169 results on '"Jonathan Lopez"'
Search Results
102. Activated BAX/BAK enable mitochondrial inner membrane permeabilisation and mtDNA release during cell death
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Andrew Oberst, João F. Passos, Kevin M. Ryan, Ann P. Wheeler, James Chapman, Giovanni Quarato, Stephen W.G. Tait, Joel S. Riley, Hiromi Sesaki, Leo M. Carlin, Matthew Pearson, James O'Prey, and Jonathan Lopez
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0303 health sciences ,Programmed cell death ,Mitochondrial DNA ,Chemistry ,Mitochondrion ,Cell biology ,03 medical and health sciences ,Cytosol ,0302 clinical medicine ,Apoptosis ,030220 oncology & carcinogenesis ,Inner membrane ,Inner mitochondrial membrane ,Bacterial outer membrane ,030304 developmental biology - Abstract
During apoptosis, pro-apoptotic BAX and BAK are activated, causing mitochondrial outer membrane permeabilisation (MOMP), caspase activation and cell death. However, even in the absence of caspase activity, cells usually die following MOMP. Such caspase-independent cell death is accompanied by inflammation that requires mitochondrial DNA (mtDNA) activation of cGAS-STING signaling. Because the mitochondrial inner membrane is thought to remain intact during apoptosis, we sought to address how matrix mtDNA could activate the cytosolic cGAS-STING signaling pathway. Strikingly, using super-resolution imaging, we show that mtDNA is efficiently released from mitochondria following MOMP. In a temporal manner, we find that following MOMP, BAX/BAK-mediated mitochondrial outer membrane pores gradually widen over time. This allows extrusion of the mitochondrial inner membrane into the cytosol whereupon it permeablises allowing mtDNA release. Our data demonstrate that mitochondrial inner membrane permeabilisation can occur during cell death in a BAX/BAK-dependent manner. Importantly, by enabling the cytosolic release of mtDNA, inner membrane permeabilisation underpins the immunogenic effects of caspase-independent cell death.
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- 2018
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103. [DICER1 mutated, solid/trabecular thyroid papillary carcinoma in an 11-year-old child]
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Lucie, Ravella, Jonathan, Lopez, Françoise, Descotes, Jean-Christophe, Lifante, Catherine, David, and Myriam, Decaussin-Petrucci
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DEAD-box RNA Helicases ,Ribonuclease III ,Neoplastic Syndromes, Hereditary ,Mutation, Missense ,Humans ,Point Mutation ,Female ,Thyroid Neoplasms ,Child ,Carcinoma, Papillary ,Neoplasm Proteins - Abstract
We report the case of an 11-year-old patient diagnosed with a solid variant of papillary thyroid carcinoma. Papillary thyroid carcinoma (PTC) is the most common thyroid cancer, representing 80-90% of all newly diagnosed thyroid cancers. Among the many variants described, solid/trabecular variant of papillary thyroid carcinoma is a rare entity and account for 3% of thyroid cancers. It is more common in children and young adults, and it is seen in higher proportion in post radiation papillary thyroid carcinoma cases. Histologically, solid variant papillary carcinoma is characterized by a predominantly solid, trabecular or insular growth pattern, and the presence of cytological features typical of PTC. Its main differential diagnosis is poorly differentiated thyroid carcinoma. It has a less favorable prognosis than the classical papillary type, with a higher risk of distant metastasis, extrathyroidal extension and lympho-vascular invasion. It is associated with a slightly lower long-term survival in adult cases, but not in children. The management of solid variant PTC includes surgery, associated or not with postoperative radioiodine ablation, according to the aggressiveness criteria. Our patient had a DICER1 somatic mutation. Carriers of germline DICER1 mutations are predisposed to a rare cancer syndrome, the DICER1 syndrome, with a higher risk of numerous tumors and infrequently differentiated thyroid carcinomas.
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- 2017
104. Abstract P4-11-24: TIF1[gamma] interacts with the TGFβ1/SMAD4 signaling leading to poorer outcome in operable breast cancer
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Nicolas Chopin, Ruth Rimohk, Germain Gillet, Thomas Bachelot, Goulvent Thibault, Jonathan Lopez, Nicolas Carrabin, Emilie Lavergne, Isabelle Treilleux, Sylvie Chabaud, Loay Kassem, and Laurent Fattet
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Oncology ,Cancer Research ,Pathology ,medicine.medical_specialty ,business.industry ,Cell growth ,medicine.disease ,medicine.disease_cause ,Metastasis ,medicine.anatomical_structure ,Breast cancer ,Apoptosis ,Tumor progression ,Internal medicine ,medicine ,Immunohistochemistry ,business ,Carcinogenesis ,Lymph node - Abstract
Background The Transforming growth factorβ (TGFβ) signaling has a paradoxical role in cancer development and outcome. It protects against tumorigenesis by inhibiting cell growth and promoting apoptosis, but at advanced stages, it promotes tumor progression. Besides, the prognostic significance of the TGFβ1, SMAD4 in breast cancer patients is also an area of many contradictions. Transcriptional intermediary factor 1γ (TIF1γ) is thought to interact with the TGFβ/SMAD signaling through different mechanisms. Our study aimed at defining the prognostic significance of TGFβ1, SMAD4 and TIF1γ expression in breast cancer patients in addition to detection of possible interactions among those markers that might affect the outcome and explain the contradictory results. Methods Immunohistochemistry was performed on TMA blocks prepared from samples of 248 operable breast cancer patients who presented at CLB between 1998 and 2001 using. The intensity and the percentage of stained tumor cells were integrated into a single score (0-6) and a cutoff was defined for high or low expression for each marker. Correlation was done between the TGFβ1, SMAD4 and TIF1γ expression with the clinico-pathologic parameters using Pearson’s chi-square test. Kaplan-Meier method was used to estimate distant metastasis free survival (DMFS), disease free survival (DFS) and overall survival (OS) and the difference between the groups was evaluated with log-rank test. Results 223 cases were assessable for TIF1γ, 204 for TGFβ1 and 173 for SMAD4. Median age at diagnosis was 55.8 years (range: 27 to 89 years). Tumors were larger than 20 mm in 49.2% and 45.2% had axillary lymph node (LN) metastasis (N1a to N3). 19.4% of the patients had SBR grade I tumors, 46.8% grade II tumors and 33.9% grade III tumors. ER was positive in 85.4%, PR in 75.5% and Her2-neu was over-expressed in 10% of the cases. Nuclear TIF1γ, cytoplasmic TGFβ1, nuclear and cytoplasmic SMAD4 staining was high in 35.9%, 30.4%, 27.7% and 52.6% respectively. TIF1γ expression was associated with younger age (p=0.006), higher SBR grade (p TGFβ1 expression in tumor cells was a marker of poor prognosis regarding DMFS (HR=2.28; 95%CI: 1.4 to 3.8; p=0.002), DFS (HR=2.00; 95% CI: 1.25 to 3.5; p=0.005) and OS (HR=1.89; 95%CI: 1.04 to 3.43; p=0.037). TIF1γ expression carried a tendency towards poorer DMFS (p=0.091), DFS (p=0.143) and OS (p=0.091). In the multivariate analysis TGFβ1 remained an independent predictor of shorter DMFS, DFS and OS after adjustment for age, tumor size, SBR grade and LN invasion. Moreover, the prognostic significance of TGFβ1 was more obvious in the TIF1γ high patient subgroup than in the patients with TIF1γ low expression. The subgroup expressing both markers had the worst DMFS (HR=3.2; 95%CI: 1.7 to 5.9; p Conclusion There is a crosstalk between the TIF1γ and the TGFβ1/SMAD4 signaling that deteriorate the outcome of operable breast cancer patients and when combined together they can serve as an effective prognostic tool for those patients. Citation Format: Loay Kassem, Laurent Fattet, Jonathan Lopez, Goulvent Thibault, Emilie Lavergne, Sylvie Chabaud, Nicolas Carrabin, Nicolas Chopin, Thomas Bachelot, Germain Gillet, Isabelle Treilleux, Ruth Rimohk. TIF1[gamma] interacts with the TGFβ1/SMAD4 signaling leading to poorer outcome in operable breast cancer [abstract]. In: Proceedings of the Thirty-Seventh Annual CTRC-AACR San Antonio Breast Cancer Symposium: 2014 Dec 9-13; San Antonio, TX. Philadelphia (PA): AACR; Cancer Res 2015;75(9 Suppl):Abstract nr P4-11-24.
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- 2015
105. Leveraging Technology to Blend Large-Scale Epidemiologic Surveillance With Social and Behavioral Science Methods: Successes, Challenges, and Lessons Learned Implementing the UNITE Longitudinal Cohort Study of HIV Risk Factors Among Sexual Minority Men in the United States
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Rendina, H Jonathon, Talan, Ali J, Tavella, Nicola F, Matos, Jonathan Lopez, Jimenez, Ruben H, Jones, S Scott, Salfas, Brian, and Westmoreland, Drew
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HIV infection epidemiology ,HIV infection risk factors ,SEXUAL minorities ,PUBLIC health surveillance ,MEN'S health ,HUMAN research subjects ,DIGITAL technology ,PATIENT selection ,PSYCHOLOGY ,SOCIAL sciences ,RISK assessment ,ODDS ratio ,LONGITUDINAL method ,HIV - Abstract
The use of digital technologies to conduct large-scale research with limited interaction (i.e. no in-person contact) and objective endpoints (i.e. biological testing) has significant potential for the field of epidemiology, but limited research to date has been published on the successes and challenges of such approaches. We analyzed data from a cohort study of sexual minority men across the United States, collected using digital strategies during a 10-month period from 2017 to 2018. Overall, 113,874 individuals were screened, of whom 26,000 were invited to the study, 10,691 joined the study, and 7,957 completed all enrollment steps, including return of a human immunodeficiency virus–negative sample. We examined group differences in completion of the steps towards enrollment to inform future research and found significant differences according to several factors, including age and race. This study adds to prior work to provide further proof-of-concept for this limited-interaction, technology-mediated methodology, highlighting some of its strengths and challenges, including rapid access to more diverse populations but also potential for bias due to differential enrollment. This method has strong promise, and future implementation research is needed to better understand the roles of burden, privacy, access, and compensation, to enhance representativeness and generalizability of the data generated. [ABSTRACT FROM AUTHOR]
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- 2021
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106. Predictive factors of outcome in poorly differentiated thyroid carcinomas
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Armelle Delahaye, Françoise Borson Chazot, Christelle De La Fouchardiere, Jonathan Lopez, Myriam Decaussin-Petrucci, Jean-Louis Peix, Jean-Christophe Lifante, Sandrine Masson, Julien Berthiller, Anne-Laure Giraudet, Françoise Descotes, and Claire Bournaud-Salinas
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Male ,Cancer Research ,Multivariate analysis ,Time Factors ,medicine.medical_treatment ,Kaplan-Meier Estimate ,Gastroenterology ,Radiation Tolerance ,0302 clinical medicine ,Poorly Differentiated Thyroid Carcinoma ,Risk Factors ,Medicine ,Child ,Promoter Regions, Genetic ,Telomerase ,Aged, 80 and over ,Cell Differentiation ,Middle Aged ,Treatment Outcome ,Oncology ,030220 oncology & carcinogenesis ,Disease Progression ,Thyroidectomy ,Female ,France ,Adjuvant ,Adult ,Proto-Oncogene Proteins B-raf ,medicine.medical_specialty ,Adolescent ,030209 endocrinology & metabolism ,Disease-Free Survival ,Thyroid carcinoma ,03 medical and health sciences ,Young Adult ,Refractory ,Internal medicine ,Biomarkers, Tumor ,Humans ,Thyroid Neoplasms ,Pathological ,Aged ,Proportional Hazards Models ,business.industry ,Poorly differentiated ,Carcinoma ,medicine.disease ,Genes, ras ,Multivariate Analysis ,Mutation ,Radiotherapy, Adjuvant ,business - Abstract
Background The prognosis of poorly differentiated thyroid carcinomas (PDTC) is heterogeneous though generally poor. The objectives of this study were to identify clinical and molecular factors of poor prognosis. Methods One hundred four consecutive patients treated for a PDTC between 01/01/2000 and 31/12/2010 were included in this study. A pathological review was done for all cases (blinded to clinical data and outcome). Results All patients underwent thyroidectomy. Adjuvant radioactive-iodine was administered in 95.2% of them. Tumours were pT3 or pT4 in 68.3% of cases and metastatic in 38.5% of patients. Extrathyroidal extension (ETE) was observed in 40% of patients. At the end of the initial treatment, only 37% of patients were considered in remission. Fifty-two patients (50%) became refractory to radioiodine during follow-up. The 5-year overall survival was 72.8% and the 5-year recurrence-free survival (RFS) was 45.3%. Remission after initial treatment was an independent factor of RFS (HR = 0.22; [0.10–0.49]). ETE was the only significant parameter influencing the overall survival in multivariate analysis. TERT promoter mutations at positions −124 (C228T) and −146 (C250T) were present in 38.1% of analysed patients and significantly associated with radioiodine resistance but not with overall survival. Half of TERT promoter mutant tumours harboured also RAS or BRAF mutations. Conclusion PDTC form a heterogeneous group of patients with usual late-stage diagnosis, low radioactive iodine avidity and frequent metastatic spread. TERT promoter mutations could help to identify patients with high risk of radio-iodine refractoriness.
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- 2017
107. Mutations of KIF5C cause a neurodevelopmental disorder of infantile-onset epilepsy, absent language, and distinctive malformations of cortical development
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Russell P. Saneto, Savannah Michels, Katie Golden-Grant, Kaylee Park, Kimberly Foss, Jonathan Lopez, and Ghayda M. Mirzaa
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0301 basic medicine ,Male ,Kinesins ,Biology ,medicine.disease_cause ,Bioinformatics ,Article ,03 medical and health sciences ,Epilepsy ,0302 clinical medicine ,Neurodevelopmental disorder ,Neuroimaging ,Intellectual Disability ,Intellectual disability ,Genetics ,medicine ,Polymicrogyria ,Humans ,Genetics (clinical) ,Language ,Cerebral Cortex ,Mutation ,Pachygyria ,High-Throughput Nucleotide Sequencing ,Infant ,Cortical dysplasia ,medicine.disease ,Malformations of Cortical Development ,030104 developmental biology ,Neurodevelopmental Disorders ,Female ,Lissencephaly ,030217 neurology & neurosurgery - Abstract
The clinical diagnosis of malformations of cortical development (MCDs) is often challenging due to the complexity of the brain malformation by neuroimaging, the rarity of individual malformation syndromes, and the rapidly evolving genetic landscape of these disorders facilitated with the use of Next Generation Sequencing (NGS) methods. While the clinical and molecular diagnosis of severe cortical malformations, such as classic lissencephaly, is often straightforward, the diagnosis of more subtle and complex types of cortical malformations, such as pachygyria and polymicrogyria (PMG), can be more challenging due to limited knowledge regarding their genetic etiologies. Here, we report two individuals with the same de novo KIF5C mutation who present with subtle malformations of cortical development, early onset epilepsy and significant neurodevelopmental and behavioral issues including absent language. Our data, combined with the limited literature on KIF5C mutations, to date, support that KIF5C mutations are associated with a neurodevelopmental disorder characterized by infantile onset epilepsy, and subtle but recognizable types of brain malformations. We also show that the spectrum of KIF5C mutations is narrow, as five out of the six identified individuals have mutations affecting amino acid Glu237. Therefore, the identification of the clinical and neuroimaging features of this disorder may strongly facilitate rapid and efficient molecular diagnosis.
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- 2017
108. Lie algebras and cohomology of congruence subgroups for
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Jonathan Lopez
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Combinatorics ,Algebra and Number Theory ,Group (mathematics) ,Lie algebra ,Special linear group ,Congruence (manifolds) ,Commutative ring ,Abelian group ,Cohomology ,Mathematics ,Congruence subgroup - Abstract
Let R be a commutative ring that is free of rank k as an abelian group, p a prime, and S L n ( R ) the special linear group. We show that the Lie algebra associated to the filtration of S L n ( R ) by p -congruence subgroups is isomorphic to the tensor product s l n ( R ⊗ Z Z / p ) ⊗ F p t F p [ t ] , the Lie algebra of polynomials with zero constant term and coefficients n × n traceless matrices with entries polynomials in k variables over F p . We also use the underlying group structure to obtain several homological results. For example, we compute the first homology group of the level p -congruence subgroup for n ≥ 3 . We show that the cohomology groups of the level p r -congruence subgroup are not finitely generated for n = 2 and R = Z [ t ] . Finally, we show that for n = 2 and R = Z [ i ] (the Gaussian integers) the second cohomology group of the level p r -congruence subgroup has dimension at least two as an F p -vector space.
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- 2014
109. Is the optimal biological dose of oncologic molecular-targeted therapies also clinically effective?
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Jonathan Lopez, Gilles Freyer, Denis Maillet, Benoit You, Julien Péron, Pauline Corbaux, Michel Tod, and Mevidette El Madani
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Oncology ,Cancer Research ,medicine.medical_specialty ,business.industry ,Internal medicine ,medicine ,Molecular Targeted Therapies ,business - Abstract
3060 Background: The determination of the optimal biological dose (OBD) defined as the lowest safe dose associated with biological efficacy, appears to be a promising endpoint for defining the recommended phase 2 trial dose (RP2D) of novel oncologic targeted therapies in early-phase clinical trials. However, the clinical relevance of OBD is still unknown. We conducted a review to assess if the OBDs of molecular targeted therapies defined during early phase trials were useful during subsequent drug development and for oncologic drug approvals. Methods: A systematic review was conducted to identify all the molecular targeted therapies approved by FDA in solid and hematological malignancies, and for which early phase trials defined OBDs. The publications of efficacy trials leading to the first FDA approvals were reviewed, as were the FDA approved doses and dosing schedules, which were compared to OBDs found in the early phase trials. Results: OBDs were reported in the early phase trial articles of 39.5% (32/81) FDA approved targeted therapies from 1999 to 2017 (19 small molecules and 13 monoclonal antibodies (mAbs)). The maximum tolerated doses (MTD) had not been reached for 59.4% (19/32) of these drugs. When both MTD and OBD had been defined, OBD were lower than MTD in 84.6% of cases, and equal for the others. The OBDs were chosen as the RP2Ds for 56.3% of the molecules. In that case, the final FDA approved doses were consistent with the OBDs for 83.3% of the drugs. These percentages did not differ in between small molecules and mAbs. OBDs mainly relied on indirect effects on the involved signaling pathway elements for small molecules (11/19, 57.9%), and on involved receptor occupancies for mAbs (6/13, 46.2%). In total, 23.5% of all FDA approved molecular targeted therapies were approved at their OBDs. Conclusions: Although still poorly investigated, OBD may represent a relevant complementary endpoint in in early phase trials of novel anti-cancer targeted therapies, as OBDs are selected as the final FDA approved doses in 83.3 % of cases when chosen as the RP2Ds, which is much higher than the previously reported 58.0 % when MTDs are chosen as the RP2Ds (Fontes-Jardim et al. JNCI 2015).
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- 2019
110. Amniotic fluid glial fibrillary acidic protein (AF-GFAP), a biomarker of open neural tube defects
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Ivan Mikaelian, Philippe Gonzalo, and Jonathan Lopez
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congenital, hereditary, and neonatal diseases and abnormalities ,Amniotic fluid ,Glial fibrillary acidic protein ,biology ,Gastroschisis ,Spina bifida ,Neural tube ,Obstetrics and Gynecology ,Gestational age ,medicine.disease ,Acetylcholinesterase ,Andrology ,chemistry.chemical_compound ,medicine.anatomical_structure ,chemistry ,Immunology ,biology.protein ,medicine ,Biomarker (medicine) ,Genetics (clinical) - Abstract
Objective Neural tube defects (NTDs) are usually identified by ultrasonography and confirmed by alpha-fetoprotein (AFP) assay and acetylcholinesterase (AchE) electrophoresis in amniotic fluid. Yet, both of these biomarkers can be found positive in other etiologies. Here, amniotic fluid glial fibrillary acidic protein (AF-GFAP), which was identified by a proteomic study, is shown to be a useful biomarker for NTD diagnosis. Method Amniotic fluid glial fibrillary acidic protein was measured by an ELISA assay in 138 cases of NTDs. Seventy samples from normal pregnancies used as controls and 27 samples giving false positive or false negative results either for AchE or AFP and corresponding to fetal death (n = 8), gastroschisis (n = 8), and unexplained etiologies (n = 11) were also tested. Results Whatever the gestational age, GFAP was below 0.2 ng/mL in control samples, whereas 99.1% of open NTDs (29/29 in the anterior NTD group and 80/81 in the spina bifida group) were above this threshold. Closed NTDs were all negative (28/28). None of the other samples tested were positive, except in case of fetal death (8/8). Conclusions Amniotic fluid glial fibrillary acidic protein is a sensitive biomarker for open NTD diagnosis with a good negative predictive value for closed NTD. Compared with AFP and AchE, our results indicate that AF-GFAP alone is more efficient than this classical association. © 2013 John Wiley & Sons, Ltd.
- Published
- 2013
111. Influenza-associated global amnesia and hippocampal imaging abnormality
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Geoffrey A. Kerchner, Gayle K. Deutsch, Anita A. Koshy, Catherine Lomen-Hoerth, and Jonathan Lopez
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Male ,Pathology ,Neuropsychological Tests ,Hippocampal formation ,Influenza-associated encephalopathy ,medicine.disease_cause ,Hippocampus ,Influenza A virus ,2.1 Biological and endogenous factors ,Psychology ,Aetiology ,Young adult ,Experimental Psychology ,Infectious Diseases ,Pneumonia & Influenza ,Cardiology ,Biomedical Imaging ,Cognitive Sciences ,Diffusion-weighted imaging ,medicine.symptom ,Abnormality ,Infection ,Human ,medicine.medical_specialty ,Clinical Sciences ,Amnesia ,Article ,Influenza associated encephalopathy ,Vaccine Related ,Young Adult ,Arts and Humanities (miscellaneous) ,Biodefense ,Internal medicine ,Influenza, Human ,Behavioral and Social Science ,Acquired Cognitive Impairment ,medicine ,Humans ,business.industry ,Prevention ,Neurosciences ,Influenza a ,Recovery of Function ,Influenza ,Brain Disorders ,Diffusion Magnetic Resonance Imaging ,Emerging Infectious Diseases ,nervous system ,Neurology (clinical) ,business ,Diffusion MRI - Abstract
The acute phase of influenza infection is rarely associated with significant cognitive dysfunction. We describe a case of a 24 year-old man who developed global amnesia in the acute phase of influenza A infection. His deficits resolved over the course of several weeks. Transient abnormalities of diffusion and T2-weighted imaging were seen in the bilateral hippocampi. We review cerebral complications of influenza and discuss the possible role of previously proposed mechanisms in our patient’s case.
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- 2013
112. Inclusión educativa para personas con discapacidad a través de recursos didácticos digitales
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Jonathan López Hernández, Arcelia Bernal Díaz, and María Teresa Barrón Tirado
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Recursos didácticos ,tecnología ,inclusión ,discapacidad ,Special aspects of education ,LC8-6691 ,Theory and practice of education ,LB5-3640 - Abstract
La educación para la diversidad representa una forma de planificar, enseñar y aprender de diferente manera, cambiar la mentalidad del educando, el profesor y la comunidad. La “educación inclusiva” implica tolerancia, respeto y solidaridad (UNESCO, 1990). El artículo presenta un relato de experiencia en torno al diseño de un material didáctico digital para la sistematización del Informe Psicopedagógico de las Personas con Discapacidad, como parte del Programa de Atención Psicopedagógica de la Facultad de Estudios Superiores Aragón que se desarrolla en la Universidad Nacional Autónoma de México. En este trabajo se construyeron comunidades virtuales de aprendizaje transdisciplinario, con el propósito de impulsar una participación activa entre docentes y prestadores universitarios de servicio social. La metodología empleada se basó en la investigación-acción, la cual permitió realizar una indagación reflexiva mediante actores sociales en el lapso de la pandemia provocada por el virus SARS-CoV-2/ COVID-19, contando con 7 estudiantes universitarios, 3 docentes y 7 personas con discapacidad. Los resultados obtenidos mostraron que, a través de recursos digitales interactivos alojados en una nube, se logró sistematizar el diseño de informes, lo cual incluye diagnóstico, programa, plan de acción, actividades realizadas, material didáctico y evaluación. Cada uno de ellos contiene las pruebas aplicadas, así como acciones y recursos utilizados para dar seguimiento a los avances del proceso de aprendizaje de la persona con discapacidad.
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- 2023
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113. Digital fixed points, approximate fixed points, and universal functions
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Joel Louwsma, Ozgur Ege, Laurence Boxer, Ismet Karaca, Jonathan Lopez, and Ege Üniversitesi
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FOS: Computer and information sciences ,Digitally continuous ,Current (mathematics) ,Discrete Mathematics (cs.DM) ,Universal function ,02 engineering and technology ,lcsh:Analysis ,Fixed point ,Fixed-point property ,Topology ,01 natural sciences ,Digital image ,Euclidean geometry ,FOS: Mathematics ,0202 electrical engineering, electronic engineering, information engineering ,Mathematics - Combinatorics ,0101 mathematics ,Digital topology ,Mathematics ,Continuous function ,lcsh:Mathematics ,010102 general mathematics ,lcsh:QA299.6-433 ,lcsh:QA1-939 ,Primary 55M20, Secondary 55N35 ,020201 artificial intelligence & image processing ,Combinatorics (math.CO) ,Geometry and Topology ,Computer Science - Discrete Mathematics - Abstract
WOS: 000385533700008, A. Rosenfeld [23] introduced the notion of a digitally continuous function between digital images, and showed that although digital images need not have fixed point properties analogous to those of the Euclidean spaces modeled by the images, there often are approximate fixed point properties of such images. In the current paper, we obtain additional results concerning fixed points and approximate fixed points of digitally continuous functions. Among these are several results concerning the relationship between universal functions and the approximate fixed point property (AFPP).
- Published
- 2016
114. Case Report of Subdural Hematoma in a Patient With Sturge–Weber Syndrome and Literature Review
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Kristen W. Yeom, Keith Van Haren, Jonathan Lopez, and Anne M. Comi
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Male ,medicine.medical_specialty ,genetic structures ,Developmental Disabilities ,Sturge–Weber syndrome ,Magnetic resonance angiography ,Hematoma ,Atrophy ,Sturge-Weber Syndrome ,medicine ,Hematoma, Subdural, Acute ,Humans ,Toddler ,Neurologic Examination ,Aspirin ,medicine.diagnostic_test ,business.industry ,Anti-Inflammatory Agents, Non-Steroidal ,Brain ,Infant ,Magnetic resonance imaging ,medicine.disease ,Magnetic Resonance Imaging ,Surgery ,Paresis ,Child, Preschool ,Pediatrics, Perinatology and Child Health ,Disease Progression ,sense organs ,Neurology (clinical) ,Complication ,business ,Magnetic Resonance Angiography ,Follow-Up Studies ,medicine.drug - Abstract
Sturge–Weber syndrome is a neurocutaneous disorder associated with vascular abnormalities in the skin, eye, and brain leading to both acute and chronic cerebral hypoperfusion and, in some affected children, brain injury. Aspirin can reduce stroke-like events and seizure episodes and prevent further brain injuries in these patients. Although a few cases of intracranial hemorrhage in patients with Sturge–Weber syndrome have been reported, prior reports have not discussed this complication with regard to particular therapies. The authors present a toddler with Sturge–Weber syndrome who developed a subdural hematoma in the setting of a mechanical fall with minor head trauma. They discuss the possible role of aspirin in contributing to, or perhaps protecting against, intracranial hemorrhage in patients with Sturge–Weber syndrome. Further data are needed to establish the utility of aspirin in Sturge–Weber syndrome.
- Published
- 2012
115. Src tyrosine kinase inhibits apoptosis through the Erk1/2- dependent degradation of the death accelerator Bik
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R Rimokh, G Gillet, Jonathan Lopez, Ivan Mikaelian, C Hesling, Julien Prudent, N Popgeorgiev, Philippe Gonzalo, and R Gadet
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Programmed cell death ,MAP Kinase Signaling System ,MAP Kinase Kinase 2 ,MAP Kinase Kinase 1 ,Oncogene Protein p21(ras) ,Biology ,Inhibitor of apoptosis ,Mitochondrial Proteins ,Mice ,Cell Line, Tumor ,Neoplasms ,medicine ,Animals ,Humans ,Staurosporine ,Enzyme Inhibitors ,Molecular Biology ,Adaptor Proteins, Signal Transducing ,Mitogen-Activated Protein Kinase 1 ,Original Paper ,Mitogen-Activated Protein Kinase 3 ,Membrane Proteins ,Cell Biology ,Cell biology ,Enzyme Activation ,src-Family Kinases ,Proteasome ,Drug Resistance, Neoplasm ,Apoptosis ,Proteolysis ,NIH 3T3 Cells ,Cancer research ,Thapsigargin ,Phosphorylation ,raf Kinases ,Apoptosis Regulatory Proteins ,Tyrosine kinase ,medicine.drug ,Proto-oncogene tyrosine-protein kinase Src - Abstract
Src, the canonical member of the non-receptor family of tyrosine kinases, is deregulated in numerous cancers, including colon and breast cancers. In addition to its effects on cell proliferation and motility, Src is often considered as an inhibitor of apoptosis, although this remains controversial. Thus, whether the ability of Src to generate malignancies relies on an intrinsic aptitude to inhibit apoptosis or requires preexistent resistance to apoptosis remains somewhat elusive. Here, using mouse fibroblasts transformed with v-Src as a model, we show that the observed Src-dependent resistance to cell death relies on Src ability to inhibit the mitochondrial pathway of apoptosis by specifically increasing the degradation rate of the BH3-only protein Bik. This effect relies on the activation of the Ras–Raf–Mek1/2–Erk1/2 pathway, and on the phosphorylation of Bik on Thr124, driving Bik ubiquitylation on Lys33 and subsequent degradation by the proteasome. Importantly, in a set of human cancer cells with Src-, Kras- or BRAF-dependent activation of Erk1/2, resistances to staurosporine or thapsigargin were also shown to depend on Bik degradation rate via a similar mechanism. These results suggest that Bik could be a rate-limiting factor for apoptosis induction of tumor cells exhibiting deregulated Erk1/2 signaling, which may provide new opportunities for cancer therapies.
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- 2012
116. New approach for measurement of non-SHBG-bound testosterone in human plasma
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Jonathan Lopez, Véronique Raverot, Michel Pugeat, Henri Déchaud, and C. Grenot
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Male ,Ammonium sulfate ,Globulin ,medicine.drug_class ,Radioimmunoassay ,Monoclonal antibody ,Biochemistry ,Analytical Chemistry ,Magnetics ,chemistry.chemical_compound ,Sex Hormone-Binding Globulin ,polycyclic compounds ,medicine ,Humans ,Environmental Chemistry ,Testosterone ,Peptide-mass fingerprint ,reproductive and urinary physiology ,Spectroscopy ,Ammonium sulfate precipitation ,Chromatography ,biology ,medicine.diagnostic_test ,Albumin ,Antibodies, Monoclonal ,chemistry ,Ammonium Sulfate ,Immunoassay ,biology.protein ,Female ,Antibodies, Immobilized ,hormones, hormone substitutes, and hormone antagonists ,Protein Binding - Abstract
Testosterone (T) circulates in the blood tightly bound to sex hormone-binding globulin (SHBG) and weakly to albumin. Measuring protein unbound T (free) or non-SHBG-bound T rather than total T has been recommended for the evaluation of androgen disorders in humans. Ammonium sulfate precipitation has been widely used to separate [SHBG-T] complex from free and albumin-bound T. To achieve more specificity in this separation, we used monoclonal anti-SHBG antibody and developed a suitable and convenient immunoassay for measuring non-SHBG-bound T. Magnetic beads were covalently coupled to a monoclonal anti-SHBG antibody to capture [SHBG-T] complex from plasma samples. Magnetic separation was then performed to allow measurement of non-SHBG-bound T in the supernatant by direct radioimmunoassay. When 300 microL of plasma samples were incubated at room temperature with 10 microL of anti-SHBG beads, residual SHBG concentration was undetectable in the supernatant. The specificity of proteins retained on anti-SHBG beads was further demonstrated by peptide mass fingerprint on a MALDI-TOF analyzer. The non-specific adsorption of T on beads was low (5%), and dissociation of T from SHBG-T complex was less than 5% after 180 min of incubation. The plasma concentrations of non-SHBG-bound T using anti-SHBG beads were highly correlated to those obtained using ammonium sulfate precipitation. We conclude that SHBG immunocapture is a highly specific and useful tool for an experimental direct measurement of plasma non-SHBG-bound T. This methodology is also convenient and appropriate for routine and automated assay.
- Published
- 2010
117. Lithium suppresses motility and invasivity of v-src-transformed cells by glutathione-dependent activation of phosphotyrosine phosphatases
- Author
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B D Néel, Jonathan Lopez, Germain Gillet, and A Chabadel
- Subjects
Cancer Research ,Lithium (medication) ,Blotting, Western ,Chick Embryo ,Protein tyrosine phosphatase ,Biology ,Chorioallantoic Membrane ,Oncogene Protein pp60(v-src) ,Mice ,Cell Movement ,Okadaic Acid ,Genetics ,medicine ,Animals ,Neoplastic transformation ,Enzyme Inhibitors ,Phosphorylation ,Molecular Biology ,Cell Proliferation ,Dose-Response Relationship, Drug ,Cell growth ,Wnt signaling pathway ,Neoplasms, Experimental ,Cell Transformation, Viral ,Glutathione ,Cell biology ,Enzyme Activation ,Microscopy, Fluorescence ,v-Src ,Lithium Compounds ,NIH 3T3 Cells ,Matrix Metalloproteinase 2 ,Protein Tyrosine Phosphatases ,Vanadates ,Signal transduction ,Lithium Chloride ,Reactive Oxygen Species ,Tyrosine kinase ,medicine.drug - Abstract
Lithium has long been used for the treatment and prophylaxis of bipolar mood disorder. However, nerve cells are not the sole targets of lithium. Indeed, lithium was reported to target numerous cell types, and affect cell proliferation, differentiation and death. Thus, the idea has been raised that lithium may act on signaling pathways involved in neoplastic transformation. Indeed, the effect of lithium on tumor progression is currently being tested in a limited number of clinical trials. However, the molecular mechanisms by which lithium affects neoplastic transformation remain to be characterized. Here, using mouse fibroblasts transformed by the v-src oncogene as a model, we show that lithium drastically inhibits cell motility and compromises the invasive phenotype of v-src-transformed cells. In addition, we show that this effect is mediated by the activation of phosphotyrosine phosphatases, but not by the direct inhibition of the v-Src tyrosine kinase. Finally, we show that lithium activates phosphotyrosine phosphatases by the modulation of the redox status of the cell, independently of the Wnt and the inositol phosphate canonical pathways. Thus, this study supports the idea that lithium, acting similar to an antioxydizer, may have antimetastatic properties in vivo.
- Published
- 2009
118. Prototype of a system to determine evacuation routes: A case in the USTA Tunja
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Camilo Pardo, Julian Monsalve, Jonathan Lopez, Luis Sosa, and Lina Rojas
- Subjects
Engineering ,Software ,Emergency response ,Multimedia ,business.industry ,Server ,Principal (computer security) ,Mobile computing ,Mobile telephony ,Natural disaster ,business ,computer.software_genre ,computer - Abstract
The electronic and computational development has helped to create many new applications where the principal idea is obtaining better results in case of an emergency. Over time, we have investigated about new processes and strategies to analyze data, and how to use by audiovisual media to teach people to respond to emergency response, or any natural disaster as a seism.
- Published
- 2015
119. Does Molecular Genotype Provide Useful Information in the Management of Radioiodine Refractory Thyroid Cancers? Results of a Retrospective Study
- Author
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Nadia Oussaid, Myriam Decaussin-Petrucci, Claire Bournaud-Salinas, Anne-Laure Giraudet, Qing Wang, Jonathan Lopez, Jean-Louis Peix, Christelle De La Fouchardiere, Marie-Eve Fondrevelle, Jean-Christophe Lifante, Pierre-Paul Bringuier, Olfa Derbel, and Françoise Borson-Chazot
- Subjects
Oncology ,Adult ,Male ,Cancer Research ,medicine.medical_specialty ,Pathology ,endocrine system diseases ,Genotype ,030209 endocrinology & metabolism ,Adenocarcinoma ,Radiation Tolerance ,Thyroid carcinoma ,Iodine Radioisotopes ,03 medical and health sciences ,0302 clinical medicine ,Poorly Differentiated Thyroid Carcinoma ,Refractory ,Internal medicine ,medicine ,Biomarkers, Tumor ,Humans ,Pharmacology (medical) ,Molecular Targeted Therapy ,Prospective Studies ,Thyroid Neoplasms ,Aged ,Neoplasm Staging ,Retrospective Studies ,Aged, 80 and over ,business.industry ,Hazard ratio ,Thyroid ,Disease Management ,Retrospective cohort study ,Middle Aged ,medicine.disease ,Prognosis ,Carcinoma, Papillary ,Survival Rate ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Cohort ,Mutation ,Female ,business ,Follow-Up Studies - Abstract
Whether mutation status should be used to guide therapy is an important issue in many cancers. We correlated mutation profile in radioiodine-refractory (RAIR) metastatic thyroid cancers (TCs) with patient outcome and response to tyrosine kinase inhibitors (TKIs), and discussed the results with other published data. Outcome in 82 consecutive patients with metastatic RAIR thyroid carcinoma prospectively tested for BRAF, RAS and PI3KCA mutations was retrospectively analyzed, including 55 patients treated with multikinase inhibitors. Papillary thyroid carcinomas (PTCs) were the most frequent histological subtype (54.9 %), followed by poorly differentiated thyroid carcinoma [PDTC] (30.5 %) and follicular thyroid carcinoma [FTC] (14.6 %). A genetic mutation was identified in 23 patients (28 %) and BRAF was the most frequently mutated gene (23 %). Median progression-free survival (PFS) on first-line TKI treatment was 14.6 months (95% CI 9.9–18.4). BRAF mutation positively influenced median PFS, both in the entire TKI-treated cohort (median PFS 34.7 months versus 11.6 months; hazard ratio [HR] 0.29; 95% CI 0.09–0.98; p = 0.03) and in the TKI-treated PTC cohort (n = 22) [log-rank p = 0.086; HR 2.95; 95 % CI 0.81–10.70). However, in TKI-treated patients, PDTC histologic subtype was the only independent prognostic factor for PFS identified in the multivariate analysis (HR 2.36; 95% CI 1.01–5.54; p = 0.048). Patients with BRAF-mutant PTC had a significantly longer PFS than BRAF wild-type when treated with TKIs. However, due to the small number of BRAF-mutant patients, further investigations are required, especially to understand the potential positive effect of BRAF mutations in RAIR TC patients while having a negative prognostic impact in RAI-sensitive PTC patients.
- Published
- 2015
120. Mito-priming as a method to engineer Bcl-2 addiction
- Author
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Jonathan Lopez, Margaux Bessou, Joel S. Riley, Evangelos Giampazolias, Franziska Todt, Tony Rochegüe, Andrew Oberst, Douglas R. Green, Frank Edlich, Gabriel Ichim, and Stephen W. G. Tait
- Subjects
Science ,Apoptosis ,Peptide Fragments ,Article ,Cell Line ,Mice ,Gene Expression Regulation ,Proto-Oncogene Proteins c-bcl-2 ,Proto-Oncogene Proteins ,Mitochondrial Membranes ,Animals ,Humans ,CRISPR-Cas Systems ,Apoptosis Regulatory Proteins ,Genetic Engineering - Abstract
Most apoptotic stimuli require mitochondrial outer membrane permeabilization (MOMP) in order to execute cell death. As such, MOMP is subject to tight control by Bcl-2 family proteins. We have developed a powerful new technique to investigate Bcl-2-mediated regulation of MOMP. This method, called mito-priming, uses co-expression of pro- and anti-apoptotic Bcl-2 proteins to engineer Bcl-2 addiction. On addition of Bcl-2 targeting BH3 mimetics, mito-primed cells undergo apoptosis in a rapid and synchronous manner. Using this method we have comprehensively surveyed the efficacy of BH3 mimetic compounds, identifying potent and specific MCL-1 inhibitors. Furthermore, by combining different pro- and anti-apoptotic Bcl-2 pairings together with CRISPR/Cas9-based genome editing, we find that tBID and PUMA can preferentially kill in a BAK-dependent manner. In summary, mito-priming represents a facile and robust means to trigger mitochondrial apoptosis., Apoptosis often requires mitochondrial outer membrane permeabilization, a process targeted by Bcl-2-binding BH3 mimetics. Here the authors describe and apply 'mito-priming', a method that allows triggering mitochondrial apoptosis in a synchronous manner, facilitating the investigation of mitochondrial apoptosis and its regulation by Bcl-2 proteins.
- Published
- 2015
121. TIF1γ interferes with TGFβ1/SMAD4 signaling to promote poor outcome in operable breast cancer patients
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Isabelle Treilleux, Thomas Bachelot, Jonathan Lopez, Thibaut Goulvent, Mathieu Deygas, Emilie Lavergne, Nicolas Chopin, Nicolas Carrabin, Germain Gillet, Sylvie Chabaud, Ruth Rimokh, Laurent Fattet, Loay Kassem, Clinical Oncology Department, Cairo University - Faculty of Medicine, Centre de Recherche en Cancérologie de Lyon (UNICANCER/CRCL), Centre Léon Bérard [Lyon]-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM), Centre Léon Bérard [Lyon], INSERM, CNRS, Ligue Nationale contre le Cancer (Savoie, grant to RR), Fondation ARC (Association pour la Recherche sur le Cancer, Novartis oncology (research grant to LK), Université de Lyon-Université de Lyon-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), and Duchange, Nathalie
- Subjects
Oncology ,Adult ,medicine.medical_specialty ,Pathology ,Cancer Research ,Cytoplasm ,Receptor, ErbB-2 ,Breast Neoplasms ,[SDV.CAN]Life Sciences [q-bio]/Cancer ,Disease-Free Survival ,Metastasis ,Transforming Growth Factor beta1 ,Breast cancer ,[SDV.CAN] Life Sciences [q-bio]/Cancer ,Surgical oncology ,Internal medicine ,medicine ,Carcinoma ,Genetics ,Humans ,Survival rate ,Lymph node ,Aged ,Neoplasm Staging ,Smad4 Protein ,Aged, 80 and over ,Cell Nucleus ,Tissue microarray ,business.industry ,Age Factors ,Middle Aged ,medicine.disease ,3. Good health ,Tumor Burden ,Survival Rate ,medicine.anatomical_structure ,Receptors, Estrogen ,Lymphatic Metastasis ,Immunohistochemistry ,Female ,Neoplasm Grading ,business ,Receptors, Progesterone ,Research Article ,Signal Transduction ,Transcription Factors - Abstract
Background The Transforming growth factor β (TGFβ) signaling has a paradoxical role in cancer development and outcome. Besides, the prognostic significance of the TGFβ1, SMAD4 in breast cancer patients is an area of many contradictions. The transcriptional intermediary factor 1γ (TIF1γ) is thought to interact with the TGFβ/SMAD signaling through different mechanisms. Our study aims to define the prognostic significance of TGFβ1, SMAD4 and TIF1γ expression in breast cancer patients and to detect possible interactions among those markers that might affect the outcome. Methods Immunohistochemistry was performed on tissue microarray (TMA) blocks prepared from samples of 248 operable breast cancer patients who presented at Centre Léon Bérard (CLB) between 1998 and 2001. The intensity and the percentage of stained tumor cells were integrated into a single score (0–6) and a cutoff was defined for high or low expression for each marker. Correlation was done between TGFβ1, SMAD4 and TIF1γ expression with the clinico-pathologic parameters using Pearson’s chi-square test. Kaplan-Meier method was used to estimate distant metastasis free survival (DMFS), disease free survival (DFS) and overall survival (OS) and the difference between the groups was evaluated with log-rank test. Results 223 cases were assessable for TIF1γ, 204 for TGFβ1 and 173 for SMAD4. Median age at diagnosis was 55.8 years (range: 27 to 89 years). Tumors were larger than 20 mm in 49.2 % and 45.2 % had axillary lymph node (LN) metastasis (N1a to N3). 19.4 % of the patients had SBR grade I tumors, 46.8 % grade II tumors and 33.9 % grade III tumors. ER was positive in 85.4 %, PR in 75.5 % and Her2-neu was over-expressed in 10 % of the cases. Nuclear TIF1γ, cytoplasmic TGFβ1, nuclear and cytoplasmic SMAD4 stainings were high in 35.9 %, 30.4 %, 27.7 % and 52.6 % respectively. TIF1γ expression was associated with younger age (p = 0.006), higher SBR grade (p
- Published
- 2015
122. Limited mitochondrial permeabilisation causes DNA-damage and genomic instability in the absence of cell death
- Author
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Martina Haller, Karen Blyth, Daniel J. Murphy, Stephen W.G. Tait, Anthony J. Chalmers, Shafiq U. Ahmed, Evangelos Giampazolias, Susan M. Mason, Jonathan Lopez, Bert van de Kooij, Lisa Bouchier-Hayes, Nathiya Muthalagu, Joel S. Riley, Melissa J. Parsons, Gabriel Ichim, Andrew Oberst, Rogier W. Rooswinkel, M. Eugenia Delgado, Markus Rehm, and Dimitris Athineos
- Subjects
Genome instability ,Programmed cell death ,biology ,top_sciences ,DNA damage ,Cytochrome c ,Cell ,Cell Biology ,Mitochondrion ,bacterial infections and mycoses ,urologic and male genital diseases ,Molecular biology ,Article ,female genital diseases and pregnancy complications ,Cell biology ,medicine.anatomical_structure ,Apoptosis ,medicine ,biology.protein ,Erratum ,Bacterial outer membrane ,Molecular Biology ,Caspase - Abstract
Summary During apoptosis, the mitochondrial outer membrane is permeabilized, leading to the release of cytochrome c that activates downstream caspases. Mitochondrial outer membrane permeabilization (MOMP) has historically been thought to occur synchronously and completely throughout a cell, leading to rapid caspase activation and apoptosis. Using a new imaging approach, we demonstrate that MOMP is not an all-or-nothing event. Rather, we find that a minority of mitochondria can undergo MOMP in a stress-regulated manner, a phenomenon we term “minority MOMP.” Crucially, minority MOMP leads to limited caspase activation, which is insufficient to trigger cell death. Instead, this caspase activity leads to DNA damage that, in turn, promotes genomic instability, cellular transformation, and tumorigenesis. Our data demonstrate that, in contrast to its well-established tumor suppressor function, apoptosis also has oncogenic potential that is regulated by the extent of MOMP. These findings have important implications for oncogenesis following either physiological or therapeutic engagement of apoptosis., Graphical Abstract, Highlights • MOMP can occur in a minority of mitochondria • Minority MOMP triggers caspase activity but fails to kill cells • Minority MOMP-induced caspase activity causes DNA damage and genomic instability • Minority MOMP promotes cellular transformation and tumorigenesis, During apoptosis, mitochondrial outer membrane permeabilization (MOMP) is widespread, leading to rapid cell death. Here, Ichim et al. demonstrate that MOMP can also be engaged in a minority of mitochondria without killing the cell. Instead, minority MOMP triggers caspase-dependent DNA damage and genomic instability, thereby promoting transformation and tumorigenesis.
- Published
- 2015
123. Contributors
- Author
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Giuliano Avanzini, Sheri Cotterman-Hart, Marco de Curtis, Milind Deogaonkar, Loredana Dinapoli, Tiziana Granata, J. Layne Moore, Laura Librizzi, Jonathan Lopez, Marta Maschio, Jesse W. Mindel, Herbert B. Newton, Jose J. Otero, Francesco Paladin, Leslie Ray, Ali Rezai, Andrea Rigamonti, Andrea Salmaggi, and Ammar Shaikhouni
- Published
- 2015
124. Brain-Tumor-Related Epilepsy in Children
- Author
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Jonathan Lopez
- Subjects
Pediatrics ,medicine.medical_specialty ,business.industry ,Incidence (epidemiology) ,Central nervous system ,Brain tumor ,medicine.disease ,Optimal management ,Pediatric patient ,Epilepsy ,medicine.anatomical_structure ,Epilepsy in children ,Epidemiology ,medicine ,business - Abstract
Biology, epidemiology, presentation, optimal management, and outcomes of brain tumors change throughout the lifespan. The most rapid changes occur in the first two decades of life. Brain tumors have a lower incidence in children than adults, but represent a higher overall proportion of childhood cancer. Despite a relatively low incidence of high-grade primary tumors and metastases, brain and other central nervous system tumors account for a substantial burden of childhood cancer morbidity and mortality. Seizures are an equally common manifestation of supratentorial tumors in children and adults, but tumors are a less common cause of seizures and epilepsy in childhood. Initial presentation with seizures portends a longer survival. Thus, seizures are often among the primary considerations for management. Optimal management strategies that account for the unique challenges of these combined diagnoses in the pediatric patient are evolving.
- Published
- 2015
125. Mitochondrial apoptosis: killing cancer using the enemy within
- Author
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Jonathan Lopez and Stephen W.G. Tait
- Subjects
Cancer Research ,Programmed cell death ,Cell Membrane Permeability ,Carcinogenesis ,Cell ,BCL-2 ,Mitochondrion ,medicine.disease_cause ,Metastasis ,Neoplasms ,Medicine ,Animals ,Humans ,business.industry ,apoptosis ,Cancer ,medicine.disease ,mitochondria ,medicine.anatomical_structure ,Oncology ,Apoptosis ,Immunology ,Cancer cell ,Cancer research ,cancer therapy ,Minireview ,business ,Signal Transduction - Abstract
Apoptotic cell death inhibits oncogenesis at multiple stages, ranging from transformation to metastasis. Consequently, in order for cancer to develop and progress, apoptosis must be inhibited. Cell death also plays major roles in cancer treatment, serving as the main effector function of many anti-cancer therapies. In this review, we discuss the role of apoptosis in the development and treatment of cancer. Specifically, we focus upon the mitochondrial pathway of apoptosis—the most commonly deregulated form of cell death in cancer. In this process, mitochondrial outer membrane permeabilisation or MOMP represents the defining event that irrevocably commits a cell to die. We provide an overview of how this pathway is regulated by BCL-2 family proteins and describe ways in which cancer cells can block it. Finally, we discuss exciting new approaches aimed at specifically inducing mitochondrial apoptosis in cancer cells, outlining their potential pitfalls, while highlighting their considerable therapeutic promise.
- Published
- 2014
126. Killing the Killer: PARC/CUL9 promotes cell survival by destroying cytochrome C
- Author
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Stephen W.G. Tait and Jonathan Lopez
- Subjects
Programmed cell death ,biology ,Cell Survival ,Cytochrome c ,Cytochromes c ,Apoptosis ,Cell Biology ,Mitochondrion ,Biochemistry ,Models, Biological ,Ubiquitin ligase ,Cell biology ,Transferases ,Cancer cell ,Proteolysis ,biology.protein ,Humans ,APAF1 ,Carrier Proteins ,Molecular Biology ,Caspase - Abstract
Balanced amounts of apoptotic cell death are essential for health; its deregulation plays key roles in neurodegeneration, autoimmunity, and cancer. Mitochondria orchestrate apoptosis through a process called mitochondrial outer-membrane permeabilization (MOMP). After MOMP, mitochondrial cytochrome c is released into the cytoplasm, where it binds the adaptor molecule APAF1, triggering caspase protease activation and cell death. In this issue of Science Signaling, Deshmukh and colleagues define a new survival mechanism downstream of mitochondrial permeabilization. Specifically, they identify proteasomal degradation of cytochrome c as a major determinant of cell survival. In an unbiased approach, PARC (also known as CUL9) was found to be the ubiquitin ligase responsible for the ubiquitination and proteasomal degradation of cytochrome c. The consequences of this survival process may be double-edged because both cancer cells and postmitotic cells use PARC/CUL9-mediated cytochrome c degradation to ensure cell survival. Ultimately, differential targeting of this process may promote survival of postmitotic tissue or enhance tumor-specific killing.
- Published
- 2014
127. Re: 'Sticks and Stones' by Joseph I. Sirven
- Author
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Jonathan Lopez
- Subjects
business.industry ,Art history ,Medicine ,Neurology (clinical) ,business ,Letter to the Editor - Published
- 2014
128. Correlation of CD34+Cell Counts with Volume of Bone Marrow Collected for Allogeneic Bone Marrow Harvests
- Author
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David J. Bickford, Rex E. Hensley, Deborah L. Ornstein, Mark T. Schroeder, Brenda L. Kissack, David Ririe, Paul J. Shaughnessy, Richard Smith, and Jonathan Lopez
- Subjects
Adult ,Male ,Pathology ,medicine.medical_specialty ,Adolescent ,Cd34 cells ,Immunology ,CD34 ,Antigens, CD34 ,Cell Count ,Human leukocyte antigen ,Nuclear Family ,Bone Marrow ,medicine ,Humans ,Transplantation, Homologous ,Single-Blind Method ,Prospective Studies ,Autogenous bone ,Bone Marrow Transplantation ,business.industry ,Bone marrow donors ,Hematology ,Middle Aged ,Hematopoietic Stem Cells ,Peripheral blood ,medicine.anatomical_structure ,Histocompatibility ,Blood Component Removal ,Female ,Bone marrow ,business ,Blinded study - Abstract
The quantity of bone marrow collected for allogeneic bone marrow transplantation is based on collecting 10 to 15 cc of bone marrow/kg of recipient weight. We hypothesized that the percentage of CD34+ cells collected during a bone marrow harvest decreased at the end of the harvest because of increasing amounts of peripheral blood contamination. We performed a prospective, blinded study in which we measured CD34+ percentages and cell counts at 200-cc intervals during bone marrow harvests from 11 consecutive human leukocyte antigen (HLA)-matched sibling bone marrow donors. We observed that the percentage of CD34+ cells in aspirated bone marrow did not vary significantly from the start to the end of the bone marrow harvest, and the total number of CD34+ cells/kg increased in a linear fashion, thus disproving our original hypothesis. In conclusion, the percentage of CD34+ cells in aspirated bone marrow will remain constant throughout a bone marrow harvest.
- Published
- 2000
129. EXPERIMENTAL PSEUDOMONAL POSTTRAUMATIC ENDOPHTHALMITIS IN A SWINE MODEL
- Author
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D V Alfaro, Jonathan Lopez, Lowrey King, David Beverey, Eric Kasowski, Chester Barton, Steven Hudson, and Allison Brucker
- Subjects
Imipenem ,Swine ,medicine.drug_class ,Antibiotics ,Ceftazidime ,Eye Infections, Bacterial ,Injections ,Intraocular inflammation ,Endophthalmitis ,polycyclic compounds ,medicine ,Animals ,Pseudomonas Infections ,Amikacin ,business.industry ,General Medicine ,Limiting ,biochemical phenomena, metabolism, and nutrition ,bacterial infections and mycoses ,medicine.disease ,Eye Injuries, Penetrating ,Anti-Bacterial Agents ,Cephalosporins ,Vitreous Body ,Disease Models, Animal ,Ophthalmology ,Anesthesia ,Pseudomonas aeruginosa ,Thienamycins ,business ,Sclera ,Follow-Up Studies ,medicine.drug - Abstract
To compare the intravitreal efficacy of three separately administered antibiotics (imipenem, ceftazidime, and amikacin) in limiting the intraocular inflammation and tissue destruction caused by posttraumatic pseudomonal endophthalmitis.Thirty-three Yorkshire pigs each received a surgically induced scleral injury to the right eye. After repair, each eye was injected with 22,000 colony-forming units of live Pseudomonas aeruginosa. Pigs then were randomly grouped into a natural-history-of-infection group in which no treatment was given (n = 9) or into groups treated with the following: intravitreal imipenem (n = 6), ceftazidime (n = 6), amikacin (n = 6), or normal saline (n = 6). Pigs then were observed clinically for 18-24 hours after surgery and enucleated for histopathologic examination.Clinical examinations revealed significantly less posterior segment inflammation in pigs treated with amikacin and imipenem than in pigs in the natural history or saline control groups, based on the Wilcoxon rank sum test (P.05). Histopathologic examinations showed similar results, with less intraocular inflammation and retinal destruction in pigs treated with amikacin and imipenem, whereas the inflammation in pigs treated with ceftazidime did not differ significantly from that in control pigs.Intravitreal antibiotic treatment with imipenem or amikacin appears to limit intraocular inflammation and retinal tissue damage when given early in the course of posttraumatic pseudomonal endopthalmitis. Results with ceftazidime are less conclusive.
- Published
- 1997
130. National variation in costs and mortality for leukodystrophy patients in US children's hospitals
- Author
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Clint Nelson, Xiaoming Sheng, Cameron Brimley, E. Kent Korgenski, Rajendu Srivastava, Jonathan Lopez, Jacob Wilkes, Keith Van Haren, and Joshua L. Bonkowsky
- Subjects
Male ,Pediatrics ,medicine.medical_specialty ,Disease ,Article ,Cohort Studies ,Developmental Neuroscience ,Cost of Illness ,medicine ,Humans ,Child ,Retrospective Studies ,business.industry ,Mortality rate ,Procedure code ,Leukodystrophy ,Health services research ,Retrospective cohort study ,Leukodystrophy, Metachromatic ,medicine.disease ,Hospitals, Pediatric ,United States ,Hospitalization ,Pediatric patient ,Neurology ,Child, Preschool ,Pediatrics, Perinatology and Child Health ,Female ,Neurology (clinical) ,business ,Algorithms ,Cohort study - Abstract
Background Inherited leukodystrophies are progressive, debilitating neurological disorders with few treatment options and high mortality rates. Our objective was to determine national variation in the costs for leukodystrophy patients and to evaluate differences in their care. Methods We developed an algorithm to identify inherited leukodystrophy patients in deidentified data sets using a recursive tree model based on International Classification of Disease, 9th Edition, Clinical Modification, diagnosis and procedure charge codes. Validation of the algorithm was performed independently at two institutions, and with data from the Pediatric Health Information System (PHIS) of 43 US children's hospitals, for a 7-year period between 2004 and 2010. Results A recursive algorithm was developed and validated, based on six International Classification of Disease, 9th Edition, Clinical Modification, codes and one procedure code that had a sensitivity up to 90% (range 61-90%) and a specificity up to 99% (range 53-99%) for identifying inherited leukodystrophy patients. Inherited leukodystrophy patients comprise 0.4% of admissions to children's hospitals and 0.7% of costs. During 7 years, these patients required $411 million of hospital care, or $131,000/patient. Hospital costs for leukodystrophy patients varied at different institutions, ranging from two to 15 times more than the average pediatric patient. There was a statistically significant correlation between higher volume and increased cost efficiency. Increased mortality rates had an inverse relationship with increased patient volume that was not statistically significant. Conclusions We developed and validated a code-based algorithm for identifying leukodystrophy patients in deidentified national datasets. Leukodystrophy patients account for $59 million of costs yearly at children's hospitals. Our data highlight potential to reduce unwarranted variability and improve patient care.
- Published
- 2013
131. Data-driven modeling of SRC control on the mitochondrial pathway of apoptosis: implication for anticancer therapy optimization
- Author
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Marie Doumic, Germain Gillet, Jonathan Lopez, Nikolay Popgeorgiev, Philippe Gonzalo, Annabelle Ballesta, Nonlinear Analysis for Biology and Geophysical flows (BANG), Laboratoire Jacques-Louis Lions (LJLL), Université Pierre et Marie Curie - Paris 6 (UPMC)-Université Paris Diderot - Paris 7 (UPD7)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Université Paris Diderot - Paris 7 (UPD7)-Centre National de la Recherche Scientifique (CNRS)-Inria Paris-Rocquencourt, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria), Department of pharmacology and systems therapeutics [Mount Sinai], Icahn School of Medicine at Mount Sinai [New York] (MSSM), Centre de Recherche en Cancérologie de Lyon (UNICANCER/CRCL), Centre Léon Bérard [Lyon]-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM), Université Pierre et Marie Curie - Paris 6 (UPMC)-Université Paris Diderot - Paris 7 (UPD7)-Centre National de la Recherche Scientifique (CNRS), Université de Lyon-Université de Lyon-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), and Ballesta, Annabelle
- Subjects
Apoptosis Inhibitor ,Cancer Treatment ,Apoptosis ,Mice ,0302 clinical medicine ,Molecular Cell Biology ,Staurosporine ,lcsh:QH301-705.5 ,Cell Line, Transformed ,bcl-2-Associated X Protein ,0303 health sciences ,Microscopy, Confocal ,Cell Death ,Ecology ,biology ,Systems Biology ,Applied Mathematics ,Mitochondria ,3. Good health ,Cell biology ,src-Family Kinases ,Proto-Oncogene Proteins c-bcl-2 ,Oncology ,Computational Theory and Mathematics ,030220 oncology & carcinogenesis ,Modeling and Simulation ,Medicine ,[INFO.INFO-MO] Computer Science [cs]/Modeling and Simulation ,[MATH.MATH-OC]Mathematics [math]/Optimization and Control [math.OC] ,Tyrosine kinase ,Research Article ,Proto-oncogene tyrosine-protein kinase Src ,medicine.drug ,Programmed cell death ,[MATH.MATH-DS]Mathematics [math]/Dynamical Systems [math.DS] ,Down-Regulation ,[MATH.MATH-DS] Mathematics [math]/Dynamical Systems [math.DS] ,Antineoplastic Agents ,[SDV.CAN]Life Sciences [q-bio]/Cancer ,[SDV.BC]Life Sciences [q-bio]/Cellular Biology ,Models, Biological ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,Bcl-2-associated X protein ,[SDV.CAN] Life Sciences [q-bio]/Cancer ,Genetics ,medicine ,Animals ,Humans ,Computer Simulation ,Biology ,Theoretical Biology ,Molecular Biology ,[SDV.BC] Life Sciences [q-bio]/Cellular Biology ,Ecology, Evolution, Behavior and Systematics ,030304 developmental biology ,Computational Biology ,[MATH.MATH-OC] Mathematics [math]/Optimization and Control [math.OC] ,Fibroblasts ,Chemotherapy and Drug Treatment ,[INFO.INFO-MO]Computer Science [cs]/Modeling and Simulation ,Signaling Networks ,lcsh:Biology (General) ,Cancer cell ,NIH 3T3 Cells ,biology.protein ,Drug Screening Assays, Antitumor ,Mathematics - Abstract
Src tyrosine kinases are deregulated in numerous cancers and may favor tumorigenesis and tumor progression. We previously described that Src activation in NIH-3T3 mouse fibroblasts promoted cell resistance to apoptosis. Indeed, Src was found to accelerate the degradation of the pro-apoptotic BH3-only protein Bik and compromised Bax activation as well as subsequent mitochondrial outer membrane permeabilization. The present study undertook a systems biomedicine approach to design optimal anticancer therapeutic strategies using Src-transformed and parental fibroblasts as a biological model. First, a mathematical model of Bik kinetics was designed and fitted to biological data. It guided further experimental investigation that showed that Bik total amount remained constant during staurosporine exposure, and suggested that Bik protein might undergo activation to induce apoptosis. Then, a mathematical model of the mitochondrial pathway of apoptosis was designed and fitted to experimental results. It showed that Src inhibitors could circumvent resistance to apoptosis in Src-transformed cells but gave no specific advantage to parental cells. In addition, it predicted that inhibitors of Bcl-2 antiapoptotic proteins such as ABT-737 should not be used in this biological system in which apoptosis resistance relied on the deficiency of an apoptosis accelerator but not on the overexpression of an apoptosis inhibitor, which was experimentally verified. Finally, we designed theoretically optimal therapeutic strategies using the data-calibrated model. All of them relied on the observed Bax overexpression in Src-transformed cells compared to parental fibroblasts. Indeed, they all involved Bax downregulation such that Bax levels would still be high enough to induce apoptosis in Src-transformed cells but not in parental ones. Efficacy of this counterintuitive therapeutic strategy was further experimentally validated. Thus, the use of Bax inhibitors might be an unexpected way to specifically target cancer cells with deregulated Src tyrosine kinase activity., Author Summary Personalizing medicine on a molecular basis has proven its clinical benefits. The molecular study of the patient's tumor and healthy tissues allowed the identification of determinant mutations and the subsequent optimization of healthy and cancer cells specific response to treatments. Here, we propose a combined mathematical and experimental approach for the design of optimal therapeutics strategies tailored to the patient molecular profile. As an in vitro proof of concept, we used parental and Src-transformed NIH-3T3 fibroblasts as a biological model. Experimental study at a molecular level of those two cell populations demonstrated differences in the gene expression of key-controllers of the mitochondrial pathway of apoptosis thus suggesting potential therapeutic targets. Molecular mathematical models were built and fitted to existing experimental data. They guided further experimental investigation of the kinetics of the mitochondrial pathway of apoptosis which allowed their refinement. Finally, optimization procedures were applied to those data-calibrated models to determine theoretically optimal therapeutic strategies that would maximize the anticancer efficacy on Src-transformed cells under the constraint of a maximal allowed toxicity on parental cells.
- Published
- 2013
132. Amniotic fluid glial fibrillary acidic protein (AF-GFAP), a biomarker of open neural tube defects
- Author
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Jonathan, Lopez, Ivan, Mikaelian, and Philippe, Gonzalo
- Subjects
Adult ,Young Adult ,Pregnancy ,Case-Control Studies ,Glial Fibrillary Acidic Protein ,Acetylcholinesterase ,Humans ,Female ,Gestational Age ,Neural Tube Defects ,alpha-Fetoproteins ,Amniotic Fluid ,Biomarkers - Abstract
Neural tube defects (NTDs) are usually identified by ultrasonography and confirmed by alpha-fetoprotein (AFP) assay and acetylcholinesterase (AchE) electrophoresis in amniotic fluid. Yet, both of these biomarkers can be found positive in other etiologies. Here, amniotic fluid glial fibrillary acidic protein (AF-GFAP), which was identified by a proteomic study, is shown to be a useful biomarker for NTD diagnosis.Amniotic fluid glial fibrillary acidic protein was measured by an ELISA assay in 138 cases of NTDs. Seventy samples from normal pregnancies used as controls and 27 samples giving false positive or false negative results either for AchE or AFP and corresponding to fetal death (n = 8), gastroschisis (n = 8), and unexplained etiologies (n = 11) were also tested.Whatever the gestational age, GFAP was below 0.2 ng/mL in control samples, whereas 99.1% of open NTDs (29/29 in the anterior NTD group and 80/81 in the spina bifida group) were above this threshold. Closed NTDs were all negative (28/28). None of the other samples tested were positive, except in case of fetal death (8/8).Amniotic fluid glial fibrillary acidic protein is a sensitive biomarker for open NTD diagnosis with a good negative predictive value for closed NTD. Compared with AFP and AchE, our results indicate that AF-GFAP alone is more efficient than this classical association.
- Published
- 2013
133. Bcl-wav and the mitochondrial calcium uniporter drive gastrula morphogenesis in zebrafish
- Author
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Germain Gillet, Jonathan Lopez, Rudy Gadet, Stéphen Manon, Philippe Herbomel, Corinne Houart, Benjamin Bonneau, Nikolay Popgeorgiev, Abdel Aouacheria, Ruth Rimokh, Julien Prudent, Philippe Gonzalo, Julien Thibaut, Centre de Recherche en Cancérologie de Lyon (UNICANCER/CRCL), Centre Léon Bérard [Lyon]-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Institut de biochimie et génétique cellulaires (IBGC), Université Bordeaux Segalen - Bordeaux 2-Centre National de la Recherche Scientifique (CNRS), Macrophages et Développement de l'Immunité, Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS), Laboratoire de Biologie Moléculaire de la Cellule (LBMC), École normale supérieure de Lyon (ENS de Lyon)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM), Institut Pasteur [Paris]-Centre National de la Recherche Scientifique (CNRS), and École normale supérieure - Lyon (ENS Lyon)-Université Claude Bernard Lyon 1 (UCBL)
- Subjects
Blastomeres ,Green Fluorescent Proteins ,Molecular Sequence Data ,Morphogenesis ,Notochord ,General Physics and Astronomy ,Apoptosis ,[SDV.BC]Life Sciences [q-bio]/Cellular Biology ,Biology ,General Biochemistry, Genetics and Molecular Biology ,Morpholinos ,03 medical and health sciences ,Mice ,0302 clinical medicine ,Cell Movement ,Animals ,Humans ,Amino Acid Sequence ,Zebrafish ,Cells, Cultured ,030304 developmental biology ,Genetics ,0303 health sciences ,Multidisciplinary ,Voltage-Dependent Anion Channel 1 ,Gastrulation ,Mitochondrial calcium uniporter ,Cell migration ,Biological Transport ,General Chemistry ,Gastrula ,Sequence Analysis, DNA ,biology.organism_classification ,Actins ,Cell biology ,Mitochondria ,Proto-Oncogene Proteins c-bcl-2 ,Gene Knockdown Techniques ,Calcium ,Calcium Channels ,Sequence Alignment ,030217 neurology & neurosurgery ,Intracellular ,HeLa Cells - Abstract
International audience; Bcl-2 proteins are acknowledged as key regulators of programmed cell death. However, increasing data suggest additional roles, including regulation of the cell cycle, metabolism and cytoskeletal dynamics. Here we report the discovery and characterization of a new Bcl-2-related multidomain apoptosis accelerator, Bcl-wav, found in fish and frogs. Genetic and molecular studies in zebrafish indicate that Bcl-wav and the recently identified mitochondrial calcium uniporter (MCU) contribute to the formation of the notochord axis by controlling blastomere convergence and extension movements during gastrulation. Furthermore, we found that Bcl-wav controls intracellular Ca(2+) trafficking by acting on the mitochondrial voltage-dependent anion channel, and possibly on MCU, with direct consequences on actin microfilament dynamics and blastomere migration guidance. Thus, from an evolutionary point of view, the original function of Bcl-2 proteins might have been to contribute in controlling the global positioning system of blastomeres during gastrulation, a critical step in metazoan development.
- Published
- 2013
134. What Does This Mutation Mean? The Tools and Pitfalls of Variant Interpretation in Lymphoid Malignancies.
- Author
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Yann, Guillermin, Jonathan, Lopez, Kaddour, Chabane, Sandrine, Hayette, Claire, Bardel, Gilles, Salles, Pierre, Sujobert, and Sarah, Huet
- Subjects
- *
LYMPHOID tissue , *HIGH throughput screening (Drug development) , *MOLECULAR biology , *NUCLEOTIDE sequencing , *SINGLE nucleotide polymorphisms - Abstract
High throughput sequencing (HTS) is increasingly important in determining cancer diagnoses, with subsequent prognostic and therapeutic implications. The biology of cancer is becoming increasingly deciphered and it is clear that therapy needs to be individually tailored. Whilst translational research plays an important role in lymphoid malignancies, few guidelines exist to guide biologists and routine laboratories through this constantly evolving field. In this article, we review the challenges of interpreting HTS in lymphoid malignancies and provide a toolkit to interpret single nucleotide variants obtained from HTS. We define the pre-analytical issues such as sequencing DNA obtained from formalin-fixed and paraffin-embedded tissue (FFPE), the acquisition of germline DNA, or the bioinformatic pitfalls, the analytical issues encountered and how to manage them. We describe the main constitutional and cancer databases, their characteristics and limitations, with an emphasis on variant interpretation in lymphoid malignancies. Finally, we discuss the challenges of predictions that one can make using in silico or in vitro modelling, pharmacogenomic screening, and the limits of those prediction tools. This description of the current status in genomic interpretation highlights the need for new large databases and international collaboration in the lymphoma field. [ABSTRACT FROM AUTHOR]
- Published
- 2018
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135. Tif1γ is essential for the terminal differentiation of mammary alveolar epithelial cells and for lactation through SMAD4 inhibition
- Author
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Ivan Mikaelian, Régine Losson, Cédric Hesling, Germain Gillet, Jonathan Lopez, Laurent Fattet, Daphné Blanchard, Alain Puisieux, Ruth Rimokh, Natascha Pigat, Philippe Gonzalo, Isabelle Treilleux, and Vincent Goffin
- Subjects
Male ,medicine.medical_specialty ,Receptor expression ,Mammary gland ,Mice, Transgenic ,Biology ,Transactivation ,Mice ,Mammary Glands, Animal ,Pregnancy ,Lactation ,Internal medicine ,medicine ,Animals ,Molecular Biology ,STAT5 ,Smad4 Protein ,Mice, Knockout ,Gene knockdown ,Cell Differentiation ,Epithelial Cells ,Prolactin ,Cell biology ,Mice, Inbred C57BL ,medicine.anatomical_structure ,Endocrinology ,biology.protein ,Female ,Developmental Biology ,Transforming growth factor ,Signal Transduction ,Transcription Factors - Abstract
Transforming growth factor β (TGFβ) is widely recognised as an important factor that regulates many steps of normal mammary gland (MG) development, including branching morphogenesis, functional differentiation and involution. Tif1γ has previously been reported to temporally and spatially control TGFβ signalling during early vertebrate development by exerting negative effects over SMAD4 availability. To evaluate the contribution of Tif1 γ to MG development, we developed a Cre/LoxP system to specifically invalidate the Tif1g gene in mammary epithelial cells in vivo. Tif1g-null mammary gland development appeared to be normal and no defects were observed during the lifespan of virgin mice. However, a lactation defect was observed in mammary glands of Tif1g-null mice. We demonstrate that Tif1 γ is essential for the terminal differentiation of alveolar epithelial cells at the end of pregnancy and to ensure lactation. Tif1 γ appears to play a crucial role in the crosstalk between TGFβ and prolactin pathways by negatively regulating both PRL receptor expression and STAT5 phosphorylation, thereby impairing the subsequent transactivation of PRL target genes. Using HC11 cells as a model, we demonstrate that the effects of Tif1g knockdown on lactation depend on both SMAD4 and TGFβ. Interestingly, we found that the Tif1γ expression pattern in mammary epithelial cells is almost symmetrically opposite to that described for TGFβ. We propose that Tif1γ contributes to the repression of TGFβ activity during late pregnancy and prevents lactation by inhibiting SMAD4.
- Published
- 2012
136. Remarks Concerning Lubotzky's Filtration
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Stratos Prassidis, F. R. Cohen, Marston Conder, and Jonathan Lopez
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Pure mathematics ,Group (mathematics) ,Discrete group ,General Mathematics ,Field (mathematics) ,Group Theory (math.GR) ,Type (model theory) ,Automorphism ,Product (mathematics) ,Lie algebra ,Filtration (mathematics) ,FOS: Mathematics ,Mathematics - Group Theory ,Mathematics - Abstract
A discrete group which admits a faithful, finite dimensional, linear representation over a field $\mathbb F$ of characteristic zero is called linear. This note combines the natural structure of semi-direct products with work of A. Lubotzky on the existence of linear representations to develop a technique to give sufficient conditions to show that a semi-direct product is linear. Let $G$ denote a discrete group which is a semi-direct product given by a split extension $1 \to \pi \to G \to \Gamma \to 1$. This note defines an additional type of structure for this semi-direct product called a stable extension below. The main results are as follows: 1. If $\pi$ and $\Gamma$ are linear, and the extension is stable, then $G$ is also linear. Restrictions concerning this extension are necessary to guarantee that $G$ is linear as seen from properties of the Formanek-Procesi "poison group". 2. If the action of $\Gamma$ on $\pi$ has a "Galois-like" property that it factors through the automorphisms of certain natural "towers of groups over $\pi$" (to be defined below), then the associated extension is stable and thus $G$ is linear. 3. The condition of a stable extension also implies that $G$ admits filtration quotients which themselves give a natural structure of Lie algebra and which also imply earlier results of Kohno, and Falk-Randell on the Lie algebra attached to the descending central series associated to the fundamental groups of complex hyperplane complements. The methods here suggest that a possible technique for obtaining new linearity results may be to analyze automorphisms of towers of groups., Comment: 26 pages
- Published
- 2007
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137. The Last Vermeer
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Jonathan Lopez and Jonathan Lopez
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- Painters--Netherlands--Biography, Art forgers--Netherlands--Biography
- Abstract
“A grand yarn of twisty deceit, involving prestigious dupes and scads of money, with a sensational trial at the finish.” —The New YorkerIt's a story that made Dutch painter Han van Meegeren world-famous when it broke at the end of World War II: A lifetime of disappointment drove him to forge Vermeers, one of which he sold to Hermann Goering in mockery of the Nazis. And it's a story that's been believed ever since. Too bad it isn't true.Jonathan Lopez has drawn on never-before-seen documents from dozens of archives for this long-overdue unvarnishing of Van Meegeren's legend. Neither unappreciated artist nor antifascist hero, Van Meegeren emerges as an ingenious, dyed-in-the-wool crook. Lopez explores a network of illicit commerce that operated across Europe: Not only was Van Meegeren a key player in that high-stakes game in the 1920s and'30s, landing fakes with famous collectors such as Andrew Mellon, but he and his associates later cashed in on the Nazi occupation.Nominated for an Edgar Award and made into a film starring Guy Pearce, The Last Vermeer is a revelatory biography of the world's most famous forger—a talented Mr. Ripley armed with a paintbrush—and a deliciously detailed story of deceit in the art world.Includes photographs“His pioneering research on van Meegeren's early life gives us further insight into what motivates deception, a subject that will never cease to fascinate as long as art is bought and sold.” —ARTNews“Brings hard light to van Meegeren's machinations and (very bad) character.” —The New Yorker“Fascinating... Lopez's writing is witty, crisp and vigorous, his research scrupulous and his pacing dynamic.” —Publishers Weekly (starred review)“A terrific read.” —Houston Chronicle“It's hard to imagine improving on Lopez's gem of a tale.” —Los Angeles TimesPreviously published as The Man Who Made Vermeers
- Published
- 2009
138. Beyond depression and anxiety; a systematic review about the role of corticotropin-releasing hormone antagonists in diseases of the pelvic and abdominal organs
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Joshua E. Pagán-Busigó, Jonathan López-Carrasquillo, Caroline B. Appleyard, and Annelyn Torres-Reverón
- Subjects
Medicine ,Science - Abstract
Evidence for beneficial effects of corticotropin releasing hormone (CRH) antagonists in abdominal and pelvic organs is emerging in preclinical studies. Following the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) statement a compilation of preclinical studies using CRH receptor antagonists as a treatment for abdominal and pelvic disease was carried out. The Animal Research: Reporting of In Vivo Experiments (ARRIVE) essential 10 guidelines were used to determine quality of the included studies. A total of 40 studies from the last 15 years studying irritable bowel syndrome, inflammatory bowel disease, endometriosis, enteritis, stress impact on gastrointestinal processes and exogenous CRH administration effects were included. Blockage of the CRH receptor 1 was mainly associated with beneficial effects while that of CRH receptor 2 worsened studied effects. However, time of administration, route of administration and the animal model used, all had an impact on the beneficial outcomes. Frequency of drugs administered indicated that astressin-2B, astressin and antalarmin were among the most utilized antagonists. Of concern, studies included were predominantly carried out in male models only, representing a gender discrepancy in preclinical studies compared to the clinical scenario. The ARRIVE score average was 13 with ~60% of the studies failing to randomize or blind the experimental units. Despite the failure to date of the CRH antagonists in moving across the clinical trials pipeline, there is evidence for their beneficial effects beyond mood disorders. Future pre-clinical studies should be tailored towards effectively predicting the clinical scenario, including reduction of bias and randomization.
- Published
- 2022
139. Mutation profiling of thyroid liquid-based fine needle aspirations improves diagnostic accuracy
- Author
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Jonathan Lopez, J.C. Lifante, Marie-Laure Denier, Françoise Descotes, Myriam Decaussin-Petrucci, Véronique Lapras, and Lauriane Depaepe
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Thyroid nodules ,Neuroblastoma RAS viral oncogene homolog ,Pathology ,medicine.medical_specialty ,Suspicious for Malignancy ,medicine.diagnostic_test ,business.industry ,Thyroid ,medicine.disease ,Pathology and Forensic Medicine ,medicine.anatomical_structure ,Fine-needle aspiration ,Mutation (genetic algorithm) ,medicine ,Cancer research ,Atypia ,HRAS ,skin and connective tissue diseases ,business ,neoplasms - Abstract
Fine needle aspiration (FNA) is widely recognized as a reliable diagnostic method to evaluate thyroid nodules. Recently use of molecular biomarkers was proposed to improve pathologic accuracy. We evaluated feasibility and performance of molecular analysis in liquid-based FNA (LB-FNA) with indeterminate cytology. Mutation profiling of NRAS, HRAS and BRAF was performed on residual material from LB-FNA of 215 cases including 83 atypia of undetermined significance (AUS), 72 follicular neoplasms (FN), 46 suspicious for malignancy (SM), and 14 malignant (M). Forty-eight (22%) cases were mutated. Twenty-four cases presented a RAS mutation (19 NRAS and 5 HRAS) (11 AUS, 6 FN, and 7 SM) and 24 were carrying a BRAF mutation (1FN, 11 SM, and 12M). Surgical samples were available for 38 cases: 3 AUS, 14 FN, 13 SM and 8M. In the AUS category, 1 was a papillary carcinoma (PC) with NRAS mutation and 2 were benign (1 with NRAS mutation). In the FN category, 3 were malignant (1 with BRAF and 1 with HRAS mutation) and 11 benign (1 with HRAS and 1 with NRAS mutation). In the SM group, 10 were PC (3 with NRAS mutation and 5 with BRAF mutation) and 3 benign (no mutation). In the M group, all were PC with BRAF mutation. In conclusion, mutation profiling of BRAF and RAS can be successfully performed on residual material of thyroid LB-FNA and could improve the diagnostic accuracy of FNA.
- Published
- 2014
140. The Eyes Have It! The Significance of Unilateral Ptosis
- Author
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Paul G. Fisher and Jonathan Lopez
- Subjects
medicine.medical_specialty ,Horner Syndrome ,business.industry ,MEDLINE ,Surgery ,Pediatrics, Perinatology and Child Health ,Blepharoptosis ,Humans ,Medicine ,Female ,Child ,business ,Spinal Cord Injuries ,Unilateral ptosis - Published
- 2012
141. 74: Development of a novel membrane-active peptide with apoptosis-inducing activity and potent anticancer effect
- Author
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Jérôme Kucharczak, Lucie Sancey, Jesús Salgado, Jean-Luc Coll, Aouacheria Abdel, Juan Garcia Valero, Abdel Aouacheri, Jonathan Lopez, and Yannis Guillemin
- Subjects
chemistry.chemical_classification ,Cancer Research ,Membrane ,Oncology ,chemistry ,Apoptosis ,Radiology, Nuclear Medicine and imaging ,Peptide ,Hematology ,General Medicine ,Cell biology - Published
- 2010
142. Active Fragments from Pro- and Antiapoptotic BCL-2 Proteins Have Distinct Membrane Behavior Reflecting Their Functional Divergence
- Author
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Gustavo Fuertes, Juan G. Valero, Yannis Guillemin, Agnès Girard-Egrot, Jonathan Lopez, Jesús Salgado, Philippe Gonzalo, Diana Gimenez, Loïc J. Blum, Abdel Aouacheria, Institut de biologie et chimie des protéines [Lyon] (IBCP), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS), Departamento de Geologica y Geoquimica, Universidad Autónoma de Madrid (UAM), Centre de recherche en linguistique et traitement automatique des langues, Lucien Tesnière - UFC (EA 2283) (TESNIERE), Université de Franche-Comté (UFC), Université Bourgogne Franche-Comté [COMUE] (UBFC)-Université Bourgogne Franche-Comté [COMUE] (UBFC), Laboratoire de Biométrie et Biologie Evolutive - UMR 5558 (LBBE), Université de Lyon-Université de Lyon-Institut National de Recherche en Informatique et en Automatique (Inria)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Centre National de la Recherche Scientifique (CNRS), and Universidad Autonoma de Madrid (UAM)
- Subjects
Membrane lipids ,Lipid Bilayers ,Molecular Sequence Data ,bcl-X Protein ,lcsh:Medicine ,Apoptosis ,Biology ,Cell Line ,Protein–protein interaction ,Membrane Lipids ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Protein structure ,Membrane activity ,Animals ,Humans ,Amino Acid Sequence ,[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biochemistry [q-bio.BM] ,lcsh:Science ,Lipid bilayer ,Inner mitochondrial membrane ,bcl-2-Associated X Protein ,030304 developmental biology ,Mice, Knockout ,Microscopy ,0303 health sciences ,Multidisciplinary ,Sequence Homology, Amino Acid ,lcsh:R ,Cytochromes c ,Cell Biology/Cellular Death and Stress Responses ,Fibroblasts ,Peptide Fragments ,Mitochondria ,Cell biology ,Biochemistry/Molecular Evolution ,Membrane protein ,Biophysics/Membrane Proteins and Energy Transduction ,lcsh:Q ,Hydrophobic and Hydrophilic Interactions ,030217 neurology & neurosurgery ,Functional divergence ,Research Article ,BH3 Interacting Domain Death Agonist Protein ,Protein Binding - Abstract
International audience; BACKGROUND:The BCL-2 family of proteins includes pro- and antiapoptotic members acting by controlling the permeabilization of mitochondria. Although the association of these proteins with the outer mitochondrial membrane is crucial for their function, little is known about the characteristics of this interaction.METHODOLOGY/PRINCIPAL FINDINGS:Here, we followed a reductionist approach to clarify to what extent membrane-active regions of homologous BCL-2 family proteins contribute to their functional divergence. Using isolated mitochondria as well as model lipid Langmuir monolayers coupled with Brewster Angle Microscopy, we explored systematically and comparatively the membrane activity and membrane-peptide interactions of fragments derived from the central helical hairpin of BAX, BCL-xL and BID. The results show a connection between the differing abilities of the assayed peptide fragments to contact, insert, destabilize and porate membranes and the activity of their cognate proteins in programmed cell death.CONCLUSION/SIGNIFICANCE:BCL-2 family-derived pore-forming helices thus represent structurally analogous, but functionally dissimilar membrane domains.
- Published
- 2010
143. Oriundos y peregrinos
- Author
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Jonathan López-Romo
- Subjects
Oriundos ,peregrinos ,Exilio español ,migrantes asturianos ,relación entre España y México ,Law ,Architecture ,NA1-9428 ,Social Sciences - Abstract
Como punto de partida, el texto ocupa dos palabras complementarias: oriundos y peregrinos, para transitar en dos tipos de migración que realizaron los españoles a México en el siglo XX, en dos obras diversas: Oriundos de Fernando Fernández y el facsímil de la revista España peregrina. El texto lleva a viajar y pensar un pasado compartido, casi desconocido en la actualidad, en el que la dualidad migración-escape permea la relación entre México y España durante el siglo XX con la efeméride de los 80 años del exilio español como señal cultural.
- Published
- 2020
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144. Utilidad del monitoreo ambulatorio de la presión arterial de 24 horas en una población con alto riesgo cardiovascular
- Author
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Orlando D. Navarro-Ulloa, Yelson A. Picón-Jaimes, Giancarlos Conde-Cardona, Luis J. Fernández-Yépez, Carmen I. Zabala-Carballo, Jonathan López-García, Angélica M. Gómez-Hernández, Javier E. Orozco-Chinome, and Luis Moscote-Salazar
- Subjects
Cardiología. Diagnóstico. Enfermedades cardiovasculares. Enfermedades vasculares. Hipertensión. Presión sanguínea. ,Surgery ,RD1-811 - Abstract
Antecedentes: La hipertensión arterial es considerada una enfermedad y al mismo tiempo un factor de riesgo cardiovascular, involucrada principalmente en la cardiopatía isquémica, la enfermedad cerebrovascular y la insuficiencia renal, causando una elevada mortalidad. Objetivo: Realizar seguimiento con monitoreo ambulatorio de la presión arterial de 24 horas en pacientes con hipertensión arterial pertenecientes a una población con alto riesgo cardiovascular. Método: Estudio descriptivo, observacional, retrospectivo, en el que se analizaron los monitoreos ambulatorios de presión de 24 horas de 1858 pacientes, en Cartagena, Colombia. Resultados: Se incluyeron 1173 registros. La mediana de edad fue de 66 años. El 66.8% (783) fueron mujeres y el 33.2% (390) fueron hombres. Las principales alteraciones ocurrieron durante la noche, cuando el 79.1% de los pacientes tuvieron cargas elevadas de presión sistólica, el 65.6% registraron promedios elevados de presión diastólica y el 83.7% tuvieron patrones circadianos anormales. Solo el 11% de los estudios fueron normales en todos los parámetros. Conclusiones: El monitoreo ambulatorio de la presión arterial de 24 horas demostró ser una herramienta útil para identificar a los pacientes hipertensos no controlados, detectando hipertensión nocturna y patrones circadianos anormales, los cuales son marcadores de riesgo para morbilidad y mortalidad cardiovascular.
- Published
- 2020
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145. Psychosocial Well-Being and HIV-Related Immune Health Outcomes among HIV-Positive Older Adults: Support for a Biopsychosocial Model of HIV Stigma and Health
- Author
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H. Jonathon Rendina PhD, MPH, Laurel Weaver MA, Brett M. Millar PhD, Jonathan López-Matos MA, and Jeffrey T. Parsons PhD
- Subjects
Diseases of the genitourinary system. Urology ,RC870-923 - Abstract
Evidence suggests that psychosocial stress negatively impacts immunological health in HIV-positive individuals. However, few studies have explored this association in substance-using older adults living with HIV (OALWH). We evaluated the effect of depression, loneliness, substance use problems, and HIV stigma on primary markers of immune function in a sample of 120 OALWH with substance-related issues. HIV stigma correlated with the greatest number of factors, including depression, loneliness, and substance use problems. Older age and antiretroviral adherence were associated with viral suppression, which was in turn associated with higher percentage of CD4 count. Multivariate path analyses demonstrated that lower HIV stigma and viral suppression were the only factors independently associated with higher percentage of CD4 count, with a significant indirect effect of adherence on CD4 through viral suppression. HIV stigma emerged as the most salient factor associated with both psychosocial well-being and immune health in the current study, suggesting that it is a critical factor to consider in future interventions for the rapidly growing population of OALWH.
- Published
- 2019
- Full Text
- View/download PDF
146. Apparent False Lateralization of Seizure Onset by Scalp EEG in Temporal Lobe Epilepsy Associated with Cerebral Cavernous Malformation: A Case Report and Overview
- Author
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Mariana Gaviria Carrillo, Jonathan López, Jesús H. Rodríguez Q., Ivan Gaona, Gloria Ortiz-Guerrero, and Mauricio O. Nava-Mesa
- Subjects
cavernoma ,false lateralization ,epilepsy surgery ,scalp EEG ,refractory epilepsy ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
False lateralization of ictal onset by scalp electroencephalogram (EEG) is an infrequent entity that has been reported in patients with mesial temporal lobe epilepsy associated with hippocampal sclerosis (HS). In these cases, a tendency for rapid seizures that spread through the frontal-limbic system and hippocampal commissural pathways to the contralateral hemisphere has been proposed. Cerebral cavernous malformations (CCMs), which constitute a collection of abnormally configured small blood vessels with irregular structures, is a well-defined epilepsy-associated pathology. Their primary association with seizures might be explained either as a result of physiological changes affecting the cerebral cortex immediately surrounding the CCM (an epileptogenic mechanism that is relevant for both, temporal and extratemporal lesions) or as a result of promoting epileptogenicity in remote but anatomo-functionally connected brain regions, a mechanism that is particularly relevant for temporal lobe lesions. To date, there have been only two publications on falsely lateralizing ictal onsets by EEG in temporal cavernoma, but not in other regions. Here, we report a rare case of apparent false lateralization of ictal onset by scalp EEG in a patient with a left medial frontal gyrus cavernoma (supplementary motor area), and discuss some relevant pathophysiological mechanisms of false lateralization.
- Published
- 2020
- Full Text
- View/download PDF
147. Adaptation of a Couple-Based HIV/STI Prevention Intervention for Latino Men Who Have Sex With Men in New York City
- Author
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Omar Martinez JD, MPH, MS, Elwin Wu PhD, Timothy Frasca MPH, Andrew Zach Shultz MA, M. Isabel Fernandez PhD, Javier López Rios MPH(c), Hugo Ovejero JD, Eva Moya PhD, LMSW, Silvia Chavez Baray PhD, Jonathan Capote, Justin Manusov, Chukwuemeka O. Anyamele MD, Jonathan López Matos MPH(c), John Satchel Horatio Page LMSW, Alex Carballo-Diéguez PhD, and Theo G. M. Sandfort PhD
- Subjects
Medicine - Abstract
Predominantly Spanish-speaking Latino men who have sex with men (MSM) and their same-sex partners continue to be at high risk for HIV and STIs. Behavioral research has identified how relationship dynamics for male couples are associated with sexual risk behavior. Connect ‘n Unite (CNU), an evidence-based HIV/STI prevention intervention originally created for Black MSM and their same-sex partners, was adapted for predominantly Spanish-speaking Latino MSM and their same-sex partners on the assumption that its key elements would be translatable while its efficacy would be retained. A systematic adaptation process utilizing qualitative methods was used, including intervention adaptation sessions with 20 predominantly Spanish-speaking Latino gay couples and 10 health service providers. The process included five steps: (1) engaging community stakeholders, (2) capturing the lived experiences of Latino gay couples, (3) identifying intervention priorities, (4) integrating the original intervention’s social cognitive theory into a relationship-oriented, ecological framework for Latino gay couples, and (5) adapting intervention activities and materials. The adapted intervention, which we called Latinos en Pareja or Latinos in a Relationship, incorporates elements that effective HIV prevention interventions share, including: a solid theoretical foundation; emphasis on increasing risk reduction norms, sexual communication skills and social support for protection; and guidance on how to utilize available, culturally and linguistically appropriate services. The systematic adaptation approach used for a couples-based HIV prevention intervention also can be employed by other researchers and community stakeholders to adapt evidence-based interventions that promote wellness, linkage to care, and disease prevention for populations not originally targeted.
- Published
- 2017
- Full Text
- View/download PDF
148. Untitled.
- Author
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Greenwood, Jonathan Lopez Al
- Subjects
INTERNATIONAL trade disputes ,MONETARY unions ,SHALE gas ,COMMERCIAL products - Published
- 2019
149. Castelli's life and influence on modern art.
- Author
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Jonathan Lopez
- Published
- 2010
150. Chronicling a grand diamond heist.
- Author
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Jonathan Lopez
- Published
- 2010
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