296 results on '"Quadrifoglio, F"'
Search Results
102. Comparative study of the enthalpy of ionization of polycarboxylic acids in aqueous solution
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Crescenzi, V., primary, Delben, F., additional, Quadrifoglio, F., additional, and Dolar, D., additional
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- 1973
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103. Calorimetric investigation of poly(methacrylic acid) and poly(acrylic acid) in aqueous solution
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Crescenzi, V., primary, Quadrifoglio, F., additional, and Delben, F., additional
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- 1972
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104. Potentiometric and Microcalorimetric Determination of the Termodynamic Parameters of the Order-Disorder Transition of Poly(L-histidine) in Aqueous Solution
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Terbojevich, M., primary, Cosani, A., additional, Peggion, E., additional, Quadrifoglio, F., additional, and Crescenzi, V., additional
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- 1972
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105. Ultraviolet rotatory properties of polypeptides in solution. II. Poly-L-serine
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Quadrifoglio, F., primary and Urry, D. W., additional
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- 1968
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106. The interaction of methyl orange and other azo-dyes with polyelectrolytes and with colloidal electrolytes in dilute aqueous solution
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Quadrifoglio, F, primary and Crescenzi, V, additional
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- 1971
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107. On the binding of ethidium bromide in synthetic polyelectrolyte solutions
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Crescenzi, V., primary and Quadrifoglio, F., additional
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- 1974
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108. Helix sense of poly-.beta.-benzyl-L-aspartate
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Giancotti, V., primary, Quadrifoglio, F., additional, and Crescenzi, V., additional
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- 1972
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109. Influence of stereoregularity on binding of counterions by poly(methacrylic acid)
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Costantino, L., primary, Crescenzi, V., additional, Quadrifoglio, F., additional, and Vitagliano, V., additional
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- 1967
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110. On the Selective Interaction of Monovalent Counterions with Polycarboxylates in Water
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Quadrifoglio, F., primary, Crescenzi, V., additional, and Delben, F., additional
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- 1973
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111. Conformational transition of poly(L‐glutamic acid) in aqueous solution
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Barone, G., primary, Crescenzi, V., additional, and Quadrifoglio, F., additional
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- 1966
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112. On the enthalpy of dissociation of poly(methacrylic acid) in aqueous solution
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Delben, F., primary, Crescenzi, V., additional, and Quadrifoglio, F., additional
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- 1972
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113. ChemInform Abstract: GESCHWINDIGKEIT DER ELEKTRONENUEBERTRAGUNG ZWISCHEN KOBALTKOMPLEXIONEN IN WAESSRIGEN POLYELEKTROLYTLOESUNGEN
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BRUECKNER, S., primary, CRESCENZI, V., additional, and QUADRIFOGLIO, F., additional
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- 1970
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114. Separation and properties of an H2B histone variant from the sperm chromatin of the sea urchin Sphaerechinus granularis
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Giancotti, V., Quadrifoglio, F., Lancieri, M., and Geraci, G.
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- 1980
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115. 67 DETECTION OF SIX SYNTHETIC PEPTIDES DERIVED FROM ALFAGLIADIN BY ANTIGLIADIN ANTIBODIES AGA OF POOLED COELIAC SERA
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Not, T., Monte, R., Cauci, S., Presani, G., Perticarari, S., Ventura, S., and Quadrifoglio, F.
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- 1993
116. Short oligodeoxynucleotides with d(G-C)n sequence do not assume left-handed conformation in high salt conditions*1
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QUADRIFOGLIO, F
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- 1984
117. Mechanism of reaction of two antitumor octahedral complexes (cis and trans-RuCl (DMSO) 4) with DNA
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Cauci, S. and Quadrifoglio, F.
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- 1989
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118. Interactions of RuCl 2(dimethylsulfoxide) 4 complexes with DNA and related molecules
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Cauci, S., Quadrifoglio, F., Yu, Y., Marzilli, L., Mestroni, G., and Alessio, E.
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- 1989
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119. Sequence specificity in the interaction of daunomycin with alternating polydeoxynucleotides
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Xodo, L.E., Manzini, G., Ruggiero, J., and Quadrifoglio, F.
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- 1988
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120. Cross-regulation between Egr-1 and APE/Ref-1 during early response to oxidative stress in the human osteoblastic HOBIT cell line: Evidence for an autoregulatory loop
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Alex Pines, Gianluca Tell, Mark R. Kelley, Milena Romanello, Eileen D. Adamson, Luigi Moro, Nicoletta Bivi, Franco Quadrifoglio, Paola D'Andrea, Giuseppe Damante, Pines, A, Bivi, N, Romanello, M, Damante, G, Kelley, Mr, Adamson, Ed, D'Andrea, Paola, Quadrifoglio, F, Moro, L, and Tell, G.
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Egr-1 ,DNA Repair ,Transcription, Genetic ,Electrophoretic Mobility Shift Assay ,Biochemistry ,APE/REF1 ,PKC ,transcriptional regulation ,redox regulation ,DNA-(Apurinic or Apyrimidinic Site) Lyase ,Transcriptional regulation ,Promoter Regions, Genetic ,Regulation of gene expression ,DNA-repair ,Zinc Fingers ,General Medicine ,Transfection ,Oxidants ,DNA-Binding Proteins ,APE/Ref-1 ,Oxidation-Reduction ,Chromatin Immunoprecipitation ,Molecular Sequence Data ,Biology ,Thymidine Kinase ,Immediate early protein ,Cell Line ,Immediate-Early Proteins ,Humans ,Transcription factor ,Cell Proliferation ,Early Growth Response Protein 1 ,Binding Sites ,Osteoblasts ,Base Sequence ,Cell growth ,Tumor Suppressor Proteins ,PTEN Phosphohydrolase ,Promoter ,Redox regulation ,DNA ,Hydrogen Peroxide ,Molecular biology ,Phosphoric Monoester Hydrolases ,body regions ,Oxidative Stress ,Gene Expression Regulation ,Chromatin immunoprecipitation ,Transcription Factors - Abstract
The Early Growth Response protein (Egr-1) is a C(2)H(2)-zinc finger-containing transcriptional regulator involved in the control of cell proliferation and apoptosis. Its DNA-binding activity is redox regulated in vitro through the oxidation-reduction of Cys residues within its DNA-binding domain. APE/Ref-1 is a DNA-repair enzyme with redox modulating activities on several transcription factors. In this study, by evaluating the effects of different stimuli, we found a similar timing of activation being suggestive for a common and co-linear regulation for the two proteins. Indeed, we show that APE/Ref-1 increases the Egr-1 DNA-binding activity in unstimulated osteoblastic HOBIT cells. H(2)O(2) stimulation induces a strong interaction between Egr-1 and APE/Ref-1 at early times upon activation, as assayed by immunoprecipitation experiments. By using a cell transfection approach, we demonstrated the functional role of this interaction showing that two specific Egr-1 target genes, the PTEN phosphatase and the thymidine kinase (TK) genes promoters, are activated by contransfection of APE/Ref-1. Interestingly, by using a cell transfection approach and Chromatin immunoprecipitation assays, we were able to demonstrate that Egr-1 stimulates the transcriptional activity of APE/Ref-1 gene promoter by a direct interaction with specific DNA-binding site on its promoter. Taken together, our data delineate a new molecular mechanism of Egr-1 activation occurring soon after H(2)O(2) stimulation in osteoblastic cells and suggest a model for a positive loop between APE/Ref-1 and Egr-1 that could explain the early transcriptional activation of APE/Ref-1 gene expression.
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- 2005
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121. Interrelationships of interleukin-8 with interleukin-1beta and neutrophils in vaginal fluid of healthy and bacterial vaginosis positive women
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Franco Quadrifoglio, Sabina Cauci, Secondo Guaschino, Davide De Santo, Paola Penacchioni, Domenico De Aloysio, Silvia Driussi, Cauci, S, Guaschino, Secondo, DE ALOYSIO, D, Driussi, S, DE SANTO, D, Penacchioni, P, and Quadrifoglio, F.
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Embryology ,Cellular immunity ,Neutrophils ,Neutrophile ,medicine.medical_treatment ,Physiology ,Biology ,Leukocyte Count ,Vaginal disease ,Reference Values ,Genetics ,medicine ,Humans ,Interleukin 8 ,Molecular Biology ,Interleukin-8 ,Obstetrics and Gynecology ,Interleukin ,Vaginosis, Bacterial ,Cell Biology ,medicine.disease ,Cytokine ,medicine.anatomical_structure ,Reproductive Medicine ,Vagina ,Immunology ,Female ,Bacterial vaginosis ,Interleukin-1 ,Developmental Biology - Abstract
Vaginal innate immunity in response to microbial perturbation is still poorly understood and could be crucial for protection from adverse outcomes. We investigated the relationship between interleukin (IL)-8, IL-1beta and neutrophils in vaginal fluid obtained from 60 healthy women and 51 women who were bacterial vaginosis (BV) positive. Concentrations of IL-8 and IL-1beta were highly correlated with counts of neutrophils in vaginal fluid of the entire population examined (111 subjects). Vaginal IL-1beta concentrations were significantly higher (P0.001) in BV positive women. There was no significant difference in IL-8 levels or number of neutrophils between healthy controls and BV positive women. None of the healthy controls with high neutrophil counts (or =75th percentile, 14 average count per field) had high concentrations of IL-1beta (or =75th percentile, 220 pg/ml), whereas 84% of BV positive women with high neutrophil counts had high IL-1beta concentrations (P0.001). On the contrary, no difference in the percentage of subjects with elevated concentrations of IL-8 (or =75th percentile, 2842 pg/ml) was found between healthy and BV positive women with high numbers of neutrophils (55.5% of healthy versus 53% of BV positive women). Our findings show that BV causes a large increase in IL-1beta concentrations which is not paralleled by an increase in IL-8 concentrations in vaginal fluid, suggesting that BV-associated factors more specifically dampen IL-8 rather than IL-1beta. The lack of an increase in IL-8 may explain the absence of an increase in neutrophil numbers in most women exposed to abnormal vaginal colonization (BV).
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- 2003
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122. Determination of Immunoglobulin A against Gardnerella vaginalis Hemolysin, Sialidase, and Prolidase Activities in Vaginal Fluid: Implications for Adverse Pregnancy Outcomes
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Poul Thorsen, Sabina Cauci, Secondo Guaschino, Annie Bremmelgaard, Diana Schendel, Franco Quadrifoglio, Cauci, S, Thorsen, P, Schendel, De, Bremmelgaard, A, Quadrifoglio, F, and Guaschino, Secondo
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Adult ,Microbiology (medical) ,Immunoglobulin A ,Dipeptidases ,Neuraminidase ,Biology ,medicine.disease_cause ,Sialidase ,Hemolysin Proteins ,Vaginal disease ,Pregnancy ,medicine ,Humans ,Gardnerella vaginalis ,Antigens, Bacterial ,Pregnancy Outcome ,Bacteriology ,Vaginosis, Bacterial ,medicine.disease ,Pregnancy Complications ,Low birth weight ,Immunology ,biology.protein ,Gestation ,Female ,Bacterial vaginosis ,medicine.symptom - Abstract
A nested case-control study of low birth weight and preterm delivery was performed with singleton women. Immunoglobulin A (IgA) against the Gardnerella vaginalis hemolysin (anti-Gvh IgA) and sialidase and prolidase activities were determined in vaginal fluid at 17 weeks of gestation. Sialidase positivity and bacterial vaginosis with high prolidase activity were associated with 2- and 11-fold increased risks for low birth weight, respectively. No woman with bacterial vaginosis plus a strong anti-Gvh IgA response had an adverse outcome.
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- 2003
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123. Correlation of Local Interleukin‐8 with Immunoglobulin A againstGardnerella vaginalisHemolysin and with Prolidase and Sialidase Levels in Women with Bacterial Vaginosis
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Secondo Guaschino, Davide De Santo, Paolo Lanzafame, Sabina Cauci, Silvia Driussi, Franco Quadrifoglio, Cauci, S, Guaschino, Secondo, Driussi, S, DE SANTO, D, Lanzafame, P, and Quadrifoglio, F.
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Adult ,Immunoglobulin A ,Dipeptidases ,Neuraminidase ,Sialidase ,medicine.disease_cause ,Microbiology ,Hemolysin Proteins ,Leukocyte Count ,Immune system ,medicine ,Humans ,Immunology and Allergy ,Gardnerella vaginalis ,Vaginitis ,biology ,Interleukin-8 ,Interleukin ,Bacterial Infections ,Vaginosis, Bacterial ,Middle Aged ,medicine.disease ,Infectious Diseases ,medicine.anatomical_structure ,Vagina ,Immunology ,biology.protein ,Female ,Bacterial vaginosis - Abstract
Mucosal immune system activation may represent a critical determinant of adverse consequences associated with bacterial vaginosis (BV), such as sexual human immunodeficiency virus transmission, upper genital tract infections, postsurgical infections, and adverse pregnancy outcomes. Concentrations of sialidase, prolidase, and anti-Gardnerella vaginalis hemolysin (Gvh) immunoglobulin A (IgA) were higher in vaginal fluids of 75 fertile women with BV, compared with concentrations in vaginal fluids of 85 healthy control subjects. Interleukin (IL)-8 levels were positively associated with anti-Gvh IgA response and inversely correlated with high levels of prolidase and sialidase in women with BV. IL-8 concentration was strongly associated with leukocyte count in both healthy and BV-positive women. The absence of leukocytes in most women with BV likely is due to lack of IL-8 induction. Parallel impairment of innate and adaptive mucosal immune factors, likely through microbial hydrolytic effects, may allow for the ascent of microorganisms to the upper genital tract and may facilitate viral infections.
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- 2002
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124. High concentrations of inhibin A and inhibin B in ovarian serous cystadenoma: relationship with oestradiol and nitric oxide metabolites
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Jehoshua Dor, Fernando M. Reis, Giuseppe Bifulco, A. Faletti, Stefano Luisi, Sabina Cauci, Felice Petraglia, Franco Quadrifoglio, Reis, Fm, Faletti, A, Luisi, S, Bifulco, Giuseppe, Cauci, S, Quadrifoglio, F, Dor, J, and Petraglia, F.
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endocrine system ,Embryology ,medicine.medical_specialty ,endocrine system diseases ,medicine.drug_class ,Ovary ,Biology ,Nitric Oxide ,Nitric oxide ,chemistry.chemical_compound ,Internal medicine ,nitric ,Genetics ,medicine ,inhibin ,Humans ,Inhibins ,Cyst ,Molecular Biology ,Nitrites ,reproductive and urinary physiology ,Ovarian Neoplasms ,Nitrates ,Estradiol ,Ovarian serous cystadenoma ,Cystadenoma, Serous ,Prostatic Secretory Proteins ,Obstetrics and Gynecology ,Cell Biology ,medicine.disease ,Serous Cystadenoma ,Follicular fluid ,female genital diseases and pregnancy complications ,oxide/estrogen ,Endocrinology ,medicine.anatomical_structure ,Reproductive Medicine ,chemistry ,Estrogen ,Cystadenoma ,ovary ,Female ,hormones, hormone substitutes, and hormone antagonists ,Developmental Biology - Abstract
Inhibin production has been demonstrated in malignant epithelial ovarian tumours, but secretion of inhibins by benign cystadenoma has not yet been reported. The present study evaluated the concentrations of inhibin A and inhibin B and the relationship with oestradiol and nitric oxide metabolites in fluid collected from benign ovarian serous cystadenomas (n = 15). In addition, follicular fluid samples (n = 14) from women with regular ovulatory cycles undergoing ovarian stimulation for IVF were studied as a reference group. High concentrations of inhibin A (median = 89.3 ng/ml) and inhibin B (median = 116.1 ng/ml) were found in the cystic fluid of ovarian serous cystadenomas. These inhibin concentrations were even higher than in follicular fluid of stimulated follicles (inhibins A and B = 41.2 and 46.8 ng/ml respectively; P: < 0.001), whereas oestradiol was approximately 18-fold lower in cystic fluid than in follicular fluid (median = 34 versus 622 pg/ml, P: < 0.001). In ovarian cysts, the concentrations of inhibin A and oestradiol were inversely correlated (r = -0.678, P: = 0.008). Cystic fluid samples containing the highest concentrations of NO(2)(-)/NO(3)(-) (45-60 micromol/l) had lower inhibin A and higher oestradiol concentrations than those samples containing lower concentrations (10-25 micromol/l) of NO(2)(-)/NO(3)(-). It is concluded that high amounts of dimeric inhibins are present in ovarian serous cystadenoma. The source of inhibins and the determinants of the inverse association of inhibin A with oestradiol and nitric oxide remain to be determined.
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- 2000
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125. Effect of phosphorothioate modifications on the ability of GTn oligodeoxynucleotides to specifically recognize single-stranded DNA-binding proteins and to affect human cancer cellular growth
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Barbara Dapas, Franco Quadrifoglio, Luigi E. Xodo, Bruna Scaggiante, Gianluca Tell, Carla Morassutti, Morassutti, C., Scaggiante, Bruna, Dapas, Barbara, Xodo, L., Tell, G., and Quadrifoglio, F.
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Cytotoxicity ,DNA, Single-Stranded ,Human T-lymphoblasts ,Biochemistry ,DNA-binding protein ,Nuclear proteins ,Tumor Cells, Cultured ,Humans ,Leukemia-Lymphoma, Adult T-Cell ,Cytotoxic T cell ,Nuclear protein ,Phosphorothioate Oligonucleotides ,Base Sequence ,Oligonucleotide ,Cell growth ,Chemistry ,DNA, Neoplasm ,General Medicine ,Thionucleotides ,Phosphorothioate oligonucleotides ,Neoplasm Proteins ,DNA-Binding Proteins ,Oligodeoxyribonucleotides ,Cell culture ,Phosphodiester bond ,Cell Division - Abstract
We have previously identified phosphodiester oligonucleotides exclusively made of G and T bases, named GTn, that significantly inhibit human cancer cell growth and recognize specific nuclear single-stranded DNA binding proteins. We wished to examine the ability of the modified GTn oligonucleotides with different degrees of phosphorothioate modifications to bind specifically to the same nuclear proteins recognized by the GTn phosphodiester analogues and their cytotoxic effect on the human T-lymphoblastic CCRF-CEM cell line. We showed that the full phosphorothioate GTn oligonucleotide was neither able to specifically recognize those nuclear proteins, nor cytotoxic. In contrast, the 3'-phosphorothioate-protected GTn oligonucleotides can maintain the specific protein-binding activity. The end-modified phosphorothioate oligonucleotides were also able to elicit the dose-dependent cell growth inhibition effect, but a loss in the cytotoxic ability was observed increasing the extent of sulphur modification of the sequences. Our results indicate that phosphorothioate oligonucleotides directed at specific single-stranded DNA-binding proteins should contain a number of phosphorothioate end-linkages which should be related to the length of the sequence, in order to maintain the same biological activities exerted by their phosphodiester analogues.
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- 1999
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126. Nucleolar accumulation of APE1 depends on charged Lysine residues that undergo acetylation upon genotoxic stress and modulate its BER activity in cells
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Franco Quadrifoglio, Daniela Marasco, Gianluca Tell, Carlo Vascotto, Mattia Poletto, Kishor K. Bhakat, Lisa Lirussi, Giulia Antoniali, Andrea Scaloni, Chiara D'Ambrosio, Marilisa Leone, Milena Romanello, Lirussi, L, Antoniali, G, Vascotto, C, D'Ambrosio, C, Poletto, M, Romanello, M, Marasco, Daniela, Leone, M, Quadrifoglio, F, Bhakat, Kk, Scaloni, A, and Tell, G.
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DNA Repair ,Protein Conformation ,DNA damage ,DNA repair ,Lysine ,Genotoxic Stress ,Biology ,Structure-Activity Relationship ,03 medical and health sciences ,0302 clinical medicine ,Sirtuin 1 ,Genotoxic stress ,Enzyme Stability ,DNA-(Apurinic or Apyrimidinic Site) Lyase ,Humans ,AP site ,Molecular Biology ,Cell Proliferation ,030304 developmental biology ,0303 health sciences ,Nuclear Functions ,Nuclear Proteins ,Acetylation ,Articles ,Cell Biology ,Base excision repair ,DNA-(apurinic or apyrimidinic site) lyase ,Molecular biology ,Protein Transport ,RNA, Ribosomal ,APE1 ,030220 oncology & carcinogenesis ,Mutant Proteins ,Nucleophosmin ,Cell Nucleolus ,DNA Damage ,HeLa Cells ,Protein Binding - Abstract
The functional importance of APE1 nucleolar accumulation is described. It is shown that acetylation of Lys27–35, affecting local conformation, regulates APE1 function by 1) controlling its interaction with NPM1 and rRNA and its nucleolar accumulation, 2) modulating K6/K7 acetylation status, and 3) promoting APE1 BER activity in cells., Apurinic/apyrimidinic endonuclease 1 (APE1) is the main abasic endonuclease in the base excision repair (BER) pathway of DNA lesions caused by oxidation/alkylation in mammalian cells; within nucleoli it interacts with nucleophosmin and rRNA through N-terminal Lys residues, some of which (K27/K31/K32/K35) may undergo acetylation in vivo. Here we study the functional role of these modifications during genotoxic damage and their in vivo relevance. We demonstrate that cells expressing a specific K-to-A multiple mutant are APE1 nucleolar deficient and are more resistant to genotoxic treatment than those expressing the wild type, although they show impaired proliferation. Of interest, we find that genotoxic treatment induces acetylation at these K residues. We also find that the charged status of K27/K31/K32/K35 modulates acetylation at K6/K7 residues that are known to be involved in the coordination of BER activity through a mechanism regulated by the sirtuin 1 deacetylase. Of note, structural studies show that acetylation at K27/K31/K32/K35 may account for local conformational changes on APE1 protein structure. These results highlight the emerging role of acetylation of critical Lys residues in regulating APE1 functions. They also suggest the existence of cross-talk between different Lys residues of APE1 occurring upon genotoxic damage, which may modulate APE1 subnuclear distribution and enzymatic activity in vivo.
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- 2012
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127. Sequence-specific DNA recognition by the thyroid transcription factor-1 homeodomain
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Silvestro Formisano, D Civitareale, S. Guazzi, Franco Quadrifoglio, Dora Fabbro, Lucia Pellizzari, Giuseppe Damante, R Di Lauro, M. Polycarpou-Schwartz, S. Cauci, Damante, G., Fabbro, D., Pellizzari, L., Civitareale, D., Guazzi, S., Polycarpou Schwartz, M., Cauci, S., Quadrifoglio, F., Formisano, Silvestro, and DI LAURO, Roberto
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endocrine system ,Molecular Sequence Data ,Thyroid Nuclear Factor 1 ,Biology ,Antennapedia ,Methylation ,DNA-binding protein ,Structure-Activity Relationship ,chemistry.chemical_compound ,Genetics ,Binding site ,Gene ,Transcription factor ,Homeodomain Proteins ,Base Composition ,Binding Sites ,Base Sequence ,Oligonucleotide ,Genes, Homeobox ,Nuclear Proteins ,DNA ,respiratory system ,DNA-Binding Proteins ,DNA binding site ,Biochemistry ,chemistry ,Mutagenesis ,Antennapedia Homeodomain Protein ,Gene Deletion ,Transcription Factors - Abstract
The molecular basis for the DNA binding specificity of the thyroid transcription factor 1 homeodomain (TTF-1HD) has been investigated. Methylation and ethylation interference experiments show that the TTF-1HD alone recapitulates the DNA binding properties of the entire protein. Studies carried out with mutant derivatives of TTF-1HD indicate a precise correspondence of some of its amino acid residues with specific bases in its binding site, allowing a crude orientation of the TTF-1HD within the protein-DNA complex. TTF-1HD shows an overall geometry of interaction with DNA similar to that previously observed for Antennapedia class HDs, even though the binding specificities of these two types of HDs are distinct. We demonstrate that the crucial difference between the binding sites of Antennapedia class and TTF-1 HDs is in the motifs 5'-TAAT-3', recognized by Antennapedia, and 5'-CAAG-3', preferentially bound by TTF-1. Furthermore, the binding of wild type and mutants TTF-1 HD to oligonucleotides containing either 5'-TAAT-3' or 5'-CAAG-3' indicate that only in the presence of the latter motif the Gln50 in TTF-1 HD is utilized for DNA recognition. Since the Gln at position 50 is an essential determinant for DNA binding specificity for several other HDs that bind to 5'-TAAT-3' containing sequences, we suggest that utilization by different HDs of key residues may depend on the sequence context and probably follows a precise hierarchy of contacts.
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- 1994
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128. Critical lysine residues within the overlooked N-terminal domain of human APE1 regulate its biological functions
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Carlo Pedone, Carlo Vascotto, Luigi Vitagliano, Laura Cesaratto, Franco Quadrifoglio, Andrea Scaloni, Milena Romanello, J. Pablo Radicella, Daniela Marasco, Gianluca Tell, Damiano Fantini, Mattia Poletto, Chiara D'Ambrosio, Stabilité génétique, Cellules Souches et Radiations (SCSR (U_967)), Université Paris-Sud - Paris 11 (UP11)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université de Paris (UP), Istituto di Biostrutture e Bioimmagine, Consiglio Nazionale delle Ricerche (CNR), Istituto di Biostructure e Bioimmagini, Istituto di Biostructure e Bioimmagini-CNR, Fantini, D., Vascotto, C., Marasco, Daniela, D'Ambrosio, C., Romanello, M., Vitagliano, L., Pedone, C., Poletto, M., Cesaratto, L., Quadrifoglio, F., Scaloni, A., Radicella, J. P., Tell, G., Cellules Souches et Radiations (SCSR (U967 / UMR-E_008)), Université Paris-Sud - Paris 11 (UP11)-Université Paris Diderot - Paris 7 (UPD7)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut National de la Santé et de la Recherche Médicale (INSERM), Université Paris-Sud - Paris 11 (UP11)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université Paris Cité (UPCité), and National Research Council of Italy | Consiglio Nazionale delle Ricerche (CNR)
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Molecular Sequence Data ,DNA repair ,SPR ,[SDV.BC.BC]Life Sciences [q-bio]/Cellular Biology/Subcellular Processes [q-bio.SC] ,Biology ,EMSA ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Sequence Analysis, Protein ,DNA-(Apurinic or Apyrimidinic Site) Lyase ,Genetics ,Humans ,AP site ,Amino Acid Sequence ,Binding site ,Transcription factor ,Phylogeny ,ComputingMilieux_MISCELLANEOUS ,030304 developmental biology ,Regulation of gene expression ,0303 health sciences ,Binding Sites ,Nucleic Acid Enzymes ,Lysine ,RNA ,Acetylation ,[SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular biology ,Base excision repair ,DNA-(apurinic or apyrimidinic site) lyase ,Protein Structure, Tertiary ,ABASIC ENDONUCLEASE ACTIVITY ,BASE EXCISION-REPAIR ,HUMAN APURINIC/APYRIMIDINIC ENDONUCLEASE ,DNA-REPAIR ,MAMMALIAN-CELLS ,PROTEIN ,APE1/REF-1 ,SEQUENCE ,DAMAGE ,REDOX ,Biochemistry ,chemistry ,030220 oncology & carcinogenesis ,Peptides ,Nucleophosmin ,DNA ,HeLa Cells - Abstract
Apurinic/apyrimidinic endonuclease 1 (APE1), an essential protein in mammals, is involved in base excision DNA repair (BER) and in regulation of gene expression, acting as a redox co-activator of several transcription factors. Recent findings highlight a novel role for APE1 in RNA metabolism, which is modulated by nucleophosmin (NPM1). The results reported in this article show that five lysine residues (K24, K25, K27, K31 and K32), located in the APE1 N-terminal unstructured domain, are involved in the interaction of APE1 with both RNA and NPM1, thus supporting a competitive binding mechanism. Data from kinetic experiments demonstrate that the APE1 N-terminal domain also serves as a device for fine regulation of protein catalytic activity on abasic DNA. Interestingly, some of these critical lysine residues undergo acetylation in vivo. These results suggest that protein-protein interactions and/or post-translational modifications involving APE1 N-terminal domain may play important in vivo roles, in better coordinating and fine-tuning protein BER activity and function on RNA metabolism.
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- 2010
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129. Differential proteomic analysis of subfractioned human hepatocellular carcinoma tissues
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Erika Codarin, Alessandra Poz, Claudio Avellini, Simona Arena, Francesco Lupo, Umberto Baccarani, Andrea Scaloni, Franco Quadrifoglio, Vittorio Di Maso, Claudio Tiribelli, Giovanni Renzone, Gianluca Tell, S.L. Crocè, Codarin, E, Renzone, G, Poz, A, Avellini, C, Baccarani, U, Lupo, F, DI MASO, V, Croce', Saveria, Tiribelli, Claudio, Arena, S, Quadrifoglio, F, Scaloni, A, and Tell, G.
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cell nucleus ,biomarkers ,General Chemistry ,hepatocellular carcinoma ,Biology ,medicine.disease ,Biochemistry ,Molecular biology ,Differential analysis ,Fight-or-flight response ,Pathogenesis ,Cell nucleus ,medicine.anatomical_structure ,Liver ,HCC ,Potential biomarkers ,Hepatocellular carcinoma ,medicine ,Cancer research ,Cytoskeleton ,Gene - Abstract
To discover new potential biomarkers of HCC, we used 2-DE gel separation and MALDI-TOF-MS analysis of partially enriched nuclear fractions from liver biopsies of 20 different patients. We obtained a proteomic map of subfractioned liver samples including about 200 common protein spots, among which identified components corresponded to expression products of 52 different genes. A differential analysis of proteins from tumoral and control tissues revealed a significant change in the expression level of 16 proteins associated to cytoskeletal, stress response and metabolic functions. These data may provide novel candidate biomarkers for HCC and useful insights for understanding the mechanisms of HCC pathogenesis and progression.
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- 2009
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130. APE1/Ref-1 interacts with NPM1 within nucleoli and plays a role in the rRNA quality control process
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Antonio Leonardi, Carlo Vascotto, Damiano Fantini, Marta Deganuto, Franco Quadrifoglio, Chiara D'Ambrosio, Mark R. Kelley, Laura Cesaratto, J. Pablo Radicella, Gianluca Tell, Andrea Scaloni, Milena Romanello, Vascotto, C., Fantini, D., Romanello, M., Cesaratto, L., Deganuto, M., Leonardi, Antonio, Radicella, J. P., Kelley, M. R., D'Ambrosio, C., Scaloni, A., Quadrifoglio, F., and Tell, G.
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Transcription, Genetic ,DNA repair ,Protein domain ,Ribosome biogenesis ,interactome ,Biology ,OXIDATION ,Binding, Competitive ,Peptide Mapping ,Protein Interaction Mapping ,RNA, Ribosomal, 28S ,Transcriptional regulation ,DNA-(Apurinic or Apyrimidinic Site) Lyase ,RNA, Ribosomal, 18S ,Humans ,AP site ,Electrophoresis, Gel, Two-Dimensional ,Molecular Biology ,Transcription factor ,Cell Proliferation ,GENE-EXPRESSION ,Cell Cycle ,Nuclear Proteins ,HUMAN AP-ENDONUCLEASE ,Cell Biology ,Endoplasmic reticulum localization ,Articles ,DNA ,EARLY EVENT ,Molecular biology ,Cell biology ,Protein Structure, Tertiary ,ALZHEIMERS-DISEASE ,PROTEIN B23 ,CELL-DEATH ,RNA processing ,RNA, Ribosomal ,APE1 ,Protein Biosynthesis ,ABASIC ENDONUCLEASE ,DNA-REPAIR ,Protein Multimerization ,HUMAN APURINIC/APYRIMIDINIC ENDONUCLEASE ,Nucleophosmin ,Oxidation-Reduction ,Nuclear localization sequence ,Cell Nucleolus ,HeLa Cells ,Protein Binding - Abstract
APE1/Ref-1 (also called HAP1 or APEX, and here referred to as APE1), the mammalian ortholog of Escherichia coli Xth (exonuclease III), is a vital protein (20) that acts as a master regulator of cellular response to oxidative stress conditions and contributes to the maintenance of genome stability (55, 56). APE1 is involved in both the base excision repair (BER) pathways of DNA lesions, acting as the major apurinic/apyrimidinic (AP) endonuclease, and in transcriptional regulation of gene expression as a redox coactivator of different transcription factors, such as early growth response protein 1 (Egr-1), NF-κB, and p53 (55, 56). These two biological activities are located in two functionally distinct protein domains. In fact, the N-terminal region, containing the nuclear localization signal (NLS) sequence, is principally devoted to redox activity through Cys65, while the C-terminal one exerts enzymatic activity on the abasic sites of DNA (56, 63). The protein C terminus is highly conserved during phylogenesis, while the N terminus is not. Except in mammals, which always show a high sequence conservation (more than 90%), and Danio, Drosophila, Xenopus, and Dictyostelium (presenting a sequence identity of less than 40%), the N-terminal region is mostly absent in other organisms. A third APE1 function, which is regulated by Lys6/Lys7 acetylation (7), is indirect binding to the negative calcium response elements (nCaRE) of some promoters (i.e., PTH and APE1 promoters), thus acting as a transcriptional repressor (12, 30). In different mammalian cell types, the APE1 subcellular distribution is mainly nuclear and is critical for controlling cellular proliferative rate (20, 25, 28). However, cytoplasmic, mitochondrial, and endoplasmic reticulum localization has also been reported (11, 22, 33, 50, 54). Interestingly, cytoplasmic expression of APE1 has been correlated with aggressiveness of different tumors (55, 56), although its role in tumorigenic processes is completely unknown. To date, no subnuclear distribution of APE1 has been reported. APE1 is an abundant protein (about 104 to 105 copies/cell) within eukaryotic cells and has a relatively long half-life (about 8 h). Thus, fine-tuning of the multiple APE1 functions may reside on its posttranslational modifications and on the modulation of its interactome under different conditions. While some posttranslational modifications have a functional role (i.e., Lys6/Lys7 acetylation) (7, 17), little information is available on APE1 protein interacting partners, except for those that are involved in BER function (38). Interestingly, proteolysis at residue Lys31 has recently been related to an enhanced immune cell death mediated by granzymes A and K (16, 23). This proteolytic event reduces APE1 accumulation within nuclei (16, 29) and its interaction with XRCC1 (60) and alters APE1 functions (16, 23). Recently, proteolysis occurring at Asn33 (giving rise to a protein form called NΔ33APE1) has also been described (11), suggesting that removal of the NLS may constitute a general mechanism for redirecting APE1 toward noncanonical subcellular compartments, such as mitochondria (11, 33, 54). Unfortunately, neither has the specific protease responsible for this cleavage been identified in nonimmune cells, nor has the mitochondrial localization signal been mapped yet. Mitochondrial localization of APE1 could be associated with a potential role in mtDNA repair of oxidized bases (11, 33, 54). However, since it is not clear whether NΔ33APE1 maintains its DNA repair activity in vivo (16) or acquires an aspecific endonuclease activity for double-stranded DNA (dsDNA) (66), at present it is not possible to drive any definitive conclusion. Moreover, as the truncated NΔ33APE1 form is associated with an apoptotic phenotype (23), it cannot be excluded that its generation may causatively be involved in the cytotoxic effect, driving proapoptotic triggering directly within mitochondria. The first 42 amino acids of APE1 are highly unordered in the protein crystallographic structure (3, 35), while the remainder of the protein has a globular fold (21). It is therefore presumable that the protein's N terminus is used for interacting with other partners, thus modulating the different APE1 functions. Interestingly, a similar bipartite arrangement for Rrp1, the Drosophila homologue of mammalian APE1, has been described, pointing out a functional role of the unstructured N-terminal domain in modulating protein-protein interactions (42, 52). By using an unbiased proteomic approach, in this work we have identified and characterized a novel APE1 complex. We found that APE1 N terminus is essential for binding to a number of proteins involved in ribosome biogenesis and RNA processing. Among the interacting partners, we focused on the nucleophosmin (NPM1)-APE1 interaction. NPM1 is an abundant protein which specifically resides within the granular region of the nucleolus and has been implicated in a variety of cellular processes, including centrosome duplication, maintenance of the genome's integrity, and ribosome biogenesis (19). NPM1 has a chaperone activity regulated by phosphorylation (51) and an endoribonuclease activity at a specific site of the spacer region between the 5.8S and the 28S rRNAs (43). Here, we demonstrate that the NPM1-APE1 interaction is required for APE1 subnuclear localization and for modulating the cleansing process of rRNA. Our data demonstrate that APE1 affects cell growth by directly acting on RNA quality control mechanisms, thus possibly affecting gene expression through posttranscriptional mechanisms.
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- 2009
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131. APE1/Ref-1 regulates PTEN expression mediated by EGR-1
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Damiano Fantini, Carlo Vascotto, Marta Deganuto, Nicoletta Bivi, Stefano Gustincich, Gabriella Marcon, Franco Quadrifoglio, Giuseppe Damante, Kishor K. Bhakat, Sankar Mitra, Gianluca Tell, Fantini, D, Vascotto, Carlo, Deganuto, M, Bivi, N, Gustincich, S, Marcon, Gabriella, Quadrifoglio, F, Damante, Giuseppe, Bhakat, K. K, Mitra, and Tell, Gianluca
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Egr-1 ,PTEN ,Time Factors ,DNA repair ,oxidative stress response ,Biology ,Hydroxamic Acids ,Transfection ,Biochemistry ,Article ,Histone Deacetylases ,histone acetyltransferase inhibitors ,DNA-(Apurinic or Apyrimidinic Site) Lyase ,Humans ,Enzyme Inhibitors ,RNA, Small Interfering ,Promoter Regions, Genetic ,Transcription factor ,Early Growth Response Protein 1 ,Cell Nucleus ,APE1/Ref-1 ,PTEN Phosphohydrolase ,Acetylation ,Hydrogen Peroxide ,General Medicine ,HCT116 Cells ,Molecular biology ,Up-Regulation ,Histone Deacetylase Inhibitors ,Butyrates ,Oxidative Stress ,Histone ,siRNA ,biology.protein ,RNA Interference ,Histone deacetylase ,Tumor Suppressor Protein p53 ,Signal transduction ,HeLa Cells ,Signal Transduction - Abstract
APE1/Ref-1, the mammalian ortholog of E. coli Xth, and a multifunctional protein possessing both DNA repair and transcriptional regulatory activities, has dual role in controlling cellular response to oxidative stress. It is rate-limiting in repair of oxidative DNA damage including strand breaks and also has co-transcriptional activity by modulating genes expression directly regulated by Egr-1 and p53 transcription factors. PTEN, a phosphoinositide phosphatase, acts as an 'off' switch in the PI-3 kinase/Akt signalling pathway and regulates cell growth and survival. It is shown here that transient alteration in the APE1 level in HeLa cells modulates PTEN expression and that acetylatable APE1 is required for the activation of the PTEN gene. Acetylation of APE1 enhances its binding to distinct trans-acting complexes involved in activation or repression. The acetylated protein is deacetylated in vivo by histone deacetylases. It was found that exposure of HeLa cells to H(2)O(2) and to histone deacetylase inhibitors increases acetylation of APE1 and induction of PTEN. The absence of such induction in APE1-downregulated HeLa cells confirmed APE1's role in regulating inducible PTEN expression. That APE1-dependent PTEN expression is mediated by Egr-1 was supported by experiments with cells ectopically expressing Egr-1. Thus, the data open new perspectives in the comprehension of the many functions exerted by APE1 in controlling cell response to oxidative stress.
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- 2008
132. Bilirubin-induced cell toxicity involves PTEN activation through an APE1/Ref-1-dependent pathway
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Laura Cesaratto, J. Donald Ostrow, Marta Deganuto, Franco Quadrifoglio, Sebastian Calligaris, Carlo Vascotto, Claudio Tiribelli, Cristina Bellarosa, Gianluca Tell, Cesaratto, L, Calligaris, S, Vascotto, C, Deganuto, M, Bellarosa, C, Quadrifoglio, F, Ostrow, Jd, Tiribelli, Claudio, and Tell, G.
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Cell signaling ,Tumor suppressor gene ,Cell Survival ,Cellular differentiation ,Cell ,Apoptosis ,Electrophoretic Mobility Shift Assay ,Cell Communication ,Mice ,Downregulation and upregulation ,Drug Discovery ,medicine ,DNA-(Apurinic or Apyrimidinic Site) Lyase ,PTEN ,Animals ,Humans ,RNA, Small Interfering ,Genetics (clinical) ,Cell Proliferation ,biology ,Cell growth ,PTEN Phosphohydrolase ,Bilirubin ,Cell Differentiation ,Transfection ,Fibroblasts ,Cell biology ,Acetylcysteine ,Enzyme Activation ,medicine.anatomical_structure ,Gene Expression Regulation ,biology.protein ,Cancer research ,Molecular Medicine ,Reactive Oxygen Species ,HeLa Cells ,Transcription Factors - Abstract
Unconjugated bilirubin (UCB) is the major degradation product of the heme catabolism. A growing body of evidences suggests that UCB plays major biological effects by inhibiting cell proliferation in cancer cell lines and eliciting cell toxicity particularly in neurons and glial cells. Early molecular events responsible for bilirubin-induced cytotoxicity remain poorly understood. Using HeLa cells and mouse embryonic fibroblasts, we found that UCB at a concentration of free pigment (Bf) of 80 nM induced oxidative stress, promoting a significant increase in intracellular reactive oxygen species (ROS) and a decreased cell survival (by the MTT test). The ROS increase activated the antioxidant cell response through APE1/Ref-1, a master redox regulator in eukaryotic cells. Activation of APE1/Ref-1 was followed by a concomitant activation of Egr-1 transcription factor and by an upregulation of PTEN tumor suppressor, an Egr-1 target gene, leading to inhibition of cell growth. Blocking ROS generation with N-acetylcysteine pretreatment, restored cell survival, limited the upregulation of PTEN in response to UCB, and prevented the inhibition of cell proliferation. HeLa cells transfected with mutants of the PTEN promoter or silenced with APE1/Ref-1 small interference RNA confirmed that UCB modulates a signaling pathway involving APE1/Ref-1, Egr-1, and PTEN. These findings describe a new molecular pathway involved in the cytotoxic effects of UCB.
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- 2007
133. Subcellular Localization of APE1/Ref-1 in Human Hepatocellular Carcinoma: Possible Prognostic Significance
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Erika Codarin, Carlo Alberto Beltrami, Natalia Rosso, Laura Cesaratto, Giorgio Bedogni, Claudio Avellini, Vittorio Di Maso, Claudio Tiribelli, Gianluca Tell, Lory Saveria Crocè, Franco Quadrifoglio, DI MASO, V, Avellini, C, Croce', Saveria, Rosso, N, Quadrifoglio, F, Cesaratto, L, Codarin, E, Bedogni, G, Beltrami, Ca, Tell, G, and Tiribelli, Claudio
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Male ,Pathology ,medicine.medical_specialty ,Carcinoma, Hepatocellular ,Cirrhosis ,Biology ,Models, Biological ,DNA-(Apurinic or Apyrimidinic Site) Lyase ,Genetics ,medicine ,Carcinoma ,Humans ,Molecular Biology ,Molecular Medicine ,Genetics (clinical) ,Survival analysis ,hepatocellular carcinoma ,ape1Ref1 ,Proportional hazards model ,Liver Neoplasms ,Articles ,Prognosis ,medicine.disease ,Subcellular localization ,Immunohistochemistry ,Survival Analysis ,Molecular medicine ,digestive system diseases ,Hepatocellular carcinoma ,Regression Analysis ,Female ,Subcellular Fractions - Abstract
bstract: APE1/Ref-1, normally localized in the nucleus, is a regulator of the cellular response to oxidative stress. Cytoplasmic localization has been observed in several tumors and correlates with a poor prognosis. Because no data are available on liver tumors, we investigated APE1/Ref-1 subcellular localization and its correlation with survival in 47 consecutive patients undergoing hepatocellular carcinoma (HCC) resection, APE 1 /Ref-1 expression was determined by immunohistochemistry in HCC and surrounding liver cirrhosis (SLC) and compared with normal liver tissue. Survival probability was evaluated using Kaplan-Meier curves (log-rank test) and Cox regression. Cytoplasmic expression of APE 1 /Ref-1 was significantly higher in HCC than in SLC (P = 0.00001); normal liver showed only nuclear reactivity. Patients with poorly differentiated HCC showed a cytoplasmic expression three times higher than those with well-differentiated HCC (P = 0.03). Cytoplasmic localization was associated with a median survival time shorter than those with negative cytoplasmic reactivity (0.44 compared with 1.64 years, P = 0.003), and multivariable analysis confirmed that cytoplasmic APE I /Ref-1 localization is a predictor of survival. Cytoplasmic expression of APE 1 /Ref-1 is increased in HCC and is associated with a lower degree of differentiation and a shorter survival time, pointing to the use of the cytoplasmic localization of APE1/Ref-1 as a prognostic marker for HCC.
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- 2007
134. Extracellular nucleotides activate Runx2 in the osteoblast-like HOBIT cell line: a possible molecular link between mechanical stress and osteoblasts' response
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Alex Pines, Adalberto Costessi, Giuseppe Damante, Laura Cesaratto, Milena Romanello, Gianluca Tell, Paola D'Andrea, Franco Quadrifoglio, Luigi Moro, Costessi, A, Pines, A, D'Andrea, Paola, Romanello, M, Damante, G, Cesaratto, L, Quadrifoglio, F, Moro, L, and Tell, G.
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MAPK/ERK pathway ,HOBIT cell line ,Cytoplasm ,Histology ,purinorecettori ,Mechanical stress ,protein chinasi ,Physiology ,Endocrinology, Diabetes and Metabolism ,Runx2 ,Core Binding Factor Alpha 1 Subunit ,Uridine Triphosphate ,Cell Line ,Endocrinology ,Adenosine Triphosphate ,Extracellular ,medicine ,espressione genica ,Humans ,Transcription factor ,Protein kinase C ,Cell Nucleus ,osteogenesi ,Osteoblasts ,biology ,Kinase ,Osteoblast ,Extracellular Fluid ,Cell biology ,RUNX2 ,Diabetes and Metabolism ,DNA-Binding Proteins ,medicine.anatomical_structure ,Biochemistry ,Oligodeoxyribonucleotides ,Transcription Factor AP-2 ,Mitogen-activated protein kinase ,biology.protein ,Trans-Activators ,Stress, Mechanical ,Protein Binding ,Transcription Factors - Abstract
Dynamic mechanical loading increases bone density and strength and promotes osteoblast proliferation, differentiation and matrix production, by acting at the gene expression level. Molecular mechanisms through which mechanical forces are conversed into biochemical signalling in bone are still poorly understood. A growing body of evidence point to extracellular nucleotides (i.e., ATP and UTP) as soluble factors released in response to mechanical stimulation in different cell systems. Runx2, a fundamental transcription factor involved in controlling osteoblasts differentiation, has been recently identified as a target of mechanical signals in osteoblastic cells. We tested the hypothesis that these extracellular nucleotides could be able to activate Runx2 in the human osteoblastic HOBIT cell line. We found that ATP and UTP treatments, as well as hypotonic stress, promote a significant stimulation of Runx2 DNA-binding activity via a mechanism involving PKC and distinct mitogen-activated protein kinase cascades. In fact, by using the specific inhibitors SB203580 (specific for p38 MAPK) and PD98059 (specific for ERK-1/2 MAPK), we found that ERK-1/2, but not p38, play a major role in Runx2 activation. On the contrary, another important transcription factor, i.e., Egr-1, that we previously demonstrated being activated by extracellular released nucleotides in this osteoblastic cell line, demonstrated to be susceptible to both ERK-1/2 and p38 kinases. These data suggest a possible differential involvement of these two transcription factors in response to extracellularly released nucleotides. The biological relevance of our data is strengthened by the finding that a target gene of Runx2, i.e., Galectin-3, is up-regulated by ATP stimulation of HOBIT cells with a comparable kinetic of that found for Runx2. Since it is known that osteocytes are the primary mechanosensory cells of the bone, we hypothesize that they may signal mechanical loading to osteoblasts through release of extracellular nucleotides. Altogether, these data suggest a molecular mechanism explaining the purinoreceptors-mediated activation of specific gene expression in osteoblasts and could be of help in setting up new pharmacological strategies for the intervention in bone loss pathologies.
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- 2004
135. Correlation of local Interleukin-1beta Levels with Specific IgA Response against Gardnerella vaginalis Cytolysin in Women with Bacterial Vaginosis
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Cauci, Sabina, Driussi, S, Guaschino, S, Isola, Miriam, Quadrifoglio, Franco, Cauci, S, Driussi, S, Guaschino, Secondo, Isola, M, and Quadrifoglio, F.
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- 2002
136. Prevalence of bacterial vaginosis and vaginal flora changes in peri- and postmenopausal women
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Paolo Lanzafame, Francesco De Seta, Sabina Cauci, Davide De Santo, Secondo Guaschino, Silvia Driussi, Teresa Iannicelli, Franco Quadrifoglio, Paola Penacchioni, Domenico De Aloysio, Cauci, S, Driussi, S, DE SANTO, D, Penacchioni, P, Iannicelli, T, Lanzafame, P, DE SETA, Francesco, Quadrifoglio, F, DE ALOYSIO, D, and Guaschino, Secondo
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Adult ,Microbiology (medical) ,medicine.medical_specialty ,Epidemiology ,medicine.medical_treatment ,Vaginal disease ,Prevalence ,medicine ,Humans ,Aged ,Climacteric ,Vaginitis ,Gynecology ,Bacteriological Techniques ,business.industry ,Vaginal flora ,Estrogen Replacement Therapy ,Hormone replacement therapy (menopause) ,Vaginosis, Bacterial ,Middle Aged ,medicine.disease ,Postmenopause ,Menopause ,Lactobacillus ,medicine.anatomical_structure ,Vagina ,Female ,Nugent score ,Bacterial vaginosis ,business - Abstract
Our aim was to evaluate the prevalence of bacterial vaginosis and decrease in lactobacillus colonization in women 40 years old or older in relation to menopausal status by evaluation of Gram-stained smears. A total of 1,486 smears from Italian Caucasian women aged 40 to 79 years were examined. Women were classified as follows: fertile (regular cycles) ( n = 328), perimenopausal (irregular cycles) ( n = 237), and postmenopausal ( n = 921), including 331 women on estroprogestinic hormone replacement therapy (HRT). The prevalences of bacterial vaginosis (assessed as a Nugent score of ≥7) in fertile (9.8%) and perimenopausal (11.0%) women were not statistically different, whereas the prevalence was significantly lower overall in postmenopausal women (6.0%) ( P = 0.02). Specifically, 6.3% of postmenopausal women without HRT and 5.4% of postmenopausal women with HRT were positive for bacterial vaginosis. The Nugent score system was not adequate for evaluating the normal and intermediate vaginal flora in women over the age of 40 years. High numbers of peri- and postmenopausal women had no lactobacilli and no bacterial-vaginosis-associated microorganisms. This nonpathological absence of lactobacilli in women with a Nugent score of 4 was scored as 4∗, and this group was considered separately from the intermediate flora group. A score of 4∗ was obtained for 2.1% of fertile women, 11.4% of perimenopausal women, 44.1% of postmenopausal women without HRT, and 6.9% of postmenopausal women with HRT. The physiological reduction in lactobacillus colonization of the vagina in postmenopausal women does not cause an increase in bacterial-vaginosis prevalence. Reversion of lactobacillus flora to premenopausal levels due to HRT does not increase the prevalence of bacterial vaginosis in postmenopausal women.
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- 2002
137. pH INDUCED TRANSITION OF POLYMETHACRYLIC ACID IN AQUEOUS SOLUTION. NOTE II. STEREOREGULAR POLYACIDS
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Quadrifoglio, F
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- 1965
138. 'Effect of unmodified triple helix-forming oligodeoxyribonucleotide targeted to human multidrug-resistance gene mdr1 in MDR cancer cells'
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Franco Quadrifoglio, Bruna Scaggiante, Giuseppe Tolazzi, Carla Morassutti, Michele Baccarani, Angela Michelutti, Scaggiante, Bruna, Morassutti, C, Tolazzi, G, Michelutti, A, Baccarani, M, and Quadrifoglio, F.
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Oligodeoxyribonucleotide ,Molecular Sequence Data ,Biophysics ,Multidrug resistance ,Nucleic Acid Denaturation ,Biochemistry ,Cell Line ,chemistry.chemical_compound ,Structural Biology ,RNA polymerase ,Genetics ,Tumor Cells, Cultured ,Coding region ,Humans ,mdr1 ,ATP Binding Cassette Transporter, Subfamily B, Member 1 ,RNA, Messenger ,Molecular Biology ,Gene ,CEM-VLB100 cell ,P-glycoprotein ,Leukemia ,biology ,Base Sequence ,Oligonucleotide ,Cell Biology ,Thionucleotides ,Molecular biology ,Drug Resistance, Multiple ,Multiple drug resistance ,chemistry ,Oligodeoxyribonucleotides ,Cancer cell ,biology.protein ,Nucleic Acid Conformation ,Triple helix - Abstract
The human mdr1 gene encodes a transmembrane glycoprotein the over-expression of which is associated with development of multidrug resistance in human tumor cells. A negative modulation of human mdr1 has been attempted via a 27-mer unmodified triple helix-forming oligonucleotide, named 1D, targeted to a homopurine sequence in the coding region of the gene. By administering 10 μM of 1D we could find a significant reduction in MDR1 mRNA levels in the human drug-resistant cell line CEM-VLB 100. This effect appears to be specific and due to a transient block of RNA polymerase mediated by triple helix formation.
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- 1994
139. Pore-forming and haemolytic properties of the Gardnerella vaginalis cytolysin
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Caterina Missero, Sabina Cauci, Gianfranco Menestrina, Monica Ropele, Franco Quadrifoglio, Tarcisio Not, Rossella Monte, Cauci, S, Monte, R, Ropele, M, Missero, Caterina, Not, T, Quadrifoglio, F, and Menestrina, G.
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Erythrocytes ,Biology ,medicine.disease_cause ,Hemolysis ,Microbiology ,Hemolysin Proteins ,medicine ,Humans ,Lipid bilayer ,Molecular Biology ,Escherichia coli ,Cytotoxins ,Toxin ,Temperature ,Hemolysin ,Hydrogen-Ion Concentration ,Clostridium perfringens ,Chromatography, Ion Exchange ,Haemolysis ,Gardnerella vaginalis ,Molecular Weight ,Kinetics ,Cholesterol ,Biochemistry ,Liposomes ,Chromatography, Gel ,Female ,Cytolysin ,Isoelectric Focusing ,Exotoxin - Abstract
The pleomorphic bacterium Gardnerella vaginalis releases in the culture broth a haemolytic exotoxin (Gvh) which is probably a virulence determinant of this unique bacterium, implicated in gynaecological and urological disorders. This 59 kDa cytolysin was purified to homogeneity in just one chromatographic step directly from the culture supernatant, a final specific activity up to 1.9 x 10(6) HU mg-1 being obtained. The toxin-induced lesion on human erythrocytes results from the formation of a pore whose radius is approximately 2.4 nm. The damage is inhibited by osmotic protectants and shows a sigmoidal dose-response profile suggesting an aggregation process of haemolysin molecules on the target membrane to create the functional lesion. The extent and the kinetics of haemolysis are strongly dependent on temperature and an activation energy of 64.0 kJ mol-1 has been derived. Lipid membranes can be very efficient inhibitors of Gvh-haemolysis, being able to bind the toxin quite avidly. The inhibitory effect requires the presence of cholesterol and it is stronger when cholesterol is mixed with negatively charged phospholipids rather than with zwitterionic phospholipids, suggesting that a negative surface potential increases the affinity of the toxin for the lipid bilayer. The functional properties of Gvh have been compared with those of Clostridium perfringens thetatoxin (PFO) and Escherichia coli haemolysin (HlyA), which are representative of widespread haemolysins produced by Gram-positive and Gram-negative bacteria, respectively. The toxin shares several features with the family of the so-called 'sulphydryl-activated' cytolysins produced by Gram-positive bacteria, although Gvh does not truly belong to this family, being deactivated by beta-mercaptoethanol and being antigenically distinct from them. We report here for the first time the detection in the vaginal fluid of infected women of a specific IgA response against the toxin.
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- 1993
140. Knock-in reconstitution studies reveal an unexpected role of Cys-65 in regulating APE1/Ref-1 subcellular trafficking and function.
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Vascotto C, Bisetto E, Li M, Zeef LA, D'Ambrosio C, Domenis R, Comelli M, Delneri D, Scaloni A, Altieri F, Mavelli I, Quadrifoglio F, Kelley MR, and Tell G
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- Apoptosis drug effects, Benzoquinones pharmacology, Cell Line, Tumor, Cell Proliferation drug effects, Cell Transformation, Neoplastic genetics, Cell Transformation, Neoplastic metabolism, Cysteine chemistry, Cysteine genetics, Cytoplasm metabolism, DNA Repair drug effects, DNA-(Apurinic or Apyrimidinic Site) Lyase antagonists & inhibitors, DNA-(Apurinic or Apyrimidinic Site) Lyase chemistry, DNA-(Apurinic or Apyrimidinic Site) Lyase genetics, Gene Knock-In Techniques, Humans, Mitochondria genetics, Mitochondrial Membrane Transport Proteins metabolism, Mitochondrial Precursor Protein Import Complex Proteins, Mutation, Oxidation-Reduction, Oxidative Stress drug effects, Propionates pharmacology, Protein Binding, Protein Folding, Protein Transport drug effects, Cysteine metabolism, DNA-(Apurinic or Apyrimidinic Site) Lyase metabolism, Mitochondria metabolism, Mitochondrial Membranes metabolism, Signal Transduction
- Abstract
Apurinic/apyrimidinic endonuclease 1/redox factor-1 (APE1) protects cells from oxidative stress via the base excision repair pathway and as a redox transcriptional coactivator. It is required for tumor progression/metastasis, and its up-regulation is associated with cancer resistance. Loss of APE1 expression causes cell growth arrest, mitochondrial impairment, apoptosis, and alterations of the intracellular redox state and cytoskeletal structure. A detailed knowledge of the molecular mechanisms regulating its different activities is required to understand the APE1 function associated with cancer development and for targeting this protein in cancer therapy. To dissect these activities, we performed reconstitution experiments by using wild-type and various APE1 mutants. Our results suggest that the redox function is responsible for cell proliferation through the involvement of Cys-65 in mediating APE1 localization within mitochondria. C65S behaves as a loss-of-function mutation by affecting the in vivo folding of the protein and by causing a reduced accumulation in the intermembrane space of mitochondria, where the import protein Mia40 specifically interacts with APE1. Treatment of cells with (E)-3-(2-[5,6-dimethoxy-3-methyl-1,4-benzoquinonyl])-2-nonyl propenoic acid, a specific inhibitor of APE1 redox function through increased Cys-65 oxidation, confirm that Cys-65 controls APE1 subcellular trafficking and provides the basis for a new role for this residue.
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- 2011
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141. Shotgun proteomics analysis reveals new unsuspected molecular effectors of nitrogen-containing bisphosphonates in osteocytes.
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Bivi N, Picotti P, Müller LN, Romanello M, Moro L, Quadrifoglio F, and Tell G
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- Animals, Blotting, Western, Diphosphonates pharmacology, Etidronic Acid pharmacology, Gene Expression Profiling, Mice, Protein Prenylation drug effects, Proteomics methods, Proto-Oncogene Proteins c-akt physiology, Risedronic Acid, Tandem Mass Spectrometry, Bone Density Conservation Agents pharmacology, Etidronic Acid analogs & derivatives, Osteocytes drug effects
- Abstract
Nitrogen-containing bisphosphonates (N-BPs) are therapeutic agents used to treat osteoporosis and promote osteoblast and osteocyte survival. The molecular mechanisms underlying this effect have been extensively studied, but the global changes induced by N-BPs at the protein level are not known. In this context, we investigated the effect of 10(-7)M Risedronate for 1h and 48h on MLO-Y4 osteocytic cells, through a quantitative, label free shotgun proteomic analysis. We described herein a preliminary proteome map of untreated MLO-Y4 cells, composed of 353 protein species. Moreover, we identified 10 and 15 differentially expressed proteins after 1h and 48h of Risedronate treatment, respectively. Among these, PARK7/DJ-1 protein levels were induced up to 3 times and this event was associated with the activation of the pro-survival Akt pathway that we propose as a novel player in the effect of N-BPs on osteocytes. Risedronate was also able to induce the expression and the secretion of the growth factor pro-granulin. In addition, protein prenylation inhibition appeared to be involved in the modulation of MLO-Y4 proteome by RIS in a protein-specific manner. In conclusion, these findings unveil novel functions targeted by N-BPs in osteocytes and could be useful to design novel pharmaceutical compounds., (Copyright © 2011 Elsevier B.V. All rights reserved.)
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- 2011
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142. Critical lysine residues within the overlooked N-terminal domain of human APE1 regulate its biological functions.
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Fantini D, Vascotto C, Marasco D, D'Ambrosio C, Romanello M, Vitagliano L, Pedone C, Poletto M, Cesaratto L, Quadrifoglio F, Scaloni A, Radicella JP, and Tell G
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- Acetylation, Amino Acid Sequence, Binding Sites, DNA-(Apurinic or Apyrimidinic Site) Lyase classification, DNA-(Apurinic or Apyrimidinic Site) Lyase metabolism, HeLa Cells, Humans, Molecular Sequence Data, Nucleophosmin, Peptides metabolism, Phylogeny, Protein Structure, Tertiary, RNA metabolism, Sequence Analysis, Protein, DNA-(Apurinic or Apyrimidinic Site) Lyase chemistry, Lysine metabolism
- Abstract
Apurinic/apyrimidinic endonuclease 1 (APE1), an essential protein in mammals, is involved in base excision DNA repair (BER) and in regulation of gene expression, acting as a redox co-activator of several transcription factors. Recent findings highlight a novel role for APE1 in RNA metabolism, which is modulated by nucleophosmin (NPM1). The results reported in this article show that five lysine residues (K24, K25, K27, K31 and K32), located in the APE1 N-terminal unstructured domain, are involved in the interaction of APE1 with both RNA and NPM1, thus supporting a competitive binding mechanism. Data from kinetic experiments demonstrate that the APE1 N-terminal domain also serves as a device for fine regulation of protein catalytic activity on abasic DNA. Interestingly, some of these critical lysine residues undergo acetylation in vivo. These results suggest that protein-protein interactions and/or post-translational modifications involving APE1 N-terminal domain may play important in vivo roles, in better coordinating and fine-tuning protein BER activity and function on RNA metabolism.
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- 2010
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143. Understanding different functions of mammalian AP endonuclease (APE1) as a promising tool for cancer treatment.
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Tell G, Fantini D, and Quadrifoglio F
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- Animals, DNA-(Apurinic or Apyrimidinic Site) Lyase chemistry, DNA-(Apurinic or Apyrimidinic Site) Lyase genetics, Humans, Neoplasms drug therapy, DNA Repair, DNA-(Apurinic or Apyrimidinic Site) Lyase antagonists & inhibitors, DNA-(Apurinic or Apyrimidinic Site) Lyase metabolism, Neoplasms enzymology
- Abstract
The apurinic endonuclease 1/redox factor-1 (APE1) has a crucial function in DNA repair and in redox signaling in mammals, and recent studies identify it as an excellent target for sensitizing tumor cells to chemotherapy. APE1 is an essential enzyme in the base excision repair pathway of DNA lesions caused by oxidation and alkylation. As importantly, APE1 also functions as a redox agent maintaining transcription factors involved in cancer promotion and progression in an active reduced state. Very recently, a new unsuspected function of APE1 in RNA metabolism was discovered, opening new perspectives for this multifunctional protein. These observations underline the necessity to understand the molecular mechanisms responsible for fine-tuning its different biological functions. This survey intends to give an overview of the multifunctional roles of APE1 and their regulation in the context of considering this protein a promising tool for anticancer therapy.
- Published
- 2010
- Full Text
- View/download PDF
144. A proteomic approach to the bilirubin-induced toxicity in neuronal cells reveals a protective function of DJ-1 protein.
- Author
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Deganuto M, Cesaratto L, Bellarosa C, Calligaris R, Vilotti S, Renzone G, Foti R, Scaloni A, Gustincich S, Quadrifoglio F, Tiribelli C, and Tell G
- Subjects
- Cell Line, Tumor, Cell Proliferation drug effects, Humans, Neuroblastoma metabolism, Neuroblastoma pathology, Oxidative Stress drug effects, Protein Deglycase DJ-1, Proteomics, Bilirubin toxicity, Cytoprotection, Intracellular Signaling Peptides and Proteins metabolism, Neuroblastoma chemistry, Oncogene Proteins metabolism
- Abstract
Unconjugated bilirubin (UCB) is a powerful antioxidant and a modulator of cell growth through the interaction with several signal transduction pathways. Although newborns develop a physiological jaundice, in case of severe hyperbilirubinemia UCB may become neurotoxic causing severe long-term neuronal damages, also known as bilirubin encephalopathy. To investigate the mechanisms of UCB-induced neuronal toxicity, we used the human neuroblastoma cell line SH-SY5Y as an in vitro model system. We verified that UCB caused cell death, in part due to oxidative stress, which leads to DNA damage and cell growth reduction. The mechanisms of cytotoxicity and cell adaptation to UCB were studied through a proteomic approach that identified differentially expressed proteins involved in cell proliferation, intracellular trafficking, protein degradation and oxidative stress response. In particular, the results indicated that cells exposed to UCB undertake an adaptive response that involves DJ-1, a multifunctional neuroprotective protein, crucial for cellular oxidative stress homeostasis. This study sheds light on the mechanisms of bilirubin-induced neurotoxicity and might help to design a strategy to prevent or ameliorate the neuronal damages leading to bilirubin encephalopathy.
- Published
- 2010
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- View/download PDF
145. APE1/Ref-1 in Alzheimer's disease: an immunohistochemical study.
- Author
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Marcon G, Tell G, Perrone L, Garbelli R, Quadrifoglio F, Tagliavini F, and Giaccone G
- Subjects
- Aged, Antibodies, Monoclonal, Autopsy, Biopsy, Brain metabolism, DNA-(Apurinic or Apyrimidinic Site) Lyase immunology, Humans, Immunohistochemistry, Middle Aged, Alzheimer Disease metabolism, DNA-(Apurinic or Apyrimidinic Site) Lyase metabolism
- Abstract
The oxidative injury in Alzheimer's disease (AD), in which amyloid beta protein induces production of reactive oxygen species, may be cause of neurodegeneration. APE1/Ref-1 is a protein involved in DNA repair and in redox co-activating function over different transcription factors. We investigated by immunohistochemistry using a highly specific monoclonal antibody, the localization of APE1/Ref-1 in autoptic and bioptic AD brain tissues in comparison with brains with unrelated pathological or normal conditions. Reliable APE1/Ref-1 immunostaining was obtained in biopsies, but not in autoptic tissues. An increased nuclear expression of APE1/Ref-1 in AD cerebral cortex supports the view that the cellular adaptive response to the oxidative stress condition is involved in the pathogenesis of this disease.
- Published
- 2009
- Full Text
- View/download PDF
146. Transcriptome and proteome analysis of osteocytes treated with nitrogen-containing bisphosphonates.
- Author
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Bivi N, Bereszczak JZ, Romanello M, Zeef LA, Delneri D, Quadrifoglio F, Moro L, Brancia FL, and Tell G
- Subjects
- Animals, Bone Density Conservation Agents pharmacology, Cells, Cultured, Chromatography, Liquid, Electrophoresis, Gel, Two-Dimensional, Etidronic Acid pharmacology, Gene Expression Profiling, Isotope Labeling methods, Osteocytes drug effects, Risedronic Acid, Spectrometry, Mass, Electrospray Ionization, Diphosphonates pharmacology, Etidronic Acid analogs & derivatives, Osteocytes metabolism, Proteome metabolism, RNA, Messenger metabolism
- Abstract
We combined high-throughput screening of differential mRNAs with mass spectrometric characterization of proteins obtained from osteocytes untreated and treated with Risedronate. Microarray analysis revealed, upon treatment, a marked upregulation of messengers encoding zinc-proteins. MS analysis identified 84 proteins in the osteocytes proteome map. Risedronate affected the expression of 10 proteins, associated with cytoskeleton, stress-response and metabolism. Data validated using gel imaging in combination with the GLaD post digestion isotopic labeling method provide the molecular basis for understanding the role of bisphosphonates as antiapoptotic drugs for osteocytes.
- Published
- 2009
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147. The many functions of APE1/Ref-1: not only a DNA repair enzyme.
- Author
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Tell G, Quadrifoglio F, Tiribelli C, and Kelley MR
- Subjects
- DNA-(Apurinic or Apyrimidinic Site) Lyase genetics, Gene Expression Regulation, Humans, Oxidation-Reduction, Transcription Factors genetics, Transcription Factors physiology, DNA Repair, DNA-(Apurinic or Apyrimidinic Site) Lyase physiology
- Abstract
APE1/Ref-1 (APE1), the mammalian ortholog of Escherichia coli Xth, and a multifunctional protein possessing both DNA repair and transcriptional regulatory activities, has a pleiotropic role in controlling cellular response to oxidative stress. APE1 is the main apurinic/apyrimidinic endonuclease in eukaryotic cells, playing a central role in the DNA base excision repair pathway of all DNA lesions (uracil, alkylated and oxidized, and abasic sites), including single-strand breaks, and has also cotranscriptional activity by modulating genes expression directly regulated by either ubiquitous (i.e., AP-1, Egr-1, NFkappa-B, p53, and HIF) and tissue specific (i.e., PEBP-2, Pax-5 and -8, and TTF-1) transcription factors. In addition, it controls the intracellular redox state by inhibiting the reactive oxygen species (ROS) production. At present, information is still inadequate regarding the molecular mechanisms responsible for the coordinated control of its several activities. Both expression and/or subcellular localization are altered in several metabolic and proliferative disorders such as in tumors and aging. Here, we have attempted to coalesce the most relevant information concerning APE1's different functions in order to shed new light and to focus current and future studies to fully understand this unique molecule that is acquiring more and more interest and translational relevance in the field of molecular medicine.
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- 2009
- Full Text
- View/download PDF
148. Genome-wide analysis and proteomic studies reveal APE1/Ref-1 multifunctional role in mammalian cells.
- Author
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Vascotto C, Cesaratto L, Zeef LA, Deganuto M, D'Ambrosio C, Scaloni A, Romanello M, Damante G, Taglialatela G, Delneri D, Kelley MR, Mitra S, Quadrifoglio F, and Tell G
- Subjects
- Apoptosis, Cell Cycle, Cytoskeleton metabolism, DNA Repair, DNA-(Apurinic or Apyrimidinic Site) Lyase genetics, Data Interpretation, Statistical, Down-Regulation, Early Growth Response Protein 1 genetics, Early Growth Response Protein 1 metabolism, Gene Knockdown Techniques, HeLa Cells, Humans, Mitochondria metabolism, Oxidative Stress, RNA, Small Interfering genetics, RNA, Small Interfering metabolism, Signal Transduction, DNA-(Apurinic or Apyrimidinic Site) Lyase physiology, Gene Expression Profiling methods, Oligonucleotide Array Sequence Analysis methods, Proteomics methods
- Abstract
Apurinic apyrimidinic endonuclease/redox effector factor 1 (APE1/Ref-1) protects cells from oxidative stress by acting as a central enzyme in base excision repair pathways of DNA lesions and through its independent activity as a redox transcriptional co-activator. Dysregulation of this protein has been associated with cancer development. At present, contrasting data have been published regarding the biological relevance of the two functions as well as the molecular mechanisms involved. Here, we combined both mRNA expression profiling and proteomic analysis to determine the molecular changes associated with APE1 loss-of-expression induced by siRNA technology. This approach identified a role of APE1 in cell growth, apoptosis, intracellular redox state, mitochondrial function, and cytoskeletal structure. Overall, our data show that APE1 acts as a hub in coordinating different and vital functions in mammalian cells, highlighting the molecular determinants of the multifunctional nature of APE1 protein.
- Published
- 2009
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149. Modern strategies to identify new molecular targets for the treatment of liver diseases: The promising role of Proteomics and Redox Proteomics investigations.
- Author
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Scaloni A, Codarin E, Di Maso V, Arena S, Renzone G, Tiribelli C, Quadrifoglio F, and Tell G
- Abstract
Oxidative stress, due to an imbalance between the generation of ROS and the antioxidant defense capacity of the cell, is a major pathogenetic event occurring in several liver diseases, ranging from metabolic to proliferative. Main sources of ROS are represented by mitochondria and cytochrome P450 enzymes in the hepatocytes, Küppfer cells, and neutrophils. Oxidative stress affects major cellular components including lipids, DNA, and proteins. Through modulation of protein structure/function, ROS can influence gene expression profile by affecting intracellular signal transduction pathways. While several enzymatic and nonenzymatic markers of chronic oxidative stress are well known in liver, early protein targets of oxidative injury are yet poorly defined. Identification of these biomarkers will enable early detection of liver diseases and will allow monitoring the degree of liver damage, the response to pharmacological therapies, and the development of new therapeutic approaches. In the era of molecular medicine, new proteomic methodologies promise to establish a relationship between pathological hallmarks of the disease and protein structural/functional modifications, thus allowing a better understanding and a more rational therapy on liver disorders. Purpose of this review is to critically analyze the application of proteomic and redox proteomic approaches to the study of oxidative stress-linked liver diseases., (Copyright © 2009 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim.)
- Published
- 2009
- Full Text
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150. Identification of secondary targets of N-containing bisphosphonates in mammalian cells via parallel competition analysis of the barcoded yeast deletion collection.
- Author
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Bivi N, Romanello M, Harrison R, Clarke I, Hoyle DC, Moro L, Ortolani F, Bonetti A, Quadrifoglio F, Tell G, and Delneri D
- Subjects
- Alendronate pharmacology, Blotting, Western, Breast Neoplasms genetics, Breast Neoplasms pathology, Breast Neoplasms ultrastructure, Cell Cycle drug effects, Cell Cycle Proteins metabolism, Cell Division drug effects, Cell Division genetics, Cell Line, Tumor, Cell Movement drug effects, DNA Breaks, Double-Stranded, DNA Damage, Etidronic Acid analogs & derivatives, Etidronic Acid pharmacology, Gene Deletion, Humans, Ibandronic Acid, Microscopy, Confocal, Microscopy, Electron, Microtubules drug effects, Microtubules metabolism, Polyisoprenyl Phosphates pharmacology, RNA Interference, Risedronic Acid, Saccharomyces cerevisiae growth & development, Saccharomyces cerevisiae Proteins genetics, Saccharomyces cerevisiae Proteins metabolism, Cell Cycle Proteins genetics, Diphosphonates pharmacology, Mutation, Saccharomyces cerevisiae genetics
- Abstract
Background: Nitrogen-containing bisphosphonates are the elected drugs for the treatment of diseases in which excessive bone resorption occurs, for example, osteoporosis and cancer-induced bone diseases. The only known target of nitrogen-containing bisphosphonates is farnesyl pyrophosphate synthase, which ensures prenylation of prosurvival proteins, such as Ras. However, it is likely that the action of nitrogen-containing bisphosphonates involves additional unknown mechanisms. To identify novel targets of nitrogen-containing bisphosphonates, we used a genome-wide high-throughput screening in which 5,936 Saccharomyces cerevisiae heterozygote barcoded mutants were grown competitively in the presence of sub-lethal doses of three nitrogen-containing bisphosphonates (risedronate, alendronate and ibandronate). Strains carrying deletions in genes encoding potential drug targets show a variation of the intensity of their corresponding barcodes on the hybridization array over the time., Results: With this approach, we identified novel targets of nitrogen-containing bisphosphonates, such as tubulin cofactor B and ASK/DBF4 (Activator of S-phase kinase). The up-regulation of tubulin cofactor B may explain some previously unknown effects of nitrogen-containing bisphosphonates on microtubule dynamics and organization. As nitrogen-containing bisphosphonates induce extensive DNA damage, we also document the role of DBF4 as a key player in nitrogen-containing bisphosphonate-induced cytotoxicity, thus explaining the effects on the cell-cycle., Conclusions: The dataset obtained from the yeast screen was validated in a mammalian system, allowing the discovery of new biological processes involved in the cellular response to nitrogen-containing bisphosphonates and opening up opportunities for development of new anticancer drugs.
- Published
- 2009
- Full Text
- View/download PDF
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