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Non-closure of the surface energy balance is a frequently observed phenomenon of hydrometeorological field measurements, when using the eddy-covariance method, which can be ascribed to an underestimation of the turbulent fluxes. Several approaches have been proposed in order to adjust the measured fluxes for this apparent systematic error. However, there are uncertainties about partitioning of the energy balance residual between the sensible and latent heat flux and whether such a correction should be applied on 30-min data or longer time scales. The data for this study originate from two grassland sites in southern Germany, where measurements from weighable lysimeters are available as reference. The adjusted evapotranspiration rates are also compared with joint energy and water balance simulations using a physically based distributed hydrological model. We evaluate two adjustment methods: the first one preserves the Bowen ratio and the correction factor is determined on a daily basis. The second one attributes a smaller portion of the residual energy to the latent heat flux than to the sensible heat flux for closing the energy balance for every 30-min flux integration interval. Both methods lead to an improved agreement of the eddy-covariance based fluxes with the independent lysimeter estimates and the physically based model simulations. The first method results in a better comparability of evapotranspiration rates, and the second method leads to a smaller overall bias. These results are similar between both sites despite considerable differences in terrain complexity and grassland management. Moreover, we found that a daily adjustment factor leads to less scatter than a complete partitioning of the residual for every half-hour time interval. The vertical temperature gradient in the surface layer and friction velocity were identified as important predictors for a potential future parameterisation of the energy balance residual. [ABSTRACT FROM AUTHOR]

Studying turbulence in vegetation canopies is important in the context of a number of micrometeorological and hydrological applications. While recent focus has shifted more towards exploring different kinds of canopy heterogeneities, there are still gaps in the existing knowledge on the multiple types of dynamics involved in the case of horizontally homogeneous canopies. For example, experimental studies have indicated that turbulence in the canopy sublayer (CSL) can be divided into three regimes. In the deep-zone, the flow-field is dominated by von Kármán vortex streets and interrupted by strong sweep events. The second zone near the canopy top is dominated by attached eddies and Kelvin-Helmholtz waves associated with the velocity inflection point in the mean longitudinal velocity profile. Above the canopy, the flow resembles classical boundary layer flow. In this study, these different kinds of dynamics are studied together by means of a large eddy simulation (LES). The main theme of this work is to address the question whether the parametrization of the canopy by a distributed drag force in numerical simulations instead of placing real solid obstacles is consistent with the three layer conceptual model. Unique techniques such as measures from information theory and coupled oscillator analysis are used to extract the coherent structures associated with the two motions. It can be stated that a better understanding of the rich dynamics associated with the simplest case of canopy turbulence can lead to more efficient simulations and more importantly improve the interpretation of more complex scenarios. [ABSTRACT FROM AUTHOR]

The role of secondary circulations has recently been studied in the context of well defined surface heterogeneity in a semi-arid ecosystem where it was found that energy balance closure over a desert-forest system and the structure of the boundary layer was impacted by advection and flux divergence. As a part of the CliFF (Climate Feedbacks and benefits of semi-arid forests, a collaboration between KIT, Germany and the Weizmann Institute, Israel) campaign, we studied the boundary layer dynamics and turbulent transport of energy corresponding to this effect in the Yatir forest situated in the Negev desert in Israel. The forest surrounded by small shrubs presents a distinct feature of surface heterogeneity, allowing us to study the differences between their interactions with the atmosphere above by conducting measurements with two EC stations and two Doppler LiDARs. As expected, the turbulence intensity and vertical fluxes of momentum and sensible heat are found to be higher above the forest compared to the shrubland. Turbulent statistics indicative of nonlocal motions are also found to differ over the forest and shrubland and also display a strong diurnal cycle. The production of turbulent kinetic energy (TKE) over the forest is strongly mechanical, while buoyancy effects generate most of the TKE over the shrubland. Overall TKE production is much higher above the forest compared to the shrubland. The forest is also found to be more efficient in dissipating TKE. The TKE budget appears to be balanced on average both for the forest and shrubland, although the imbalance of the TKE budget, which contains the role of TKE transport, is found to be quite different in terms of their variation with atmospheric stability and diurnal cycles for the forest and shrubland. The effect of very large mesoscale motions is also directly quantified following a recent formulation by Banerjee and Katul, 2013, using the measured longitudinal velocity variances and boundary layer heights. The difference of turbulent quantities and the relationships between the components of TKE budget are used to infer the characteristics of turbulent transport of energy between the desert and the forest. [ABSTRACT FROM AUTHOR]

The mean velocity profile (MVP) in thermally stratified atmospheric surface layers (ASLs) deviates from the classic logarithmic form. A theoretical framework was recently proposed (Katul et al. Phys. Rev. Lett., vol. 107, 2011, 268502) to link the MVP to the spectrum of turbulence and was found to successfully predict the MVP for unstable stratification. However, the theory failed to reproduce the MVP in stable conditions (Salesky et al. Phys. Fluids, vol. 25, 2013, 105101), especially when ζ >0.2 (where ζ is the atmospheric stability parameter). In the present study, it is demonstrated that this shortcoming is due to the failure to identify the appropriate length scale that characterizes the size of momentum transporting eddies in the stable ASL. Beyond ζ ≈0.2 (near where the original theory fails), the Ozmidov length scale becomes smaller than the distance from the wall z and hence is a more stringent constraint for characterizing the size of turbulent eddies. An expression is derived to connect the Ozmidov length scale to the normalized MVP (ϕm), allowing ϕm to be solved numerically. It is found that the revised theory produces a prediction of ϕm in good agreement with the widely used empirical Businger-Dyer relation and two experimental datasets in the stable ASL. The results here demonstrate that the behaviour of ϕm in the stable ASL is closely linked to the size of momentum transporting eddies, which can be characterized by the Ozmidov scale under mildly to moderately stable conditions (0.2<ζ <1-2). [ABSTRACT FROM AUTHOR]

A spectral budget model is developed to describe the scaling behavior of the longitudinal turbulent velocity variance with the stability parameter and the normalized height in an idealized stably stratified atmospheric surface layer (ASL), where z is the height from the surface, L is the Obukhov length, and δ is the boundary layer height. The proposed framework employs Kolmogorov's hypothesis for describing the shape of the longitudinal velocity spectra in the inertial subrange, Heisenberg's eddy viscosity as a closure for the pressure redistribution and turbulent transfer terms, and the Monin-Obukhov similarity theory (MOST) scaling for linking the mean longitudinal velocity and temperature profiles to ζ. At a given friction velocity , reduces with increasing ζ as expected. The model is consistent with the disputed z-less stratification when the stability correction function for momentum increases with increasing ζ linearly or as a power law with the exponent exceeding unity. For the Businger-Dyer stability correction function for momentum, which varies linearly with ζ, the limit of the z-less onset is . The proposed framework explains why does not follow MOST scaling even when the mean velocity and temperature profiles may follow MOST in the ASL. It also explains how δ ceases to be a scaling variable in more strongly stable (although well-developed turbulent) ranges. [ABSTRACT FROM AUTHOR]

High frequency (30 Hz) two-dimensional particle image velocimetry data recorded during a field experiment exploring fire spread from point ignition in hand-spread pine needles under calm ambient wind conditions are analysed in this study. In the initial stages, as the flame spreads approximately radially away from the ignition point in the absence of a preferred wind-forcing direction, it entrains cooler ambient air into the warmer fire core, thereby experiencing a dynamic pressure resistance. The fire-front, comprising a flame that is tilted inward, is surrounded by a region of downdraft. Coherent structures describe the initial shape of the fire-front and its response to local wind shifts while also revealing possible fire-spread mechanisms. Vortex tubes originating outside the fire spiral inward and get stretched thinner at the fire-front leading to higher vorticity there. These tubes comprise circulation structures that induce a radially outward velocity close to the fuel bed, which pushes hot gases outward, thereby causing the fire to spread. Moreover, these circulation structures confirm the presence of counter-rotating vortex pairs that are known to be a key mechanism for fire spread. The axis of the vortex tubes changes its orientation alternately towards and away from the surface of the fuel bed, causing the vortex tubes to be kinked. The strong updraft observed at the location of the fire-front could potentially advect and tilt the kinked vortex tube vertically upward leading to fire-whirl formation. As the fire evolves, its perimeter disintegrates in response to flow instabilities to form smaller fire "pockets". These pockets are confined to certain points in the flow field that remain relatively fixed for a while and resemble the behavior of a chaotic system in the vicinity of an attractor. Increased magnitudes of the turbulent fluxes of horizontal momentum, computed at certain such fixed points along the fire-front, are symptomatic of irregular fire bursts and help contextualize the fire spread. Most importantly, the time-varying transport terms of the turbulent kinetic energy budget equation computed at adjacent fixed points indicate that local fires along the fire-front primarily interact via the horizontal turbulent transport term. [ABSTRACT FROM AUTHOR]

Wildland fire–atmosphere interaction generates complex turbulence patterns, organized across multiple scales, which inform fire-spread behaviour, firebrand transport, and smoke dispersion. Here, we utilize wavelet-based techniques to explore the characteristic temporal scales associated with coherent patterns in the measured temperature and the turbulent fluxes during a prescribed wind-driven (heading) surface fire beneath a forest canopy. We use temperature and velocity measurements from tower-mounted sonic anemometers at multiple heights. Patterns in the wavelet-based energy density of the measured temperature plotted on a time–frequency plane indicate the presence of fire-modulated ramp–cliff structures in the low-to-mid-frequency band (0.01–0.33 Hz), with mean ramp durations approximately 20% shorter and ramp slopes that are an order of magnitude higher compared to no-fire conditions. We then investigate heat- and momentum-flux events near the canopy top through a cross-wavelet coherence analysis. Briefly before the fire-front arrives at the tower base, momentum-flux events are relatively suppressed and turbulent fluxes are chiefly thermally-driven near the canopy top, owing to the tilting of the flame in the direction of the wind. Fire-induced heat-flux events comprising warm updrafts and cool downdrafts are coherent down to periods of a second, whereas ambient heat-flux events operate mainly at higher periods (above 17 s). Later, when the strongest temperature fluctuations are recorded near the surface, fire-induced heat-flux events occur intermittently at shorter scales and cool sweeps start being seen for periods ranging from 8 to 35 s near the canopy top, suggesting a diminishing influence of the flame and increasing background atmospheric variability thereat. The improved understanding of the characteristic time scales associated with fire-induced turbulence features, as the fire-front evolves, will help develop more reliable fire behaviour and scalar transport models. [ABSTRACT FROM AUTHOR]

Mesoscale‐to‐microscale coupling is an important tool for conducting turbulence‐resolving multiscale simulations of realistic atmospheric flows, which are crucial for applications ranging from wind energy to wildfire spread studies. Different techniques are used to facilitate the development of realistic turbulence in the large‐eddy simulation (LES) domain while minimizing computational cost. Here, we explore the impact of a simple and computationally efficient Stochastic Cell Perturbation method using momentum perturbation (SCPM‐M) to accelerate turbulence generation in boundary‐coupled LES simulations using the Weather Research and Forecasting model. We simulate a convective boundary layer (CBL) to characterize the production and dissipation of turbulent kinetic energy (TKE) and the variation of TKE budget terms. Furthermore, we evaluate the impact of applying momentum perturbations of three magnitudes below, up to, and above the CBL on the TKE budget terms. Momentum perturbations greatly reduce the fetch associated with turbulence generation. When applied to half the vertical extent of the boundary layer, momentum perturbations produce an adequate amount of turbulence. However, when applied above the CBL, additional structures are generated at the top of the CBL, near the inversion layer. The magnitudes of the TKE budgets produced by SCPM‐M when applied at varying heights and with different perturbation amplitudes are always higher near the surface and inversion layer than those produced by No‐SCPM, as are their contributions to the TKE. This study provides a better understanding of how SCPM‐M reduces computational costs and how different budget terms contribute to TKE in a boundary‐coupled LES simulation. Plain Language Summary: Grid nesting is a technique in atmospheric modeling where smaller model domains with finer resolutions are embedded in larger domains with coarser resolutions, allowing us to simulate processes for which a range of resolutions is important. When nesting a micro‐scale domain, which resolves atmospheric turbulence, within a mesoscale domain, where turbulence is parameterized instead, the micro‐scale domain needs to generate turbulence. This can take a long distance, reducing the area within the micro‐scale domain where turbulence is fully developed. Turbulence generation methods can speed up this process, leading to more efficient multi‐scale simulations. Here, we take a close look at one such turbulence generation method, which applies random perturbations to the momentum field along the boundaries of the micro‐scale domain. We test several different configurations of momentum perturbations and evaluate their impacts on the turbulent kinetic energy budget within the micro‐scale domain. Our results can be used as guidance on how to apply momentum perturbations most efficiently in grid‐nested simulations. Key Points: The fetch is reduced after applying momentum perturbation and the reduction is directly proportional to the amplitude of the perturbationsApplying momentum perturbation up to half the boundary layer height produces an adequate amount of turbulence without additional entrainmentMomentum perturbations result in turbulent kinetic energy budget terms of higher magnitude than simulations without perturbations [ABSTRACT FROM AUTHOR]

Due to the mixed distribution of buildings and vegetation, wildland-urban interface (WUI) areas are characterized by complex fuel distributions and geographical environments. The behavior of wildfires occurring in the WUI often leads to severe hazards and significant damage to man-made structures. Therefore, WUI areas warrant more attention during the wildfire season. Due to the ever-changing dynamic nature of California's population and housing, the update frequency and resolution of WUI maps that are currently used can no longer meet the needs and challenges of wildfire management and resource allocation for suppression and mitigation efforts. Recent developments in remote sensing technology and data analysis algorithms pose new opportunities for improving WUI mapping methods. WUI areas in California were directly mapped using building footprints extracted from remote sensing data by Microsoft along with the fuel vegetation cover from the LANDFIRE dataset in this study. To accommodate the new type of datasets, we developed a threshold criteria for mapping WUI based on statistical analysis, as opposed to using more ad-hoc criteria as used in previous mapping approaches. This method removes the reliance on census data in WUI mapping, and does not require the calculation of housing density. Moreover, this approach designates the adjacent areas of each building with large and dense parcels of vegetation as WUI, which can not only refine the scope and resolution of the WUI areas to individual buildings, but also avoids zoning issues and uncertainties in housing density calculation. Besides, the new method has the capability of updating the WUI map in real-time according to the operational needs. Therefore, this method is suitable for local governments to map local WUI areas, as well as formulating detailed wildfire emergency plans, evacuation routes, and management measures. [ABSTRACT FROM AUTHOR]

Butterfly wings display a diversity of cell types, including large polyploid scale cells, yet the molecular basis of such diversity is poorly understood. To explore scale cell diversity at a transcriptomic level, we employ single-cell RNA sequencing of ∼5,200 large cells (>6 μm) from 22.5- to 25-h male pupal forewings of the butterfly Bicyclus anynana. Using unsupervised clustering, followed by in situ hybridization, immunofluorescence, and CRISPR-Cas9 editing of candidate genes, we annotate various cell types on the wing. We identify genes marking non-innervated scale cells, pheromone-producing glandular cells, and innervated sensory cell types. We show that senseless, a zinc-finger transcription factor, and HR38, a hormone receptor, determine the identity, size, and color of different scale cell types and are important regulators of scale cell differentiation. This dataset and the identification of various wing cell-type markers provide a foundation to compare and explore scale cell-type diversification across arthropod species., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2024 The Authors. Published by Elsevier Inc. All rights reserved.)

If the same pigment is found in different tissues in a body, it is natural to assume that the same metabolic pathways are deployed similarly in each tissue. Here we show that this is not the case for ommochromes, the red and orange pigments found in the eyes and wings of butterflies. We tested the expression and function of vermilion and cinnabar, two known fly genes in the ommochrome pathway, in the development of pigments in the eyes and in the wings of Bicyclus anynana butterflies, both traits having reddish/orange pigments. By using fluorescent in-situ hybridization (HCR3.0) we localized the expression of vermilion and cinnabar in the cytoplasm of pigment cells in the ommatidia but observed no clear expression for either gene on larval and pupal wings. We then disrupted the function of both genes, using CRISPR-Cas9, which resulted in the loss of pigment in the eyes but not in the wings. Using thin-layer chromatography and UV-vis spectroscopy we identified the presence of ommochrome and ommochrome precursors in the orange wing scales and in the hemolymph of pupae. We conclude that the wings either synthesize ommochromes locally, with yet unidentified enzymes or incorporate these pigments synthesized elsewhere from the hemolymph. Different metabolic pathways or transport mechanisms, thus, lead to the presence of ommochromes in the wings and eyes of B. anynana butterflies., (© 2023. The Author(s).)

Fire is an integral component of ecosystems globally and a tool that humans have harnessed for millennia. Altered fire regimes are a fundamental cause and consequence of global change, impacting people and the biophysical systems on which they depend. As part of the newly emerging Anthropocene, marked by human-caused climate change and radical changes to ecosystems, fire danger is increasing, and fires are having increasingly devastating impacts on human health, infrastructure, and ecosystem services. Increasing fire danger is a vexing problem that requires deep transdisciplinary, trans-sector, and inclusive partnerships to address. Here, we outline barriers and opportunities in the next generation of fire science and provide guidance for investment in future research. We synthesize insights needed to better address the long-standing challenges of innovation across disciplines to (i) promote coordinated research efforts; (ii) embrace different ways of knowing and knowledge generation; (iii) promote exploration of fundamental science; (iv) capitalize on the "firehose" of data for societal benefit; and (v) integrate human and natural systems into models across multiple scales. Fire science is thus at a critical transitional moment. We need to shift from observation and modeled representations of varying components of climate, people, vegetation, and fire to more integrative and predictive approaches that support pathways toward mitigating and adapting to our increasingly flammable world, including the utilization of fire for human safety and benefit. Only through overcoming institutional silos and accessing knowledge across diverse communities can we effectively undertake research that improves outcomes in our more fiery future., (Published by Oxford University Press on behalf of National Academy of Sciences 2022.)

The environmental pollution, property losses and casualties caused by wildfires in California are getting worse by the year. To minimize the interference of wildfires on economic and social development, and formulate targeted mitigation strategies, it is imperative to understand the scale and extent of previous wildfire occurrences. In this study, we first investigated the temporal distributions of past wildfires in California divided by size and causes and analyzed the changes observed in the past two decades against the last century. The trend of wildfires in different time scales (yearly and monthly), as well as the distribution of wildfires across different spatial scales (administrative units, climate divisions in California from 2000 to 2019) were also studied. Furthermore, to extract the significant variables on the risk of wildfire occurrence, multivariate analyses of environmental and human-related variables with wildfire densities were carried out. The results show that the wildfire density distribution of the burned area in California conforms to the characteristics of the Pareto distribution. Over the past two decades, the frequency of small (< 500 acres), human-caused wildfires has increased most rapidly, and they are widely distributed in central and western California. The wildfire season has lengthened and the peak months have been advanced from August to July. In terms of the variables related to the risk of wildfire occurrence, the temperature, vapor pressure deficit, grass cover, and the distance to roads are crucial. This study reveals the relationship between environmental and social background conditions and the spatial-temporal distribution of wildfires, which can provide a reference for wildfire management, the formulation of future targeted wildfire emergency plans, and the planning of future land use in California.

Eyespots on the wings of nymphalid butterflies represent colorful examples of pattern formation, yet the developmental origins and mechanisms underlying eyespot center differentiation are still poorly understood. Using CRISPR-Cas9 we re-examine the function of Distal-less (Dll) as an activator or repressor of eyespots, a topic that remains controversial. We show that the phenotypic outcome of CRISPR mutations depends upon which specific exon is targeted. In Bicyclus anynana , exon 2 mutations are associated with both missing and ectopic eyespots, and also exon skipping. Exon 3 mutations, which do not lead to exon skipping, produce only null phenotypes, including missing eyespots, lighter wing coloration and loss of scales. Reaction-diffusion modeling of Dll function, using Wnt and Dpp as candidate morphogens, accurately replicates these complex crispant phenotypes. These results provide new insight into the function of Dll as a potential activator of eyespot development, scale growth and melanization, and suggest that the tuning of Dll expression levels can generate a diversity of eyespot phenotypes, including their appearance on the wing.This article has an associated 'The people behind the papers' interview., Competing Interests: Competing interestsThe authors declare no competing or financial interests., (© 2019. Published by The Company of Biologists Ltd.)