2,128 results on '"Georgiadis, P."'
Search Results
102. Linear-Time Algorithms for Computing Twinless Strong Articulation Points and Related Problems
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Georgiadis, Loukas and Kosinas, Evangelos
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Computer Science - Data Structures and Algorithms - Abstract
A directed graph $G=(V,E)$ is twinless strongly connected if it contains a strongly connected spanning subgraph without any pair of antiparallel (or twin) edges. The twinless strongly connected components (TSCCs) of a directed graph $G$ are its maximal twinless strongly connected subgraphs. These concepts have several diverse applications, such as the design of telecommunication networks and the structural stability of buildings. A vertex $v \in V$ is a twinless strong articulation point of $G$ if the deletion of $v$ increases the number of TSCCs of $G$. Here, we present the first linear-time algorithm that finds all the twinless strong articulation points of a directed graph. We show that the computation of twinless strong articulation points reduces to the following problem in undirected graphs, which may be of independent interest: Given a $2$-vertex-connected (biconnected) undirected graph $H$, find all vertices $v$ that belong to a vertex-edge cut-pair, i.e., for which there exists an edge $e$ such that $H \setminus \{v,e\}$ is not connected. We develop a linear-time algorithm that not only finds all such vertices $v$, but also computes the number of edges $e$ such that $H \setminus \{v,e\}$ is not connected. This also implies that for each twinless strong articulation point $v$ which is not a strong articulation point in a strongly connected digraph $G$, we can compute the number of TSCCs in $G \setminus v$. We note that the problem of computing all vertices that belong to a vertex-edge cut-pair can be solved in linear-time by exploiting the structure of $3$-vertex-connected (triconnected) components of $H$, represented by an SPQR tree of $H$. Our approach, however, is conceptually simple, and thus likely to be more amenable to practical implementations.
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- 2020
103. Post-Training Piecewise Linear Quantization for Deep Neural Networks
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Fang, Jun, Shafiee, Ali, Abdel-Aziz, Hamzah, Thorsley, David, Georgiadis, Georgios, and Hassoun, Joseph
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Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Machine Learning - Abstract
Quantization plays an important role in the energy-efficient deployment of deep neural networks on resource-limited devices. Post-training quantization is highly desirable since it does not require retraining or access to the full training dataset. The well-established uniform scheme for post-training quantization achieves satisfactory results by converting neural networks from full-precision to 8-bit fixed-point integers. However, it suffers from significant performance degradation when quantizing to lower bit-widths. In this paper, we propose a piecewise linear quantization (PWLQ) scheme to enable accurate approximation for tensor values that have bell-shaped distributions with long tails. Our approach breaks the entire quantization range into non-overlapping regions for each tensor, with each region being assigned an equal number of quantization levels. Optimal breakpoints that divide the entire range are found by minimizing the quantization error. Compared to state-of-the-art post-training quantization methods, experimental results show that our proposed method achieves superior performance on image classification, semantic segmentation, and object detection with minor overhead.
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- 2020
104. Fragment- and structure-based drug discovery for developing therapeutic agents targeting the DNA Damage Response
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Wilson, David M, Deacon, Ashley M, Duncton, Matthew AJ, Pellicena, Patricia, Georgiadis, Millie M, Yeh, Andrew P, Arvai, Andrew S, Moiani, Davide, Tainer, John A, and Das, Debanu
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Biochemistry and Cell Biology ,Biological Sciences ,Biotechnology ,Cancer ,Genetics ,5.1 Pharmaceuticals ,Development of treatments and therapeutic interventions ,Crystallography ,X-Ray ,DNA Damage ,DNA Repair ,Drug Discovery ,Pharmaceutical Preparations ,Fragment-based drug discovery ,Structure-based drug discovery ,X-ray crystallography ,Cancer therapeutics ,DNA damage Response ,DNA repair ,MRE11 ,APE1 ,FEN1 ,Biophysics ,Biochemistry and cell biology - Abstract
Cancer will directly affect the lives of over one-third of the population. The DNA Damage Response (DDR) is an intricate system involving damage recognition, cell cycle regulation, DNA repair, and ultimately cell fate determination, playing a central role in cancer etiology and therapy. Two primary therapeutic approaches involving DDR targeting include: combinatorial treatments employing anticancer genotoxic agents; and synthetic lethality, exploiting a sporadic DDR defect as a mechanism for cancer-specific therapy. Whereas, many DDR proteins have proven "undruggable", Fragment- and Structure-Based Drug Discovery (FBDD, SBDD) have advanced therapeutic agent identification and development. FBDD has led to 4 (with ∼50 more drugs under preclinical and clinical development), while SBDD is estimated to have contributed to the development of >200, FDA-approved medicines. Protein X-ray crystallography-based fragment library screening, especially for elusive or "undruggable" targets, allows for simultaneous generation of hits plus details of protein-ligand interactions and binding sites (orthosteric or allosteric) that inform chemical tractability, downstream biology, and intellectual property. Using a novel high-throughput crystallography-based fragment library screening platform, we screened five diverse proteins, yielding hit rates of ∼2-8% and crystal structures from ∼1.8 to 3.2 Å. We consider current FBDD/SBDD methods and some exemplary results of efforts to design inhibitors against the DDR nucleases meiotic recombination 11 (MRE11, a.k.a., MRE11A), apurinic/apyrimidinic endonuclease 1 (APE1, a.k.a., APEX1), and flap endonuclease 1 (FEN1).
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- 2021
105. Improving Delivery Behaviors During Exposure for Pediatric OCD: A Multiple Baseline Training Trial With Community Therapists.
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Benito, Kristen, Herren, Jennifer, Freeman, Jennifer, Garcia, Abbe, Block, Paul, Cantor, Elizabeth, Chorpita, Bruce, Wellen, Brianna, Stewart, Elyse, Georgiadis, Christopher, Frank, Hannah, and Machan, Jason
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exposure ,mechanism ,training ,Adolescent ,Benchmarking ,Child ,Cognitive Behavioral Therapy ,Humans ,Implosive Therapy ,Obsessive-Compulsive Disorder ,Research Design ,Treatment Outcome - Abstract
This study tested whether a new training tool, the Exposure Guide (EG), improved in-session therapist behaviors (i.e., indicators of quality) that have been associated with youth outcomes in prior clinical trials of exposure therapy. Six therapists at a community mental health agency (CMHA) provided exposure therapy for 8 youth with obsessive-compulsive disorder (OCD). Using a nonconcurrent multiple baseline design with random assignment to baseline lengths of 6 to 16 weeks, therapists received gold-standard exposure therapy training with weekly consultation (baseline phase) followed by addition of EG training and feedback (intervention phase). The primary outcome was therapist behavior during in-session exposures, observed weekly using a validated coding system. Therapist behavior was evaluated in relation to a priori benchmarks derived from clinical trials. Additional outcomes included training feasibility/acceptability, therapist response to case vignettes and beliefs about exposure, and independent evaluator-rated clinical outcomes. Three therapists reached behavior benchmarks only during the EG (intervention) phase. Two therapists met benchmarks during the baseline phase; one of these subsequently moved away from benchmarks but met them again after starting the EG phase. Across all therapists, the percentage of weeks meeting benchmarks was significantly higher during the EG phase (86.4%) vs. the baseline phase (53.2%). Youth participants experienced significant improvement in OCD symptoms and global illness severity from pre- to posttreatment. Results provide initial evidence that adding the EG to gold-standard training can change in-session therapist behaviors in a CMHA setting.
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- 2021
106. Effects of processed meat and drinking water nitrate on oral and fecal microbial populations in a controlled feeding study
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Sinha, Rashmi, Zhao, Ni, Goedert, James J, Byrd, Doratha A, Wan, Yunhu, Hua, Xing, Hullings, Autumn G, Knight, Rob, van Breda, Simone, Mathijs, Karen, de Kok, Theo M, Ward, Mary H, members, PHYTOME consortium, Pieters, Harm-Jan, Sági-Kiss, Virág, Kuhnle, Gunter G, Georgiadis, Panagiotis, Saccani, Giovanna, Parolari, Giovanni, Virgili, Roberta, Hemke, Gert, Hung, Yung, Verbeke, Wim, Masclee, Ad A, Vleugels-Simon, Carla B, van Bodegraven, Adriaan A, Dobbelaere, Dirk, Vandewynkel, Anneleen, van der Kruijk, Richard, Egberts, Frans, and van Helvoirt, Jan-Hein
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Biological Sciences ,Environmental Sciences ,Chemical Sciences ,Digestive Diseases ,Nutrition ,Cancer ,Oral and gastrointestinal ,Diet ,Drinking Water ,Humans ,Meat ,Nitrates ,Nitrites ,RNA ,Ribosomal ,16S ,Processed meat ,Water nitrate ,Nitrite ,Oral and fecal microbiome ,Phytochemicals ,PHYTOME consortium members ,Toxicology ,Biological sciences ,Chemical sciences ,Environmental sciences - Abstract
BackgroundOne mechanism that can explain the link between processed meat consumption and colorectal cancer (CRC) is the production of carcinogenic N-nitroso compounds (NOCs) in the gastrointestinal tract. Oral and gut microbes metabolize ingested proteins (a source of secondary and tertiary amines and amides) and can reduce nitrate to nitrite, generating potentially carcinogenic NOCs.ObjectiveWe evaluated whether nitrate/nitrite in processed meat or water influences the fecal or salivary microbiota.DesignIn this dietary intervention study, 63 volunteers consumed diets high in conventional processed meats for two weeks, switched to diets high in poultry for two weeks, and then consumed phytochemical-enriched conventional processed or low-nitrite processed meat diets for two weeks. During the intervention, they drank water with low nitrate concentrations and consumed a healthy diet with low antioxidants. Then the volunteers drank nitrate-enriched water for 1 week, in combination with one of the four different diets. We measured creatinine-adjusted urinary nitrate levels and characterized the oral and fecal microbiota using 16S rRNA amplicon sequencing.ResultsUsing linear mixed models, we found that, compared to baseline, urinary nitrate levels were reduced during the phytochemical-enriched low-nitrite meat diet (p-value = 0.009) and modestly during the poultry diet (p-value = 0.048). In contrast, urinary nitrate increased after 1-week of drinking nitrate-enriched water (p-value
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- 2021
107. A Virtual Reality Museum to Reinforce the Interpretation of Contemporary Art and Increase the Educational Value of User Experience
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Christina Tsita, Maya Satratzemi, Alexandros Pedefoudas, Charalabos Georgiadis, Maria Zampeti, Evi Papavergou, Syrago Tsiara, Eleni Sismanidou, Petros Kyriakidis, Dionysios Kehagias, and Dimitrios Tzovaras
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virtual reality ,virtual museum ,cultural heritage ,user experience ,3D representation ,Archaeology ,CC1-960 - Abstract
The cultural heritage sector increasingly integrates augmented and virtual reality (VR) solutions to meet dissemination and interpretation needs for its collections. As research in the field grows, the required entertainment and learning impacts of such applications are rising. This study presents a VR museum that aims to facilitate an understanding of cultural heritage. More specifically, an exhibition was designed, curated and developed in a VR environment based on a framework that encourages the public’s interaction with the artworks and experiential learning through activities that utilize VR functionalities in a meaningful way. This framework was applied in a contemporary art museum where the description of artistic concepts is not always obvious to the general public due to the abstract forms of the artworks or the particularities of different artistic movements. This paper focuses on the application development and three user experience evaluations (museum experts, technical experts and general audience). The results were positive regarding the perceived sense of control, usability and the feelings of the user, including their sense of entertainment. Additionally, the participants valued the educational value of the developed activity types and their usefulness. Moreover, the users were interested in exploring the cultural heritage content available in the exhibition, and they would suggest the application to colleagues or friends.
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- 2023
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108. The effects of biologic agents on cardiovascular risk factors and atherosclerosis in rheumatoid arthritis patients: a prospective observational study
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Papamichail, G. V., Markatseli, T. E., Georgiadis, A. N., Xydis, V. G., Milionis, H., Drosos, A. A., and Voulgari, P. V.
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- 2022
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109. Innovative Biomarkers for Obesity and Type 1 Diabetes Based on Bifidobacterium and Metabolomic Profiling
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Angelica Nobili, Marco Pane, Mariya Skvortsova, Meryam Ben Salem, Stephan Morgenthaler, Emily Jamieson, Marina Di Stefano, Eirini Bathrellou, Eirini Mamalaki, Victoria Ramos-Garcia, Julia Kuligowski, Miltiadis Vasileiadis, Panagiotis Georgiadis, Marika Falcone, and Paulo Refinetti
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gut microbiome ,Bifidobacterium ,short-chain fatty acids ,branched amino acids ,obesity ,type 1 diabetes ,Biology (General) ,QH301-705.5 - Abstract
The role of Bifidobacterium species and microbial metabolites such as short-chain fatty acids (SCFAs) and human milk oligosaccharides in controlling intestinal inflammation and the pathogenesis of obesity and type 1 diabetes (T1D) has been largely studied in recent years. This paper discusses the discovery of signature biomarkers for obesity and T1D based on data from a novel test for profiling several Bifidobacterium species, combined with metabolomic analysis. Through the NUTRISHIELD clinical study, a total of 98 children were recruited: 40 healthy controls, 40 type 1 diabetics, and 18 obese children. Bifidobacterium profiles were assessed in stool samples through an innovative test allowing high taxonomic resolution and precise quantification, while SCFAs and branched amino acids were measured in urine samples through gas chromatography–mass spectrometry (GC-MS). KIDMED questionnaires were used to evaluate the children’s dietary habits and correlate them with the Bifidobacterium and metabolomic profiles. We found that B. longum subs. infantis and B. breve were higher in individuals with obesity, while B. bifidum and B. longum subs. longum were lower compared to healthy individuals. In individuals with T1D, alterations were found at the metabolic level, with an overall increase in the level of the most measured metabolites. The high taxonomic resolution of the Bifidobacterium test used meant strong correlations between the concentrations of valine and isoleucine, and the relative abundance of some Bifidobacterium species such as B. longum subs. infantis, B. breve, and B. bifidum could be observed.
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- 2024
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110. The Fate of RPE Cells Following hESC-RPE Patch Transplantation in Haemorrhagic Wet AMD: Pigmentation, Extension of Pigmentation, Thickness of Transplant, Assessment for Proliferation and Visual Function—A 5 Year-Follow Up
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Lyndon da Cruz, Taha Soomro, Odysseas Georgiadis, Britta Nommiste, Mandeep S. Sagoo, and Peter Coffey
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retinal pigment epithelium ,neovascular age-related macular degeneration ,submacular haemorrhage ,stem cell therapy ,human embryonic stem cells ,Medicine (General) ,R5-920 - Abstract
(1) Background: We reviewed a stem cell-derived therapeutic strategy for advanced neovascular age-related macular degeneration (nAMD) using a human embryonic stem cell-derived retinal pigment epithelium (hESC-RPE) monolayer delivered on a coated, synthetic basement membrane (BM)—the patch—and assessed the presence and distribution of hESC-RPE over 5 years following transplantation, as well as functional outcomes. (2) Methods: Two subjects with acute vision loss due to sub-macular haemorrhage in advanced nAMD received the hESC-RPE patch. Systematic immunosuppression was used peri-operatively followed by local depot immunosuppression. The subjects were monitored for five years with observation of RPE patch pigmentation, extension beyond the patch boundary into surrounding retina, thickness of hESC-RPE and synthetic BM and review for migration and proliferation of hESC-RPE. Visual function was also assessed. (3) Results: The two study participants showed clear RPE characteristics of the patch, preservation of some retinal ultrastructure with signs of remodelling, fibrosis and thinning on optical coherence tomography over the 5-year period. For both participants, there was evidence of pigment extension beyond the patch continuing until 12 months post-operatively, which stabilised and was preserved until 5 years post-operatively. Measurement of hESC-RPE and BM thickness over time for both cases were consistent with predefined histological measurements of these two layers. There was no evidence of distant RPE migration or proliferation in either case beyond the monolayer. Sustained visual acuity improvement was apparent for 2 years in both subjects, with one subject maintaining the improvement for 5 years. Both subjects demonstrated initial improvement in fixation and microperimetry compared to baseline, at year 1, although only one maintained this at 4 years post-intervention. (4) Conclusions: hESC-RPE patches show evidence of continued pigmentation, with extension, to cover bare host basement membrane for up to 5 years post-implantation. There is evidence that this represents functional RPE on the patch and at the patch border where host RPE is absent. The measurements for thickness of hESC-RPE and BM suggest persistence of both layers at 5 years. No safety concerns were raised for the hypothetical risk of RPE migration, proliferation or tumour formation. Visual function also showed sustained improvement for 2 years in one subject and 5 years in the other subject.
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- 2024
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111. Multi-Sensor Image and Range-Based Techniques for the Geometric Documentation and the Photorealistic 3D Modeling of Complex Architectural Monuments
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Alexandra Tsiachta, Panagiotis Argyrou, Ioannis Tsougas, Maria Kladou, Panagiotis Ravanidis, Dimitris Kaimaris, Charalampos Georgiadis, Olga Georgoula, and Petros Patias
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geometric documentation ,3D modeling ,UAV ,photogrammetry ,terrestrial photogrammetry ,laser scanning ,Chemical technology ,TP1-1185 - Abstract
The selection of the optimal methodology for the 3D geometric documentation of cultural heritage is a subject of high concern in contemporary scientific research. As a matter of fact, it requires a multi-source data acquisition process and the fusion of datasets from different sensors. This paper aims to demonstrate the workflow for the proper implementation and integration of geodetic, photogrammetric and laser scanning techniques so that high-quality photorealistic 3D models and other documentation products can be generated for a complicated, large-dimensional architectural monument and its surroundings. As a case study, we present the monitoring of the Mehmet Bey Mosque, which is a landmark in the city of Serres and a significant remaining sample of the Ottoman architecture in Greece. The surveying campaign was conducted in the context of the 2022–2023 annual workshop of the Interdepartmental Program of Postgraduate Studies “Protection Conservation and Restoration of Cultural Monuments” of the Aristotle University of Thessaloniki, and it served as a geometric background for interdisciplinary cooperation and decision-making on the monument restoration process. The results of our study encourage the fusion of terrestrial laser scanning and photogrammetric datasets for the 3D modeling of the mosque, as they supplement each other as regards geometry and texture.
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- 2024
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112. Author Correction: scCircle-seq unveils the diversity and complexity of extrachromosomal circular DNAs in single cells
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Jinxin Phaedo Chen, Constantin Diekmann, Honggui Wu, Chong Chen, Giulia Della Chiara, Enrico Berrino, Konstantinos L. Georgiadis, Britta A. M. Bouwman, Mohit Virdi, Luuk Harbers, Sara Erika Bellomo, Caterina Marchiò, Magda Bienko, and Nicola Crosetto
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Science - Published
- 2024
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113. Abstract 076: 2023 Fusarium Meningitis Outbreak: Neuroendovascular Outcomes and Observations of the Angioinvasive Disease from South Texas
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Kaiser O Sadiq, Sohum K Desai, Yazan D Abualnadi, Zorain M Khalil, Samantha Miller, Vijay Ravindra, Wondwossen G Tekle, Alexandros E Georgiadis, and Ameer E Hassan
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Neurology. Diseases of the nervous system ,RC346-429 ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Introduction The Centers for Disease Control and Prevention (CDC) issued a health advisory in response to an outbreak of Fusarium meningitis from exposure to spinal anesthesia for cosmetic surgery performed in Mexico between Jan 1 to May 13, 2023. This paper outlines the neuroendovascular and neurosurgical observations and management of this outbreak at our Comprehensive Stroke Center with a focus on angio‐invasive disease. Methods A retrospective chart review was performed for fungal meningitis patients that presented between April and July 2023. Results There were a total of 12 patients who were found to have fungal meningitis, 11 of whom were included in the final analysis with angio‐invasive Fusarium solani. The mean age was 31.7 ± 7.15. 92% of patients were female. CT and MRI were initially normal in two‐thirds of patients. No cases demonstrated positive growth on fungal cultures. Only (1→3)‐β‐D‐Glucan assays were positive in all patients who were tested. After several patients in this series developed subarachnoid hemorrhage from a ruptured mycotic aneurysm, we proceeded to institute weekly cerebral angiography protocol. This detected moderate to severe vasospasm in 75%, and aneurysms in 58%, with the most common site being the basilar artery. The aneurysms were seen exclusively in the posterior circulation. The average size of aneurysms when first detected was 5.0 ± 3.8 mm. Patients with brain aneurysms were treated with flow diversion in 57% of cases, primary coiling was performed in 14%, and the remaining expired prior to treatment. 14% in our series actually developed another episode of subarachnoid hemorrhage after treatment from a new angiographically confirmed aneurysm. All patients who presented with subarachnoid hemorrhage from mycotic aneurysms have passed or withdrawn care. With regard to vasospasm treatment, 80% had treatment with intra‐arterial verapamil and 40% underwent mechanical angioplasty. We did not perform balloon angioplasty in any case due to concern for rupture of the weakened compromised vessel walls. Finally with regard to cerebrospinal fluid (CSF) diversion; 67% underwent ventriculostomy, and a minority were converted to ventriculoperitoneal shunts. All but one patient received dual antifungal therapy with Amphotericin B and Voriconazole, and 42% were started on every other day intrathecal Amphotericin B. Conclusion We have found that in patients with fusarium meningitis that weekly angiographic surveillance for aneurysms and vasospasm should be performed. Conventional angiography is preferred to computed tomography angiography due to the smaller size of aneurysms. Aneurysms should be primarily coiled prior before flow diversion is attempted, and vasospastic vessels may be mechanically dilated in the setting of vessel wall necrosis.
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- 2023
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114. Abstract 248: Structural Analysis of Aspiration Catheters and Procedural Outcomes: An Analysis of the SVIN Registry
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Jaydevsinh N. Dolia, Mahmoud H. Mohammaden, Mohamed A. Tarek, Mateus D. Monteiro, Jonathan A. Grossberg, Aqueel H. Pabaney, Michael V. Frankel, Dinesh E. Jillella, Ameer V. Hassan, Wondwossen E. G. Tekle, Alexandros G. Georgiadis, Hamzah Saei, Santiago Ortega Gutierrez, Juan Vivanco‐Suarez, Milagros Galecio‐Castillo, Aaron Rodriguez‐Calienes, Shahram Majidi, Johanna Fifi, Stavros Matsoukas, James Siegler, Mary Penckofer, Ankit Rana, Sunil Sheth, Sergio Salazar Maroni, Thanh Nguyen, Mohamad Abdalkader, Italo Linfante, Guilherme Dabus, Brijesh Mehta, Joy Sessa, Mouhammad Jumaa, Rebecca Sugg, Guillermo Linares, Alhamza Al‐Bayati, David Libeskind, Raul Noguiera, and Diogo Haussen
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Neurology. Diseases of the nervous system ,RC346-429 ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Introduction Rapid expansion of mechanical thrombectomy and swift manufacturing development has translated into significant evolution of large bore catheter technology. The objective of this study was to evaluate the association among diverse structural components of large bore aspiration catheters on procedural performance. Methods Retrospective analysis of a prospectively maintained mechanical thrombectomy consortium (SVIN Registry) treated with stand‐alone contact aspiration for the first pass in the MCA M1 or intracranial ICA occlusions from 2012‐2021. Catheters were stratified based on construction materials, tip technology, catheter sizing, and catheter lining. Factors associated with first pass effect (FPE ‐ first‐pass eTICI2c‐3 reperfusion) as well as speed of clot engagement were analyzed. Results We identified 983 patients with proximal occlusion and aspiration as the first pass technique. FPE was observed in 34% and associated with age (OR:1.016;95%CI:1.006‐1.027), cardioembolic stroke etiology (OR:1.685;95%CI:1.77 ‐2.41), MCA M1(OR:2.737;95%CI:1.091 ‐1.867), non‐general anesthesia (OR:0.546;95%CI:0.389 ‐0.767), as well as with 0.070” (OR:2.038;95%CI:1.099 ‐3.779) and 0.088” (OR:3.899;95%CI:1.582 ‐9.606) distal catheter inner diameter in the adjusted analysis. Median time from arterial access to clot contact was 17 minutes with faster times observed in younger patients (OR:0.986;95%CI:0.975 ‐0.996) as well as with the use of aspiration catheters with shorter length of distal outer hydrophilic coating (18‐30cm) on multivariable regression (OR:0.303; 95%CI:0.113‐0.816). Conclusion Larger aspiration catheter distal inner diameter was associated with higher rates of FPE. Aspiration catheters with reduced distal tip hydrophilic coating were associated with faster arterial access to clot contact time.
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- 2023
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115. Guidance on protocol development for EFSA generic scientific assessments
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EFSA Scientific Committee (SC), Simon More, Vasileios Bampidis, Diane Benford, Claude Bragard, Antonio Hernández‐Jerez, Susanne Hougaard Bennekou, Konstantinos Panagiotis Koutsoumanis, Claude Lambré, Kyriaki Machera, Ewen Mullins, Søren Saxmose Nielsen, Josef Schlatter, Dieter Schrenk, Dominique Turck, Maged Younes, Andrew Kraft, Hanspeter Naegeli, Katya Tsaioun, Elisa Aiassa, Davide Arcella, Fulvio Barizzone, Maeve Cushen, Marios Georgiadis, Andrea Gervelmeyer, Anna Lanzoni, Paolo Lenzi, Federica Lodi, Laura Martino, Winy Messens, Luisa Ramos Bordajandi, Valentina Rizzi, Giuseppe Stancanelli, Špela Supej, and Thorhallur Ingi Halldorsson
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APRIO ,generic scientific assessments ,guidance ,methods ,PECO ,PICO ,Nutrition. Foods and food supply ,TX341-641 ,Chemical technology ,TP1-1185 - Abstract
Abstract EFSA Strategy 2027 outlines the need for fit‐for‐purpose protocols for EFSA generic scientific assessments to aid in delivering trustworthy scientific advice. This EFSA Scientific Committee guidance document helps address this need by providing a harmonised and flexible framework for developing protocols for EFSA generic assessments. The guidance replaces the ‘Draft framework for protocol development for EFSA's scientific assessments’ published in 2020. The two main steps in protocol development are described. The first is problem formulation, which illustrates the objectives of the assessment. Here a new approach to translating the mandated Terms of Reference into scientifically answerable assessment questions and sub‐questions is proposed: the ‘APRIO' paradigm (Agent, Pathway, Receptor, Intervention and Output). Owing to its cross‐cutting nature, this paradigm is considered adaptable and broadly applicable within and across the various EFSA domains and, if applied using the definitions given in this guidance, is expected to help harmonise the problem formulation process and outputs and foster consistency in protocol development. APRIO may also overcome the difficulty of implementing some existing frameworks across the multiple EFSA disciplines, e.g. the PICO/PECO approach (Population, Intervention/Exposure, Comparator, Outcome). Therefore, although not mandatory, APRIO is recommended. The second step in protocol development is the specification of the evidence needs and the methods that will be applied for answering the assessment questions and sub‐questions, including uncertainty analysis. Five possible approaches to answering individual (sub‐)questions are outlined: using evidence from scientific literature and study reports; using data from databases other than bibliographic; using expert judgement informally collected or elicited via semi‐formal or formal expert knowledge elicitation processes; using mathematical/statistical models; and – not covered in this guidance – generating empirical evidence ex novo. The guidance is complemented by a standalone ‘template’ for EFSA protocols that guides the users step by step through the process of planning an EFSA scientific assessment.
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- 2023
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116. Incorporating personal narratives in positive psychology interventions to manage chronic pain
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Emmanouil Georgiadis and Mark I. Johnson
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personal narrative ,chronic pain ,positive psychology ,agency ,healthcare ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
In this perspective paper, we argue for incorporating personal narratives in positive psychology interventions for chronic pain. Narratives refer to the telling and retelling of events. Narratives detail accounts of events and provide rich, in-depth information on human interactions, relationships, and perspectives. As such, narratives have been used to understand people’s experiences with pain and pain coping mechanisms—as well as to facilitate therapeutic outcomes. Furthermore, narrative research has shown that narration can help restore and promote relief, calm, hope, self-awareness, and self-understanding in chronic pain sufferers. Positive psychology interventions have been successful in improving the lives of people living with chronic pain, but these psychology interventions do not typically incorporate personal narratives. Still, narrative, and positive psychology scholarship foci overlap, as both aim to enhance people’s quality of life, happiness, and well-being, and to promote the understanding of psychosocial strengths and resources. In this article, we provide a rationale for incorporating personal narratives as an agentic form of positive psychology intervention. To that aim, we outline areas of convergence between positive psychology and narrative research and show how combining positive psychology exercises and narration can have additive benefits for pain sufferers. We also show how integrating narration in positive psychology intervention research can have advantages for healthcare research and policy.
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- 2023
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117. Acceleration of relativistic beams using laser-generated terahertz pulses
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Hibberd, Morgan T., Healy, Alisa L., Lake, Daniel S., Georgiadis, Vasileios, Smith, Elliott J. H., Finlay, Oliver J., Pacey, Thomas H., Jones, James K., Saveliev, Yuri, Walsh, David A., Snedden, Edward W., Appleby, Robert B., Burt, Graeme, Graham, Darren M., and Jamison, Steven P.
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Physics - Accelerator Physics - Abstract
Dielectric structures driven by laser-generated terahertz (THz) pulses may hold the key to overcoming the technological limitations of conventional particle accelerators and with recent experimental demonstrations of acceleration, compression and streaking of low-energy (sub-100 keV) electron beams, operation at relativistic beam energies is now essential to realize the full potential of THz-driven structures. We present the first THz-driven linear acceleration of relativistic 35 MeV electron bunches, exploiting the collinear excitation of a dielectric-lined waveguide driven by the longitudinal electric field component of polarization-tailored, narrowband THz pulses. Our results pave the way to unprecedented control over relativistic electron beams, providing bunch compression for ultrafast electron diffraction, energy manipulation for bunch diagnostics, and ultimately delivering high-field gradients for compact THz-driven particle acceleration., Comment: 8 pages, 4 figures
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- 2019
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118. Capacity and Algorithms for a Cognitive Network with Primary-Secondary User Cooperation
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Papadopoulos, Athanasios, Chatzidiamantis, Nestor D., and Georgiadis, Leonidas
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Computer Science - Information Theory ,Electrical Engineering and Systems Science - Signal Processing - Abstract
In this work, we examine cognitive radio networks, where secondary users may act as relays for messages sent by the primary user, hence offering performance improvement of primary transmissions, while at the same time obtaining more transmission opportunities for their own data. In particular, assuming the broadcast packet erasure model with feedback, we investigate the capacity of the fundamental cooperative cognitive radio network which consists of one primary and one secondary transmitter-receiver pairs. The primary transmitter is the owner of the channel and as such, we intend to keep its operations simple and to avoid increasing its storage requirements. Specifically, the primary transmitter does not receive data sent by the secondary transmitter and does not perform any coding operations. On the other hand, the secondary transmitter can overhear primary transmissions and is allowed to perform any coding operations. We develop an outer bound to the capacity of the fundamental cooperative cognitive radio network under consideration. Then, we propose a coding-scheduling algorithm suitable for this type of networks, which involves only XOR network coding operations. The complexity of the scheduling decisions of the proposed algorithm depends on the channel statistical parameters and three cases, depending on the relations between channel erasure probabilities, are distinguished. For the first two cases the rate region of the proposed algorithm coincides with the developed capacity outer bound, hence the algorithm is capacity achieving. For the third case, the rate region of the proposed algorithm is not identical to the outer bound; however, numerical results show that it is fairly close to the derived outer bound for a wide range of the statistical parameters of the system.
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- 2019
119. Lattice Boltzmann method for simulation of diffusion magnetic resonance imaging physics in multiphase tissue models
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Naughton, Noel M., Tennyson, Caroline G., and Georgiadis, John G.
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Physics - Medical Physics ,Computer Science - Computational Engineering, Finance, and Science ,Physics - Computational Physics ,Quantitative Biology - Quantitative Methods - Abstract
We report an implementation of the lattice Boltzmann method (LBM) to integrate the Bloch-Torrey equation, which describes the evolution of the transverse magnetization vector and the fate of the signal of diffusion magnetic resonance imaging (dMRI). Motivated by the need to interpret dMRI experiments in biological tissues, and to offset the small time-step limitation of classical LBM, a hybrid LBM scheme is introduced and implemented to solve the Bloch-Torrey equation. A membrane boundary condition is presented which is able to accurately represent the effects of thin curvilinear membranes typically found in biological tissues. As implemented, the hybrid LBM scheme accommodates piece-wise uniform transport, dMRI parameters, periodic and mirroring outer boundary conditions, and finite membrane permeabilities on non-boundary-conforming inner boundaries. By comparing with analytical solutions of limiting cases, we demonstrate that the hybrid LBM scheme is more accurate than the classical LBM scheme. The proposed explicit LBM scheme maintains second-order spatial accuracy, stability, and first-order temporal accuracy for a wide range of parameters. The parallel implementation of the hybrid LBM code in a multi-CPU computer system, as well as on GPUs, is straightforward and efficient. Along with offering certain advantages over finite element or Monte Carlo schemes, the proposed hybrid LBM constitutes a flexible scheme that can by easily adapted to model more complex interfacial conditions and physics in heterogeneous multiphase tissue models and to accommodate sophisticated dMRI sequences.
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- 2019
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120. Minimax Density Estimation on Sobolev Spaces With Dominating Mixed Smoothness
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Cleanthous, Galatia, Georgiadis, Athanasios G., and Porcu, Emilio
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Mathematics - Statistics Theory ,Mathematics - Probability ,62G07 - Abstract
We study minimax density estimation on the product space $\mathbb{R}^{d_1}\times\mathbb{R}^{d_2}$. We consider $L^p$-risk for probability density functions defined over regularity spaces that allow for different level of smoothness in each of the variables. Precisely, we study probabilities on Sobolev spaces with dominating mixed-smoothness. We provide the rate of convergence that is optimal even for the classical Sobolev spaces., Comment: 29 pages, 2 figures
- Published
- 2019
121. Global Collaboration through Local Interaction in Competitive Learning
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Siddiqui, Abbas and Georgiadis, Dionysios
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Computer Science - Machine Learning ,Computer Science - Neural and Evolutionary Computing ,Statistics - Machine Learning - Abstract
Feature maps, that preserve the global topology of arbitrary datasets, can be formed by self-organizing competing agents. So far, it has been presumed that global interaction of agents is necessary for this process. We establish that this is not the case, and that global topology can be uncovered through strictly local interactions. Enforcing uniformity of map quality across all agents, results in an algorithm that is able to consistently uncover the global topology of diversely challenging datasets.The applicability and scalability of this approach is further tested on a large point cloud dataset, revealing a linear relation between map training time and size. The presented work not only reduces algorithmic complexity but also constitutes first step towards a distributed self organizing map., Comment: The behavior via simulation can be viewed at: https://www.youtube.com/watch?v=lTxlVHXGO2Q
- Published
- 2019
122. Worldwide Organization of Neurocritical Care: Results from the PRINCE Study Part 1.
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Suarez, Jose I, Martin, Renee H, Bauza, Colleen, Georgiadis, Alexandros, Venkatasubba Rao, Chethan P, Calvillo, Eusebia, Hemphill, J Claude, Sung, Gene, Oddo, Mauro, Taccone, Fabio Silvio, LeRoux, Peter D, and PRINCE Study Investigators
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PRINCE Study Investigators ,Humans ,Central Nervous System Diseases ,Clinical Protocols ,Transportation of Patients ,Critical Care ,Respiratory Therapy ,Tomography Scanners ,X-Ray Computed ,Neurology ,Neurosurgery ,Telemedicine ,Fellowships and Scholarships ,Resource Allocation ,Internationality ,Internship and Residency ,Health Personnel ,Pharmacists ,Physicians ,Academic Medical Centers ,Intensive Care Units ,Delivery of Health Care ,North America ,Asia ,Middle East ,Europe ,Oceania ,Practice Guidelines as Topic ,Latin America ,Personnel Management ,Critical care ,Neurocritical care ,Observational study ,Outcomes ,Prospective ,Tomography Scanners ,X-Ray Computed ,Clinical Sciences ,Neurosciences ,Neurology & Neurosurgery - Abstract
IntroductionNeurocritical care focuses on the care of critically ill patients with an acute neurologic disorder and has grown significantly in the past few years. However, there is a lack of data that describe the scope of practice of neurointensivists and epidemiological data on the types of patients and treatments used in neurocritical care units worldwide. To address these issues, we designed a multicenter, international, point-prevalence, cross-sectional, prospective, observational, non-interventional study in the setting of neurocritical care (PRINCE Study).MethodsIn this manuscript, we analyzed data from the initial phase of the study that included registration, hospital, and intensive care unit (ICU) organizations. We present here descriptive statistics to summarize data from the registration case report form. We performed the Kruskal-Wallis test followed by the Dunn procedure to test for differences in practices among world regions.ResultsWe analyzed information submitted by 257 participating sites from 47 countries. The majority of those sites, 119 (46.3%), were in North America, 44 (17.2%) in Europe, 34 (13.3%) in Asia, 9 (3.5%) in the Middle East, 34 (13.3%) in Latin America, and 14 (5.5%) in Oceania. Most ICUs are from academic institutions (73.4%) located in large urban centers (44% > 1 million inhabitants). We found significant differences in hospital and ICU organization, resource allocation, and use of patient management protocols. The highest nursing/patient ratio was in Oceania (100% 1:1). Dedicated Advanced Practiced Providers are mostly present in North America (73.7%) and are uncommon in Oceania (7.7%) and the Middle East (0%). The presence of dedicated respiratory therapist is common in North America (85%), Middle East (85%), and Latin America (84%) but less common in Europe (26%) and Oceania (7.7%). The presence of dedicated pharmacist is highest in North America (89%) and Oceania (85%) and least common in Latin America (38%). The majority of respondents reported having a dedicated neuro-ICU (67% overall; highest in North America: 82%; and lowest in Oceania: 14%).ConclusionThe PRINCE Study results suggest that there is significant variability in the delivery of neurocritical care. The study also shows it is feasible to undertake international collaborations to gather global data about the practice of neurocritical care.
- Published
- 2020
123. Accelerating Convolutional Neural Networks via Activation Map Compression
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Georgiadis, Georgios
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Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Artificial Intelligence ,Computer Science - Machine Learning - Abstract
The deep learning revolution brought us an extensive array of neural network architectures that achieve state-of-the-art performance in a wide variety of Computer Vision tasks including among others, classification, detection and segmentation. In parallel, we have also been observing an unprecedented demand in computational and memory requirements, rendering the efficient use of neural networks in low-powered devices virtually unattainable. Towards this end, we propose a three-stage compression and acceleration pipeline that sparsifies, quantizes and entropy encodes activation maps of Convolutional Neural Networks. Sparsification increases the representational power of activation maps leading to both acceleration of inference and higher model accuracy. Inception-V3 and MobileNet-V1 can be accelerated by as much as $1.6\times$ with an increase in accuracy of $0.38\%$ and $0.54\%$ on the ImageNet and CIFAR-10 datasets respectively. Quantizing and entropy coding the sparser activation maps lead to higher compression over the baseline, reducing the memory cost of the network execution. Inception-V3 and MobileNet-V1 activation maps, quantized to $16$ bits, are compressed by as much as $6\times$ with an increase in accuracy of $0.36\%$ and $0.55\%$ respectively.
- Published
- 2018
124. Pattern phase diagram of spiking neurons on spatial networks
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Georgiadis, Dionysios and Sornette, Didier
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Quantitative Biology - Neurons and Cognition ,Nonlinear Sciences - Adaptation and Self-Organizing Systems - Abstract
We study an abstracted model of neuronal activity via numerical simulation, and report spatiotemporal pattern formation and critical like dynamics. A population of pulse coupled, discretised, relaxation oscillators is simulated over networks with varying edge density and spatial embedded ness. For intermediate edge density and sufficiently strong spatial embeddedness, we observe a novel spatiotemporal pattern in the field of oscillator phases, visually resembling the surface of a frothing liquid. Increasing the edge density results in critical dynamics, with the distribution of neuronal avalanche sizes following a power law with exponent one. Further increase of the edge density results in metastable behaviour between pattern formation and synchronisation, before transitioning the system entirely into synchrony.
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- 2018
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125. Metamasius hemipterus (Linnaeus, 1758) (Coleoptera, Curculionidae, Dryophthorinae) on a hand of bananas in Greece
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Jakovos Demetriou, Evangelos Koutsoukos, Christos Kazilas, Konstantinos Kalaentzis, and Christos Georgiadis
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Alien species ,biological invasions ,citizen scien ,Biology (General) ,QH301-705.5 - Abstract
A dead individual of Metamasius hemipterus (Linnaeus, 1758) was collected by a citizen scientist in Athens, Greece from a hand of imported bananas. The equatorial origin of the fruit as well as the extensive growth of a fungus on the specimen, both suggest an unintentional introduction as a contaminant. Nevertheless, this record highlights the valu-able contribution of citizen scientists in the study of alien species. Although the species is not presently considered as established in the country, citizen-science initiatives in order to raise awareness and monitor its presence are ongoing.
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- 2023
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126. RF Energy Harvesting and Wireless Power Transfer for Energy Autonomous Wireless Devices and RFIDs
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Kyriaki Niotaki, Nuno Borges Carvalho, Apostolos Georgiadis, Xiaoqiang Gu, Simon Hemour, Ke Wu, Diogo Matos, Daniel Belo, Ricardo Pereira, Ricardo Figueiredo, Henrique Chaves, Bernardo Mendes, Ricardo Correia, Arnaldo Oliveira, Valentina Palazzi, Federico Alimenti, Paolo Mezzanotte, Luca Roselli, Francesca Benassi, Alessandra Costanzo, Diego Masotti, Giacomo Paolini, Aline Eid, Jimmy Hester, Manos M. Tentzeris, and Naoki Shinohara
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Backscatter ,wireless communications ,electromagnetic harvesting ,RF energy harvesting ,IoT ,wireless power transfer ,Telecommunication ,TK5101-6720 ,Electric apparatus and materials. Electric circuits. Electric networks ,TK452-454.4 - Abstract
Radio frequency (RF) energy harvesting and wireless power transmission (WPT) technologies —both near-field and far-field—have attracted significant interest for wireless applications and RFID systems. We already utilize near-field WPT products in our life and it is expected that RF EH and far-field WPT systems can drive the future low-power wireless systems. In this article, we initially present a brief historical overview of these technologies. The main technical challenges of rectennas and WPT transmitters are discussed. Furthermore, this paper presents the recent advances on the development of these technologies, including the possibility of powering RFID systems through the millimeter wave power from 5G networks, the trends in flexible rectennas design and the technological developments on the simultaneous wireless information and power transfer (SWIPT).
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- 2023
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127. Thermal Fracture of Functionally Graded Coatings with Systems of Cracks: Application of a Model Based on the Rule of Mixtures
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Vera Petrova, Siegfried Schmauder, and Alexandros Georgiadis
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thermal fracture ,system of cracks ,functionally graded coatings ,fracture toughness ,rule of mixtures ,Technology ,Chemical technology ,TP1-1185 - Abstract
This paper is devoted to the problem of the thermal fracture of a functionally graded coating (FGC) on a homogeneous substrate (H), i.e., FGC/H structures. The FGC/H structure was subjected to thermo-mechanical loadings. Systems of interacting cracks were located in the FGC. Typical cracks in such structures include edge cracks, internal cracks, and edge/internal cracks. The material properties and fracture toughness of the FGC were modeled by formulas based on the rule of mixtures. The FGC comprised two constituents, a ceramic on the top and a metal as a homogeneous substrate, with their volume fractions determined by a power law function with the power coefficient λ as the gradation parameter for the FGC. For this study, the method of singular integral equations was used, and the integral equations were solved numerically by the mechanical quadrature method based on the Chebyshev polynomials. Attention was mainly paid to the determination of critical loads and energy release rates for the systems of interacting cracks in the FGCs in order to find ways to increase the fracture resistance of FGC/H structures. As an illustrative example, a system of three edge cracks in the FGC was considered. The crack shielding effect was demonstrated for this system of cracks. Additionally, it was shown that the gradation parameter λ had a great effect on the fracture characteristics. Thus, the proposed model provided a sound basis for the optimization of FGCs in order to improve the fracture resistance of FGC/H structures.
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- 2023
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128. Gamification Design Patterns for User Engagement
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Serafeim A. Triantafyllou and Christos K. GEORGIADIS Georgiadis
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gamification ,design patterns ,software design ,game design ,Special aspects of education ,LC8-6691 - Abstract
The rapid development of technology in today’s times make business’ survival a rather complex task. It is therefore necessary for the specialized organization and administration of each company to differentiate and strengthen its competitive advantages. Gamification is an established practice in many business domains and can enforce employees to engage in business processes and change aspects of their behavior. Even though numerous gamification patterns that are described in literature have been used so far by businesses to various working environments, the outcomes were not the best possible that we would expect in terms of their right utilization to business non-game contexts. Thus, there is need for concise gamification patterns that can offer right guidance to game designers in business. Gamification design patterns can provide a distilled knowledge of techniques of how to design object-oriented software. This paper aims to address this gap in existing literature by describing new gamification design patterns, classifying them according to specific criteria and providing new information to this research domain. Our study is a descriptive literature review and is based on review of previous works. This descriptive literature review tries to give a better understanding by proposing new gamification design patterns in the continuously evolving research domain of gamification design patterns.
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- 2022
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129. Indirect all-quadrilateral meshing based on bipartite topological labeling
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Georgiadis, Christos, Reberol, Maxence, and Remacle, Jean-François
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- 2022
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130. Statistical Analysis and Review of Fire Incidents Data of Greece, with Special Focus on Residential Cases 2000–2019
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Georgiadis-Filikas, Konstantinos, Bakas, Iasonas, and Kontoleon, Karolos
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- 2022
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131. Dependence on resources and cooperation networks of the National Olympic Academies
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Paraskevi Salepi, Konstantinos Georgiadis, Athanasios Kriemadis, and Antonios Travlos
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olympism ,strategy ,governance ,inter-organisation ,education ,operation ,Sports medicine ,RC1200-1245 - Abstract
This study seeks to identify the strategic and operational factors necessary for the effective operation of the International Olympic Academy (IOA), and of the National Olympic Academies (NOAs). It applies Resource Dependence Theory (RDP) and Inter-organizational Relationships Theory (IOR) to the institutional environment of the NOAs. A set of exploratory semi-structured interviews were conducted with key stakeholders from the International Olympic Committee (IOC), IOA, NOAs and Academics. A thematic analysis of the interview data provided themes to be incorporated into a questionnaire conducted with NOA directors and NOC officials focusing on relationships of the NOAs with other organisations and the implications for their autonomy. The nature of the field of NOA activity and its environment, is such that, for many NOAs, it is beset by an imbalance of power. This is reflected in the resource dependency of many NOAs on, in particular, NOCs and ultimately the IOC for legitimacy, human, financial and physical resources. The paper highlights a number of ways in which these relationships might be modified for the benefit of all the organisations involved.
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- 2022
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132. RNeuMark: A Riemannian EEG Analysis Framework for Neuromarketing
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Kostas Georgiadis, Fotis P. Kalaganis, Vangelis P. Oikonomou, Spiros Nikolopoulos, Nikos A. Laskaris, and Ioannis Kompatsiaris
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Neuromarketing ,Riemannian Geometry ,Covariance Matrices ,Electroencephalography ,BCIs ,Computer applications to medicine. Medical informatics ,R858-859.7 ,Computer software ,QA76.75-76.765 - Abstract
Abstract Neuromarketing exploits neuroimaging techniques so as to reinforce the predictive power of conventional marketing tools, like questionnaires and focus groups. Electroencephalography (EEG) is the most commonly encountered neuroimaging technique due to its non-invasiveness, low-cost, and its very recent embedding in wearable devices. The transcription of brainwave patterns to consumer attitude is supported by various signal descriptors, while the quest for profitable novel ways is still an open research question. Here, we suggest the use of sample covariance matrices as alternative descriptors, that encapsulate the coordinated neural activity from distinct brain areas, and the adoption of Riemannian geometry for their handling. We first establish the suitability of Riemannian approach for neuromarketing-related problems and then suggest a relevant decoding scheme for predicting consumers’ choices (e.g., willing to buy or not a specific product). Since the decision-making process involves the concurrent interaction of various cognitive processes and consequently of distinct brain rhythms, the proposed decoder takes the form of an ensemble classifier that builds upon a multi-view perspective, with each view dedicated to a specific frequency band. Adopting a standard machine learning procedure, and using a set of trials (training data) in conjunction with the associated behavior labels (“buy”/ “not buy”), we train a battery of classifiers accordingly. Each classifier is designed to operate in the space recovered from the inter-trial distances of SCMs and to cast a rhythm-depended decision that is eventually combined with the predictions of the rest ones. The demonstration and evaluation of the proposed approach are performed in 2 neuromarketing-related datasets of different nature. The first is employed to showcase the potential of the suggested descriptor, while the second to showcase the decoder’s superiority against popular alternatives in the field.
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- 2022
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133. A New Drug Discovery Platform: Application to DNA Polymerase Eta and Apurinic/Apyrimidinic Endonuclease 1
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Debanu Das, Matthew A. J. Duncton, Taxiarchis M. Georgiadis, Patricia Pellicena, Jennifer Clark, Robert W. Sobol, Millie M. Georgiadis, John King-Underwood, David V. Jobes, Caleb Chang, Yang Gao, Ashley M. Deacon, and David M. Wilson
- Subjects
fragment-based drug discovery ,structure-based drug discovery ,X-ray crystallography ,cancer therapeutics ,DNA damage response ,polymerases ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
The ability to quickly discover reliable hits from screening and rapidly convert them into lead compounds, which can be verified in functional assays, is central to drug discovery. The expedited validation of novel targets and the identification of modulators to advance to preclinical studies can significantly increase drug development success. Our SaXPyTM (“SAR by X-ray Poses Quickly”) platform, which is applicable to any X-ray crystallography-enabled drug target, couples the established methods of protein X-ray crystallography and fragment-based drug discovery (FBDD) with advanced computational and medicinal chemistry to deliver small molecule modulators or targeted protein degradation ligands in a short timeframe. Our approach, especially for elusive or “undruggable” targets, allows for (i) hit generation; (ii) the mapping of protein–ligand interactions; (iii) the assessment of target ligandability; (iv) the discovery of novel and potential allosteric binding sites; and (v) hit-to-lead execution. These advances inform chemical tractability and downstream biology and generate novel intellectual property. We describe here the application of SaXPy in the discovery and development of DNA damage response inhibitors against DNA polymerase eta (Pol η or POLH) and apurinic/apyrimidinic endonuclease 1 (APE1 or APEX1). Notably, our SaXPy platform allowed us to solve the first crystal structures of these proteins bound to small molecules and to discover novel binding sites for each target.
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- 2023
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134. Understanding chronic pain in the ubiquitous community: the role of open data
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Federico Monaco, Emmanouil Georgiadis, Kakia Chatsiou, and Antonio Bonacaro
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chronic pain ,non-biomedical approach ,open data ,artificial intelligence ,patient empowerment ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
The combined use of social media, open data, and Artificial Intelligence has the potential to support practitioners and empower patients/citizens living with persistent pain, both as local and online communities. Given the wide availability of digital technology today, both practitioners and interested individuals can be connected with virtual communities and can support each other from the comfort of their homes. Digital means may represent new avenues for exploring the complexity of the pain experience. Online interactions of patients, data on effective treatments, and data collected by wearable devices may represent an incredible source of psychological, sociological, and physiological pain-related information. Digital means might provide several solutions that enhance inclusiveness and motivate patients to share personal experiences, limiting the sense of isolation in both rural and metropolitan areas. Building on the consensus of the usefulness of social media in enhancing the understanding of persistent pain and related subjective experiences via online communities and networks, we provide relevant scenarios where the effectiveness and efficiency of healthcare delivery might be improved by the adoption of the digital technologies mentioned above and repeated subsequently. The aim of this perspective paper is to explore the potential of open data, social media, and Artificial Intelligence in improving the prevention and management of persistent pain by adopting innovative non-biomedical approaches.
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- 2023
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135. The geographical dimension of income and consumption inequality
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Yannis Psycharis, Thomas Georgiadis, and Panagiotis Nikolopoulos
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Science (General) ,Q1-390 ,Social sciences (General) ,H1-99 - Abstract
This paper aims at examining interpersonal income and consumption inequality within the Attica Metropolitan Region, which includes Athens, the largest metropolis of Greece. It also aims to make comparisons between Attica and the rest of the country. The analysis is based on income and consumption microdata from Greek Household Budget Surveys (HBS) over the period 2008-2019, encapsulating the period from the commencement of the economic crisis until the year before the outset of the COVID-19 pandemic. Results indicate that income inequalities are systematically higher than consumption inequalities. From a spatial comparative perspective, the results show that the Attica Metropolitan Region exhibits a higher degree of income and consumption inequality relative to the rest of the country. Furthermore, the economic crisis increased income inequality in Athens and in the rest of the country, while consumption expenditure inequality increased in the Athens metropolitan area only. Finally, the distance between socio-economic groups, which stands as a measure of the degree of social polarization, increased during the economic crisis. However, this does not hold true for consumption inequality. Overall, the analysis demonstrates the sensitivity of inequality outcomes to the selection of the welfare indicator (income or consumption), as well as a number of noticeable differences in inequality outcomes between the Metropolitan region of Attica and the rest of the country. The paper unveils facets of inequality which necessitate the implementation of more people and place-targeted policies aimed at more inclusive and balanced welfare conditions in metropolitan regions and across the country.
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- 2023
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136. AAV-RPGR Gene Therapy Rescues Opsin Mislocalisation in a Human Retinal Organoid Model of RPGR-Associated X-Linked Retinitis Pigmentosa
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Paul E. Sladen, Arifa Naeem, Toyin Adefila-Ideozu, Tijmen Vermeule, Sophie L. Busson, Michel Michaelides, Stuart Naylor, Alexandria Forbes, Amelia Lane, and Anastasios Georgiadis
- Subjects
RPGR ,retinitis pigmentosa ,X-linked ,gene therapy ,adeno associated virus ,IPSC ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Variants within the Retinitis Pigmentosa GTPase regulator (RPGR) gene are the predominant cause of X-Linked Retinitis Pigmentosa (XLRP), a common and severe form of inherited retinal disease. XLRP is characterised by the progressive degeneration and loss of photoreceptors, leading to visual loss and, ultimately, bilateral blindness. Unfortunately, there are no effective approved treatments for RPGR-associated XLRP. We sought to investigate the efficacy of RPGRORF15 gene supplementation using a clinically relevant construct in human RPGR-deficient retinal organoids (ROs). Isogenic RPGR knockout (KO)-induced pluripotent stem cells (IPSCs) were generated using established CRISPR/Cas9 gene editing methods targeting RPGR. RPGR-KO and isogenic wild-type IPSCs were differentiated into ROs and utilised to test the adeno associated virus (AAV) RPGR (AAV-RPGR) clinical vector construct. The transduction of RPGR-KO ROs using AAV-RPGR successfully restored RPGR mRNA and protein expression and localisation to the photoreceptor connecting cilium in rod and cone photoreceptors. Vector-derived RPGR demonstrated equivalent levels of glutamylation to WT ROs. In addition, treatment with AAV-RPGR restored rhodopsin localisation within RPGR-KO ROs, reducing mislocalisation to the photoreceptor outer nuclear layer. These data provide mechanistic insights into RPGRORF15 gene supplementation functional potency in human photoreceptor cells and support the previously reported Phase I/II trial positive results using this vector construct in patients with RPGR-associated XLRP, which is currently being tested in a Phase III clinical trial.
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- 2024
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137. New method for assessing the repeatability of the measuring system for roughness measurements
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Engler Carsten, Georgiadis Anthimos, Lange Dirk, and Meier Nicolas
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gum ,uncertainty ,msa ,capability ,roughness ,new formula ,new method ,Technology - Abstract
The AIAG established the MSA, 4th Edition, as an international guideline to determine if the selected measurement system is capable and can be used for the intended purpose. The MSA guideline provides a practical basis for decision-making and is applied in both scientific and industrial contexts. In addition to the MSA, the Guide to the Expression of Uncertainty in Measurement (GUM) has standardized the determination of measurement uncertainties at an international level. This paper provides a practical example of using a surface comparator to demonstrate the limitations of the MSA for roughness parameters. Additionally, it presents a new method for assessing the capability of a measuring system for roughness measurements by considering the aspects from MSA and GUM. This work considers all information, distinguishing between existing and experimentally generated data. The experimental investigations for the application of the new method were carried out using a confocal laser scanning measuring microscope. The approach presents a new practical opportunity for both science and industry.
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- 2024
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138. Product (α1, α2)-modulation spaces
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Cleanthous, Galatia and Georgiadis, Athanasios G.
- Published
- 2022
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139. Parameterized Synthetic Image Data Set for Fisheye Lens
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Chen, Zhen and Georgiadis, Anthimos
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Computer Science - Computer Vision and Pattern Recognition - Abstract
Based on different projection geometry, a fisheye image can be presented as a parameterized non-rectilinear image. Deep neural networks(DNN) is one of the solutions to extract parameters for fisheye image feature description. However, a large number of images are required for training a reasonable prediction model for DNN. In this paper, we propose to extend the scale of the training dataset using parameterized synthetic images. It effectively boosts the diversity of images and avoids the data scale limitation. To simulate different viewing angles and distances, we adopt controllable parameterized projection processes on transformation. The reliability of the proposed method is proved by testing images captured by our fisheye camera. The synthetic dataset is the first dataset that is able to extend to a big scale labeled fisheye image dataset. It is accessible via: http://www2.leuphana.de/misl/fisheye-data-set/., Comment: 2018 5th International Conference on Information Science and Control Engineering
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- 2018
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140. SocialRobot: Towards a Personalized Elderly Care Mobile Robot
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Portugal, David, Santos, Luís, Trindade, Pedro, Christophorou, Christophoros, Andreou, Panayiotis, Georgiadis, Dimosthenis, Belk, Marios, Freire, João, Alvito, Paulo, Samaras, George, Christodoulou, Eleni, and Dias, Jorge
- Subjects
Computer Science - Robotics ,Computer Science - Human-Computer Interaction - Abstract
SocialRobot is a collaborative European project, which focuses on providing a practical and interactive solution to improve the quality of life of elderly people. Having this in mind, a state of the art robotic mobile platform has been integrated with virtual social care technology to meet the elderly individual needs and requirements, following a human centered approach. In this short paper, we make an overview of SocialRobot, the developed architecture and the human-robot interactive scenarios being prepared and tested in the framework of the project for dissemination and exploitation purposes.
- Published
- 2018
141. A Combinatorial-Probabilistic Analysis of Bitcoin Attacks
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Georgiadis, Evangelos and Zeilberger, Doron
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Mathematics - Combinatorics ,Computer Science - Cryptography and Security - Abstract
Using Wilf-Zeilberger algorithmic proof theory, we continue pioneering work of Meni Rosenfeld (followed up by interesting work by Cyril Grunspan and Ricardo Perez-Marco) and study the probability and duration of successful bitcoin attacks, but using an equivalent, and much more congenial, formulation as a certain two-phase soccer match., Comment: 8 pages; Accompanied by a Maple package and outputs filed obtainable from http://sites.math.rutgers.edu/~zeilberg/mamarim/mamarimhtml/bitcoin.html (Added: proof provenance about the negative binomial distribution.)
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- 2018
142. Network Coding Techniques in Cooperative Cognitive Networks
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Papadopoulos, Athanasios, Chatzidiamantis, Nestor D., and Georgiadis, Leonidas
- Subjects
Electrical Engineering and Systems Science - Signal Processing - Abstract
In this paper, we investigate transmission techniques for a fundamental cooperative cognitive radio network, i.e., a radio system where a Secondary user may act as relay for messages sent by the Primary user, hence offering performance improvement of Primary user transmissions, while at the same time obtaining more transmission opportunities for its own transmissions. Specifically, we examine the possibility of improving the overall system performance by employing network coding techniques. The objective is to achieve this while affecting Primary user transmissions only positively, namely: 1) avoid network coding operations at the Primary transmitter in order avoid increase of its complexity and storage requirements, 2) keep the order of packets received by the Primary receiver the same as in the non cooperative case and 3) induce packet service times that are stochastically smaller than packet service times induced in the non-cooperative case. A network coding algorithm is investigated in terms of achieved throughput region and it is shown to enlarge Secondary user throughput as compared to the case where the Secondary transmitter acts as a simple relay, while leaving the Primary user stability region unaffected. A notable feature of this algorithm is that it operates without knowledge of channel and packet arrival rate statistics. We also investigate a second network coding algorithm which increases the throughput region of the system; however, the latter algorithm requires knowledge of channel and packet arrival rate statistics.
- Published
- 2018
143. Faster Algorithms for All-Pairs Bounded Min-Cuts
- Author
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Abboud, Amir, Georgiadis, Loukas, Italiano, Giuseppe F., Krauthgamer, Robert, Parotsidis, Nikos, Trabelsi, Ohad, Uznański, Przemysław, and Wolleb-Graf, Daniel
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Computer Science - Data Structures and Algorithms - Abstract
The All-Pairs Min-Cut problem (aka All-Pairs Max-Flow) asks to compute a minimum $s$-$t$ cut (or just its value) for all pairs of vertices $s,t$. We study this problem in directed graphs with unit edge/vertex capacities (corresponding to edge/vertex connectivity). Our focus is on the $k$-bounded case, where the algorithm has to find all pairs with min-cut value less than $k$, and report only those. The most basic case $k=1$ is the Transitive Closure (TC) problem, which can be solved in graphs with $n$ vertices and $m$ edges in time $O(mn)$ combinatorially, and in time $O(n^{\omega})$ where $\omega<2.38$ is the matrix-multiplication exponent. These time bounds are conjectured to be optimal. We present new algorithms and conditional lower bounds that advance the frontier for larger $k$, as follows: (i) A randomized algorithm for vertex capacities that runs in time $O((nk)^{\omega})$. (ii) Two deterministic algorithms for edge capacities (which is more general) that work in DAGs and further reports a minimum cut for each pair. The first algorithm is combinatorial (does not involve matrix multiplication) and runs in time $O(2^{O(k^2)}\cdot mn)$. The second algorithm can be faster on dense DAGs and runs in time $O((k\log n)^{4^k+o(k)} n^{\omega})$. (iii) The first super-cubic lower bound of $n^{\omega-1-o(1)} k^2$ time under the $4$-Clique conjecture, which holds even in the simplest case of DAGs with unit vertex capacities. It improves on the previous (SETH-based) lower bounds even in the unbounded setting $k=n$. For combinatorial algorithms, our reduction implies an $n^{2-o(1)} k^2$ conditional lower bound. Thus, we identify new settings where the complexity of the problem is (conditionally) higher than that of TC.
- Published
- 2018
144. Kernel and wavelet density estimators on manifolds and more general metric spaces
- Author
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Cleanthous, G., Georgiadis, A., Kerkyacharian, G., Petrushev, P., and Picard, D.
- Subjects
Mathematics - Probability ,Mathematics - Statistics Theory ,Primary 62G07, 58J35, Secondary 43A85, 42B35 - Abstract
We consider the problem of estimating the density of observations taking values in classical or nonclassical spaces such as manifolds and more general metric spaces. Our setting is quite general but also sufficiently rich in allowing the development of smooth functional calculus with well localized spectral kernels, Besov regularity spaces, and wavelet type systems. Kernel and both linear and nonlinear wavelet density estimators are introduced and studied. Convergence rates for these estimators are established, which are analogous to the existing results in the classical setting of real-valued variables.
- Published
- 2018
145. Atomic and molecular decomposition of homogeneous spaces of distributions associated to non-negative self-adjoint operators
- Author
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Georgiadis, Athanasios G., Kerkyacharian, Gerard, Kyriazis, George, and Petrushev, Pencho
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Mathematics - Classical Analysis and ODEs - Abstract
We deal with homogeneous Besov and Triebel-Lizorkin spaces in the setting of a doubling metric measure space in the presence of a non-negative self-adjoint operator whose heat kernel has Gaussian localization and the Markov property. The class of almost diagonal operators on the associated sequence spaces is developed and it is shown that this class is an algebra. The boundedness of almost diagonal operators is utilized for establishing smooth molecular and atomic decompositions for the above homogeneous Besov and Triebel-Lizorkin spaces. Spectral multipliers for these spaces are established as well.
- Published
- 2018
146. A multi-level collaborative filtering method that improves recommendations
- Author
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Polatidis, Nikolaos and Georgiadis, Christos K.
- Subjects
Computer Science - Information Retrieval - Abstract
Collaborative filtering is one of the most used approaches for providing recommendations in various online environments. Even though collaborative recommendation methods have been widely utilized due to their simplicity and ease of use, accuracy is still an issue. In this paper we propose a multi-level recommendation method with its main purpose being to assist users in decision making by providing recommendations of better quality. The proposed method can be applied in different online domains that use collaborative recommender systems, thus improving the overall user experience. The efficiency of the proposed method is shown by providing an extensive experimental evaluation using five real datasets and with comparisons to alternatives.
- Published
- 2018
- Full Text
- View/download PDF
147. The CTTC 5G end-to-end experimental platform: Integrating heterogeneous wireless/optical networks, distributed cloud, and IoT devices
- Author
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Muñóz, Raul, Mangues, Josep, Vilalta, Ricard, Verikoukis, Christos, Alonso-Zarate, Jesús, Bartzoudis, Nikolaos, Georgiadis, Apostolos, Payaró, Miquel, Pérez-Neira, Ana, Casellas, Ramon, Martínez, Ricardo, Núñez-Martínez, José, Requena-Esteso, Manuel, Pubill, David, Font-Bach, Oriol, Henarejos, Pol, Serra, Jordi, and Vazquez-Gallego, Francisco
- Subjects
Computer Science - Networking and Internet Architecture ,Computer Science - Information Theory - Abstract
The Internet of Things (IoT) will facilitate a wide variety of applications in different domains, such as smart cities, smart grids, industrial automation (Industry 4.0), smart driving, assistance of the elderly, and home automation. Billions of heterogeneous smart devices with different application requirements will be connected to the networks and will generate huge aggregated volumes of data that will be processed in distributed cloud infrastructures. On the other hand, there is also a general trend to deploy functions as software (SW) instances in cloud infrastructures [e.g., network function virtualization (NFV) or mobile edge computing (MEC)]. Thus, the next generation of mobile networks, the fifth-generation (5G), will need not only to develop new radio interfaces or waveforms to cope with the expected traffic growth but also to integrate heterogeneous networks from end to end (E2E) with distributed cloud resources to deliver E2E IoT and mobile services. This article presents the E2E 5G platform that is being developed by the Centre Tecnol\`ogic de Telecomunicacions de Catalunya (CTTC), the first known platform capable of reproducing such an ambitious scenario.
- Published
- 2018
- Full Text
- View/download PDF
148. Incremental Strong Connectivity and 2-Connectivity in Directed Graphs
- Author
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Georgiadis, Loukas, Italiano, Giuseppe F., and Parotsidis, Nikos
- Subjects
Computer Science - Data Structures and Algorithms - Abstract
In this paper, we present new incremental algorithms for maintaining data structures that represent all connectivity cuts of size one in directed graphs (digraphs), and the strongly connected components that result by the removal of each of those cuts. We give a conditional lower bound that provides evidence that our algorithms may be tight up to sub-polynomial factors. As an additional result, with our approach we can also maintain dynamically the $2$-vertex-connected components of a digraph during any sequence of edge insertions in a total of $O(mn)$ time. This matches the bounds for the incremental maintenance of the $2$-edge-connected components of a digraph., Comment: Accepted to the 13th Latin American Theoretical INformatics Symposium (LATIN 2018)
- Published
- 2018
149. Fourier Multipliers on Anisotropic Mixed-Norm Spaces of Distributions
- Author
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Cleanthous, Galatia, Georgiadis, Athanasios G., and Nielsen, Morten
- Subjects
Mathematics - Functional Analysis ,42B15, 42B25, 42B35, 46F99 - Abstract
A new general Hormander type condition involving anisotropies and mixed norms is introduced, and boundedness results for Fourier multi- pliers on anisotropic Besov and Triebel-Lizorkin spaces of distributions with mixed Lebesgue norms are obtained. As an application, the continuity of such operators is established on mixed Sobolev and Lebesgue spaces too. Some lifting properties and equivalent norms are obtained as well., Comment: Accepted for publication in Math. Scand
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- 2018
150. Towards the 1G of Mobile Power Network: RF, Signal and System Designs to Make Smart Objects Autonomous
- Author
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Clerckx, Bruno, Costanzo, Alessandra, Georgiadis, Apostolos, and Carvalho, Nuno Borges
- Subjects
Computer Science - Information Theory ,Electrical Engineering and Systems Science - Signal Processing - Abstract
This article reviews some recent promising approaches to make mobile power closer to reality. In contrast with articles commonly published by the microwave community and the communication/signal processing community that separately emphasize RF, circuit and antenna solutions for WPT on one hand and communications, signal and system designs for WPT on the other hand, this review article uniquely bridges RF, signal and system designs in order to bring those communities closer to each other and get a better understanding of the fundamental building blocks of an efficient WPT network architecture. We start by reviewing the engineering requirements and design challenges of making mobile power a reality. We then review the state-of-the-art in a wide range of areas spanning sensors and devices, RF design for wireless power and wireless communications. We identify their limitations and make critical observations before providing some fresh new look and promising avenues on signal and system designs for WPT., Comment: submitted for publication
- Published
- 2017
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