51. Structural basis for a highly (S)-enantioselective reductase towards aliphatic ketones with only one carbon difference between side chain
- Author
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Miki Senda, Daron M. Standley, Toshiya Senda, Tomoko Matsuda, Zichang Xu, Afifa Ayu Koesoema, and Yosuke Sugiyama
- Subjects
Ketone ,Stereochemistry ,Protein Conformation ,Reductase ,Applied Microbiology and Biotechnology ,Substrate Specificity ,03 medical and health sciences ,chemistry.chemical_compound ,Residue (chemistry) ,Side chain ,030304 developmental biology ,Alcohol dehydrogenase ,chemistry.chemical_classification ,0303 health sciences ,Binding Sites ,Crystallography ,biology ,030306 microbiology ,Enantioselective synthesis ,Stereoisomerism ,General Medicine ,Ketones ,Geotrichum ,Carbon ,Molecular Docking Simulation ,Alcohol Oxidoreductases ,Kinetics ,chemistry ,Docking (molecular) ,biology.protein ,Oxidoreductases ,Oxidation-Reduction ,Biotechnology ,Acetophenone - Abstract
Aliphatic ketones, such as 2-butanone and 3-hexanone, with only one carbon difference among side chains adjacent to the carbonyl carbon are difficult to be reduced enantioselectively. In this study, we utilized an acetophenone reductase from Geotrichum candidum NBRC 4597 (GcAPRD) to reduce challenging aliphatic ketones such as 2-butanone (methyl ethyl ketone) and 3-hexanone (ethyl propyl ketone) to their corresponding (S)-alcohols with 94% ee and > 99% ee, respectively. Through crystallographic structure determination, it was suggested that residue Trp288 limit the size of the small binding pocket. Docking simulations imply that Trp288 plays an important role to form a C-H⋯π interaction for proper orientation of ketones in the pro-S binding pose in order to produce (S)-alcohols. The excellent (S)-enantioselectivity is due to a non-productive pro-R binding pose, consistent with the observation that the (R)-alcohol acts as an inhibitor of (S)-alcohol oxidation.
- Published
- 2019