51. A New SNP in Rice Gene Encoding Pyruvate Phosphate Dikinase (PPDK) Associated with Floury Endosperm
- Author
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Sun Tae Kim, Seong-Gyu Jang, Tae-Ho Ham, Da-Eun Im, Ji-Ung Jeung, Youngjun Mo, Heng Wang, Soon-Wook Kwon, San Mar Lar, and Joohyun Lee
- Subjects
0106 biological sciences ,0301 basic medicine ,lcsh:QH426-470 ,Starch ,Mutant ,Flour ,01 natural sciences ,Polymorphism, Single Nucleotide ,flo4-5 ,Article ,Gene Expression Regulation, Enzymologic ,Endosperm ,03 medical and health sciences ,Pyruvate, phosphate dikinase ,chemistry.chemical_compound ,Amylose ,Gene Expression Regulation, Plant ,Cleaved amplified polymorphic sequence ,Genetics ,Oryza sativa L ,floury endosperm ,Genetics (clinical) ,Plant Proteins ,biology ,Wild type ,PPDK ,food and beverages ,Oryza ,Pyruvate, Orthophosphate Dikinase ,lcsh:Genetics ,030104 developmental biology ,Phenotype ,chemistry ,Biochemistry ,biology.protein ,Starch synthase ,010606 plant biology & botany - Abstract
Rice varieties with suitable flour-making qualities are required to promote the rice processed-food industry and to boost rice consumption. A rice mutation, Namil(SA)-flo1, produces grains with floury endosperm. Overall, grains with low grain hardness, low starch damage, and fine particle size are more suitable for use in flour processing grains with waxy, dull endosperm with normal grain hardness and a high amylose content. In this study, fine mapping found a C to T single nucleotide polymorphism (SNP) in exon 2 of the gene encoding cytosolic pyruvate phosphate dikinase (cyOsPPDK). The SNP resulted in a change of serine to phenylalanine acid at amino acid position 101. The gene was named FLOURY ENDOSPERM 4-5 (FLO4-5). Co-segregation analysis with the developed cleaved amplified polymorphic sequence (CAPS) markers revealed co-segregation between the floury phenotype and the flo4-5. This CAPS marker could be applied directly for marker-assisted selection. Real-time RT-PCR experiments revealed that PPDK was expressed at considerably higher levels in the flo4-5 mutant than in the wild type during the grain filling stage. Plastid ADP-glucose pyrophosphorylase small subunit (AGPS2a and AGPS2b) and soluble starch synthase (SSIIb and SSIIc) also exhibited enhanced expression in the flo4-5 mutant.
- Published
- 2020