing Chemokine-Induced Influx of Inflammatory Monocytes
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Bruce S. Klein, Marcel Wüthrich, Kevin Galles, Karen Ersland, and Thomas D. Sullivan
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CD4-Positive T-Lymphocytes ,CCR2 ,Chemokine ,T cell ,Immunology ,Priming (immunology) ,Bone Marrow Cells ,Mice, Transgenic ,Respiratory Mucosa ,Biology ,Matrix Metalloproteinase Inhibitors ,Lymphocyte Activation ,Monocytes ,Article ,Cell Line ,Mice ,Immunity ,Cell Movement ,medicine ,Animals ,Antigens, Ly ,Immunology and Allergy ,Chemokine CCL7 ,Fungal vaccine ,Inflammation ,Attenuated vaccine ,Vaccination ,Cell Differentiation ,medicine.anatomical_structure ,Infectious Diseases ,biology.protein ,Blastomyces ,Matrix Metalloproteinase 2 ,Fungal Vaccines - Abstract
Summary Vaccinologists strive to harness immunity at mucosal sites of pathogen entry. We studied respiratory delivery of an attenuated vaccine against Blastomyces dermatitidis . We created a T cell receptor transgenic mouse responsive to vaccine yeast and found that mucosal vaccination led to poor T cell activation in the draining nodes and differentiation in the lung. Mucosal vaccination subverted lung T cell priming by inducing matrix metalloproteinase 2 (MMP2), which impaired the action of the chemokine CCL7 on egress of CCR2 + Ly6C hi inflammatory monocytes from the bone marrow and their recruitment to the lung. Studies in Mmp2 −/− mice, or treatment with MMP inhibitor or rCCL7, restored recruitment of Ly6C hi monocytes to the lung and CD4 + T cell priming. Mucosal vaccination against fungi and perhaps other respiratory pathogens may require manipulation of host MMPs in order to alter chemokine signals needed to recruit Ly6C hi monocytes and prime T cells at the respiratory mucosa.
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67. A debate on abortion
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William, Hasker and Thomas D, Sullivan
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Life Support Care ,Moral Obligations ,Personhood ,Embryonic and Fetal Development ,Social Responsibility ,Value of Life ,Fetus ,Life ,Individuality ,Humans ,Abortion, Induced ,Fetal Viability ,Beginning of Human Life - Published
- 1979
68. The right to life and self-consciousness
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Thomas D, Sullivan
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Freedom ,Value of Life ,Human Rights ,Individuality ,Abortion, Induced ,Self Concept ,Personhood ,Fetus ,Life ,Pregnancy ,Personal Autonomy ,Humans ,Pregnant Women ,Beginning of Human Life - Published
- 1978
69. THE USE OF TRAVEL IN A VA HOSPITAL'S REHABILITATION PROGRAM
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Michael J. Schaefer, Myron F. Thomas, and Thomas D. Sullivan
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Male ,Travel ,medicine.medical_specialty ,Rehabilitation ,Hospitals, Veterans ,business.industry ,Mental Disorders ,Minnesota ,medicine.medical_treatment ,Middle Aged ,Psychiatry and Mental health ,Physical therapy ,medicine ,Humans ,business - Published
- 1977
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70. Spinal Cord Involvement in Acute Bacterial Meningitis
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Glen G. Glista, Joel Brumlik, and Thomas D. Sullivan
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business.industry ,Anesthesia ,Spinal cord involvement ,Respiratory arrest ,Medicine ,Bacterial meningitis ,General Medicine ,medicine.symptom ,business ,Sensory level ,Acute bacterial meningitis - Abstract
A 25-month-old boy had the development of respiratory arrest and quadriplegia with a T-10 sensory level during the acute phase ofHaemophilus influenzaemeningitis. The sequelae of spinal cord involvement of bacterial meningitis are reviewed. A possible mechanism of the spinal cord involvement in this case is discussed with reference to known pathology ofH influenzaemeningitis. (JAMA243:1362-1363, 1980)
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- 1980
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71. Somatic Chromosomes of Pedigreed Hybrid Petunia
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Thomas D Sullivan
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Genetics ,Somatic cell ,Plant Science ,Biology ,Hybrid petunia - Published
- 1947
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72. The elicitin-like glycoprotein, ELI025, is secreted by the pathogenic oomycete Pythium insidiosum and evades host antibody responses.
- Author
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Tassanee Lerksuthirat, Tassanee Lohnoo, Ruchuros Inkomlue, Thidarat Rujirawat, Wanta Yingyong, Rommanee Khositnithikul, Narumon Phaonakrop, Sittiruk Roytrakul, Thomas D Sullivan, and Theerapong Krajaejun
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Medicine ,Science - Abstract
Pythium insidiosum is a unique oomycete that can infect humans and animals. Patients with a P. insidiosum infection (pythiosis) have high rates of morbidity and mortality. The pathogen resists conventional antifungal drugs. Information on the biology and pathogenesis of P. insidiosum is limited. Many pathogens secrete proteins, known as effectors, which can affect the host response and promote the infection process. Elicitins are secretory proteins and are found only in the oomycetes, primarily in Phytophthora and Pythium species. In plant-pathogenic oomycetes, elicitins function as pathogen-associated molecular pattern molecules, sterol carriers, and plant defense stimulators. Recently, we reported a number of elicitin-encoding genes from the P. insidiosum transcriptome. The function of elicitins during human infections is unknown. One of the P. insidiosum elicitin-encoding genes, ELI025, is highly expressed and up-regulated at body temperature. This study aims to characterize the biochemical, immunological, and genetic properties of the elicitin protein, ELI025. A 12.4-kDa recombinant ELI025 protein (rELI025) was expressed in Escherichia coli. Rabbit anti-rELI025 antibodies reacted strongly with the native ELI025 in P. insidiosum's culture medium. The detected ELI025 had two isoforms: glycosylated and non-glycosylated. ELI025 was not immunoreactive with sera from pythiosis patients. The region near the transcriptional start site of ELI025 contained conserved oomycete core promoter elements. In conclusion, ELI025 is a small, abundant, secreted glycoprotein that evades host antibody responses. ELI025 is a promising candidate for development of diagnostic and therapeutic targets for pythiosis.
- Published
- 2015
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