112 results on '"Li, Pei-Lin"'
Search Results
102. Quantitation of Simian Cytokine and β-Chemokine mRNAs, Using Real-Time Reverse Transcriptase-Polymerase Chain Reaction: Variations in Expression during Chronic Primate Lentivirus Infection
- Author
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Hofmann-Lehmann, Regina, Williams, Alison L., Swenerton, Ryan K., Li, Pei-Lin, Rasmussen, Robert A., Chenine, Agnès-Laurence, McClure, Harold M., and Ruprecht, Ruth M.
- Abstract
Cytokines and β-chemokines are important mediators of the immune system and are expressed in many infectious diseases. To study cytokine and β-chemokine profiles during pathogenesis of lentiviral infection and progression to AIDS in rhesus macaques, we established new quantitative real-time reverse transcriptase-polymerase chain reaction (RT-PCR) assays based on TaqMan chemistry. Using synthetic RNA standards, we quantified mRNAs of IL-2, IL-4, IL-6, IL-10, IL-12 p40, interferon γ (IFN-γ), tumor necrosis factor α (TNF-α), RANTES, macrophage inflammatory protein 1α (MIP-1α), and MIP-1β in unstimulated peripheral blood mononuclear cells (PBMCs) and lymph nodes from macaques chronically infected with SIV or SHIV. Viremic monkeys with decreased CD4+ T cell counts (<500 cells/μl) had significantly higher IL-10 mRNA expression than uninfected controls, which parallels the findings in HIV-1-infected humans. In addition, MIP-1α, MIP-1β, and RANTES mRNA expression increased in viremic monkeys with decreased CD4+ T cell counts; gene expression was inversely correlated with CD4+ T cell counts, but not viral load. The newly established quantitative real-time RT-PCR assays will allow the determination of cytokine and β-chemokine patterns in rhesus macaques in studies of microbial pathogenesis or vaccine development.
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- 2002
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103. Molecular Evolution of Human Immunodeficiency Virus envin Humans and Monkeys: Similar Patterns Occur during Natural Disease Progression or Rapid Virus Passage
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Hofmann-Lehmann, Regina, Vlasak, Josef, Chenine, Agne`s-Laurence, Li, Pei-Lin, Baba, Timothy W., Montefiori, David C., McClure, Harold M., Anderson, Daniel C., and Ruprecht, Ruth M.
- Abstract
ABSTRACTNeonatal rhesus macaque 95-3 was inoculated with nonpassaged simian-human immunodeficiency virus strain SHIV-vpu+, which encodes envof the laboratory-adapted human immunodeficiency virus (HIV) strain IIIB and is considered nonpathogenic. CD4+T-cell counts dropped to <200 cells/µl within 4.6 years, and monkey 95-3 died with opportunistic infections 5.9 years postinoculation. Transfer of blood from 95-3 to two naive adult macaques resulted in high peak viral loads and rapid, persistent T-cell depletion. Progeny virus evolved in 95-3 despite high SHIV-vpu+neutralizing antibody titers and still used CXCR4 but, in contrast to parental SHIV-vpu+, productively infected macrophages and resisted neutralization. Sequence analysis revealed three new potential glycosylation sites in gp120; another two were lost. Strikingly similar mutations were detected in a laboratory worker who progressed to AIDS after accidental HIV-IIIB infection (T. Beaumont et al., J. Virol. 75:2246-2252, 2001), thus supporting the SHIV-vpu+/rhesus macaque system as a relevant model. Similar mutations were also described after rapid passage of chimeric viruses encoding IIIB envin rhesus and pig-tailed macaques (M. Cayabyab et al., J. Virol. 73:976-984, 1999; Z. Q. Liu et al., Virology 260:295-307, 1999; S. V. Narayan et al., Virology 256:54-63, 1999; R. Raghavan et al., Brain Pathol. 7:851-861, 1997; E. B. Stephens et al., Virology 231:313-321, 1997). Thus, HIV-IIIB envevolved similarly in three different species; this selection occurred in chronically infected individuals during disease progression as well as after rapid virus passage. We postulate that evolutionary pressure led to the outgrowth of more aggressive viral variants in all three species.
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- 2002
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104. Study on citrus fruit image using fisher linear discriminant analysis
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Sang-Heon Lee, Peilin Li, Hung-Yao Hsu, Li, Pei Lin, Lee, Sang-Heon, Hsu, Hung Yao, and 2011 IEEE International Conference on Computer Science and Automation Engineering (CSAE) Shanghai, China 10-12 June 2011
- Subjects
NIR (near infrared) ,Cold mirror ,Machine vision ,Computer science ,business.industry ,Multispectral image ,ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION ,cold mirror ,VIS (visible) ,Linear discriminant analysis ,Convolution ,k-nearest neighbors algorithm ,Set (abstract data type) ,color index ,FLDA (fisher linear discriminany analysis) ,Identification (information) ,Computer vision ,Artificial intelligence ,business ,CCD - Abstract
In automatic fruit harvesting system, the method of fruit identification by using machine vision has been researched underway for years. The ultimate objective of this project is to extend a ripeness study on the citrus fruit image data and the identification methodologies by multispectral analysis for fruit picking robot. To acquire the combination of the citrus fruit image data, a cold mirror acquisition system has been prototyped to align two CCD cameras with a classical cold mirror on a custom built fixture. The use of the cold mirror system is an attempt to capture both images without registration at the same view by triggering and synchronizing two cameras. With flexible interchangeability, some physical optical filters have been interchanged on the cameras to capture the combination of the citrus image data. In this part of study, Fisher linear discriminate analysis has been used on the natural citrus image data to discuss the probability of the identification on the image by modifying the image data. In the process, the component of the visible image is selected as the dominating component based on the spectral contrast between the ripe colored citrus fruit and the background. The second component from certain near infrared spectral area is selectable to be combined with the visible component by convolution. In FLDA, the major eigenvector is found as the projection direction uniquely from the data sets of the fruit and the background. On top of the information from FLDA, the classification on the fruit set and the background set is performed by the nearest neighbor estimation in the lower dimensional space on different schemes of the image data. By comparing with some other color indices methods, the overall outcome by FLDA gives a better identification result on all sampling image data with small estimation error. Refereed/Peer-reviewed
- Published
- 2011
105. [Establishment and Evaluation Strategy of an in vitro Cell Model of Bone Marrow Microenvironment Injury in Mouse Acute Graft-Versus-Host Disease].
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Tian JY, Li PL, Tang J, Xu RX, Yin BF, Wang FY, Li XT, Ning HM, Zhu H, and Ding L
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- Animals, Mice, Female, Bone Marrow Cells cytology, Cellular Microenvironment, Bone Marrow, Rats, Graft vs Host Disease, Mesenchymal Stem Cells cytology, Mice, Inbred BALB C, Mice, Inbred C57BL, Disease Models, Animal, Bone Marrow Transplantation
- Abstract
Objective: To establish a mesenchymal stem cell(MSC)-based in vitro cell model for the evaluation of mouse bone marrow acute graft-versus-host disease (aGVHD)., Methods: Female C57BL/6N mice aged 6-8 weeks were used as bone marrow and lymphocyte donors, and female BALB/c mice aged 6-8 weeks were used as aGVHD recipients. The recipient mouse received a lethal dose (8.0 Gy,72.76 cGy/min) of total body γ irradiation, and injected with donor mouse derived bone marrow cells (1×10
7 /mouse) in 6-8 hours post irradiation to establish a bone marrow transplantation (BMT) mouse model ( n =20). In addition, the recipient mice received a lethal dose (8.0 Gy,72.76 cGy/min) of total body γ irradiation, and injected with donor mouse derived bone marrow cells (1×107 /mouse) and spleen lymphocytes (2×106 /mouse) in 6-8 hours post irradiation to establish a mouse aGVHD model ( n =20). On the day 7 after modeling, the recipient mice were anesthetized and the blood was harvested post eyeball enucleation. The serum was collected by centrifugation. Mouse MSCs were isolated and cultured with the addition of 2%, 5%, and 10% recipient serum from BMT group or aGVHD group respectively. The colony-forming unit-fibroblast(CFU-F) experiment was performed to evaluate the potential effects of serums on the self-renewal ability of MSC. The expression of CD29 and CD105 of MSC was evaluated by immunofluorescence staining. In addition, the expression of self-renewal-related genes including Oct-4 , Sox-2 , and Nanog in MSC was detected by real-time fluorescence quantitative PCR(RT-qPCR)., Results: We successfully established an in vitro cell model that could mimic the bone marrow microenvironment damage of the mouse with aGVHD. CFU-F assay showed that, on day 7 after the culture, compared with the BMT group, MSC colony formation ability of aGVHD serum concentrations groups of 2% and 5% was significantly reduced ( P < 0.05); after the culture, at day 14, compared with the BMT group, MSC colony formation ability in different aGVHD serum concentration was significantly reduced ( P < 0.05). The immunofluorescence staining showed that, compared with the BMT group, the proportion of MSC surface molecules CD29+ and CD105+ cells was significantly dereased in the aGVHD serum concentration group ( P < 0.05), the most significant difference was at a serum concentration of 10% ( P < 0.001, P < 0.01). The results of RT-qPCR detection showed that the expression of the MSC self-renewal-related genes Oct-4 , Sox-2 , and Nanog was decreased, the most significant difference was observed at an aGVHD serum concentration of 10% ( P < 0.01, P < 0.001, P < 0.001)., Conclusion: By co-culturing different concentrations of mouse aGVHD serum and mouse MSC, we found that the addition of mouse aGVHD serum at different concentrations impaired the MSC self-renewal ability, which providing a new tool for the field of aGVHD bone marrow microenvironment damage.- Published
- 2024
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106. Microgel-based carriers enhance skeletal stem cell reprogramming towards immunomodulatory phenotype in osteoarthritic therapy.
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Li PL, Chen DF, Li XT, Hao RC, Zhao ZD, Li ZL, Yin BF, Tang J, Luo YW, Wu CT, Nie JJ, and Zhu H
- Abstract
Skeletal stem cells (SSC) have gained attentions as candidates for the treatment of osteoarthritis due to their osteochondrogenic capacity. However, the immunomodulatory properties of SSC, especially under delivery operations, have been largely ignored. In the study, we found that Pdpn
+ and Grem1+ SSC subpopulations owned immunoregulatory potential, and the single-cell RNA sequencing (scRNA-seq) data suggested that the mechanical activation of microgel carriers on SSC induced the generation of Pdpn+ Grem1+ Ptgs2+ SSC subpopulation, which was potent at suppressing macrophage inflammation. The microgel carriers promoted the YAP nuclear translocation, and the activated YAP protein was necessary for the increased expression of Ptgs2 and PGE2 in microgels-delivered SSC, which further suppressed the expression of TNF-ɑ, IL-1β and promoted the expression of IL-10 in macrophages. SSC delivered with microgels yielded better preventive effects on articular lesions and macrophage activation in osteoarthritic rats than SSC without microgels. Chemically blocking the YAP and Ptgs2 in microgels-delivered SSC partially abolished the enhanced protection on articular tissues and suppression on osteoarthritic macrophages. Moreover, microgel carriers significantly prolonged SSC retention time in vivo without increasing SSC implanting into osteoarthritic joints. Together, our study demonstrated that microgel carriers enhanced SSC reprogramming towards immunomodulatory phenotype to regulate macrophage phenotype transformation for effectively osteoarthritic therapy by promoting YAP protein translocation into nucleus. The study not only complement and perfect the immunological mechanisms of SSC-based therapy at the single-cell level, but also provide new insight for microgel carriers in stem cell-based therapy., (© 2023 The Authors.)- Published
- 2023
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107. [Establishment and Evaluation of Intestinal Injury Model of Mouse Acute Graft Versus Host Disease Based on An Organoid Technology].
- Author
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Han MY, Li PL, Yin BF, Li ZL, Hao RC, Li XT, Wang FY, Tian JY, Ding L, Ning HM, Wu WQ, and Zhu H
- Subjects
- Mice, Female, Animals, Mice, Inbred C57BL, Stem Cells, Organoids, Bone Marrow Transplantation, Graft vs Host Disease
- Abstract
Objective: To establish an intestinal organoid model that mimic acute graft versus host disease (aGVHD) caused intestinal injuries by using aGVHD murine model serum and organoid culture system, and explore the changes of aGVHD intestine in vitro by advantage of organoid technology., Methods: 20-22 g female C57BL/6 mice and 20-22 g female BALB/c mice were used as donors and recipients for bone marrow transplantation, respectively. Within 4-6 h after receiving a lethal dose (8.0 Gy) of γ ray total body irradiation, a total of 0.25 ml of murine derived bone marrow cells (1×10
7 /mice, n =20) and spleen nucleated cells (5×106 /mice, n =20) was infused to establish a mouse model of aGVHD ( n =20). The aGVHD mice were anesthetized at the 7th day after transplantation, and the veinal blood was harvested by removing the eyeballs, and the serum was collected by centrifugation. The small intestinal crypts of healthy C57BL/6 mice were harvested and cultivated in 3D culture system that maintaining the growth and proliferation of intestinal stem cells in vitro. In our experiment, 5%, 10%, 20% proportions of aGVHD serum were respectively added into the organoid culture system for 3 days. The formation of small intestinal organoids were observed under an inverted microscope and the morphological characteristics of intestinal organoids in each groups were analyzed. For further evaluation, the aGVHD intestinal organoids were harvested and their pathological changes were observed. Combined with HE staining, intestinal organ morphology evaluation was performed. Combined with Alcian Blue staining, the secretion function of aGVHD intestinal organoids was observed. The distribution and changes of Lgr5+ and Clu+ intestinal stem cells in intestinal organoids were analyzed under the conditions of 5%, 10% and 20% serum concentrations by immunohistochemical stainings., Results: The results of HE staining showed that the integrity of intestinal organoids in the 5% concentration serum group was better than that in the 10% and 20% groups. The 5% concentration serum group showed the highest number of organoids, the highest germination rate and the lowest pathological score among experimental groups, while the 20% group exhibited severe morphological destruction and almost no germination was observed, and the pathological score was the highest among all groups( t =3.668, 4.334,5.309, P <0.05). The results of Alican blue staining showed that the secretion function of intestinal organoids in serum culture of aGVHD in the 20% group was weaker than that of the 5% group and 10% of the organoids, and there was almost no goblet cells, and mucus was stainned in the 20% aGVHD serum group. The immunohistochemical results showed that the number of Lgr5+ cells of intestinal organoids in the 5% group was more than that of the intestinal organoids in the 10% aGVHD serum group and 20% aGVHD serum group. Almost no Clu+ cells were observed in the 5% group. The Lgr5+ cells in the 20% group were seriously injuried and can not be observed. The proportion of Clu+ cells in the 20% group significantly increased., Conclusion: The concentration of aGVHD serum in the culture system can affect the number and secretion function of intestinal organoids as well as the number of intestinal stem cells in organoids. The higher the serum concentration, the greater the risk of organoid injury, which reveal the characteristics of the formation and functional change of aGVHD intestinal organoids, and provide a novel tool for the study of intestinal injury in aGVHD.- Published
- 2023
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108. [The Advance of the HSCT Evaluation at Single-Cell Scale --Review].
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Tang J, Li XT, Li PL, and Zhu H
- Abstract
Hematopoietic stem cell transplantation (HSCT) is one of the effective options for the treatment of irradiation-induced injury on hematopoiesis, malignant hematological diseases, and numerous benign severe hematopathy. However, the cellular composition of the graft for HSCT, as well as the significant events of transplanted HSCs in receipients including HSC homing, engraftment, differentiation, remains to be further elucidated. In recent years, with advances in single-cell techniques, the hematopoiesis has been decoding at single cell scale. In addition, single-cell RNA sequencing (scRNA-seq) has been used in the evaluation of hematopoietic dynamics post HSCT, which may be helpful to improve HSCT protocols and clinical outcomes. Hence, the recent advances of evaluating HSCT at single cell scale and the directions worthy paying attention to in the field have been reviewed briefly.
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- 2023
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109. [Research Advances in Plasticity of Biological Characteristics of Mesenchymal Stem Cells--Review].
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Li PL and Zhu H
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- Wound Healing, Mesenchymal Stem Cell Transplantation, Mesenchymal Stem Cells
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Mesenchymal stem cells (MSC) are capable of supporting hematopoiesis, regulating immune responses, promoting tissue regeneration and homing to damaged tissues, but their efficacy cannot completely exploit due to various factors. Studies in recent years have shown that the biological characteristics of mesenchymal stem cells have plasticity. Researchers can enhance the biological performance of MSC by pretreatment with hypoxia, bioactive molecules, genetic modification, and mechanical stimulation, as well as adjusting MSC transplantation strategies, which has great significance for promoting the transformation of MSC. Therefore, in this review, the recent research advances in the plasticity of the biological characteristics of MSC are summarized briefly.
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- 2021
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110. Medical Knowledge Extraction and Analysis from Electronic Medical Records Using Deep Learning.
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Li PL, Yuan ZM, Tu WN, Yu K, and Lu DX
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- Humans, Models, Theoretical, Natural Language Processing, Deep Learning, Electronic Health Records
- Abstract
Objectives Medical knowledge extraction (MKE) plays a key role in natural language processing (NLP) research in electronic medical records (EMR), which are the important digital carriers for recording medical activities of patients. Named entity recognition (NER) and medical relation extraction (MRE) are two basic tasks of MKE. This study aims to improve the recognition accuracy of these two tasks by exploring deep learning methods. Methods This study discussed and built two application scenes of bidirectional long short-term memory combined conditional random field (BiLSTM-CRF) model for NER and MRE tasks. In the data preprocessing of both tasks, a GloVe word embedding model was used to vectorize words. In the NER task, a sequence labeling strategy was used to classify each word tag by the joint probability distribution through the CRF layer. In the MRE task, the medical entity relation category was predicted by transforming the classification problem of a single entity into a sequence classification problem and linking the feature combinations between entities also through the CRF layer. Results Through the validation on the I2B2 2010 public dataset, the BiLSTM-CRF models built in this study got much better results than the baseline methods in the two tasks, where the F1-measure was up to 0.88 in NER task and 0.78 in MRE task. Moreover, the model converged faster and avoided problems such as overfitting. Conclusion This study proved the good performance of deep learning on medical knowledge extraction. It also verified the feasibility of the BiLSTM-CRF model in different application scenarios, laying the foundation for the subsequent work in the EMR field.
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- 2019
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111. [Clinical significance of glycosylated serum protein in patients with diabetic nephropathy].
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Li PL, Yang R, Zhou Y, Chen H, and Cai DH
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- Adult, Aged, Aged, 80 and over, Case-Control Studies, Diabetes Mellitus, Type 2 blood, Female, Humans, Male, Middle Aged, Serum metabolism, Glycated Serum Proteins, Blood Glucose analysis, Blood Proteins analysis, Diabetic Nephropathies blood, Glycated Hemoglobin analysis, Glycoproteins analysis
- Abstract
Objective: To explore the relations between fasting blood glucose (FBG), glycosylated hemoglobin A1c (HbA1c) and glycosylated serum protein (GSP)., Methods: FBG, HbA1c and GSP were measured in 303 patients with diabetic nephropathy and in 167 non-diabetic patients with comparable baseline data, and the correlations between FBG, HbA1c and GSP were analyzed., Results: GSP levels were significantly higher in patients with diabetic nephropathy than in the non-diabetic patients (P<0.01). In patients with diabetic nephropathy, GSP levels were found to positively correlate to FBG (r=0.606) and HbA1c (r=0.733)., Conclusion: Patients with diabetic nephropathy show strong correlations between FBG, HbA1c and GSP. GSP detection is convenient, stable, and practical in evaluating the average FBG over a short term, which reduces the interference by FBG fluctuations in conventional blood glucose monitoring.
- Published
- 2011
112. Quantitation of simian cytokine and beta-chemokine mRNAs, using real-time reverse transcriptase-polymerase chain reaction: variations in expression during chronic primate lentivirus infection.
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Hofmann-Lehmann R, Williams AL, Swenerton RK, Li PL, Rasmussen RA, Chenine AL, McClure HM, and Ruprecht RM
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- Animals, CD4 Lymphocyte Count, Chemokine CCL3, Chemokine CCL4, Chemokines, CC genetics, Cytokines genetics, Disease Progression, Gene Expression, Interleukin-10 analysis, Interleukin-10 genetics, Leukocytes, Mononuclear metabolism, Lymph Nodes cytology, Lymph Nodes metabolism, Macaca mulatta, Macrophage Inflammatory Proteins genetics, RNA, Messenger analysis, RNA, Messenger biosynthesis, Reverse Transcriptase Polymerase Chain Reaction, Simian Acquired Immunodeficiency Syndrome immunology, Viral Load, Chemokines, CC analysis, Cytokines analysis, Lentiviruses, Primate, Simian Acquired Immunodeficiency Syndrome metabolism
- Abstract
Cytokines and beta-chemokines are important mediators of the immune system and are expressed in many infectious diseases. To study cytokine and beta-chemokine profiles during pathogenesis of lentiviral infection and progression to AIDS in rhesus macaques, we established new quantitative real-time reverse transcriptase-polymerase chain reaction (RT-PCR) assays based on TaqMan chemistry. Using synthetic RNA standards, we quantified mRNAs of IL-2, IL-4, IL-6, IL-10, IL-12 p40, interferon gamma (IFN-gamma), tumor necrosis factor alpha (TNF-alpha), RANTES, macrophage inflammatory protein 1 alpha (MIP-1 alpha), and MIP-1 beta in unstimulated peripheral blood mononuclear cells (PBMCs) and lymph nodes from macaques chronically infected with SIV or SHIV. Viremic monkeys with decreased CD4(+) T cell counts (<500 cells/microl) had significantly higher IL-10 mRNA expression than uninfected controls, which parallels the findings in HIV-1-infected humans. In addition, MIP-1 alpha, MIP-1 beta, and RANTES mRNA expression increased in viremic monkeys with decreased CD4(+) T cell counts; gene expression was inversely correlated with CD4(+) T cell counts, but not viral load. The newly established quantitative real-time RT-PCR assays will allow the determination of cytokine and beta-chemokine patterns in rhesus macaques in studies of microbial pathogenesis or vaccine development.
- Published
- 2002
- Full Text
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