1,392 results on '"Masuda, Naoki"'
Search Results
102. Division of labour promotes the spread of information in colony emigrations by the ant Temnothorax rugatulus
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Valentini, Gabriele, Masuda, Naoki, Shaffer, Zachary, Hanson, Jake R., Sasaki, Takao, Walker, Sara Imari, Pavlic, Theodore P., and Pratt, Stephen C.
- Published
- 2020
103. Random walks and diffusion on networks
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Masuda, Naoki, Porter, Mason A., and Lambiotte, Renaud
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Physics - Physics and Society ,Condensed Matter - Disordered Systems and Neural Networks ,Computer Science - Social and Information Networks - Abstract
Random walks are ubiquitous in the sciences, and they are interesting from both theoretical and practical perspectives. They are one of the most fundamental types of stochastic processes; can be used to model numerous phenomena, including diffusion, interactions, and opinions among humans and animals; and can be used to extract information about important entities or dense groups of entities in a network. Random walks have been studied for many decades on both regular lattices and (especially in the last couple of decades) on networks with a variety of structures. In the present article, we survey the theory and applications of random walks on networks, restricting ourselves to simple cases of single and non-adaptive random walkers. We distinguish three main types of random walks: discrete-time random walks, node-centric continuous-time random walks, and edge-centric continuous-time random walks. We first briefly survey random walks on a line, and then we consider random walks on various types of networks. We extensively discuss applications of random walks, including ranking of nodes (e.g., PageRank), community detection, respondent-driven sampling, and opinion models such as voter models., Comment: 12 figures, 2 tables; [v3] reflects the corrections we made in the two corrigenda (Physics Reports, 745, 96 (2018) and ibid., 851, 37-39 (2020))
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- 2016
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104. Energy landscape analysis of neuroimaging data
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Ezaki, Takahiro, Watanabe, Takamitsu, Ohzeki, Masayuki, and Masuda, Naoki
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Quantitative Biology - Neurons and Cognition ,Condensed Matter - Statistical Mechanics ,Physics - Data Analysis, Statistics and Probability - Abstract
Computational neuroscience models have been used for understanding neural dynamics in the brain and how they may be altered when physiological or other conditions change. We review and develop a data-driven approach to neuroimaging data called the energy landscape analysis. The methods are rooted in statistical physics theory, in particular the Ising model, also known as the (pairwise) maximum entropy model and Boltzmann machine. The methods have been applied to fitting electrophysiological data in neuroscience for a decade, but their use in neuroimaging data is still in its infancy. We first review the methods and discuss some algorithms and technical aspects. Then, we apply the methods to functional magnetic resonance imaging data recorded from healthy individuals to inspect the relationship between the accuracy of fitting, the size of the brain system to be analyzed, and the data length., Comment: 22 pages, 4 figures, 1 table
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- 2016
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105. Fragmenting networks by targeting collective influencers at a mesoscopic level
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Kobayashi, Teruyoshi and Masuda, Naoki
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Physics - Physics and Society ,Computer Science - Social and Information Networks - Abstract
A practical approach to protecting networks against epidemic processes such as spreading of infectious diseases, malware, and harmful viral information is to remove some influential nodes beforehand to fragment the network into small components. Because determining the optimal order to remove nodes is a computationally hard problem, various approximate algorithms have been proposed to efficiently fragment networks by sequential node removal. Morone and Makse proposed an algorithm employing the non-backtracking matrix of given networks, which outperforms various existing algorithms. In fact, many empirical networks have community structure, compromising the assumption of local tree-like structure on which the original algorithm is based. We develop an immunization algorithm by synergistically combining the Morone-Makse algorithm and coarse graining of the network in which we regard a community as a supernode. In this way, we aim to identify nodes that connect different communities at a reasonable computational cost. The proposed algorithm works more efficiently than the Morone-Makse and other algorithms on networks with community structure., Comment: 5 figures, 3 tables, and SI included
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- 2016
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106. Temporal interactions facilitate endemicity in the susceptible-infected-susceptible epidemic model
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Speidel, Leo, Klemm, Konstantin, Eguíluz, Víctor M., and Masuda, Naoki
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Physics - Physics and Society ,Condensed Matter - Disordered Systems and Neural Networks - Abstract
Data of physical contacts and face-to-face communications suggest temporally varying networks as the media on which infections take place among humans and animals. Epidemic processes on temporal networks are complicated by complexity of both network structure and temporal dimensions. Theoretical approaches are much needed for identifying key factors that affect dynamics of epidemics. In particular, what factors make some temporal networks stronger media of infection than other temporal networks is under debate. We develop a theory to understand the susceptible-infected-susceptible epidemic model on arbitrary temporal networks, where each contact is used for a finite duration. We show that temporality of networks lessens the epidemic threshold such that infections persist more easily in temporal networks than in their static counterparts. We further show that the Lie commutator bracket of the adjacency matrices at different times is a key determinant of the epidemic threshold in temporal networks. The effect of temporality on the epidemic threshold, which depends on a data set, is approximately predicted by the magnitude of a commutator norm., Comment: 8 figures, 1 table
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- 2016
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107. A computational biomarker of juvenile myoclonic epilepsy from resting-state MEG
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Lopes, Marinho A., Krzemiński, Dominik, Hamandi, Khalid, Singh, Krish D., Masuda, Naoki, Terry, John R., and Zhang, Jiaxiang
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- 2021
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108. A Gillespie algorithm for non-Markovian stochastic processes
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Masuda, Naoki and Rocha, Luis E. C.
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Physics - Physics and Society ,Physics - Data Analysis, Statistics and Probability - Abstract
The Gillespie algorithm provides statistically exact methods for simulating stochastic dynamics modelled as interacting sequences of discrete events including systems of biochemical reactions or earthquake occurrences, networks of queuing processes or spiking neurons, and epidemic and opinion formation processes on social networks. Empirically, the inter-event times of various phenomena obey long-tailed distributions. The Gillespie algorithm and its variants either assume Poisson processes (i.e., exponentially distributed inter-event times), use particular functions for time courses of the event rate, or work for non-Poissonian renewal processes, including the case of long-tailed distributions of inter-event times, but at a high computational cost. In the present study, we propose an innovative Gillespie algorithm for renewal processes on the basis of the Laplace transform. The algorithm makes use of the fact that a class of point processes is represented as a mixture of Poisson processes with different event rates. The method is applicable to multivariate renewal processes whose survival function of inter-event times is completely monotone. It is an exact algorithm and works faster than a recently proposed Gillespie algorithm for general renewal processes, which is exact only in the limit of infinitely many processes. We also propose a method to generate sequences of event times with a tunable amount of positive correlation between inter-event times. We demonstrate our algorithm with exact simulations of epidemic processes on networks, finding that a realistic amount of positive correlation in inter-event times only slightly affects the epidemic dynamics., Comment: 3 figures, 1 table
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- 2016
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109. Individual-based approach to epidemic processes on arbitrary dynamic contact networks
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Rocha, Luis E C and Masuda, Naoki
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Quantitative Biology - Populations and Evolution ,Physics - Data Analysis, Statistics and Probability ,Physics - Physics and Society - Abstract
The dynamics of contact networks and epidemics of infectious diseases often occur on comparable time scales. Ignoring one of these time scales may provide an incomplete understanding of the population dynamics of the infection process. We develop an individual-based approximation for the susceptible-infected-recovered epidemic model applicable to arbitrary dynamic networks. Our framework provides, at the individual-level, the probability flow over time associated with the infection dynamics. This computationally efficient framework discards the correlation between the states of different nodes, yet provides accurate results in approximating direct numerical simulations. It naturally captures the temporal heterogeneities and correlations of contact sequences, fundamental ingredients regulating the timing and size of an epidemic outbreak. Using real-life data, we show that the static network model overestimates the reproduction number but underestimates the infection potential of super-spreading individuals. The high accuracy of our approximation further allows us to detect the index individual of an epidemic outbreak.
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- 2015
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110. Accelerating coordination in temporal networks by engineering the link order
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Masuda, Naoki
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Physics - Physics and Society ,Computer Science - Social and Information Networks - Abstract
Social dynamics on a network may be accelerated or decelerated depending on which pairs of individuals in the network communicate early and which pairs do later. The order with which the links in a given network are sequentially used, which we call the link order, may be a strong determinant of dynamical behaviour on networks, potentially adding a new dimension to effects of temporal networks relative to static networks. Here we study the effect of the link order on linear coordination (i.e., synchronisation) dynamics. We show that the coordination speed considerably depends on specific orders of links. In addition, applying each single link for a long time to ensure strong pairwise coordination before moving to a next pair of individuals does not often enhance coordination of the entire network. We also implement a simple greedy algorithm to optimise the link order in favour of fast coordination., Comment: 5 figures
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- 2015
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111. Community detection in directed acyclic graphs
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Speidel, Leo, Takaguchi, Taro, and Masuda, Naoki
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Physics - Physics and Society ,Computer Science - Social and Information Networks - Abstract
Some temporal networks, most notably citation networks, are naturally represented as directed acyclic graphs (DAGs). To detect communities in DAGs, we propose a modularity for DAGs by defining an appropriate null model (i.e., randomized network) respecting the order of nodes. We implement a spectral method to approximately maximize the proposed modularity measure and test the method on citation networks and other DAGs. We find that the attained values of the modularity for DAGs are similar for partitions that we obtain by maximizing the proposed modularity (designed for DAGs), the modularity for undirected networks and that for general directed networks. In other words, if we neglect the order imposed on nodes (and the direction of links) in a given DAG and maximize the conventional modularity measure, the obtained partition is close to the optimal one in the sense of the modularity for DAGs., Comment: 2 figures, 7 tables
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- 2015
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112. Win-stay lose-shift strategy in formation changes in football
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Tamura, Kohei and Masuda, Naoki
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Physics - Physics and Society - Abstract
Managerial decision making is likely to be a dominant determinant of performance of teams in team sports. Here we use Japanese and German football data to investigate correlates between temporal patterns of formation changes across matches and match results. We found that individual teams and managers both showed win-stay lose-shift behavior, a type of reinforcement learning. In other words, they tended to stick to the current formation after a win and switch to a different formation after a loss. In addition, formation changes did not statistically improve the results of succeeding matches.The results indicate that a swift implementation of a new formation in the win-stay lose-shift manner may not be a successful managerial rule of thumb., Comment: 7 figures, 11 tables
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- 2015
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113. Disrupted brain connectivity in children treated with therapeutic hypothermia for neonatal encephalopathy
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Spencer, Arthur P.C., Brooks, Jonathan C.W., Masuda, Naoki, Byrne, Hollie, Lee-Kelland, Richard, Jary, Sally, Thoresen, Marianne, Tonks, James, Goodfellow, Marc, Cowan, Frances M., and Chakkarapani, Ela
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- 2021
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114. Motor function and white matter connectivity in children cooled for neonatal encephalopathy
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Spencer, Arthur P.C., Brooks, Jonathan C.W., Masuda, Naoki, Byrne, Hollie, Lee-Kelland, Richard, Jary, Sally, Thoresen, Marianne, Goodfellow, Marc, Cowan, Frances M., and Chakkarapani, Ela
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- 2021
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115. Minimum Contrast PCI
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Masuda, Naoki and Yoshimachi, Fuminobu, editor
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- 2020
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116. Online landmark replacement for out-of-sample dimensionality reduction methods.
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Thongprayoon, Chanon and Masuda, Naoki
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MULTIDIMENSIONAL scaling , *TIME-varying networks , *TIME series analysis , *DOMINATING set , *GEOMETRIC approach - Abstract
A strategy to assist visualization and analysis of large and complex datasets is dimensionality reduction, with which one maps each data point into a low-dimensional manifold. However, various dimensionality reduction techniques are computationally infeasible for large data. Out-of-sample techniques aim to resolve this difficulty; they only apply the dimensionality reduction technique on a small portion of data, referred to as landmarks, and determine the embedding coordinates of the other points using landmarks as references. Out-of-sample techniques have been applied to online settings, or when data arrive as time series. However, existing online out-of-sample techniques use either all the previous data points as landmarks or the fixed set of landmarks and therefore are potentially not good at capturing the geometry of the entire dataset when the time series is non-stationary. To address this problem, we propose an online landmark replacement algorithm for out-of-sample techniques using geometric graphs and the minimal dominating set on them. We mathematically analyse some properties of the proposed algorithm, particularly focusing on the case of landmark multi-dimensional scaling as the out-of-sample technique, and test its performance on synthetic and empirical time-series data. [ABSTRACT FROM AUTHOR]
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- 2024
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117. Associations of conservatism and jumping to conclusions biases with aberrant salience and default mode network
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Miyata, Jun, primary, Sasamoto, Akihiko, additional, Ezaki, Takahiro, additional, Isobe, Masanori, additional, Kochiyama, Takanori, additional, Masuda, Naoki, additional, Mori, Yasuo, additional, Sakai, Yuki, additional, Sawamoto, Nobukatsu, additional, Tei, Shisei, additional, Ubukata, Shiho, additional, Aso, Toshihiko, additional, Murai, Toshiya, additional, and Takahashi, Hidehiko, additional
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- 2024
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118. Opinion control in complex networks
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Masuda, Naoki
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Physics - Physics and Society ,Computer Science - Social and Information Networks - Abstract
In many instances of election, the electorate appears to be a composite of partisan and independent voters. Given that partisans are not likely to convert to a different party, a main goal for a party could be to mobilize independent voters toward the party with the help of strong leadership, mass media, partisans, and effects of peer-to-peer influence. Based on the exact solution of the classical voter model dynamics in the presence of perfectly partisan voters (i.e., zealots), we propose a computational method to maximize the share of the party in a social network of independent voters by pinning control strategy. The party, corresponding to the controller or zealots, optimizes the nodes to be controlled given the information about the connectivity of independent voters and the set of nodes that the opponent party controls. We show that controlling hubs is generally a good strategy, whereas the optimized strategy is even better. The superiority of the optimized strategy is particularly eminent when the independent voters are connected as directed rather than undirected networks., Comment: 7 figures, 1 table
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- 2014
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119. The basic reproduction number as a predictor for epidemic outbreaks in temporal networks
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Holme, Petter and Masuda, Naoki
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Quantitative Biology - Populations and Evolution ,Computer Science - Social and Information Networks ,Physics - Physics and Society - Abstract
The basic reproduction number R0 -- the number of individuals directly infected by an infectious person in an otherwise susceptible population -- is arguably the most widely used estimator of how severe an epidemic outbreak can be. This severity can be more directly measured as the fraction people infected once the outbreak is over, {\Omega}. In traditional mathematical epidemiology and common formulations of static network epidemiology, there is a deterministic relationship between R0 and {\Omega}. However, if one considers disease spreading on a temporal contact network -- where one knows when contacts happen, not only between whom -- then larger R0 does not necessarily imply larger {\Omega}. In this paper, we numerically investigate the relationship between R0 and {\Omega} for a set of empirical temporal networks of human contacts. Among 31 explanatory descriptors of temporal network structure, we identify those that make R0 an imperfect predictor of {\Omega}. We find that descriptors related to both temporal and topological aspects affect the relationship between R0 and {\Omega}, but in different ways.
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- 2014
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120. Steady state and mean recurrence time for random walks on stochastic temporal networks
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Speidel, Leo, Lambiotte, Renaud, Aihara, Kazuyuki, and Masuda, Naoki
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Physics - Physics and Society ,Condensed Matter - Disordered Systems and Neural Networks ,Computer Science - Social and Information Networks - Abstract
Random walks are basic diffusion processes on networks and have applications in, for example, searching, navigation, ranking, and community detection. Recent recognition of the importance of temporal aspects on networks spurred studies of random walks on temporal networks. Here we theoretically study two types of event-driven random walks on a stochastic temporal network model that produces arbitrary distributions of interevent-times. In the so-called active random walk, the interevent-time is reinitialized on all links upon each movement of the walker. In the so-called passive random walk, the interevent-time is only reinitialized on the link that has been used last time, and it is a type of correlated random walk. We find that the steady state is always the uniform density for the passive random walk. In contrast, for the active random walk, it increases or decreases with the node's degree depending on the distribution of interevent-times. The mean recurrence time of a node is inversely proportional to the degree for both active and passive random walks. Furthermore, the mean recurrence time does or does not depend on the distribution of interevent-times for the active and passive random walks, respectively., Comment: 5 figures
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- 2014
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121. Global network structure of dominance hierarchy of ant workers
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Shimoji, Hiroyuki, Abe, Masato S., Tsuji, Kazuki, and Masuda, Naoki
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Quantitative Biology - Populations and Evolution ,Computer Science - Social and Information Networks ,Physics - Physics and Society - Abstract
Dominance hierarchy among animals is widespread in various species and believed to serve to regulate resource allocation within an animal group. Unlike small groups, however, detection and quantification of linear hierarchy in large groups of animals are a difficult task. Here, we analyse aggression-based dominance hierarchies formed by worker ants in Diacamma sp. as large directed networks. We show that the observed dominance networks are perfect or approximate directed acyclic graphs, which are consistent with perfect linear hierarchy. The observed networks are also sparse and random but significantly different from networks generated through thinning of the perfect linear tournament (i.e., all individuals are linearly ranked and dominance relationship exists between every pair of individuals). These results pertain to global structure of the networks, which contrasts with the previous studies inspecting frequencies of different types of triads. In addition, the distribution of the out-degree (i.e., number of workers that the focal worker attacks), not in-degree (i.e., number of workers that attack the focal worker), of each observed network is right-skewed. Those having excessively large out-degrees are located near the top, but not the top, of the hierarchy. We also discuss evolutionary implications of the discovered properties of dominance networks., Comment: 5 figures, 2 tables, 4 supplementary figures, 2 supplementary tables
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- 2014
122. Networks maximizing the consensus time of voter models
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Iwamasa, Yuni and Masuda, Naoki
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Condensed Matter - Disordered Systems and Neural Networks ,Computer Science - Social and Information Networks ,Physics - Physics and Society - Abstract
We explore the networks that yield the largest mean consensus time of voter models under different update rules. By analytical and numerical means, we show that the so-called lollipop graph, barbell graph, and double star graph maximise the mean consensus time under the update rules called the link dynamics, voter model, and invasion process, respectively. For each update rule, the largest mean consensus time scales as O(N^3), where N is the number of nodes in the network., Comment: 9 figures, 2 tables
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- 2014
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123. Dynamics of social balance under temporal interaction
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Nishi, Ryosuke and Masuda, Naoki
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Computer Science - Social and Information Networks ,Physics - Physics and Society - Abstract
Real social contacts are often intermittent such that a link between a pair of nodes in a social network is only temporarily used. Effects of such temporal networks on social dynamics have been investigated for several phenomenological models such as epidemic spreading, linear diffusion processes, and nonlinear oscillations. Here, we numerically investigate nonlinear social balance dynamics in such a situation. Social balance is a classical psychological theory, which dictates that a triad is balanced if the three agents are mutual friends or if the two of them are the friends of each other and hostile to the other agent. We show that the social balance dynamics is slowed down on the temporal complete graph as compared to the corresponding static complete graph., Comment: 6 pages, 3 figures, 1 table
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- 2014
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124. Voter model on the two-clique graph
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Masuda, Naoki
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Physics - Physics and Society ,Condensed Matter - Disordered Systems and Neural Networks - Abstract
I examine the mean consensus time (i.e., exit time) of the voter model in the so-called two-clique graph. The two-clique graph is composed of two cliques interconnected by some links and considered as a toy model of networks with community structure or multilayer networks. I analytically show that, as the number of interclique links per node is varied, the mean consensus time experiences a crossover between a fast consensus regime [i.e., O(N)] and a slow consensus regime [i.e., O(N^2)], where N is the number of nodes. The fast regime is consistent with the result for homogeneous well-mixed graphs such as the complete graph. The slow regime appears only when the entire network has O(1) interclique links. The present results suggest that the effect of community structure on the consensus time of the voter model is fairly limited., Comment: 4 figures
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- 2014
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125. Introduction to the special issue “Economics and Complex Networks”
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Kobayashi, Teruyoshi and Masuda, Naoki
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- 2021
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126. Random walk centrality for temporal networks
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Rocha, Luis Enrique Correa and Masuda, Naoki
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Physics - Physics and Society ,Computer Science - Social and Information Networks - Abstract
Nodes can be ranked according to their relative importance within the network. Ranking algorithms based on random walks are particularly useful because they connect topological and diffusive properties of the network. Previous methods based on random walks, as for example the PageRank, have focused on static structures. However, several realistic networks are indeed dynamic, meaning that their structure changes in time. In this paper, we propose a centrality measure for temporal networks based on random walks which we call TempoRank. While in a static network, the stationary density of the random walk is proportional to the degree or the strength of a node, we find that in temporal networks, the stationary density is proportional to the in-strength of the so-called effective network. The stationary density also depends on the sojourn probability q which regulates the tendency of the walker to stay in the node. We apply our method to human interaction networks and show that although it is important for a node to be connected to another node with many random walkers at the right moment (one of the principles of the PageRank), this effect is negligible in practice when the time order of link activation is included., Comment: main text + supplementary material
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- 2014
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127. Iterated crowdsourcing dilemma game
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Oishi, Koji, Cebrian, Manuel, Abeliuk, Andres, and Masuda, Naoki
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Computer Science - Computer Science and Game Theory ,Physics - Physics and Society ,Quantitative Biology - Populations and Evolution - Abstract
The Internet has enabled the emergence of collective problem solving, also known as crowdsourcing, as a viable option for solving complex tasks. However, the openness of crowdsourcing presents a challenge because solutions obtained by it can be sabotaged, stolen, and manipulated at a low cost for the attacker. We extend a previously proposed crowdsourcing dilemma game to an iterated game to address this question. We enumerate pure evolutionarily stable strategies within the class of so-called reactive strategies, i.e., those depending on the last action of the opponent. Among the 4096 possible reactive strategies, we find 16 strategies each of which is stable in some parameter regions. Repeated encounters of the players can improve social welfare when the damage inflicted by an attack and the cost of attack are both small. Under the current framework, repeated interactions do not really ameliorate the crowdsourcing dilemma in a majority of the parameter space., Comment: 4 figures, 4 tables
- Published
- 2014
128. The Effect of Concurrency on Epidemic Threshold in Time-Varying Networks
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Onaga, Tomokatsu, Gleeson, James P., Masuda, Naoki, Bertino, Elisa, Series Editor, Cioffi-Revilla, Claudio, Series Editor, Foster, Jacob, Series Editor, Gilbert, Nigel, Series Editor, Golbeck, Jennifer, Series Editor, Gonçalves, Bruno, Series Editor, Kitts, James A., Series Editor, Liebovitch, Larry S., Series Editor, Matei, Sorin A., Series Editor, Nijholt, Anton, Series Editor, Nowak, Andrzej, Series Editor, Savit, Robert, Series Editor, Squazzoni, Flaminio, Series Editor, Vinciarelli, Alessandro, Series Editor, Holme, Petter, editor, and Saramäki, Jari, editor
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- 2019
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129. Observability transitions in correlated networks
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Hasegawa, Takehisa, Takaguchi, Taro, and Masuda, Naoki
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Physics - Physics and Society ,Condensed Matter - Statistical Mechanics ,Computer Science - Social and Information Networks - Abstract
Yang, Wang, and Motter [Phys. Rev. Lett. 109, 258701 (2012)] analyzed a model for network observability transitions in which a sensor placed on a node makes the node and the adjacent nodes observable. The size of the connected components comprising the observable nodes is a major concern of the model. We analyze this model in random heterogeneous networks with degree correlation. With numerical simulations and analytical arguments based on generating functions, we find that negative degree correlation makes networks more observable. This result holds true both when the sensors are placed on nodes one by one in a random order and when hubs preferentially receive the sensors. Finally, we numerically optimize networks with a fixed degree sequence with respect to the size of the largest observable component. Optimized networks have negative degree correlation induced by the resulting hub-repulsive structure; the largest hubs are rarely connected to each other, in contrast to the rich-club phenomenon of networks., Comment: 14 pages, 5 figures
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- 2013
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130. Random Walks on Directed Networks: Inference and Respondent-driven Sampling
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Malmros, Jens, Masuda, Naoki, and Britton, Tom
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Statistics - Methodology ,Computer Science - Social and Information Networks ,Physics - Physics and Society - Abstract
Respondent driven sampling (RDS) is a method often used to estimate population properties (e.g. sexual risk behavior) in hard-to-reach populations. It combines an effective modified snowball sampling methodology with an estimation procedure that yields unbiased population estimates under the assumption that the sampling process behaves like a random walk on the social network of the population. Current RDS estimation methodology assumes that the social network is undirected, i.e. that all edges are reciprocal. However, empirical social networks in general also have non-reciprocated edges. To account for this fact, we develop a new estimation method for RDS in the presence of directed edges on the basis of random walks on directed networks. We distinguish directed and undirected edges and consider the possibility that the random walk returns to its current position in two steps through an undirected edge. We derive estimators of the selection probabilities of individuals as a function of the number of outgoing edges of sampled individuals. We evaluate the performance of the proposed estimators on artificial and empirical networks to show that they generally perform better than existing methods. This is in particular the case when the fraction of directed edges in the network is large., Comment: 31 pages, 5 figures, 4 tables
- Published
- 2013
131. Complex dynamics of a nonlinear voter model with contrarian agents
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Tanabe, Shoma and Masuda, Naoki
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Physics - Physics and Society ,Nonlinear Sciences - Adaptation and Self-Organizing Systems - Abstract
We investigate mean-field dynamics of a nonlinear opinion formation model with congregator and contrarian agents. Each agent assumes one of the two possible states. Congregators imitate the state of other agents with a rate that increases with the number of other agents in the opposite state, as in the linear voter model and nonlinear majority voting models. Contrarians flip the state with a rate that increases with the number of other agents in the same state. The nonlinearity controls the strength of the majority voting and is used as a main bifurcation parameter. We show that the model undergoes a rich bifurcation scenario comprising the egalitarian equilibrium, two symmetric lopsided equilibria, limit cycle, and coexistence of different types of stable equilibria with intertwining attrative basins., Comment: 15 pages, 4 figures
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- 2013
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132. Evolutionary dynamics in finite populations with zealots
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Nakajima, Yohei and Masuda, Naoki
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Quantitative Biology - Populations and Evolution - Abstract
We investigate evolutionary dynamics of two-strategy matrix games with zealots in finite populations. Zealots are assumed to take either strategy regardless of the fitness. When the strategy selected by the zealots is the same, the fixation of the strategy selected by the zealots is a trivial outcome. We study fixation time in this scenario. We show that the fixation time is divided into three main regimes, in one of which the fixation time is short, and in the other two the fixation time is exponentially long in terms of the population size. Different from the case without zealots, there is a threshold selection intensity below which the fixation is fast for an arbitrary payoff matrix. We illustrate our results with examples of various social dilemma games., Comment: 1 table, 4 figures
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- 2013
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133. Evolution via imitation among like-minded individuals
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Masuda, Naoki
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Quantitative Biology - Populations and Evolution - Abstract
In social situations with which evolutionary game is concerned, individuals are considered to be heterogeneous in various aspects. In particular, they may differently perceive the same outcome of the game owing to heterogeneity in idiosyncratic preferences, fighting abilities, and positions in a social network. In such a population, an individual may imitate successful and similar others, where similarity refers to that in the idiosyncratic fitness function. I propose an evolutionary game model with two subpopulations on the basis of multipopulation replicator dynamics to describe such a situation. In the proposed model, pairs of players are involved in a two-person game as a well-mixed population, and imitation occurs within subpopulations in each of which players have the same payoff matrix. It is shown that the model does not allow any internal equilibrium such that the dynamics differs from that of other related models such as the bimatrix game. In particular, even a slight difference in the payoff matrix in the two subpopulations can make the opposite strategies to be stably selected in the two subpopulations in the snowdrift and coordination games., Comment: 3 figures
- Published
- 2013
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134. Voter models with contrarian agents
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Masuda, Naoki
- Subjects
Physics - Physics and Society ,Computer Science - Social and Information Networks - Abstract
In the voter and many other opinion formation models, agents are assumed to behave as congregators (also called the conformists); they are attracted to the opinions of others. In this study, I investigate linear extensions of the voter model with contrarian agents. An agent is either congregator or contrarian and assumes a binary opinion. I investigate three models that differ in the behavior of the contrarian toward other agents. In model 1, contrarians mimic the opinions of other contrarians and oppose (i.e., try to select the opinion opposite to) those of congregators. In model 2, contrarians mimic the opinions of congregators and oppose those of other contrarians. In model 3, contrarians oppose anybody. In all models, congregators are assumed to like anybody. I show that even a small number of contrarians prohibits the consensus in the entire population to be reached in all three models. I also obtain the equilibrium distributions using the van Kampen small-fluctuation approximation and the Fokker-Planck equation for the case of many contrarians and a single contrarian, respectively. I show that the fluctuation around the symmetric coexistence equilibrium is much larger in model 2 than in models 1 and 3 when contrarians are rare., Comment: 3 figures, 1 table
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- 2013
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135. Temporal networks: slowing down diffusion by long lasting interactions
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Masuda, Naoki, Klemm, Konstantin, and Eguíluz, Víctor M.
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Physics - Physics and Society ,Computer Science - Social and Information Networks - Abstract
Interactions among units in complex systems occur in a specific sequential order thus affecting the flow of information, the propagation of diseases, and general dynamical processes. We investigate the Laplacian spectrum of temporal networks and compare it with that of the corresponding aggregate network. First, we show that the spectrum of the ensemble average of a temporal network has identical eigenmodes but smaller eigenvalues than the aggregate networks. In large networks without edge condensation, the expected temporal dynamics is a time-rescaled version of the aggregate dynamics. Even for single sequential realizations, diffusive dynamics is slower in temporal networks. These discrepancies are due to the noncommutability of interactions. We illustrate our analytical findings using a simple temporal motif, larger network models and real temporal networks., Comment: 5 pages, 2 figures, v2: minor revision + supplemental material
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- 2013
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136. A collective opinion formation model under Bayesian updating and confirmation bias
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Nishi, Ryosuke and Masuda, Naoki
- Subjects
Physics - Physics and Society ,Computer Science - Social and Information Networks - Abstract
We propose a collective opinion formation model with a so-called confirmation bias. The confirmation bias is a psychological effect with which, in the context of opinion formation, an individual in favor of an opinion is prone to misperceive new incoming information as supporting the current belief of the individual. Our model modifies a Bayesian decision-making model for single individuals [M. Rabin and J. L. Schrag, Q. J. Econ. 114, 37 (1999)] for the case of a well-mixed population of interacting individuals in the absence of the external input. We numerically simulate the model to show that all the agents eventually agree on one of the two opinions only when the confirmation bias is weak. Otherwise, the stochastic population dynamics ends up creating a disagreement configuration (also called polarization), particularly for large system sizes. A strong confirmation bias allows various final disagreement configurations with different fractions of the individuals in favor of the opposite opinions., Comment: 23 pages, 7 figures
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- 2013
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137. Two types of well followed users in the followership networks of Twitter
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Saito, Kodai and Masuda, Naoki
- Subjects
Computer Science - Social and Information Networks ,Physics - Physics and Society - Abstract
In the Twitter blogosphere, the number of followers is probably the most basic and succinct quantity for measuring popularity of users. However, the number of followers can be manipulated in various ways; we can even buy follows. Therefore, alternative popularity measures for Twitter users on the basis of, for example, users' tweets and retweets, have been developed. In the present work, we take a purely network approach to this fundamental question. First, we find that two relatively distinct types of users possessing a large number of followers exist, in particular for Japanese, Russian, and Korean users among the seven language groups that we examined. A first type of user follows a small number of other users. A second type of user follows approximately the same number of other users as the number of follows that the user receives. Then, we compare local (i.e., egocentric) followership networks around the two types of users with many followers. We show that the second type, which is presumably uninfluential users despite its large number of followers, is characterized by high link reciprocity, a large number of friends (i.e., those whom a user follows) for the followers, followers' high link reciprocity, large clustering coefficient, large fraction of the second type of users among the followers, and a small PageRank. Our network-based results support that the number of followers used alone is a misleading measure of user's popularity. We propose that the number of friends, which is simple to measure, also helps us to assess the popularity of Twitter users., Comment: 4 Figures and 8 Tables
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- 2013
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138. Correction to: Mitigation strategies against cascading failures within a project activity network
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Ellinas, Christos, Nicolaides, Christos, and Masuda, Naoki
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- 2022
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139. Network analysis of the immune state of mice
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Fonseca dos Reis, Elohim, Viney, Mark, and Masuda, Naoki
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- 2021
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140. Recurrence in the evolution of air transport networks
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Sugishita, Kashin and Masuda, Naoki
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- 2021
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141. Detecting anomalous citation groups in journal networks
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Kojaku, Sadamori, Livan, Giacomo, and Masuda, Naoki
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- 2021
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142. Application of semidefinite programming to maximize the spectral gap produced by node removal
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Masuda, Naoki, Fujie, Tetsuya, and Murota, Kazuo
- Subjects
Condensed Matter - Disordered Systems and Neural Networks ,Mathematics - Optimization and Control - Abstract
The smallest positive eigenvalue of the Laplacian of a network is called the spectral gap and characterizes various dynamics on networks. We propose mathematical programming methods to maximize the spectral gap of a given network by removing a fixed number of nodes. We formulate relaxed versions of the original problem using semidefinite programming and apply them to example networks., Comment: 1 figure. Short paper presented in CompleNet, Berlin, March 13-15 (2013)
- Published
- 2013
143. Groupwise information sharing promotes ingroup favoritism in indirect reciprocity
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Nakamura, Mitsuhiro and Masuda, Naoki
- Subjects
Physics - Physics and Society ,Computer Science - Social and Information Networks ,Quantitative Biology - Populations and Evolution - Abstract
Indirect reciprocity is a mechanism for cooperation in social dilemma situations, in which an individual is motivated to help another to acquire a good reputation and receive help from others afterwards. Ingroup favoritism is another aspect of human cooperation, whereby individuals help members in their own group more often than those in other groups. Ingroup favoritism is a puzzle for the theory of cooperation because it is not easily evolutionarily stable. In the context of indirect reciprocity, ingroup favoritism has been shown to be a consequence of employing a double standard when assigning reputations to ingroup and outgroup members; e.g., helping an ingroup member is regarded as good, whereas the same action toward an outgroup member is regarded as bad. We analyze a model of indirect reciprocity in which information sharing is conducted groupwise. In our model, individuals play social dilemma games within and across groups, and the information about their reputations is shared within each group. We show that evolutionarily stable ingroup favoritism emerges even if all the players use the same reputation assignment rule regardless of group (i.e., a single standard). Two reputation assignment rules called simple standing and stern judging yield ingroup favoritism. Stern judging induces much stronger ingroup favoritism than does simple standing. Simple standing and stern judging are evolutionarily stable against each other when groups employing different assignment rules compete and the number of groups is sufficiently large. In addition, we analytically show as a limiting case that homogeneous populations of reciprocators that use reputations are unstable when individuals independently infer reputations of individuals, which is consistent with previously reported numerical results., Comment: 25 pages, 7 figures. The Abstract is shortened to fill in arXiv's abstract form
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- 2012
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144. Formation of feedforward networks and frequency synchrony by spike-timing-dependent plasticity
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Masuda, Naoki and Kori, Hiroshi
- Subjects
Quantitative Biology - Neurons and Cognition ,Condensed Matter - Disordered Systems and Neural Networks - Abstract
Spike-timing-dependent plasticity (STDP) with asymmetric learning windows is commonly found in the brain and useful for a variety of spike-based computations such as input filtering and associative memory. A natural consequence of STDP is establishment of causality in the sense that a neuron learns to fire with a lag after specific presynaptic neurons have fired. The effect of STDP on synchrony is elusive because spike synchrony implies unitary spike events of different neurons rather than a causal delayed relationship between neurons. We explore how synchrony can be facilitated by STDP in oscillator networks with a pacemaker. We show that STDP with asymmetric learning windows leads to self-organization of feedforward networks starting from the pacemaker. As a result, STDP drastically facilitates frequency synchrony. Even though differences in spike times are lessened as a result of synaptic plasticity, the finite time lag remains so that perfect spike synchrony is not realized. In contrast to traditional mechanisms of large-scale synchrony based on mutual interaction of coupled neurons, the route to synchrony discovered here is enslavement of downstream neurons by upstream ones. Facilitation of such feedforward synchrony does not occur for STDP with symmetric learning windows., Comment: 9 figures
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- 2012
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145. Evolution of cooperation driven by zealots
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Masuda, Naoki
- Subjects
Physics - Physics and Society ,Computer Science - Social and Information Networks ,Quantitative Biology - Populations and Evolution - Abstract
Recent experimental results with humans involved in social dilemma games suggest that cooperation may be a contagious phenomenon and that the selection pressure operating on evolutionary dynamics (i.e., mimicry) is relatively weak. I propose an evolutionary dynamics model that links these experimental findings and evolution of cooperation. By assuming a small fraction of (imperfect) zealous cooperators, I show that a large fraction of cooperation emerges in evolutionary dynamics of social dilemma games. Even if defection is more lucrative than cooperation for most individuals, they often mimic cooperation of fellows unless the selection pressure is very strong. Then, zealous cooperators can transform the population to be even fully cooperative under standard evolutionary dynamics., Comment: 5 figures
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- 2012
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146. Suicide ideation of individuals in online social networks
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Masuda, Naoki, Kurahashi, Issei, and Onari, Hiroko
- Subjects
Computer Science - Social and Information Networks ,Physics - Physics and Society - Abstract
Suicide explains the largest number of death tolls among Japanese adolescents in their twenties and thirties. Suicide is also a major cause of death for adolescents in many other countries. Although social isolation has been implicated to influence the tendency to suicidal behavior, the impact of social isolation on suicide in the context of explicit social networks of individuals is scarcely explored. To address this question, we examined a large data set obtained from a social networking service dominant in Japan. The social network is composed of a set of friendship ties between pairs of users created by mutual endorsement. We carried out the logistic regression to identify users' characteristics, both related and unrelated to social networks, which contribute to suicide ideation. We defined suicide ideation of a user as the membership to at least one active user-defined community related to suicide. We found that the number of communities to which a user belongs to, the intransitivity (i.e., paucity of triangles including the user), and the fraction of suicidal neighbors in the social network, contributed the most to suicide ideation in this order. Other characteristics including the age and gender contributed little to suicide ideation. We also found qualitatively the same results for depressive symptoms., Comment: 4 figures, 9 tables
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- 2012
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147. A model of competition among more than two languages
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Fujie, Ryo, Aihara, Kazuyuki, and Masuda, Naoki
- Subjects
Physics - Physics and Society ,Condensed Matter - Statistical Mechanics ,Computer Science - Social and Information Networks - Abstract
We extend the Abrams-Strogatz model for competition between two languages [Nature 424, 900 (2003)] to the case of n(>=2) competing states (i.e., languages). Although the Abrams-Strogatz model for n=2 can be interpreted as modeling either majority preference or minority aversion, the two mechanisms are distinct when n>=3. We find that the condition for the coexistence of different states is independent of n under the pure majority preference, whereas it depends on n under the pure minority aversion. We also show that the stable coexistence equilibrium and stable monopoly equilibria can be multistable under the minority aversion and not under the majority preference. Furthermore, we obtain the phase diagram of the model when the effects of the majority preference and minority aversion are mixed, under the condition that different states have the same attractiveness. We show that the multistability is a generic property of the model facilitated by large n., Comment: 28 pages, 7 figures
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- 2012
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148. Bursty communication patterns facilitate spreading in a threshold-based epidemic dynamics
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Takaguchi, Taro, Masuda, Naoki, and Holme, Petter
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Physics - Physics and Society ,Condensed Matter - Statistical Mechanics ,Computer Science - Social and Information Networks - Abstract
Records of social interactions provide us with new sources of data for understanding how interaction patterns affect collective dynamics. Such human activity patterns are often bursty, i.e., they consist of short periods of intense activity followed by long periods of silence. This burstiness has been shown to affect spreading phenomena; it accelerates epidemic spreading in some cases and slows it down in other cases. We investigate a model of history-dependent contagion. In our model, repeated interactions between susceptible and infected individuals in a short period of time is needed for a susceptible individual to contract infection. We carry out numerical simulations on real temporal network data to find that bursty activity patterns facilitate epidemic spreading in our model., Comment: 15 pages, 4 figures, 1 table
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- 2012
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149. Self-exciting point process modeling of conversation event sequences
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Masuda, Naoki, Takaguchi, Taro, Sato, Nobuo, and Yano, Kazuo
- Subjects
Physics - Physics and Society ,Computer Science - Social and Information Networks - Abstract
Self-exciting processes of Hawkes type have been used to model various phenomena including earthquakes, neural activities, and views of online videos. Studies of temporal networks have revealed that sequences of social interevent times for individuals are highly bursty. We examine some basic properties of event sequences generated by the Hawkes self-exciting process to show that it generates bursty interevent times for a wide parameter range. Then, we fit the model to the data of conversation sequences recorded in company offices in Japan. In this way, we can estimate relative magnitudes of the self excitement, its temporal decay, and the base event rate independent of the self excitation. These variables highly depend on individuals. We also point out that the Hawkes model has an important limitation that the correlation in the interevent times and the burstiness cannot be independently modulated., Comment: 8 figures
- Published
- 2012
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150. Importance of individual events in temporal networks
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Takaguchi, Taro, Sato, Nobuo, Yano, Kazuo, and Masuda, Naoki
- Subjects
Physics - Physics and Society ,Condensed Matter - Statistical Mechanics ,Computer Science - Social and Information Networks - Abstract
Records of time-stamped social interactions between pairs of individuals (e.g., face-to-face conversations, e-mail exchanges, and phone calls) constitute a so-called temporal network. A remarkable difference between temporal networks and conventional static networks is that time-stamped events rather than links are the unit elements generating the collective behavior of nodes. We propose an importance measure for single interaction events. By generalizing the concept of the advance of event proposed by [Kossinets G, Kleinberg J, and Watts D J (2008) Proceeding of the 14th ACM SIGKDD International conference on knowledge discovery and data mining, p 435], we propose that an event is central when it carries new information about others to the two nodes involved in the event. We find that the proposed measure properly quantifies the importance of events in connecting nodes along time-ordered paths. Because of strong heterogeneity in the importance of events present in real data, a small fraction of highly important events is necessary and sufficient to sustain the connectivity of temporal networks. Nevertheless, in contrast to the behavior of scale-free networks against link removal, this property mainly results from bursty activity patterns and not heterogeneous degree distributions., Comment: 36 pages, 13 figures, 2 tables
- Published
- 2012
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