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The competition among different phases in perovskite manganites is pronounced since their energies are very close under the interplay of charge, spin, orbital and lattice degrees of freedom. To reveal the roles of underlying interactions, many efforts have been devoted towards directly imaging phase transitions at microscopic scales. Here we show images of the charge-ordered insulator (COI) phase transition from a pure ferromagnetic metal with reducing field or increasing temperature in a strained phase-separated manganite film, using a home-built magnetic force microscope. Compared with the COI melting transition, this reverse transition is sharp, cooperative and martensitic-like with astonishingly unique yet diverse morphologies. The COI domains show variable-dimensional growth at different temperatures and their distribution can illustrate the delicate balance of the underlying interactions in manganites. Our findings also display how phase domain engineering is possible and how the phase competition can be tuned in a controllable manner., Comment: Published version

Genetic differences between individuals associated to quantitative phenotypic traits, including disease states, are usually found in non-coding genomic regions. These genetic variants are often also associated to differences in expression levels of nearby genes (they are "expression quantitative trait loci" or eQTLs for short) and presumably play a gene regulatory role, affecting the status of molecular networks of interacting genes, proteins and metabolites. Computational systems biology approaches to reconstruct causal gene networks from large-scale omics data have therefore become essential to understand the structure of networks controlled by eQTLs together with other regulatory genes, and to generate detailed hypotheses about the molecular mechanisms that lead from genotype to phenotype. Here we review the main analytical methods and softwares to identify eQTLs and their associated genes, to reconstruct co-expression networks and modules, to reconstruct causal Bayesian gene and module networks, and to validate predicted networks in silico., Comment: minor revision with typos corrected; review article; 24 pages, 2 figures

The electric-field-modulated resistance switching in VO2 thin films grown on piezoelectric (111)-0.68Pb(Mg1/3Nb2/3)O3-0.32PbTiO3 (PMN-PT) substrates has been investigated. Large relative change in resistance (10.7%) was observed in VO2/PMN-PT(111) hererostructures at room temperature. For a substrate with a given polarization direction, stable resistive states of VO2 films can be realized even when the applied electric fields are removed from the heterostructures. By sweeping electric fields across the heterostructure appropriately, multiple resistive states can be achieved. These stable resistive states result from the different stable remnant strain states of substrate, which is related to the rearrangements of ferroelectric domain structures in PMN-PT(111) substrate. The resistance switching tuned by electric field in our work may have potential applications for novel electronic devices., Comment: 20 pages, 5 figures

By decomposing the CMB temperature fluctuations \emph{squared} into spherical harmonics, we can define the \emph{CMB power multipoles} as the fundamental observables to quantify any generic modulations in the CMB. This allows for simple direct measurements for the CMB modulations, and also indirect measurements for the CMB trispectrum, which fully determines the CMB modulations in a statistically isotropic universe. The CMB power multipoles can reach the theoretical accuracies higher than the current constraints from Planck observations. The theoretical accuracy for the dipole modulation, $A\sim0.0015$, receives $\sim 10$ times improvement; higher $l$ modulations have even higher accuracies. This calls for practical observational studies of its possible improvements on the CMB modulation and non-Gaussianity constraints., Comment: 15 pages, 4 figures

Systematic transport measurements have been performed on a series of La0.67Ca0.33MnO3 (LCMO) thin films with varying degrees of anisotropic strain. The strain is induced via epitaxial growth on NdGaO3(001) substrates and varied by controlling the thermal annealing time. An antiferromagnetic insulating (AFI) state, possibly associated with charge ordering, emerges upon thermal annealing. The Hall effect in these materials exhibits features that are indicative of a percolative phase transition and correlate closely with the emergence of the AFI state. In the paramagnetic phase, the Hall resistivity takes on two slopes in all samples: a decreasing negative slope with increasing temperature at low fields, which is attributed to the carrier hopping motion, and an almost temperature independent positive slope at high fields due to diffusive transport of holes. Significantly, the crossover fields of the Hall resistivity slope at different temperatures correspond to the same magnetization, which is interpreted as the critical point of a magnetic field-driven percolative phase transition. At lower temperatures near the zero-field metal-insulator transition, pronounced enhancement of the Hall coefficient with the development of the AFI state is observed. The enhancement peaks near the magnetic field-driven percolation; its magnitude correlates with the strength of the AFI state and is suppressed with the melting of the AFI state by an in-plane magnetic field. The observations resemble many features of the enhancement of the Hall coefficient in granular metal films near the composition-driven percolation.

The effect of deposition oxygen pressure (P$_{O}$) on phase separation (PS) induced in epitaxial La$_{0.67}$Ca$_{0.33}$MnO$_{3}$/NdGaO$_{3}$(001) films was investigated. Fully oxygenated films grown at high P$_{O}$ are anisotropically strained. They exhibit PS over a wide temperature range, because of the large orthorhombicity of NdGaO$_{3}$ substrates. The paramagnetic insulator-to-ferromagnetic metal (FM) and FM-to-antiferromagnetic insulator (AFI) transitions gradually shift to lower temperatures with decreasing PO. The AFI state is initially weakened (P$_{O}$ >= 30 Pa), but then becomes more robust against the magnetic field (P$_{O}$ < 30 Pa). The out-of-plane film lattice parameter increases with decreasing P$_{O}$. For films grown at P$_{O}$>= 30 Pa, the slight oxygen deficiency may enlarge the lattice unit cell, reduce the anisotropic strain and suppress the AFI state. Films deposited at P$_{O}$ < 30 Pa instead experience an average compressive strain. The enhanced compressive strain and structural defects in the films may lead to the robust AFI state. These results aid our understanding of PS in manganite films., Comment: 17 pages,5 figures

The observed CMB (cosmic microwave background) dipole asymmetry cannot be explained by a single field model of inflation - it inevitably requires more than one field where one of the fields is responsible for amplifying the super-Hubble fluctuations beyond the pivot scale. Furthermore the current constraints on $f_NL$ and $tau_NL$ require that such an amplification cannot produce large non-Gaussianity. In this paper we propose a model to explain this dipole asymmetry from a spectator field, which is responsible for generating all the curvature perturbations, but has a temporary fast roll phase before the Hubble exit of the pivot scale. The current data prefers spectator scenario because it leaves no isocurvature perturbations. The spectator model will also satisfy the well-known constraints arising from quasars, and the quadrupole and octupole of the CMB., Comment: 15 pages, 5 figures, revision accepted by JCAP

In this paper we provide a prescription for obtaining a small non-Gaussianity and the observed dipole asymmetry in the cosmic microwave background radiation. The observations inevitably lead to multi-field inflationary dynamics, where each field can create positive or negative large non-Gaussianity, resulting a fine cancellation but with an observable imprint on the hemispherical asymmetry. We discuss this possibility within a simple slow-roll scenario and find that it is hard to explain the observed dipole asymmetry. We briefly discuss some speculative scenarios where one can explain dipole asymmetry., Comment: 4 pages, 1 figure, revision accepted by PRD

Inflation creates perturbations for the large scale structures in the universe, but it also dilutes everything. Therefore it is pertinent that the end of inflation must explain how to excite the Standard Model {\it dof} along with the dark matter. In this paper we will briefly discuss the role of visible sector inflaton candidates which are embedded within the Minimal Supersymmetric Standard Model (MSSM) and discuss their merit on how well they match the current data from the Planck. Since the inflaton carries the Standard Model charges their decay naturally produces all the relevant {\it dof} with no {\it dark/hidden sector radiation} and no isocurvature fluctuations. We will first discuss a single supersymmetric flat direction model of inflation and demonstrate what parameter space is allowed by the Planck and the LHC. We will also consider where the perturbations are created by another light field which decays after inflation, known as a {\it curvaton}. The late decay of the curvaton can create observable non-Gaussianity. In the end we will discuss the role of a {\it spectator} field whose origin may not lie within the visible sector physics, but its sheer presence during inflation can still create all the perturbations responsible for the large scale structures including possible non-Gaussianity, while the inflaton is embedded within the visible sector which creates all the relevant matter including dark matter, but no dark radiation., Comment: 24 pages, 9 figures, revision accepted by JCAP

In this paper we will discuss analytically the perturbations created from a slowly rolling subdominant spectator field which decays much before the end of inflation. The quantum fluctuations of such a spectator field can seed perturbations on very large scales and explain the temperature anisotropy in the cosmic microwave background radiation with moderate non-Gaussianity, provided the relevant modes leave the Hubble patch while the spectator is slowly rolling. Furthermore, the perturbations are purely {\it adiabatic} since the inflaton decay dominates and creates all the Standard Model degrees of freedom. We will provide two examples for the spectator field potential, one with a step function profile, and the other with an inflection point. In both the cases we will compute higher order curvature perturbations, i.e.\ local bispectrum and trispectrum, which can be constrained by the forthcoming Planck data., Comment: 21 pages, 6 figures, revision accepted by JCAP

Typically the fluctuations generated from a decaying field during inflation do not contribute to the large scale structures. In this paper we provide an example where it is possible for a field which slowly rolls and then decays during inflation to create all the matter perturbations with a slightly red-tilted spectral index, with no isocurvature perturbations, and with a possibility of a departure from Gaussian fluctuations., Comment: 4 pages, 2 figures, revision accepted by PRD

In this paper we provide a general framework based on $\delta N$ formalism to estimate the cosmological observables pertaining to the cosmic microwave background radiation for non-separable potentials, and for generic \emph{end of inflation} boundary conditions. We provide analytical and numerical solutions to the relevant observables by decomposing the cosmological perturbations along the curvature and the isocurvature directions, \emph{instead of adiabatic and entropy directions}. We then study under what conditions large bi-spectrum and tri-spectrum can be generated through phase transition which ends inflation. In an illustrative example, we show that large $f_{NL}\sim {\cal O}(80)$ and $\tau_{NL}\sim {\cal O}(20000)$ can be obtained for the case of separable and non-separable inflationary potentials., Comment: 21 pages, 6 figures

We take an analytic approach towards the framework of parametric resonance and apply it on preheating and locked inflation. A two-scalar toy model is analytically solved for the \lambda\phi^2\chi^2 coupling for the homogenous modes. The effects of dynamic universe background and backreaction are taken into account. We show the average effect of parametric resonance to be that \chi's amplitude doubles for each cycle of \phi. Our framework partly solves the preheating scenario, showing two distinct stages of preheating and making the parameters of preheating analytically calculable. It is demonstrated for slowroll inflation models, preheating is terminated, if by backreaction, typically in the 5th e-fold. Under our framework, a possible inhomogeneity amplification effect is also found during preheating, which both may pose strong constraints on some inflationary models and may amplify tiny existing inhomogeneities to the desired scale. For demonstration, we show it rules out the backreaction end of preheating of the quadratic slowroll inflation model with mass m\sim10^{-6}. For locked inflation, parametric resonance is found to be inhibited if \phi{} has more than one real component., Comment: 30 pages, 11 figures, revision accepted by JCAP

We introduce a string-inspired model for a bouncing/cyclic universe, utilizing the scalar-tachyon coupling as well as contribution from curvature in a closed universe. The universe undergoes the locked inflation, tachyon matter dominated rolling expansion, turnaround and contraction, as well as the subsequent deflation and "bounce" in each cycle of the cosmological evolution. We perform extensive analytic and numerical studies of the above evolution process. The minimum size of the universe is nonzero for generic initial values. The smooth bounce are made possible because of the negative contribution to effective energy density by the curvature term. No ghosts are ever generated at any point in the entire evolution of the universe, with the Null, Weak, and Dominant Energy Conditions preserved even at the bounce points, contrary to many bounce models previously proposed. And the Strong Energy Condition is satisfied in periods with tachyon matter domination., Comment: Extensive revision with comprehensive analytic and numerical studies of the locked inflation, the tachyon matter dominated process--rolling expansion, turnaround and contraction--as well as subsequent deflation and bounce process carefully presented. 31 pages and 21 figures