101. Additional file 1 of A cancer stem cell-like phenotype is associated with miR-10b expression in aggressive squamous cell carcinomas
- Author
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Wimmer, Monika, Zauner, Roland, Ablinger, Michael, Piñón-Hofbauer, Josefina, Guttmann-Gruber, Christina, Reisenberger, Manuela, Lettner, Thomas, Niklas, Norbert, Proell, Johannes, Sajinovic, Mila, Souza, Paul De, Hainzl, Stefan, Kocher, Thomas, Murauer, Eva M., Bauer, Johann W., Strunk, Dirk, Reichelt, Julia, Mellick, Albert Sleiman, and Wally, Verena
- Abstract
Additional file 1. Supplementary information and data: Additional information on cell lines, bioinformatic data processing, CRISPR/Cas9-mediated knock-out of DIAPH2, flow cytometry for CD44 and CD24 expression, miRNA library preparation and next generation sequencing, Luciferase-reporter assay. Supplementary data summarized in tables: cell lines, antibodies, primers sequences, top up- and down-regulated miRNAs in microarray analysis: RDEB-cSCC versus RDEB-KCs, and HC-cSCC versus HC-KC, miR-10b target selection and validation. Supplementary experimental data in figures: miR-10b target selection and validation; controls for miRNA probe specificity in in situ hybridization on FFPE tissue sections; miRNA probe specificity for in situ hybridization on cultured cells and single cell resolution image-based data analysis workflow; miRNA probe specificity for in situ hybridization on cultured cells; generation of experimental cell lines; characterization of experimental cell lines; validation of miR-10b targets HOXD10 and DIAPH2; survival analysis and target evaluation.
- Published
- 2020
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