1,370 results on '"P. McCourt"'
Search Results
102. Renalase and its receptor, PMCA4b, are expressed in the placenta throughout the human gestation
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Melinda Wang, Tatiana Silva, Jessica M. Toothaker, Blake T. McCourt, Christine Shugrue, Gary Desir, Fred Gorelick, and Liza Konnikova
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Medicine ,Science - Abstract
Abstract Placental function requires organized growth, transmission of nutrients, and an anti-inflammatory milieu between the maternal and fetal interface, but placental factors important for its function remain unclear. Renalase is a pro-survival, anti-inflammatory flavoprotein found to be critical in other tissues. We examined the potential role of renalase in placental development. PCR, bulk RNA sequencing, immunohistochemistry, and immunofluorescence for renalase and its binding partners, PMCA4b and PZP, were performed on human placental tissue from second-trimester and full-term placentas separated into decidua, placental villi and chorionic plates. Quantification of immunohistochemistry was used to localize renalase across time course from 17 weeks to term. Endogenous production of renalase was examined in placental tissue and organoids. Renalase and its receptor PMCA4b transcripts and proteins were present in all layers of the placenta. Estimated RNLS protein levels did not change with gestation in the decidual samples. However, placental villi contained more renalase immunoreactive cells in fetal than full-term placental samples. RNLS co-labeled with markers for Hofbauer cells and trophoblasts within the placental villi. Endogenous production of RNLS, PMCA4b, and PZP by trophoblasts was validated in placental organoids. Renalase is endogenously expressed throughout placental tissue and specifically within Hofbauer cells and trophoblasts, suggesting a potential role for renalase in placental development and function. Future studies should assess renalase’s role in normal and diseased human placenta.
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- 2022
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103. The impact of magnetic fields on thermal instability
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Ji, Suoqing, Oh, S. Peng, and McCourt, Michael
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Astrophysics - Astrophysics of Galaxies ,Astrophysics - Cosmology and Nongalactic Astrophysics - Abstract
Cold ($T\sim 10^{4} \ \mathrm{K}$) gas is very commonly found in both galactic and cluster halos. There is no clear consensus on its origin. Such gas could be uplifted from the central galaxy by galactic or AGN winds. Alternatively, it could form in situ by thermal instability. Fragmentation into a multi-phase medium has previously been shown in hydrodynamic simulations to take place once $t_\mathrm{cool}/t_\mathrm{ff}$, the ratio of the cooling time to the free-fall time, falls below a threshold value. Here, we use 3D plane-parallel MHD simulations to investigate the influence of magnetic fields. We find that because magnetic tension suppresses buoyant oscillations of condensing gas, it destabilizes all scales below $l_\mathrm{A}^\mathrm{cool} \sim v_\mathrm{A} t_\mathrm{cool}$, enhancing thermal instability. This effect is surprisingly independent of magnetic field orientation or cooling curve shape, and sets in even at very low magnetic field strengths. Magnetic fields critically modify both the amplitude and morphology of thermal instability, with $\delta \rho/\rho \propto \beta^{-1/2}$, where $\beta$ is the ratio of thermal to magnetic pressure. In galactic halos, magnetic fields can render gas throughout the entire halo thermally unstable, and may be an attractive explanation for the ubiquity of cold gas, even in the halos of passive, quenched galaxies., Comment: 16 pages, 12 figures, published version on MNRAS
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- 2017
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104. Active Preference Learning for Personalized Portfolio Construction
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Tee, Kevin, McCourt, Michael, Martinez-Cantin, Ruben, Dewancker, Ian, and Liu, Frank
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Computer Science - Computational Engineering, Finance, and Science ,Quantitative Finance - Portfolio Management - Abstract
In financial asset management, choosing a portfolio requires balancing returns, risk, exposure, liquidity, volatility and other factors. These concerns are difficult to compare explicitly, with many asset managers using an intuitive or implicit sense of their interaction. We propose a mechanism for learning someone's sense of distinctness between portfolios with the goal of being able to identify portfolios which are predicted to perform well but are distinct from the perspective of the user. This identification occurs, e.g., in the context of Bayesian optimization of a backtested performance metric. Numerical experiments are presented which show the impact of personal beliefs in informing the development of a diverse and high-performing portfolio., Comment: 4 pages, 2 figures, 1 algorithm, ICML Human in the Loop workshop
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- 2017
105. Robust Bayesian Optimization with Student-t Likelihood
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Martinez-Cantin, Ruben, McCourt, Michael, and Tee, Kevin
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Computer Science - Learning ,Computer Science - Artificial Intelligence ,Statistics - Machine Learning - Abstract
Bayesian optimization has recently attracted the attention of the automatic machine learning community for its excellent results in hyperparameter tuning. BO is characterized by the sample efficiency with which it can optimize expensive black-box functions. The efficiency is achieved in a similar fashion to the learning to learn methods: surrogate models (typically in the form of Gaussian processes) learn the target function and perform intelligent sampling. This surrogate model can be applied even in the presence of noise; however, as with most regression methods, it is very sensitive to outlier data. This can result in erroneous predictions and, in the case of BO, biased and inefficient exploration. In this work, we present a GP model that is robust to outliers which uses a Student-t likelihood to segregate outliers and robustly conduct Bayesian optimization. We present numerical results evaluating the proposed method in both artificial functions and real problems.
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- 2017
106. Dynamical Properties of Eccentric Nuclear Disks: Stability, Longevity, and Implications for Tidal Disruption Rates in Post-Merger Galaxies
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Madigan, Ann-Marie, Halle, Andrew, Moody, Mackenzie, McCourt, Mike, Nixon, Chris, and Werkne, Heather
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Astrophysics - Astrophysics of Galaxies - Abstract
In some galaxies, the stars orbiting the supermassive black hole take the form of an eccentric nuclear disk, in which every star is on a coherent, apsidally-aligned orbit. The most famous example of an eccentric nuclear disk is the double nucleus of Andromeda, and there is strong evidence for many more in the local universe. Despite their apparent ubiquity however, a dynamical explanation for their longevity has remained a mystery: differential precession should wipe out large-scale apsidal-alignment on a short timescale. Here we identify a new dynamical mechanism which stabilizes eccentric nuclear disks, and explain for first time the negative eccentricity gradient seen in the Andromeda nucleus. The stabilizing mechanism drives oscillations of the eccentricity vectors of individual orbits, both in direction (about the mean body of the disk) and in magnitude. Combined with the negative eccentricity gradient, the eccentricity oscillations push some stars near the inner edge of the disk extremely close to the black hole, potentially leading to tidal disruption events. Order of magnitude calculations predict extremely high rates in recently-formed eccentric nuclear disks ($\sim0.1 - 1$ ${\rm yr}^{-1} {\rm gal}^{-1}$). Unless the stellar disks are replenished, these rates should decrease with time as the disk depletes in mass. If eccentric nuclear disks form during gas-rich major mergers, this may explain the preferential occurrence of tidal disruption events in recently-merged and post-merger (E+A/K+A) galaxies., Comment: Accepted to ApJ
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- 2017
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107. Resonant line transfer in a fog: Using Lyman-alpha to probe tiny structures in atomic gas
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Gronke, Max, Dijkstra, Mark, McCourt, Michael, and Oh, S. Peng
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Astrophysics - Astrophysics of Galaxies - Abstract
Motivated by observational and theoretical work which both suggest very small scale ($\lesssim 1\,$pc) structure in the circum-galactic medium of galaxies and in other environments, we study Lyman-$\alpha$ (Ly$\alpha$) radiative transfer in an extremely clumpy medium with many "clouds" of neutral gas along the line of sight. While previous studies have typically considered radiative transfer through sightlines intercepting $\lesssim 10$ clumps, we explore the limit of a very large number of clumps per sightline (up to $f_{\mathrm{c}} \sim 1000$). Our main finding is that, for covering factors greater than some critical threshold, a multiphase medium behaves similar to a homogeneous medium in terms of the emergent Ly$\alpha$ spectrum. The value of this threshold depends on both the clump column density and on the movement of the clumps. We estimate this threshold analytically and compare our findings to radiative transfer simulations with a range of covering factors, clump column densities, radii, and motions. Our results suggest that (i) the success in fitting observed Ly$\alpha$ spectra using homogeneous "shell models" (and the corresponding failure of multiphase models) hints towards the presence of very small-scale structure in neutral gas, in agreement within a number of other observations; and (ii) the recurrent problems of reproducing realistic line profiles from hydrodynamical simulations may be due to their inability to resolve small-scale structure, which causes simulations to underestimate the effective covering factor of neutral gas clouds., Comment: 18 pages, 21 figures; submitted to A&A; animations available at http://bit.ly/a-in-a-fog
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- 2017
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108. Uncertainty quantification of coal seam gas production prediction using Polynomial Chaos
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McCourt, Thomas A., Lawson, Brodie, Zhou, Fengde, Thompson, Bevan, Tyson, Stephen, and Donovan, Diane
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Mathematics - Numerical Analysis - Abstract
A surrogate model approximates a computationally expensive solver. Polynomial Chaos is a method to construct surrogate models by summing combinations of carefully chosen polynomials. The polynomials are chosen to respect the probability distributions of the uncertain input variables (parameters); this allows for both uncertainty quantification and global sensitivity analysis. In this paper we apply these techniques to a commercial solver for the estimation of peak gas rate and cumulative gas extraction from a coal seam gas well. The polynomial expansion is shown to honour the underlying geophysics with low error when compared to a much more complex and computationally slower commercial solver. We make use of advanced numerical integration techniques to achieve this accuracy using relatively small amounts of training data.
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- 2017
109. Bayesian Optimization for Machine Learning : A Practical Guidebook
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Dewancker, Ian, McCourt, Michael, and Clark, Scott
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Computer Science - Learning - Abstract
The engineering of machine learning systems is still a nascent field; relying on a seemingly daunting collection of quickly evolving tools and best practices. It is our hope that this guidebook will serve as a useful resource for machine learning practitioners looking to take advantage of Bayesian optimization techniques. We outline four example machine learning problems that can be solved using open source machine learning libraries, and highlight the benefits of using Bayesian optimization in the context of these common machine learning applications.
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- 2016
110. Interactive Preference Learning of Utility Functions for Multi-Objective Optimization
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Dewancker, Ian, McCourt, Michael, and Ainsworth, Samuel
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Mathematics - Optimization and Control ,90C29, 90B50 - Abstract
Real-world engineering systems are typically compared and contrasted using multiple metrics. For practical machine learning systems, performance tuning is often more nuanced than minimizing a single expected loss objective, and it may be more realistically discussed as a multi-objective optimization problem. We propose a novel generative model for scalar-valued utility functions to capture human preferences in a multi-objective optimization setting. We also outline an interactive active learning system that sequentially refines the understanding of stakeholders ideal utility functions using binary preference queries., Comment: 7 pages of text, 1 page of references, 3 figures, 1 algorithm, 1 table
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- 2016
111. Preemptive Termination of Suggestions during Sequential Kriging Optimization of a Brain Activity Reconstruction Simulation
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McCourt, Michael, Dewancker, Ian, and Ganci, Salvatore
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Computer Science - Computational Engineering, Finance, and Science ,Mathematics - Optimization and Control ,65N80, 90C26 - Abstract
Reconstructing brain activity through electroencephalography requires a boundary value problem (BVP) solver to take a proposed distribution of current dipoles within the brain and compute the resulting electrostatic potential on the scalp. This article proposes the use of sequential kriging optimization to identify different optimal BVP solver parameters for dipoles located in isolated sections of the brain by considering the cumulative impact of randomly oriented dipoles within a chosen isolated section. We attempt preemptive termination of parametrizations suggested during the sequential kriging optimization which, given the results to that point, seem unlikely to produce high quality solutions. Numerical experiments on a simplification of the full geometry for which an approximate solution is available show a benefit from this preemptive termination., Comment: 4 pages of text, 2 pages of citations, 1 figure, 1 algorithm, 1 table
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- 2016
112. Strategic Framing, Partisanship, and Philanthropy: The Story of the Charter School Movement
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Elizabeth McCourt Noonan
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This dissertation systematically explores the origins and evolution of the charter school movement in the United States from 1985 to 2015. I begin by analyzing the role of governors in K-12 education policymaking and find that while governors have generally placed greater emphasis on K-12 education policy over time, Republican governors have demonstrated significantly more engagement on education issues than their Democratic counterparts. This is puzzling given that the K-12 education policy arena has traditionally been dominated by the Democratic Party. I also trace the relative emphasis that governors have placed on the three competing goals of American public education: social efficiency, social mobility, and democratic equality. I demonstrate that Republican governors were more likely than Democrats to use all three frames in discussing their education priorities. I then argue that the rise of the colorblind social order in the 1980s ushered in a period of Republican leadership in education. This leadership initiated the outcome-based education reform movement, which has pushed for both standards and accountability reforms and school choice reforms. Republicans gained a leadership advantage in the K-12 education arena by developing an abstract racial equality frame and linking it with the social efficiency and social mobility frames of the standards and choice movements. The abstract racial equality frame emphasizes closing the racial achievement gap, providing equal educational opportunity for all, and promoting school choice as a civil right symbolically rather than substantively. Next, I explore the institutional, partisan, and contextual determinants of charter school authorization and implementation. I find that Republican governors are effective policy entrepreneurs in the charter school authorization phase and that Republican state legislators serve as important policy venues in the charter school implementation phase. I also demonstrate that the urban composition of states positively impacts charter school authorization and growth. However, the racial and ethnic composition of states has no effect on charter school adoption and mixed effects on charter school implementation. This finding partially supports my theory that the symbolic nature of abstract racial equality framing has failed to produce broad, multiethnic support for charter schools. The final section focuses on the education philanthropists and charter school advocacy organizations driving charter school growth. I find that philanthropists are both more likely to invest in right-to-work states as well as states with higher rates of union membership indicating that foundations balance strategic considerations and policy objectives. Additionally, while the size of a state's urban population influences philanthropic charter support, its racial and ethnic composition is not a significant predictor of grantmaking. This finding, again, confirms my theory that the abstract racial equality framing of the charter school advocacy coalition is more symbolic than substantive. [The dissertation citations contained here are published with the permission of ProQuest LLC. Further reproduction is prohibited without permission. Copies of dissertations may be obtained by Telephone (800) 1-800-521-0600. Web page: http://www.proquest.com/en-US/products/dissertations/individuals.shtml.]
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- 2020
113. What are the strategies for implementing primary care models in maternity? A systematic review on midwifery units
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Laura Batinelli, Ellen Thaels, Nathalie Leister, Christine McCourt, Manila Bonciani, and Lucia Rocca-Ihenacho
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Midwifery units ,Midwifery led care ,Birth centres ,Midwifery centres ,Primary care models ,Implementation ,Gynecology and obstetrics ,RG1-991 - Abstract
Abstract Background Midwifery Units (MUs) are associated with optimal perinatal outcomes, improved service users’ and professionals’ satisfaction as well as being the most cost-effective option. However, they still do not represent the mainstream option of maternity care in many countries. Understanding effective strategies to integrate this model of care into maternity services could support and inform the MU implementation process that many countries and regions still need to approach. Methods A systematic search and screening of qualitative and quantitative research about implementation of new MUs was conducted (Prospero protocol reference: CRD42019141443) using PRISMA guidelines. Included articles were appraised using the CASP checklist. A meta-synthesis approach to analysis was used. No exclusion criteria for time or context were applied to ensure inclusion of different implementation attempts even under different historical and social circumstances. A sensitivity analysis was conducted to reflect the major contribution of higher quality studies. Results From 1037 initial citations, twelve studies were identified for inclusion in this review after a screening process. The synthesis highlighted two broad categories: implementation readiness and strategies used. The first included aspects related to cultural, organisational and professional levels of the local context whilst the latter synthesised the main actions and key points identified in the included studies when implementing MUs. A logic model was created to synthesise and visually present the findings. Conclusions The studies selected were from a range of settings and time periods and used varying strategies. Nonetheless, consistencies were found across different implementation processes. These findings can be used in the systematic scaling up of MUs and can help in addressing barriers at system, service and individual levels. All three levels need to be addressed when implementing this model of care.
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- 2022
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114. Through the Eyes of Faculty: Using Personas as a Tool for Learner-Centered Professional Development
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Zagallo, Patricia, McCourt, Jill, Idsardi, Robert, Smith, Michelle K., Urban-Lurain, Mark, Andrews, Tessa C., Haudek, Kevin, Knight, Jennifer K., Merrill, John, Nehm, Ross, Prevost, Luanna B., and Lemons, Paula P.
- Abstract
College science instructors need continuous professional development (PD) to meet the call to evidence-based practice. New PD efforts need to focus on the nuanced blend of factors that influence instructors' teaching practices. We used persona methodology to describe the diversity among instructors who were participating in a long-term PD initiative. Persona methodology originates from ethnography. It takes data from product users and compiles those data in the form of fictional characters. Personas facilitate user-centered design. We identified four personas among our participants: Emma the Expert views herself as the subject-matter expert in the classroom and values her hard-earned excellence in lecturing. Ray the Relater relates to students and focuses on their points of view about innovative pedagogies. Carmen the Coach coaches her students by setting goals for them and helping them develop skill in scientific practices. Beth the Burdened owns the responsibility for her students' learning and feels overwhelmed that students still struggle despite her use of evidence-based practice. Each persona needs unique PD. We suggest ways that PD facilitators can use our personas as a reflection tool to determine how to approach the learners in their PD. We also suggest further avenues of research on learner-centered PD.
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- 2019
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115. Insulin is expressed by enteroendocrine cells during human fetal development
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Egozi, Adi, Llivichuzhca-Loja, Dhana, McCourt, Blake T., Bahar Halpern, Keren, Farack, Lydia, An, Xiaojing, Wang, Fujing, Chen, Kong, Konnikova, Liza, and Itzkovitz, Shalev
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- 2021
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116. Correction to: Association between Firearm Laws and Homicide in Urban Counties
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Crifasi, Cassandra K, Merrill-Francis, Molly, McCourt, Alex, Vernick, Jon S, Wintemute, Garen J, and Webster, Daniel W
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Public Health ,Health Sciences ,Peace ,Justice and Strong Institutions ,Human Movement and Sports Sciences ,Public Health and Health Services ,Public health - Abstract
The authors would like to publish this erratum to correct estimates generated from regression analyses due to errors discovered in the coding of some state laws.
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- 2018
117. Association between Firearm Laws and Homicide in Urban Counties
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Crifasi, Cassandra K, Merrill-Francis, Molly, McCourt, Alex, Vernick, Jon S, Wintemute, Garen J, and Webster, Daniel W
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Public Health ,Health Sciences ,Behavioral and Social Science ,Mental Health ,Peace ,Justice and Strong Institutions ,Adolescent ,Adult ,Female ,Firearms ,Gun Violence ,Homicide ,Humans ,Longitudinal Studies ,Male ,United States ,Urban Population ,Young Adult ,Gun policy ,Firearm ,Human Movement and Sports Sciences ,Public Health and Health Services ,Public health - Abstract
Laws related to the sale, use, and carrying of firearms have been associated with differences in firearm homicide rates at the state level. Right-to-carry (RTC) and stand your ground (SYG) laws are associated with increases in firearm homicide; permit-to-purchase (PTP) laws and those prohibiting individuals convicted of violent misdemeanors (VM) have been associated with decreases in firearm homicide. Evidence for the effect of comprehensive background checks (CBC) not tied to PTP is inconclusive. Because firearm homicide tends to concentrate in urban areas, this study was designed to test the effects of firearm laws on homicide in large, urban U.S. counties. We conducted a longitudinal study using an interrupted time series design to evaluate the effect of firearm laws on homicide in large, urban U.S. counties from 1984 to 2015 (N = 136). We used mixed effects Poisson regression models with random intercepts for counties and year fixed effects to account for national trends. Models also included county and state characteristics associated with violence. Homicide was stratified by firearm versus all other methods to test for specificity of the laws' effects. PTP laws were associated with a 14% reduction in firearm homicide in large, urban counties (IRR = 0.86, 95% CI 0.82-0.90). CBC-only, SYG, RTC, and VM laws were all associated with increases in firearm homicide. None of the laws were associated with differences in non-firearm homicide rates. These findings are consistent with prior research at the state level showing PTP laws are associated with decreased firearm homicide. Testing the effects of PTP laws specifically in large, urban counties strengthens available evidence by isolating the effects in the geographic locations in which firearm homicides concentrate.
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- 2018
118. Ultrasound Guided Placement of Single-Lumen Peripheral Intravenous Catheters in the Internal Jugular Vein
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Zitek, Tony, Busby, Elizabeth, Hudson, Heather, McCourt, John D., Baydoun, Jamie, and Slattery, David E.
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Ultrasound-guided IV ,peripheral IJ - Abstract
Introduction: The peripheral internal jugular (IJ), also called the “easy IJ,” is an alternative to peripheral venous access reserved for patients with difficult intravenous (IV) access. The procedure involves placing a single-lumen catheter in the IJ vein under ultrasound (US) guidance. As this technique is relatively new, the details regarding the ease of the procedure, how exactly it should be performed, and the safety of the procedure are uncertain. Our primary objective was to determine the success rate for peripheral IJ placement. Secondarily, we evaluated the time needed to complete the procedure and assessed for complications.Methods: This was a prospective, single-center study of US-guided peripheral IJ placement using a 2.5-inch, 18-gauge catheter on a convenience sample of patients with at least two unsuccessful attempts at peripheral IV placement by nursing staff. Peripheral IJ lines were placed by emergency medicine (EM) attending physicians and EM residents who had completed at least five IJ central lines. All physicians who placed lines for the study watched a 15-minute lecture about peripheral IJ technique. A research assistant monitored each line to assess for complications until the patient was discharged. Results: We successfully placed a peripheral IJ in 34 of 35 enrolled patients (97.1%). The median number of attempts required for successful cannulation was one (interquartile range (IQR): 1 to 2). The median time to successful line placement was 3 minutes and 6 seconds (IQR: 59 seconds to 4 minutes and 14 seconds). Two lines failed after placement, and one of the 34 successfully placed peripheral IJ lines (2.9%) had a complication – a local hematoma. There were, however, no arterial punctures or pneumothoraces. Although only eight of 34 lines were placed using sterile attire, there were no line infections. Conclusion: Our research adds to the growing body of evidence supporting US-guided peripheral internal jugular access as a safe and convenient procedure alternative for patients who have difficult IV access.
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- 2018
119. Inducing labour in the United Kingdom: A feminist critical discourse analysis of policy and guidance
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Cassandra Yuill, Mairi Harkness, Chlorice Wallace, Christine McCourt, Helen Cheyne, and Lia Litosseliti
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Induction of labour ,Health policy ,Feminist epistemology ,Critical discourse analysis ,United Kingdom ,Public aspects of medicine ,RA1-1270 - Abstract
Induction of labour (IOL), the process of starting labour artificially, is one of the most commonly performed procedures in maternity care in the United Kingdom (UK), yet there is debate whether inducing labour at ‘term’, in the absence of specific medical indication, is beneficial and reduces risk of stillbirth. Moreover, rates of routine IOL are rapidly rising in the UK, despite uncertainty about the evidence base and parents reporting receiving a lack of balanced information about the process. As a contested area of maternity care, the language used to debate, describe and discuss IOL takes on added significance and requires in-depth examination and analysis. To address this, we conducted a feminist critical discourse analysis on policy and professional writing about IOL in the UK, focusing on how these both reflect and construct social practices of pregnancy and birth. Our analysis identified a double discourse about IOL, which we term ‘explicit-implicit discourse of care’, revealing the differences between what is expected to be said and what is really said. Though most texts displayed an explicit discourse of care, which espoused women-centred care and informed choice, they also conveyed an implicit discourse of care, primarily composed of three key dimensions: women as absent actors, disembodiment, and evidence as a primary actor. We argue that this explicit-implicit discourse functions to preserve healthcare professionals' control over maternity care and further alienate women from their own bodies while maintaining a discursive position of women-centred care and informed choice.
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- 2022
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120. Community access to primary care is an important geographic disparity among ovarian cancer patients undergoing cytoreductive surgery
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Abigail S. Zamorano, Angela L. Mazul, Christine Marx, Mary M. Mullen, Molly Greenwade, L. Stewart Massad, Carolyn K. McCourt, Andrea R. Hagemann, Premal H. Thaker, Katherine C. Fuh, Matthew A. Powell, David G. Mutch, Dineo Khabele, and Lindsay M. Kuroki
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Ovarian cancer ,Geographic disparities ,Primary care access ,Postoperative complications ,Gynecology and obstetrics ,RG1-991 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Objective: Given the importance of understanding neighborhood context and geographic access to care on individual health outcomes, we sought to investigate the association of community primary care (PC) access on postoperative outcomes and survival in ovarian cancer patients. Methods: This was a retrospective cohort study of Stage III-IV ovarian cancer patients who underwent surgery at a single academic, tertiary care hospital between 2012 and 2015. PC access was determined using a Health Resources and Services Administration designation. Outcomes included 30-day surgical and medical complications, extended hospital stay, ICU admission, hospital readmission, progression-free and overall survival. Descriptive statistics and chi-squared analyses were used to analyze differences between patients from PC-shortage vs not PC-shortage areas. Results: Among 217 ovarian cancer patients, 54.4 % lived in PC-shortage areas. They were more likely to have Medicaid or no insurance and live in rural areas with higher poverty rates, significantly further from the treating cancer center and its affiliated hospital. Nevertheless, 49.2 % of patients from PC-shortage areas lived in urban communities. Residing in a PC-shortage area was not associated with increased surgical or medical complications, ICU admission, or hospital readmission, but was linked to more frequent prolonged hospitalization (26.3 % vs 14.1 %, p = 0.04). PC-shortage did not impact progression-free or overall survival. Conclusions: Patients from PC-shortage areas may require longer inpatient perioperative care in order to achieve the same 30-day postoperative outcomes as patients who live in non-PC shortage areas. Community access to PC is a critical factor to better understanding and reducing disparities among ovarian cancer patients.
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- 2022
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121. On Sizes of 1-Cross Intersecting Set Pair Systems
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Kostochka, A. V., McCourt, G., and Nahvi, M.
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- 2021
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122. From Mirrors to Windows: Lyman-Alpha Radiative Transfer in a Very Clumpy Medium
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Gronke, Max, Dijkstra, Mark, McCourt, Michael, and Oh, S. Peng
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Astrophysics - Astrophysics of Galaxies - Abstract
Lyman-Alpha (Ly$\alpha$) is the strongest emission line in the Universe and is frequently used to detect and study the most distant galaxies. Because Lya is a resonant line, photons typically scatter prior to escaping; this scattering process complicates the interpretation of Ly$\alpha$ spectra, but also encodes a wealth of information about the structure and kinematics of neutral gas in the galaxy. Modeling the Ly$\alpha$ line therefore allows us to study tiny-scale features of the gas, even in the most distant galaxies. Curiously, observed Ly$\alpha$ spectra can be modeled successfully with very simple, homogeneous geometries (such as an expanding, spherical shell), whereas more realistic, multiphase geometries often fail to reproduce the observed spectra. This seems paradoxical since the gas in galaxies is known to be multiphase. In this Letter, we show that spectra emerging from extremely clumpy geometries with many clouds along the line of sight converge to the predictions from simplified, homogeneous models. We suggest that this resolves the apparent discrepancy, and may provide a way to study the gas structure in galaxies on scales far smaller than can be probed in either cosmological simulations or direct (i.e., spatially-resolved) observations., Comment: 6 pages, 4 figures; submitted to ApJL
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- 2016
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123. A Characteristic Scale for Cold Gas
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McCourt, Michael, Oh, S. Peng, O'Leary, Ryan M., and Madigan, Ann-Marie
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Astrophysics - Astrophysics of Galaxies - Abstract
We find that clouds of optically-thin, pressure-confined gas are prone to fragmentation as they cool below $\sim10^6$ K. This fragmentation follows the lengthscale $\sim{c}_{\text{s}}\,t_{\text{cool}}$, ultimately reaching very small scales ($\sim{0.1} \text{pc}/n$) as they reach the temperature $\sim10^4$ K at which hydrogen recombines. While this lengthscale depends on the ambient pressure confining the clouds, we find that the column density through an individual fragment $N_{\text{cloudlet}}\sim10^{17} \text{cm}^{-3}$ is essentially independent of environment; this column density represents a characteristic scale for atomic gas at $10^4$ K. We therefore suggest that "clouds" of cold, atomic gas may in fact have the structure of a mist or a fog, composed of tiny fragments dispersed throughout the ambient medium. We show that this scale emerges in hydrodynamic simulations, and that the corresponding increase in the surface area may imply rapid entrainment of cold gas. We also apply it to a number of observational puzzles, including the large covering fraction of diffuse gas in galaxy halos, the broad line widths seen in quasar and AGN spectra, and the entrainment of cold gas in galactic winds. While our simulations make a number of assumptions and thus have associated uncertainties, we show that this characteristic scale is consistent with a number of observations, across a wide range of astrophysical environments. We discuss future steps for testing, improving, and extending our model., Comment: version with high resolution available at: http://web.physics.ucsb.edu/~peng/clumps.pdf
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- 2016
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124. Simulations of Magnetic Fields in Tidally-Disrupted Stars
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Guillochon, James and McCourt, Michael
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Astrophysics - High Energy Astrophysical Phenomena ,Astrophysics - Solar and Stellar Astrophysics - Abstract
We perform the first magnetohydrodynamical simulations of tidal disruptions of stars by supermassive black holes. We consider stars with both tangled and ordered magnetic fields, for both grazing and deeply disruptive encounters. When the star survives disruption, we find its magnetic field amplifies by a factor of up to twenty, but see no evidence for the a self-sustaining dynamo that would yield arbitrary field growth. For stars that do not survive, and within the tidal debris streams produced in partial disruptions, we find that the component of the magnetic field parallel to the direction of stretching along the debris stream only decreases slightly with time, eventually resulting in a stream where the magnetic pressure is in equipartition with the gas. Our results suggest that the returning gas in most (if not all) stellar tidal disruptions is already highly magnetized by the time it returns to the black hole., Comment: Accepted to ApJL. 7 pages, 4 figures
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- 2016
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125. On which groups can arise as the canonical group of a spherical latin bitrade
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Bonetta-Martin, Kyle and McCourt, Thomas A.
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Mathematics - Combinatorics ,05C10, 05C25, 05B15, 05C20 - Abstract
We address a question of Cavenagh and Wanless asking: which finite abelian groups arise as the canonical group of a spherical latin bitrade? We prove the existence of an infinite family of finite abelian groups that do not arise as canonical groups of spherical latin bitrades. Using a connection between abelian sandpile groups of digraphs underlying directed Eulerian spherical embeddings, we go on to provide several, general, families of finite abelian groups that do arise as canonical groups. These families include: any abelian group in which each component of the Smith Normal Form has composite order; any abelian group with Smith Normal Form $\mathbb{Z}^{n}_p\oplus\left(\bigoplus_{i=1}^k\mathbb{Z}_{pa_i}\right)$, where $1\leq k$, $2\leq a_1,a_2,\ldots, a_k,p$ and $n\leq 1+2\sum_{i=1}^k(a_i - 1)$; and with one exception and three potential exceptions any abelian group of rank two.
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- 2016
126. The Impact of Star Formation Feedback on the Circumgalactic Medium
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Fielding, Drummond, Quataert, Eliot, McCourt, Michael, and Thompson, Todd A.
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Astrophysics - Astrophysics of Galaxies ,Astrophysics - Cosmology and Nongalactic Astrophysics - Abstract
We use idealized 3D hydrodynamic simulations to study the dynamics and thermal structure of the circumgalactic medium (CGM). Our simulations quantify the role of cooling, stellar feedback driven galactic winds and cosmological gas accretion in setting the properties of the CGM in dark matter haloes ranging from $10^{11}$ to $10^{12}$ M$_\odot$. Our simulations support a conceptual picture in which the properties of the CGM, and the key physics governing it, change markedly near a critical halo mass of M$_{\rm crit} \approx 10^{11.5}$ M$_\odot$. As in calculations without stellar feedback, above M$_{\rm crit}$ halo gas is supported by thermal pressure created in the virial shock. The thermal properties at small radii are regulated by feedback triggered when $t_{\rm cool}/t_{\rm ff}\lesssim10$ in the hot gas. Below M$_{\rm crit}$, however, there is no thermally supported halo and self-regulation at $t_{\rm cool}/t_{\rm ff}\sim10$ does not apply. Instead, the gas is out of hydrostatic equilibrium and largely supported against gravity by bulk flows (turbulence and coherent inflow/outflow) arising from the interaction between cosmological gas inflow and outflowing galactic winds. In these lower mass haloes, the phase structure depends sensitively on the outflows' energy per unit mass and mass-loading, which may allow measurements of the CGM thermal state to constrain the nature of galactic winds. Our simulations account for some of the properties of the multiphase halo gas inferred from quasar absorption line observations, including the presence of significant mass at a wide range of temperatures, and the characteristic OVI and CIV column densities and kinematics. However, we underpredict the neutral hydrogen content of the $z\sim0$ CGM., Comment: accepted for publication in MNRAS, 19 pages, 18 figures, comments welcome
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- 2016
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127. Evaluation System for a Bayesian Optimization Service
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Dewancker, Ian, McCourt, Michael, Clark, Scott, Hayes, Patrick, Johnson, Alexandra, and Ke, George
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Computer Science - Learning - Abstract
Bayesian optimization is an elegant solution to the hyperparameter optimization problem in machine learning. Building a reliable and robust Bayesian optimization service requires careful testing methodology and sound statistical analysis. In this talk we will outline our development of an evaluation framework to rigorously test and measure the impact of changes to the SigOpt optimization service. We present an overview of our evaluation system and discuss how this framework empowers our research engineers to confidently and quickly make changes to our core optimization engine
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- 2016
128. A constructive characterisation of circuits in the simple $(2,1)$-sparse matroid
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McCourt, Thomas A and Nixon, Anthony
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Mathematics - Combinatorics ,52C25, 05C75 - Abstract
A simple graph $G=(V,E)$ is a $(2,1)$-circuit if $|E|=2|V|$ and $|E(H)|\leq 2|V(H)|-1$ for every proper subgraph $H$ of $G$. Motivated, in part, by ongoing work to understand unique realisations of graphs on surfaces, we derive a constructive characterisation of $(2,1)$-circuits. The characterisation uses the well known 1-extension and $X$-replacement operations as well as several summation moves to glue together $(2,1)$-circuits over small cutsets., Comment: 25 pages, 17 figures, revised following reviewer comments
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- 2016
129. A Stratified Analysis of Bayesian Optimization Methods
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Dewancker, Ian, McCourt, Michael, Clark, Scott, Hayes, Patrick, Johnson, Alexandra, and Ke, George
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Computer Science - Learning ,Statistics - Machine Learning - Abstract
Empirical analysis serves as an important complement to theoretical analysis for studying practical Bayesian optimization. Often empirical insights expose strengths and weaknesses inaccessible to theoretical analysis. We define two metrics for comparing the performance of Bayesian optimization methods and propose a ranking mechanism for summarizing performance within various genres or strata of test functions. These test functions serve to mimic the complexity of hyperparameter optimization problems, the most prominent application of Bayesian optimization, but with a closed form which allows for rapid evaluation and more predictable behavior. This offers a flexible and efficient way to investigate functions with specific properties of interest, such as oscillatory behavior or an optimum on the domain boundary.
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- 2016
130. Using gas clouds to probe the accretion flow around SgrA*: G2's delayed pericenter passage
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Madigan, Ann-Marie, McCourt, Michael, and O'Leary, Ryan
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Astrophysics - High Energy Astrophysical Phenomena - Abstract
We study the dynamical evolution of the putative gas clouds G1 and G2 recently discovered in the Galactic center. Following earlier studies suggesting that these two clouds are part of a larger gas streamer, we combine their orbits into a single trajectory. Since the gas clouds experience a drag force from background gas, this trajectory is not exactly Keplerian. By assuming the G1 and G2 clouds trace this trajectory, we fit for the drag force they experience and thus extract information about the accretion flow at a distance of thousands of Schwarzschild radii from the black hole. This range of radii is important for theories of black hole accretion, but is currently unconstrained by observations. In this paper we extend our previous work by accounting for radial forces due to possible inflow or outflow of the background gas. Such radial forces drive precession in the orbital plane, allowing a slightly better fit to the G1 and G2 data. This precession delays the pericenter passage of G2 by 4-5 months relative to estimates derived from a Keplerian orbital fit; if it proves possible to identify the pericenter time observationally, this enables an immediate test of whether G1 and G2 are gas clouds part of a larger gas streamer. If G2 is indeed a gas cloud, its closest approach likely occurred in late summer 2014, after many of the observing campaigns monitoring G2's anticipated pericenter passage ended. We discuss how this affects interpretation of the G2 observations., Comment: 9 pages, submitted to MNRAS
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- 2016
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131. Gynecologic oncology patient perspectives and knowledge on advance care planning: A quality improvement intervention
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Sarah P. Huepenbecker, Sophia Lewis, Mark C. Valentine, Marguerite L. Palisoul, Premal H. Thaker, Andrea R. Hagemann, Carolyn K. McCourt, Katherine C. Fuh, Matthew A. Powell, David G. Mutch, and Lindsay M. Kuroki
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Advanced care planning ,Communication ,Gynecologic cancer ,Quality Improvement ,Implementation ,Gynecology and obstetrics ,RG1-991 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Objectives: Assess and improve advance care planning (ACP) awareness and uptake among gynecologic oncology patients. Methods: Using a quality improvement Plan-Do-Check-Act framework, we completed a single institution needs assessment and intervention. The needs assessment was a 26-question survey assessing baseline ACP knowledge and preferences of gynecologic oncology patients. We used this survey to implement an outpatient intervention in which patients were offered ACP resources (pamphlet, discussion with their gynecologic oncologist, and/or social work referral). We conducted a post-intervention survey among patients who had and had not received ACP resource(s) to assess whether our intervention increased ACP knowledge, discussions, or uptake. Results: Among 106 patients surveyed in the needs assessment, 33 % had ACP documents, 26 % had discussed ACP with a physician, and 82 % thought discussing ACP was important. The majority preferred these conversations in the outpatient setting (52 %) with their gynecologic oncologist (80 %) instead of nurses or trainees. In the intervention, 526 patients were offered ACP resources. Compared to women who did not receive resources (n = 324), patients who received ACP resource(s) (n = 202) were more likely to have ACP discussions with their gynecologic oncologist (38 % vs 68 %, P = 0.001) and had greater proficiency regarding how to create ACP documents (median score 5/10 vs 8/10, P = 0.048), although they were no more likely to have ACP documented in their electronic medical record (27 % vs 9 %, p = 0.08). Conclusions: ACP uptake among gynecologic oncology patients is low, but ACP discussions with an oncologist during outpatient visits are important to patients and improve their knowledge regarding completing ACP documents.
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- 2022
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132. Framework for developing an exposure science curriculum as part of the European Exposure Science Strategy 2020–2030
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Alison Connolly, Paul T.J. Scheepers, Marie A. Coggins, Theo Vermeire, Martie van Tongeren, Gerhard Heinemeyer, James W. Bridges, Susanne Bredendiek-Kämper, Yuri Bruinen de Bruin, Anne Clayson, Johannes Gerding, Josephine McCourt, Jan Urbanus, Susana Viegas, Natalie von Goetz, Maryam Zare-Jeddi, and Peter Fantke
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Exposure assessment ,Education and training ,Learning outcomes ,ISES Europe ,Competence development ,Environmental sciences ,GE1-350 - Abstract
Background: Evaluating and managing exposures to chemical, physical and biological stressors, which frequently interplay with psychological stressors as well as social and behavioural aspects, is crucial for protecting human and environmental health and transitioning towards a sustainable future. Advances in our understanding of exposure rely on input from well-trained exposure scientists. However, no education programmes in Europe are currently explicitly dedicated to cover the broader range of exposure science approaches, applications, stressors and receptors. Objective: To address this challenge, a curriculum is needed that yields credible, well-defined career pathways in exposure science. Methods: Needs and conditions for advancing exposure science education in Europe were identified. As a starting point for a way forward, harmonised learning outcomes for exposure science were defined at each level of the European Qualifications Framework. The course programme coordinators were recruited for three varying courses, with respect to the course level and the proportion of the curriculum dedicated to exposure science. These courses were assessed via our systematic course review procedure. Finally, strategic objectives and actions are proposed to build exposure science education programmes. Results: The ISES Europe ‘Education, Training and Communication’ expert working group developed a framework for creating a viable exposure science curriculum. Harmonised learning outcomes were structured under eight learning levels, categorised by knowledge, skills and competence. Illustrative case studies demonstrated how education providers integrated these learning outcomes for their educational context and aligned the overall exposure science curriculum. Conclusions: The international recognition and adoption of exposure science education will enable advances in addressing global exposure science challenges for various stressors, from behavioural aspects from individual to population scale, and effective communication between exposure scientists and relevant stakeholders and policy makers, as part of the European Exposure Science Strategy 2020–2030.
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- 2022
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133. Cognitive and psychiatric symptom trajectories 2–3 years after hospital admission for COVID-19: a longitudinal, prospective cohort study in the UK
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Taquet, Maxime, Skorniewska, Zuzanna, De Deyn, Thomas, Hampshire, Adam, Trender, William R, Hellyer, Peter J, Chalmers, James D, Ho, Ling-Pei, Horsley, Alex, Marks, Michael, Poinasamy, Krisnah, Raman, Betty, Leavy, Olivia C, Richardson, Matthew, Elneima, Omer, McAuley, Hamish J C, Shikotra, Aarti, Singapuri, Amisha, Sereno, Marco, Saunders, Ruth M, Harris, Victoria C, Rogers, Natalie, Houchen-Wolloff, Linzy, Greening, Neil J, Mansoori, Parisa, Harrison, Ewen M, Docherty, Annemarie B, Lone, Nazir I, Quint, Jennifer, Brightling, Christopher E, Wain, Louise V, Evans, Rachael A, Geddes, John R, Harrison, Paul J, Lone, Nazir, Baillie, Kenneth, Pairo-Castineira, Erola, Avramidis, Nikos, Wain, Louise, Guillen-Guio, Beatriz, Leavy, Olivia, Jones, S, Armstrong, Lisa, Hairsine, Brigid, Henson, Helen, Kurasz, Claire, Shaw, Alison, Shenton, Liz, Dobson, Hannah, Dell, Amanda, Fairbairn, Sara, Hawkings, Nancy, Haworth, Jill, Hoare, Michaela, Lewis, Victoria, Lucey, Alice, Mallison, Georgia, Nassa, Heeah, Pennington, Chris, Price, Andrea, Price, Claire, Storrie, Andrew, Willis, Gemma, Young, Susan, Poinasamy, Krisnah, Walker, Samantha, Jarrold, Ian, Rawlik, Konrad, Sanderson, Amy, Chong-James, K, David, C, James, W Y, Pfeffer, Paul, Zongo, O, Martineau, Adrian, Manisty, C, Armour, Cherie, Brown, Vanessa, Busby, John, Connolly, Bronwen, Craig, Thelma, Drain, Stephen, Heaney, Liam, King, Bernie, Magee, Nick, Major, E, McAulay, Danny, McGarvey, Lorcan, McGinness, Jade, Peto, Tunde, Stone, Roisin, Bolger, Annette, Davies, Ffyon, Haggar, Ahmed, Lewis, Joanne, Lloyd, Arwel, Manley, R, McIvor, Emma, Menzies, Daniel, Roberts, K, Saxon, W, Southern, David, Subbe, Christian, Whitehead, Victoria, Bularga, Anda, Mills, Nicholas, Dawson, Joy, El-Taweel, Hosni, Robinson, Leanne, Brear, Lucy, Regan, Karen, Saralaya, Dinesh, Storton, Kim, Amoils, Shannon, Bermperi, Areti, Cruz, Isabel, Dempsey, K, Elmer, Anne, Fuld, Jonathon, Jones, H, Jose, Sherly, Marciniak, Stefan, Parkes, M, Ribeiro, Carla, Taylor, Jessica, Toshner, Mark, Watson, L, Worsley, J, Broad, Lauren, Evans, Teriann, Haynes, Matthew, Jones, L, Knibbs, Lucy, McQueen, Alison, Oliver, Catherine, Paradowski, Kerry, Sabit, Ramsey, Williams, Jenny, Jones, Ian, Milligan, Lea, Harris, Edward, Sampson, Claire, Davies, Ellie, Evenden, Cerys, Hancock, Alyson, Hancock, Kia, Lynch, Ceri, Rees, Meryl, Roche, Lisa, Stroud, Natalie, Thomas-Woods, T, Heller, Simon, Chalder, Trudie, Shah, Kamini, Robertson, Elizabeth, Young, Bob, Babores, Marta, Holland, Maureen, Keenan, Natalie, Shashaa, Sharlene, Wassall, Helen, Austin, Liam, Beranova, Eva, Cosier, Tracey, Deery, Joanne, Hazelton, Tracy, Price, Carly, Ramos, Hazel, Solly, Reanne, Turney, Sharon, Weston, Heather, Coughlan, Eamon, Ralser, Markus, Pearce, Lorraine, Pugmire, S, Stoker, Wendy, Wilson, Ann, McCormick, W, Fraile, Eva, Ugoji, Jacinta, Aguilar Jimenez, Laura, Arbane, Gill, Betts, Sarah, Bisnauthsing, Karen, Dewar, A, Hart, Nicholas, Kaltsakas, G, Kerslake, Helen, Magtoto, Murphy, Marino, Philip, Martinez, L M, Ostermann, Marlies, Rossdale, Jennifer, Solano, Teresa, Alvarez Corral, Maria, Arias, Ava Maria, Bevan, Emily, Griffin, Denise, Martin, Jane, Owen, J, Payne, Sheila, Prabhu, A, Reed, Annabel, Storrar, Will, Williams, Nick, Wrey Brown, Caroline, Burdett, Tracy, Featherstone, James, Lawson, Cathy, Layton, Alison, Mills, Clare, Stephenson, Lorraine, Ellis, Yvette, Atkin, Paul, Brindle, K, Crooks, Michael, Drury, Katie, Easom, Nicholas, Flockton, Rachel, Holdsworth, L, Richards, A, Sykes, D L, Thackray-Nocera, Susannah, Wright, C, Coetzee, S, Davies, Kim, Hughes, Rachel Ann, Loosley, Ronda, McGuinness, Heather, Mohamed, Abdelrahman, O'Brien, Linda, Omar, Zohra, Perkins, Emma, Phipps, Janet, Ross, Gavin, Taylor, Abigail, Tench, Helen, Wolf-Roberts, Rebecca, Burden, L, Calvelo, Ellen, Card, Bethany, Carr, Caitlin, Chilvers, Edwin, Copeland, Donna, Cullinan, P, Daly, Patrick, Evison, Lynsey, Fayzan, Tamanah, Gordon, Hussain, Haq, Sulaimaan, Jenkins, Gisli, King, Clara, Kon, Onn Min, March, Katherine, Mariveles, Myril, McLeavey, Laura, Mohamed, Noura, Moriera, Silvia, Munawar, Unber, Nunag, Jose Lloyd, Nwanguma, Uchechi, Orriss-Dib, Lorna, Ross, Alexandra, Roy, Maura, Russell, Emily, Samuel, Katherine, Schronce, J, Simpson, Neil, Tarusan, Lawrence, Thomas, David, Wood, Chloe, Yasmin, Najira, Altmann, Danny, Howard, Luke, Johnston, Desmond, Lingford-Hughes, Anne, Man, William, Mitchell, Jane, Molyneaux, Philip, Nicolaou, Christos, O'Regan, D P, Price, L, Quint, Jenni, Smith, David, Thwaites, Ryan, Valabhji, Jonathon, Walsh, Simon, Efstathiou, Claudia, Liew, Felicity, Frankel, Anew, Lightstone, Liz, McAdoo, Steve, Wilkins, Martin, Willicombe, Michelle, Touyz, R, Guerdette, Anne-Marie, Hewitt, Melanie, Reddy, R, Warwick, Katie, White, Sonia, McMahon, Aisling, Adeyemi, Oluwaseun, Adrego, Rita, Assefa-Kebede, Hosanna, Breeze, Jonathon, Byrne, S, Dulawan, Pearl, Hoare, Amy, Jolley, Caroline, Knighton, Abigail, Patale, Sheetal, Peralta, Ida, Powell, Natassia, Ramos, Albert, Shevket, K, Speranza, Fabio, Te, Amelie, Malim, M, Bramham, Kate, Brown, M, Ismail, Khalida, Nicholson, Tim, Pariante, Carmen, Sharpe, Claire, Wessely, Simon, Whitney, J, Shah, Ajay, Chiribiri, A, O'Brien, C, Hayday, A, Ashworth, Andrew, Beirne, Paul, Clarke, Jude, Coupland, C, Dalton, Matthhew, Favager, Clair, Glossop, Jodie, Greenwood, John, Hall, Lucy, Hardy, Tim, Humphries, Amy, Murira, Jennifer, Peckham, Dan, Plein, S, Rangeley, Jade, Saalmink, Gwen, Tan, Ai Lyn, Wade, Elaine, Whittam, Beverley, Window, Nicola, Woods, Janet, Coakley, G, Turtle, Lance, Allerton, Lisa, Allt, Ann Marie, Beadsworth, M, Berridge, Anthony, Brown, Jo, Cooper, Shirley, Cross, Andy, Defres, Sylviane, Dobson, S L, Earley, Joanne, French, N, Greenhalf, William, Hainey, Kera, Hardwick, Hayley, Hawkes, Jenny, Highett, Victoria, Kaprowska, Sabina, Key, Angela, Lavelle-Langham, Lara, Lewis-Burke, N, Madzamba, Gladys, Malein, Flora, Marsh, Sophie, Mears, Chloe, Melling, Lucy, Noonan, Matthew, Poll, L, Pratt, James, Richardson, Emma, Rowe, Anna, Semple, Calum, Shaw, Victoria, Tripp, K A, Wajero, Lilian, Williams-Howard, S A, Wootton, Dan, Wyles, J, Diwanji, Shalin, Gurram, Sambasivarao, Papineni, Padmasayee, Quaid, Sheena, Tiongson, Gerlynn, Watson, Ekaterina, Briggs, Andrew, Marks, Michael, Hastie, Claire, Rogers, Natalie, Smith, Nikki, Stensel, David, Bishop, Lettie, McIvor, Katherine, Rivera-Ortega, Pilar, Al-Sheklly, Bashar, Avram, Cristina, Blaikely, John, Buch, M, Choudhury, N, Faluyi, David, Felton, T, Gorsuch, T, Hanley, Neil, Horsley, Alex, Hussell, Tracy, Kausar, Zunaira, Odell, Natasha, Osbourne, Rebecca, Piper Hanley, Karen, Radhakrishnan, K, Stockdale, Sue, Kabir, Thomas, Scott, Janet, Stewart, Iain, Openshaw, Peter, Burn, David, Ayoub, A, Brown, J, Burns, G, Davies, Gareth, De Soyza, Anthony, Echevarria, Carlos, Fisher, Helen, Francis, C, Greenhalgh, Alan, Hogarth, Philip, Hughes, Joan, Jiwa, Kasim, Jones, G, MacGowan, G, Price, D, Sayer, Avan, Simpson, John, Tedd, H, Thomas, S, West, Sophie, Witham, M, Wright, S, Young, A, McMahon, Michael, Neill, Paula, Anderson, David, Basu, Neil, Bayes, Hannah, Brown, Ammani, Dougherty, Andrew, Fallon, K, Gilmour, L, Grieve, D, Mangion, K, Morrow, A, Sykes, R, Berry, Colin, McInnes, I B, Scott, Kathryn, Barrett, Fiona, Donaldson, A, Sage, Beth, Bell, Murdina, Brown, Angela, Brown, M, Hamil, R, Leitch, Karen, Macliver, L, Patel, Manish, Quigley, Jackie, Smith, Andrew, Welsh, B, Choudhury, Gaunab, Clohisey, S, Deans, Andrew, Docherty, Annemarie, Furniss, J, Harrison, Ewen, Kelly, S, Sheikh, Aziz, Chalmers, James, Connell, David, Deas, C, Elliott, Anne, George, J, Mohammed, S, Rowland, J, Solstice, AR, Sutherland, Debbie, Tee, Caroline, Bunker, Jenny, Gill, Rhyan, Nathu, Rashmita, Holmes, Katie, Adamali, H, Arnold, David, Barratt, Shaney, Dipper, A, Dunn, Sarah, Maskell, Nick, Morley, Anna, Morrison, Leigh, Stadon, Louise, Waterson, Samuel, Welch, H, Jayaraman, Bhagy, Light, Tessa, Vogiatzis, Ioannis, Almeida, Paula, Bolton, Charlotte, Hosseini, Akram, Matthews, Laura, Needham, Robert, Shaw, Karen, Thomas, Andrew, Bonnington, J, Chrystal, Melanie, Dupont, Catherine, Greenhaff, Paul, Gupta, Ayushman, Jang, W, Linford, S, Nikolaidis, Athanasios, Prosper, Sabrina, Burns, A, Kanellakis, N, Ferreira, V, Nikolaidou, C, Xie, C, Ainsworth, Mark, Alamoudi, Asma, Bloss, Angela, Carter, Penny, Cassar, M, Chen, Jin, Conneh, Florence, Dong, T, Evans, Ranuromanana, Fraser, Emily, Geddes, John, Gleeson, F, Harrison, Paul, Havinden-Williams, May, Ho, Ling Pei, Jezzard, P, Koychev, Ivan, Kurupati, Prathiba, McShane, H, Megson, Clare, Neubauer, Stefan, Nicoll, Debby, Ogg, G, Pacpaco, Edmund, Pavlides, M, Peng, Yanchun, Petousi, Nayia, Pimm, John, Rahman, Najib, Raman, Betty, Rowland, M J, Saunders, Kathryn, Sharpe, Michael, Talbot, Nick, Tunnicliffe, E M, Korszun, Ania, Kerr, Steven, Barker, R E, Cristiano, Daniele, Dormand, N, George, P, Gummadi, Mahitha, Kon, S, Liyanage, Kamal, Nolan, C M, Patel, B, Patel, Suhani, Polgar, Oliver, Price, L, Shah, P, Singh, Suver, Walsh, J A, Gibbons, Michael, Ahmad, Shanaz, Brill, Simon, Hurst, John, Jarvis, Hannah, Lim, Lai, Mandal, S, Matila, Darwin, Olaosebikan, Olaoluwa, Singh, Claire, Laing, C, Baxendale, Helen, Garner, Lucie, Johnson, C, Mackie, J, Michael, Alice, Newman, J, Pack, Jamie, Paques, K, Parfrey, H, Parmar, J, Reddy, A, Halling-Brown, Mark, Dark, P, Diar-Bakerly, Nawar, Evans, D, Hardy, E, Harvey, Alice, Holgate, D, Knight, Sean, Mairs, N, Majeed, N, McMorrow, L, Oxton, J, Pendlebury, Jessica, Summersgill, C, Ugwuoke, R, Whittaker, S, Matimba-Mupaya, Wadzanai, Strong-Sheldrake, Sophia, Chowienczyk, Phillip, Bagshaw, J, Begum, M, Birchall, K, Butcher, Robyn, Carborn, H, Chan, Flora, Chapman, Kerry, Cheng, Yutung, Chetham, Luke, Clark, Cameron, Coburn, Zach, Cole, Joby, Dixon, Myles, Fairman, Alexandra, Finnigan, J, Foot, H, Foote, David, Ford, Amber, Gregory, Rebecca, Harrington, Kate, Haslam, L, Hesselden, L, Hockridge, J, Holbourn, Ailsa, Holroyd-Hind, B, Holt, L, Howell, Alice, Hurditch, E, Ilyas, F, Jarman, Claire, Lawrie, Allan, Lee, Ju Hee, Lee, Elvina, Lenagh, Rebecca, Lye, Alison, Macharia, Irene, Marshall, M, Mbuyisa, Angeline, McNeill, J, Megson, Sharon, Meiring, J, Milner, L, Misra, S, Newell, Helen, Newman, Tom, Norman, C, Nwafor, Lorenza, Pattenadk, Dibya, Plowright, Megan, Porter, Julie, Ravencroft, Phillip, Roddis, C, Rodger, J, Rowland-Jones, Sarah, Saunders, Peter, Sidebottom, J, Smith, Jacqui, Smith, Laurie, Steele, N, Stephens, G, Stimpson, R, Thamu, B, Thompson, A. A. Roger, Tinker, N, Turner, Kim, Turton, Helena, Wade, Phillip, Walker, S, Watson, James, Wilson, Imogen, Zawia, Amira, Allsop, Lynne, Bennett, Kaytie, Buckley, Phil, Flynn, Margaret, Gill, Mandy, Goodwin, Camelia, Greatorex, M, Gregory, Heidi, Heeley, Cheryl, Holloway, Leah, Holmes, Megan, Hutchinson, John, Kirk, Jill, Lovegrove, Wayne, Sewell, Terri Ann, Shelton, Sarah, Sissons, D, Slack, Katie, Smith, Susan, Sowter, D, Turner, Sarah, Whitworth, V, Wynter, Inez, Tomlinson, Johanne, Warburton, Louise, Painter, Sharon, Palmer, Sue, Redwood, Dawn, Tilley, Jo, Vickers, Carinna, Wainwright, Tania, Breen, G, Hotopf, M, Aul, Raminder, Forton, D, Ali, Mariam, Dunleavy, A, Mencias, Mark, Msimanga, N, Samakomva, T, Siddique, Sulman, Tavoukjian, Vera, Teixeira, J, Ahmed, Rubina, Francis, Richard, Connor, Lynda, Cook, Amanda, Davies, Gwyneth, Rees, Tabitha, Thaivalappil, Favas, Thomas, Caradog, McNarry, M, Williams, N, Lewis, Keir, Coulding, Martina, Jones, Heather, Kilroy, Susan, McCormick, Jacqueline, McIntosh, Jerome, Turner, Victoria, Vere, Joanne, Butt, Al-Tahoor, Savill, Heather, Kon, Samantha, Landers, G, Lota, Harpreet, Portukhay, Sofiya, Nasseri, Mariam, Daniels, Alison, Hormis, Anil, Ingham, Julie, Zeidan, Lisa, Chablani, Manish, Osborne, Lynn, Aslani, Shahab, Banerjee, Amita, Batterham, R, Baxter, Gabrielle, Bell, Robert, David, Anthony, Denneny, Emma, Hughes, Alun, Lilaonitkul, W, Mehta, P, Pakzad, Ashkan, Rangelov, Bojidar, Williams, B, Willoughby, James, Xu, Moucheng, Ahwireng, Nyarko, Bang, Dongchun, Basire, Donna, Brown, Jeremy, Chambers, Rachel, Checkley, A, Evans, R, Heightman, M, Hillman, T, Jacob, Joseph, Jastrub, Roman, Lipman, M, Logan, S, Lomas, D, Merida Morillas, Marta, Plant, Hannah, Porter, Joanna, Roy, K, Wall, E, Treibel, T, Ahmad Haider, N, Atkin, Catherine, Baggott, Rhiannon, Bates, Michelle, Botkai, A, Casey, Anna, Cooper, B, Dasgin, Joanne, Dawson, Camilla, Draxlbauer, Katharine, Gautam, N, Hazeldine, J, Hiwot, T, Holden, Sophie, Isaacs, Karen, Jackson, T, Kamwa, Vicky, Lewis, D, Lord, Janet, Madathil, S, McGee, C, Mcgee, K, Neal, Aoife, Newton-Cox, Alex, Nyaboko, Joseph, Parekh, Dhruv, Peterkin, Z, Qureshi, H, Ratcliffe, Liz, Sapey, Elizabeth, Short, J, Soulsby, Tracy, Stockley, J, Suleiman, Zehra, Thompson, Tamika, Ventura, Maximina, Walder, Sinead, Welch, Carly, Wilson, Daisy, Yasmin, S, Yip, Kay Por, Chaudhuri, N, Childs, Caroline, Djukanovic, R, Fletcher, S, Harvey, Matt, Jones, Mark, Marouzet, Elizabeth, Marshall, B, Samuel, Reena, Sass, T, Wallis, Tim, Wheeler, Helen, Steeds, R, Beckett, Paul, Dickens, Caroline, Nanda, Uttam, Aljaroof, M, Armstrong, Natalie, Arnold, H, Aung, Hnin, Bakali, Majda, Bakau, M, Baldry, E, Baldwin, Molly, Bourne, Charlotte, Bourne, Michelle, Brightling, Chris, Brunskill, Nigel, Cairns, P, Carr, Liesel, Charalambou, Amanda, Christie, C, Davies, Melanie, Daynes, Enya, Diver, Sarah, Dowling, Rachael, Edwards, Sarah, Edwardson, C, Elneima, Omer, Evans, H, Evans, Rachael, Finch, J, Glover, Sarah, Goodman, Nicola, Gooptu, Bibek, Greening, Neil, Hadley, Kate, Haldar, Pranab, Hargadon, Beverley, Harris, Victoria, Houchen-Wolloff, Linzy, Ibrahim, W, Ingram, L, Khunti, Kamlesh, Lea, A, Lee, D, McAuley, Hamish, McCann, Gerry, McCourt, P, Mcnally, Teresa, Mills, George, Monteiro, Will, Pareek, Manish, Parker, S, Prickett, Anne, Qureshi, I N, Rowland, A, Russell, Richard, Sereno, Marco, Shikotra, Aarti, Siddiqui, Salman, Singapuri, Ananga, Singh, Sally, Skeemer, J, Soares, M, Stringer, E, Thornton, T, Tobin, Martin, Ward, T J C, Woodhead, F, Yates, Tom, Yousuf, A J, Broome, Mattew, McArdle, Paul, Thickett, David, Upthegrove, Rachel, Wilkinson, Dan, Moss, Paul, Wraith, David, Evans, Jonathon, Bullmore, Ed, Heeney, Jonathon, Langenberg, Claudia, Schwaeble, William, Summers, Charlotte, Weir McCall, J, Adeloye, Davies, Newby, D E, Pius, Riinu, Rudan, Igor, Shankar-Hari, Manu, Sudlow, Catherine, Thorpe, Mat, Walmsley, Sarah, Zheng, Bang, Allan, Louise, Ballard, Clive, McGovern, Andrew, Dennis, J, Cavanagh, Jonathon, MacDonald, S, O'Donnell, Kate, Petrie, John, Sattar, Naveed, Spears, Mark, Guthrie, Elspeth, Henderson, Max, Allen, Richard, Bingham, Michelle, Brugha, Terry, Finney, Selina, Free, Rob, Jones, Don, Lawson, Claire, Lucy, Gardiner, Moss, Alistair, Mukaetova-Ladinska, Elizabeta, Novotny, Petr, Overton, Charlotte, Pearl, John, Plekhanova, Tatiana, Richardson, M, Samani, Nilesh, Sargant, Jack, Sharma, M, Steiner, Mike, Taylor, Chris, Terry, Sarah, Tong, C, Turner, E, Wormleighton, J, Zhao, Bang, Ntotsis, Kimon, Saunders, Ruth, Lozano-Rojas, Daniel, Goemans, Anne, Cuthbertson, D, Kemp, G, McArdle, Anne, Michael, Benedict, Reynolds, Will, Spencer, Lisa, Vinson, Ben, Ashworth, M, Abel, Kathryn, Chinoy, H, Deakin, Bill, Harvie, M, Miller, C A, Stanel, Stefan, Barran, Perdita, Trivedi, Drupad, McAllister-Williams, Hamish, Paddick, Stella-Maria, Rostron, Anthony, Taylor, John Paul, Baguley, David, Coleman, Chris, Cox, E, Fabbri, Laura, Francis, Susan, Hall, Ian, Hufton, E, Johnson, Simon, Khan, Fasih, Kitterick, Paaig, Morriss, Richard, Selby, Nick, Wright, Louise, Antoniades, Charalambos, Bates, A, Beggs, M, Bhui, Kamaldeep, Breeze, Katie, Channon, K M, Clark, David, Fu, X, Husain, Masud, Li, X, Lukaschuk, E, McCracken, Celeste, McGlynn, K, Menke, R, Motohashi, K, Nichols, T E, Ogbole, Godwin, Piechnik, S, Propescu, I, Propescu, J, Samat, A A, Sanders, Z B, Sigfrid, Louise, Webster, M, Kingham, Lucy, Klenerman, Paul, Lamlum, Hanan, Taquet, Maxime, Carson, G, Finnigan, L, Saunders, Laura, Wild, James, Calder, P C, Huneke, Nathan, Simons, Gemma, Baldwin, David, Bain, Steve, Daines, Luke, Bright, E, Crisp, P, Dharmagunawardena, Ruvini, Stern, M, Bailey, Elisabeth, Reddington, Anne, Wight, Andrew, Ashish, A, Cooper, Josh, Robinson, Emma, Broadley, Andrew, Barman, Laura, Brookes, Claire, Elliott, K, Griffiths, L, Guy, Zoe, Howard, Kate, Ionita, Diana, Redfearn, Heidi, Sarginson, Carol, and Turnbull, Alison
- Abstract
COVID-19 is known to be associated with increased risks of cognitive and psychiatric outcomes after the acute phase of disease. We aimed to assess whether these symptoms can emerge or persist more than 1 year after hospitalisation for COVID-19, to identify which early aspects of COVID-19 illness predict longer-term symptoms, and to establish how these symptoms relate to occupational functioning.
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- 2024
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134. Accurately computing the electronic properties of a quantum ring
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Neill, C., McCourt, T., Mi, X., Jiang, Z., Niu, M. Y., Mruczkiewicz, W., Aleiner, I., Arute, F., Arya, K., Atalaya, J., Babbush, R., Bardin, J. C., Barends, R., Bengtsson, A., Bourassa, A., Broughton, M., Buckley, B. B., Buell, D. A., Burkett, B., Bushnell, N., Campero, J., Chen, Z., Chiaro, B., Collins, R., Courtney, W., Demura, S., Derk, A. R., Dunsworth, A., Eppens, D., Erickson, C., Farhi, E., Fowler, A. G., Foxen, B., Gidney, C., Giustina, M., Gross, J. A., Harrigan, M. P., Harrington, S. D., Hilton, J., Ho, A., Hong, S., Huang, T., Huggins, W. J., Isakov, S. V., Jacob-Mitos, M., Jeffrey, E., Jones, C., Kafri, D., Kechedzhi, K., Kelly, J., Kim, S., Klimov, P. V., Korotkov, A. N., Kostritsa, F., Landhuis, D., Laptev, P., Lucero, E., Martin, O., McClean, J. R., McEwen, M., Megrant, A., Miao, K. C., Mohseni, M., Mutus, J., Naaman, O., Neeley, M., Newman, M., O’Brien, T. E., Opremcak, A., Ostby, E., Pató, B., Petukhov, A., Quintana, C., Redd, N., Rubin, N. C., Sank, D., Satzinger, K. J., Shvarts, V., Strain, D., Szalay, M., Trevithick, M. D., Villalonga, B., White, T. C., Yao, Z., Yeh, P., Zalcman, A., Neven, H., Boixo, S., Ioffe, L. B., Roushan, P., Chen, Y., and Smelyanskiy, V.
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- 2021
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135. Adult Comorbidity Evaluation 27 score as a predictor of survival in endometrial cancer patients
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Binder, Pratibha S, Peipert, Jeffrey F, Kallogjeri, D, Brooks, Rebecca A, Massad, L Stewart, Mutch, David G, Powell, Matthew A, Thaker, Premal H, and McCourt, Carolyn K
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Prevention ,Cancer ,Clinical Research ,Uterine Cancer ,Adenocarcinoma ,Clear Cell ,Adult ,Aged ,Aged ,80 and over ,Carcinoma ,Endometrioid ,Chemoradiotherapy ,Adjuvant ,Chemotherapy ,Adjuvant ,Cohort Studies ,Comorbidity ,Endometrial Neoplasms ,Female ,Humans ,Hysterectomy ,Middle Aged ,Multivariate Analysis ,Neoplasm Staging ,Neoplasms ,Cystic ,Mucinous ,and Serous ,Prognosis ,Proportional Hazards Models ,Registries ,Retrospective Studies ,Young Adult ,comorbidity ,endometrial cancer ,survival ,Paediatrics and Reproductive Medicine ,Obstetrics & Reproductive Medicine - Abstract
BackgroundThe incidence of endometrial cancer increases with age and is associated with medical comorbidities such as obesity and diabetes. Although a few cohort studies of
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- 2016
136. Effect of moderate to high intensity aerobic exercise on blood pressure in young adults: The TEPHRA open, two-arm, parallel superiority randomized clinical trial
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Wilby Williamson, Adam James Lewandowski, Odaro John Huckstep, Winok Lapidaire, Alexander Ooms, Cheryl Tan, Afifah Mohamed, Maryam Alsharqi, Mariane Bertagnolli, William Woodward, Cameron Dockerill, Annabelle McCourt, Yvonne Kenworthy, Holger Burchert, Aiden Doherty, Julia Newton, Henner Hanssen, John Kennedy Cruickshank, Richard McManus, Jane Holmes, Chen Ji, Sharon Love, Elena Frangou, Colin Everett, Melvyn Hillsdon, Helen Dawes, Charlie Foster, and Paul Leeson
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Hypertension ,Prevention ,Cardiovascular risk ,Blood pressure ,High blood pressure ,Lifestyle intervention ,Medicine (General) ,R5-920 - Abstract
Summary: Background: Exercise is advised for young adults with elevated blood pressure, but no trials have investigated efficacy at this age. We aimed to determine whether aerobic exercise, self-monitoring and motivational coaching lowers blood pressure in this group. Methods: The study was a single-centre, open, two-arm, parallel superiority randomized clinical trial with open community-based recruitment of physically-inactive 18–35 year old adults with awake 24 h blood pressure 115/75mmHg-159/99 mmHg and BMI37 weeks) to the intervention group, who received 16-weeks aerobic exercise training (three aerobic training sessions per week of 60 min per session at 60–80% peak heart rate, physical activity self-monitoring with encouragement to do 10,000 steps per day and motivational coaching to maintain physical activity upon completion of the intervention. The control group were sign-posted to educational materials on hypertension and recommended lifestyle behaviours. Investigators performing statistical analyses were blinded to group allocation. The primary outcome was 24 h awake ambulatory blood pressure (systolic and diastolic) change from baseline to 16-weeks on an intention-to-treat basis. Clinicaltrials.gov registered on March 30, 2016 (NCT02723552). Findings: Enrolment occurred between 30/06/2016-26/10/2018. Amongst the 203 randomized young adults (n = 102 in the intervention group; n = 101 in the control group), 178 (88%; n = 76 intervention group, n = 84 control group) completed 16-week follow-up and 160 (79%; n = 68 intervention group, n = 69 control group) completed 52-weeks follow-up. There were no group differences in awake systolic (0·0 mmHg [95%CI, -2·9 to 2·8]; P = 0·98) or awake diastolic ambulatory blood pressure (0·6 mmHg [95%CI, -1·4. to 2·6]; P = 0·58). Aerobic training increased peak oxygen uptake (2·8 ml/kg/min [95%CI, 1·6 to 4·0]) and peak wattage (14·2watts [95%CI, 7·6 to 20·9]) at 16-weeks. There were no intervention effects at 52-weeks follow-up. Intepretation: These results do not support the exclusive use of moderate to high intensity aerobic exercise training for blood pressure control in young adults. Funding: Wellcome Trust, British Heart Foundation, National Institute for Health Research, Oxford Biomedical Research Centre.
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- 2022
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137. The 5 A’s of firearm safety counseling: Validating a clinical counseling methodology for firearms in a simulation-based randomized controlled trial
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Katherine Hoops, Alexander McCourt, and Cassandra K. Crifasi
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Firearm ,Violence prevention ,Injury prevention ,Medical education ,Simulation ,Medicine - Abstract
The 5 A’s of Firearm Safety Counseling is a novel framework by which clinicians can approach firearm injury prevention counseling. To evaluate this methodology as a tool for clinicians, a single-center, simulation-based randomized controlled trial was performed with clinical trainees in psychiatry, medicine, and pediatrics in an urban quaternary care center. Participants received didactic education on firearm injury epidemiology and evidence-based policies and training on a specific counseling framework, the 5 A’s of Firearm Safety Counseling which they then implemented in a simulation setting with standardized patients. Of the 29 participants who were randomized, 28 completed the trial. Most participants were psychiatry trainees (residents or subspecialty fellows). While over 60% of participants were uncomfortable or extremely uncomfortable counseling on firearm injury prior to the interventions, only 4% reported being uncomfortable after receiving education and participating in simulated encounters. There was no significant difference between the quality and content of the counseling provided before and after the didactic-only session. There was a significant difference between the quality and content of the counseling provided before and after the specific training on the 5 A’s for Firearm Safety Counseling strategy. The 5 A’s for Firearm Safety Counseling is a promising educational tool to improve quality, content, and comfort delivering patient-centered counseling on firearm injury prevention in a simulation-based setting. These findings suggest that further validation in a clinical setting is warranted given there is an urgent need for feasible and effective firearm injury prevention strategies among clinicians.
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- 2022
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138. Estimates of the coverage of parameter space by Latin Hypercube and Orthogonal sampling: connections between Populations of Models and Experimental Designs
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Donovan, Diane, Burrage, Kevin, Burrage, Pamela, McCourt, Thomas A, Thompson, Harold Bevan, and Yazici, Emine Sule
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Mathematics - Statistics Theory ,62K25 - Abstract
In this paper we use counting arguments to prove that the expected percentage coverage of a $d$ dimensional parameter space of size $n$ when performing $k$ trials with either Latin Hypercube sampling or Orthogonal sampling (when $n=p^d$) is the same. We then extend these results to an experimental design setting by projecting onto a 2 dimensional subspace. In this case the coverage is equivalent to the Orthogonal sampling setting when the dimension of the parameter space is two. These results are confirmed by simulations. The ideas presented here have particular relevance when attempting to perform uncertainty quantification or when building populations of models., Comment: 15 pages, 2 figures. arXiv admin note: text overlap with arXiv:1502.06559
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- 2015
139. A new inclination instability reshapes Keplerian disks into cones: application to the outer Solar System
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Madigan, Ann-Marie and McCourt, Michael
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Astrophysics - Earth and Planetary Astrophysics ,Astrophysics - Astrophysics of Galaxies - Abstract
Disks of bodies orbiting a much more massive central object are extremely common in astrophysics. When the orbits comprising such disks are eccentric, we show they are susceptible to a new dynamical instability. Gravitational forces between bodies in the disk drive exponential growth of their orbital inclinations and clustering in their angles of pericenter, expanding an initially thin disk into a conical shape by giving each orbit an identical 'tilt' with respect to the disk plane. This new instability dynamically produces the unusual distribution of orbits observed for minor planets beyond Neptune, suggesting that the instability has shaped the outer Solar System. It also implies a large initial disk mass (1-10 Earth masses) of scattered bodies at hundreds of AU; we predict increasing numbers of detections of minor planets clustered in their angles of pericenter with high inclinations., Comment: 6 pages, 4 figures, submitted to MNRAS Letters
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- 2015
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140. Unbound Debris Streams and Remnants Resulting From the Tidal Disruptions of Stars by Supermassive Black Holes
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Guillochon, James, McCourt, Michael, Chen, Xian, Johnson, Michael D., and Berger, Edo
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Astrophysics - High Energy Astrophysical Phenomena ,Astrophysics - Solar and Stellar Astrophysics - Abstract
The kinetic energy of a star in orbit about a supermassive black hole is a significant fraction of its rest mass energy when its periapse is comparable to its tidal radius. Upon its destruction, a fraction of this energy is extracted and injected into the stellar debris, half of which becomes unbound from the black hole, with the fastest material moving at $\sim 0.03 c$. In this paper, we present a formalism for determining the fate of these unbound debris streams (UDSs) as they depart from the black hole and interact with the surrounding gas. As the density and velocity varies along the length of a UDS, we find that hydrodynamical drag quickly shapes UDSs into loop-like structures, with the densest portions of the streams leading portions of lower density. As UDSs travel outwards, their drag against the ISM increases quadratically with distance, which causes UDSs to deposit their momentum and energy into the ambient medium before the surrounding shocked ISM has a chance to cool. This sudden injection of $\sim 10^{50}$ erg into the ambient medium generates a Sedov-like unbound debris remnant (UDR) that mimics supernova remnants (SNRs) in energetics and appearance, accelerates particles which will produce cosmic rays and synchrotron emission, and provides momentum feedback into the molecular clouds surrounding a black hole. We estimate that a few of these UDRs might be present within a couple degrees of the Galactic Center masquerading as SNRs, and that the UDR scenario is a plausible explanation for Sgr A East., Comment: 16 pages, 9 figures. Submitted to ApJ
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- 2015
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141. A Validated Nonlinear Kelvin-Helmholtz Benchmark for Numerical Hydrodynamics
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Lecoanet, Daniel, McCourt, Michael, Quataert, Eliot, Burns, Keaton J., Vasil, Geoffrey M., Oishi, Jeffrey S., Brown, Benjamin P., Stone, James M., and O'Leary, Ryan M.
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Astrophysics - Instrumentation and Methods for Astrophysics ,Physics - Fluid Dynamics - Abstract
The nonlinear evolution of the Kelvin-Helmholtz instability is a popular test for code verification. To date, most Kelvin-Helmholtz problems discussed in the literature are ill-posed: they do not converge to any single solution with increasing resolution. This precludes comparisons among different codes and severely limits the utility of the Kelvin-Helmholtz instability as a test problem. The lack of a reference solution has led various authors to assert the accuracy of their simulations based on ad-hoc proxies, e.g., the existence of small-scale structures. This paper proposes well-posed Kelvin-Helmholtz problems with smooth initial conditions and explicit diffusion. We show that in many cases numerical errors/noise can seed spurious small-scale structure in Kelvin-Helmholtz problems. We demonstrate convergence to a reference solution using both Athena, a Godunov code, and Dedalus, a pseudo-spectral code. Problems with constant initial density throughout the domain are relatively straightforward for both codes. However, problems with an initial density jump (which are the norm in astrophysical systems) exhibit rich behavior and are more computationally challenging. In the latter case, Athena simulations are prone to an instability of the inner rolled-up vortex; this instability is seeded by grid-scale errors introduced by the algorithm, and disappears as resolution increases. Both Athena and Dedalus exhibit late-time chaos. Inviscid simulations are riddled with extremely vigorous secondary instabilities which induce more mixing than simulations with explicit diffusion. Our results highlight the importance of running well-posed test problems with demonstrated convergence to a reference solution. To facilitate future comparisons, we include the resolved, converged solutions to the Kelvin-Helmholtz problems in this paper in machine-readable form., Comment: Reference solution snapshots can be found at https://doi.org/10.5281/zenodo.5803759
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- 2015
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142. Going with the flow: using gas clouds to probe the accretion flow feeding Sgr A*
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McCourt, Michael and Madigan, Ann-Marie
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Astrophysics - High Energy Astrophysical Phenomena - Abstract
The massive black hole in our galactic center, Sgr A*, accretes only a small fraction of the gas available at its Bondi radius. The physical processes determining this accretion rate remain unknown, partly due to a lack of observational constraints on the gas at distances between ~10 and ~10$^5$ Schwarzschild radii (Rs) from the black hole. Recent infrared observations identify low-mass gas clouds, G1 and G2, moving on highly eccentric, nearly co-planar orbits through the accretion flow around Sgr A*. Although it is not yet clear whether these objects contain embedded stars, their extended gaseous envelopes evolve independently as gas clouds. In this paper we attempt to use these gas clouds to constrain the properties of the accretion flow at ~10$^3$ Rs. Assuming that G1 and G2 follow the same trajectory, we model the small differences in their orbital parameters as evolution resulting from interaction with the background flow. We find evolution consistent with the G-clouds originating in the clockwise disk. Our analysis enables the first unique determination of the rotation axis of the accretion flow: we localize the rotation axis to within 20 degrees, finding an orientation consistent with the parsec-scale jet identified in x-ray observations and with the circumnuclear disk, a massive torus of molecular gas ~1.5 pc from Sgr A*. This suggests that the gas in the accretion flow comes predominantly from the circumnuclear disk, rather than the winds of stars in the young clockwise disk. This result will be tested by the Event Horizon Telescope within the next year. Our model also makes testable predictions for the orbital evolution of G1 and G2, falsifiable on a 5-10 year timescale., Comment: 14 pages, 10 figures; submitted to MNRAS
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- 2015
143. Correction to: Impact of Policy Interventions on Oxycodone Prescribing in Queensland, Australia: An Uncontrolled Interrupted Time Series Study
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Tumusiime, William, Hardman, Caitlin, and McCourt, Elizabeth
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- 2022
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144. Bayesian optimization with approximate set kernels
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Kim, Jungtaek, McCourt, Michael, You, Tackgeun, Kim, Saehoon, and Choi, Seungjin
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- 2021
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145. Impact of COVID-19 on UK stress echocardiography practice: insights from the EVAREST sites
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Dockerill, Cameron, Woodward, William, McCourt, Annabelle, Monteiro, Cristiana, Benedetto, Elena, Paton, Maria, Oxborough, David, Robinson, Shaun, Pearce, Keith, Monaghan, Mark J., Augustine, Daniel X., and Leeson, Paul
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- 2021
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146. Photonic-chip assisted correlative light and electron microscopy
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Jean-Claude Tinguely, Anna Maria Steyer, Cristina Ionica Øie, Øystein Ivar Helle, Firehun Tsige Dullo, Randi Olsen, Peter McCourt, Yannick Schwab, and Balpreet Singh Ahluwalia
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Biology (General) ,QH301-705.5 - Abstract
Tinguely et al. develop a photonic chip-based correlative light-electron microscopy system to generate co-registered multi-modal total internal reflection fluorescence microscopy (TIRF) and electron microscopy (EM) images of biological samples at nanometer scale.
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- 2020
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147. Adaptation of the PERCEPT myeloma prehabilitation trial to virtual delivery: changes in response to the COVID-19 pandemic
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Gita Ramdharry, Orla McCourt, Abigail Fisher, Anna L Roberts, Joanne Land, Neil Rabin, Kwee Yong, and Katie Rowe
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Medicine - Abstract
Introduction and objective Research activity was impacted by the novel COVID-19 pandemic, the PERCEPT myeloma trial was no exception. This pilot randomised trial delivered a face-to-face exercise intervention prior to and during autologous stem cell transplantation (ASCT) in myeloma patients, as a consequence of COVID-19 it required significant adaptions to continue. This brief communication describes how the previously published study protocol was adapted for virtual delivery. In addition, we highlight the challenge of continuing the study which was embedded within a clinical pathway also impacted by the pandemic.Summary The original trial protocol was amended and continued to recruit and deliver an exercise prehabilitation intervention virtually. Continued delivery of the intervention was deemed important to participants already enrolled within the trial and the adapted virtual version of the trial was acceptable to the research ethics committee as well as participants. Development of effective, remotely delivered rehabilitation and physical activity programmes are likely to benefit people living with myeloma. The COVID-19 pandemic provided an opportunity to explore the feasibility of a virtual programme for ASCT recipients, however, continued changes to the clinical pathway within which the study was embedded posed the greatest challenge and ultimately led to early termination of recruitment.Trial registration number ISRCTN15875290; pre-results
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- 2022
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148. A feasibility study evaluating the uptake, effectiveness and acceptability of routine screening of pregnant migrants for latent tuberculosis infection in antenatal care: a research protocol
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Ibrahim Abubakar, Chris Griffiths, Andrew Copas, Shakila Thangaratinam, A Rahman, Heinke Kunst, Christine McCourt, D Zenner, and Peter J White
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Medicine - Abstract
Introduction Globally, tuberculosis (TB) is a leading cause of death in women of reproductive age and there is high risk of reactivation of latent tuberculosis infection (LTBI) in pregnancy. The uptake of routine screening of migrants for LTBI in the UK in primary care is low. Antenatal care is a novel setting which could improve uptake and can lend insight into the feasibility and acceptability of offering opt-out screening for LTBI.Methods and analysis This is an observational feasibility study with a nested qualitative component. The setting will be the antenatal clinics in three hospitals in East London, UK . Inclusion criteria are pregnant migrant women aged 16–35 years attending antenatal clinics who are from countries with a TB incidence of greater than 150/100 000 including sub-Saharan Africa, and who have been in the UK for less than 5 years. Participants will be offered LTBI screening with an opt-out interferon gamma release assay blood test, and be invited to complete a questionnaire. Both participants and healthcare providers will be invited to participate in semistructured interviews or focus groups to evaluate understanding, feasibility and acceptability of routine opt-out LTBI screening. The primary analysis will focus on estimating the uptake of the screening programme along with the corresponding 95% CI. Secondary analysis will focus on estimating the test positivity. Qualitative analysis will evaluate the acceptability of offering routine opt-out LTBI screening to participants and healthcare providers.Ethics and dissemination The study has received the following approvals: Health Research Authority (IRAS 247388) and National Health Service Ethics Committee (19/LO/0557). The results will be made available locally to antenatal clinics and primary care physicians, nationally to NHS England and Public Health England and internationally through conferences and journals.Trial registration number NCT04098341.
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- 2022
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149. Translational randomized phase II trial of cabozantinib in combination with nivolumab in advanced, recurrent, or metastatic endometrial cancer
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John Wright, Stephanie Lheureux, Ilaria Colombo, Ramy Gadalla, Pamela S Ohashi, Xuan Li, Lisa Wang, Matthew S Block, David G Brooks, Andrea Jewell, Carolyn McCourt, Eugenia Girda, Sarah Temkin, Gini F Fleming, Linda Duska, Daniela E Matei, Panagiotis A Konstantinopoulos, Ben X Wang, Stephanie L Gaillard, Michael McHale, Floor J Backes, Theresa L Werner, Siobhan Kehoe, Rachel Wildman, Shirin Soleimani, Scott Lien, and Trevor Pugh
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Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Background Combining immunotherapy and antiangiogenic agents is a promising treatment strategy in endometrial cancer. To date, no biomarkers for response have been identified and data on post-immunotherapy progression are lacking. We explored the combination of a checkpoint inhibitor (nivolumab) and an antiangiogenic agent (cabozantinib) in immunotherapy-naïve endometrial cancer and in patients whose disease progressed on previous immunotherapy with baseline biopsy for immune profiling.Patients and methods In this phase II trial (ClinicalTrials.gov NCT03367741, registered December 11, 2017), women with recurrent endometrial cancer were randomized 2:1 to nivolumab with cabozantinib (Arm A) or nivolumab alone (Arm B). The primary endpoint was Response Evaluation Criteria in Solid Tumors-defined progression-free survival (PFS). Patients with carcinosarcoma or prior immune checkpoint inhibitor received combination treatment (Arm C). Baseline biopsy and serial peripheral blood mononuclear cell (PBMC) samples were analyzed and associations between patient outcome and immune data from cytometry by time of flight (CyTOF) and PBMCs were explored.Results Median PFS was 5.3 (90% CI 3.5 to 9.2) months in Arm A (n=36) and 1.9 (90% CI 1.6 to 3.4) months in Arm B (n=18) (HR=0.59, 90% CI 0.35 to 0.98; log-rank p=0.09, meeting the prespecified statistical significance criteria). The most common treatment-related adverse events in Arm A were diarrhea (50%) and elevated liver enzymes (aspartate aminotransferase 47%, alanine aminotransferase 42%). In-depth baseline CyTOF analysis across treatment arms (n=40) identified 35 immune-cell subsets. Among immunotherapy-pretreated patients in Arm C, non-progressors had significantly higher proportions of activated tissue-resident (CD103+CD69+) ɣδ T cells than progressors (adjusted p=0.009).Conclusions Adding cabozantinib to nivolumab significantly improved outcomes in heavily pretreated endometrial cancer. A subgroup of immunotherapy-pretreated patients identified by baseline immune profile and potentially benefiting from combination with antiangiogenics requires further investigation.
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- 2022
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150. 50 years of Arabidopsis research: highlights and future directions
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Provart, Nicholas J, Alonso, Jose, Assmann, Sarah M, Bergmann, Dominique, Brady, Siobhan M, Brkljacic, Jelena, Browse, John, Chapple, Clint, Colot, Vincent, Cutler, Sean, Dangl, Jeff, Ehrhardt, David, Friesner, Joanna D, Frommer, Wolf B, Grotewold, Erich, Meyerowitz, Elliot, Nemhauser, Jennifer, Nordborg, Magnus, Pikaard, Craig, Shanklin, John, Somerville, Chris, Stitt, Mark, Torii, Keiko U, Waese, Jamie, Wagner, Doris, and McCourt, Peter
- Subjects
Biological Sciences ,Genetics ,Arabidopsis ,Epigenesis ,Genetic ,Plant Immunity ,Research ,Reverse Genetics ,Signal Transduction ,development ,epigenetics ,genome ,model system ,reverse genetics ,signaling ,synthetic biology ,Agricultural and Veterinary Sciences ,Plant Biology & Botany ,Plant biology ,Climate change impacts and adaptation ,Ecological applications - Abstract
922 I. 922 II. 922 III. 925 IV. 925 V. 926 VI. 927 VII. 928 VIII. 929 IX. 930 X. 931 XI. 932 XII. 933 XIII. Natural variation and genome-wide association studies 934 XIV. 934 XV. 935 XVI. 936 XVII. 937 937 References 937 SUMMARY: The year 2014 marked the 25(th) International Conference on Arabidopsis Research. In the 50 yr since the first International Conference on Arabidopsis Research, held in 1965 in Göttingen, Germany, > 54 000 papers that mention Arabidopsis thaliana in the title, abstract or keywords have been published. We present herein a citational network analysis of these papers, and touch on some of the important discoveries in plant biology that have been made in this powerful model system, and highlight how these discoveries have then had an impact in crop species. We also look to the future, highlighting some outstanding questions that can be readily addressed in Arabidopsis. Topics that are discussed include Arabidopsis reverse genetic resources, stock centers, databases and online tools, cell biology, development, hormones, plant immunity, signaling in response to abiotic stress, transporters, biosynthesis of cells walls and macromolecules such as starch and lipids, epigenetics and epigenomics, genome-wide association studies and natural variation, gene regulatory networks, modeling and systems biology, and synthetic biology.
- Published
- 2016
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