1,125 results on '"Xiaofeng ZHOU"'
Search Results
102. Tofacitinib Use in Adults with Chronic Inflammatory Disease During the Severe Acute Respiratory Syndrome Coronavirus 2 Pandemic: What Is Known So Far?
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Samantha Howland, MPharm, J. Jasper Deuring, PhD, Xiaofeng Zhou, PhD, Yan Chen, MD, PhD, Licia MH Mota, MD, and Ryan C. Ungaro, MD, MS
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gastroenterology ,immunosuppressive treatment ,rheumatology ,virology ,Therapeutics. Pharmacology ,RM1-950 - Abstract
ABSTRACT: Background: Concerns have been raised that the risk of severe acute respiratory syndrome coronavirus 2 infection, or more severe or critical coronavirus disease 2019 (COVID-19), may be higher in immunocompromised individuals receiving immunomodulatory therapies compared with immunocompetent individuals. Tofacitinib is an oral Janus kinase inhibitor for the treatment of rheumatoid arthritis, psoriatic arthritis, ulcerative colitis, and polyarticular course juvenile idiopathic arthritis. To date, data on tofacitinib treatment during the COVID-19 pandemic are limited. Objectives: To summarize current understanding of the use of tofacitinib in adults during the COVID-19 pandemic, and discuss research questions that are yet to be addressed, to further inform the safe and effective use of tofacitinib in clinical practice. Methods: We conducted a review of the literature (as of February 2021), to summarize the expert recommendations for the management of rheumatoid arthritis, psoriatic arthritis, and ulcerative colitis in the context of COVID-19, and to assess the current data regarding the use of tofacitinib in adult patients during the pandemic. Results: Current recommendations for rheumatoid arthritis, psoriatic arthritis, and ulcerative colitis state that tofacitinib treatment should be continued during the pandemic, except in cases of positive or presumed severe acute respiratory syndrome coronavirus 2 infection. However, limited data are available; analyses of data from international rheumatology and gastroenterology registries have suggested that tofacitinib may not be associated with an increased risk of hospitalization or treatment switching in adults with COVID-19. Conclusions: Further assessment of tofacitinib use in patients with rheumatoid arthritis, psoriatic arthritis, or ulcerative colitis will be required to elucidate and establish the benefit:risk profile of tofacitinib during the current COVID-19 pandemic.
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- 2021
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103. A multi-perforation staged fracturing experimental study on hydraulic fracture initiation and propagation
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Jianguang Wei, Saipeng Huang, Guangwei Hao, Jiangtao Li, Xiaofeng Zhou, and Tong Gong
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Production of electric energy or power. Powerplants. Central stations ,TK1001-1841 ,Renewable energy sources ,TJ807-830 - Abstract
Hydraulic fracture initiation and propagation are extremely important on deciding the production capacity and are crucial for oil and gas exploration and development. Based on a self-designed system, multi-perforation cluster-staged fracturing in thick tight sandstone reservoir was simulated in the laboratory. Moreover, the technology of staged fracturing during casing completion was achieved by using a preformed perforated wellbore. Three hydraulic fracturing methods, including single-perforation cluster fracturing, multi-perforation cluster conventional fracturing and multi-perforation cluster staged fracturing, were applied and studied, respectively. The results clearly indicate that the hydraulic fractures resulting from single-perforation cluster fracturing are relatively simple, which is difficult to form fracture network. In contrast, multi-perforation cluster-staged fracturing has more probability to produce complex fractures including major fracture and its branched fractures, especially in heterogeneous samples. Furthermore, the propagation direction of hydraulic fractures tends to change in heterogeneous samples, which is more likely to form a multi-directional hydraulic fracture network. The fracture area is greatly increased when the perforation cluster density increases in multi-perforation cluster conventional fracturing and multi-perforation cluster-staged fracturing. Moreover, higher perforation cluster densities and larger stage numbers are beneficial to hydraulic fracture initiation. The breakdown pressure in homogeneous samples is much higher than that in heterogeneous samples during hydraulic fracturing. In addition, the time of first fracture initiation has the trend that the shorter the initiation time is, the higher the breakdown pressure is. The results of this study provide meaningful suggestions for enhancing the production mechanism of multi-perforation cluster staged fracturing.
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- 2020
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104. Design of an Open Electrowetting on Dielectric Device Based on Printed Circuit Board by Using a Parafilm M
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Zichuan Yi, Haoqiang Feng, Xiaofeng Zhou, and Lingling Shui
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electrowetting on dielectric ,printed circuit board ,Parafilm M ,dielectric hydrophobic layer ,open platform ,Physics ,QC1-999 - Abstract
In recent years, the open electrowetting on dielectric (EWOD) device has been widely used in biomedical detection, chemical synthesis analysis, and so on. However, the cost of using ITO glass as surface material is difficult to meet the requirement for large-scale array chip production. So, a low-cost, easy-to-manufacture open EWOD platform is designed in this paper. In hardware platform, an operation platform is prepared by using a printed circuit board (PCB) as a substrate. The electrode shape is designed as zigzag, and its surface is optimized by organic solderability preservatives (OSP). In addition, Parafilm M and silicone oil are used as a dielectric hydrophobic layer to prepare the open platform. In software, the system program is designed by C programming language, including initialization program, serial port communication program, high-voltage output port program, and interrupt program, which can be used to drive droplets. The system can achieve an effective driving voltage of 180–240 V. The moving speed of droplets can reach 15 mm/s when the droplet volume is 1850 μL and the electrode voltage output frequency is 10 Hz.
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- 2020
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105. A Bayesian Compressive Data Gathering Scheme in Wireless Sensor Networks With One Mobile Sink
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Xiangping Gu, Xiaofeng Zhou, Baohua Yuan, and Yanjing Sun
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Bayesian compressive sensing ,shuffled frog leaping algorithm ,wireless sensor networks ,data gathering ,mobile sink ,Electrical engineering. Electronics. Nuclear engineering ,TK1-9971 - Abstract
This paper studies the compressive data gathering problem in terms of Bayesian theory for wireless sensor networks (WSNs) with a mobile sink. In such WSNs, designing an optimal tour path for sink is a challenge task, because topology is time-varying and needs to consider latency. In this paper, we formulate the above-mentioned issue as an optimal problem. To resolve the NP-hard problem, a modified shuffled frog leaping algorithm with a delay constraint is provided, where chaos techniques are utilized to obtain a diversified population and an adaptive step update strategy is given to accelerate convergence ratio. In particular, a novel Bayesian compressive sensing-data gathering strategy is introduced, where constraint selection schedule of gathering nodes (GNs) is developed. It jointly considers nodes' residual energy and distance to the center of deployment area, thereby balancing network load. Mobile sink only visits those GNs rather than all sensor nodes (SNs) along the controlled path. In addition, SNs transmit data to its own GN through the shortest path, and thus, they are included within the same region called cell. More importantly, the capacity of our proposed scheme is analyzed, and we derive that it can achieve Θ(W/(M × (2 + Δ)2)) capacity per node. Finally, extensive simulations are implemented to demonstrate the efficiency of the proposed algorithm.
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- 2018
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106. Influenza Vaccination Coverage among Older Adults with Hypertension in Shenzhen, China: A Cross-Sectional Survey during the COVID-19 Pandemic
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Qiushuang Li, Minyi Zhang, Hongbiao Chen, Fei Wu, Juxian Xian, Liting Zheng, Minyi Liang, He Cao, Xiaofeng Zhou, Zihao Gu, Qihui Lin, and Qing Chen
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older adults ,hypertension ,influenza vaccination coverage ,COVID-19 ,Medicine - Abstract
Background: Older individuals with hypertension are at a high risk of being infected with influenza. However, there have been few studies investigating the influenza vaccination status among older people with hypertension. The present work aimed to estimate the vaccination coverage and determine the predictors of seasonal influenza vaccinations among hypertensive patients aged over 60 years in Shenzhen, China. Method: The study used data from an online cross-sectional survey that was conducted in Shenzhen City, China, in October 2020. Frequencies and proportions of all the variables including sociodemographic characteristics and health-related information were described and tabulated based on the influenza vaccination status. Bivariate and multivariable logistic regression analyses were used to identify independent predictors associated with the influenza vaccination. Results: A total of 5216 older people with hypertension aged above 60 years were recruited. Overall, only 4.7% had received an influenza vaccine in the latest influenza season. Using the action toward being vaccinated as the primary outcome, the multivariable regression analysis showed that participants aged over 80 years (aOR 2.957, 95% CI: 1.784–4.900), obtaining higher education levels (aOR 1.424, 95% CI: 1.060–1.914 for high school, aOR 1.681, 95% CI: 1.066–2.650 for college or above), living with a partner (aOR 1.432, 95% CI: 1.068–1.920), using a family doctor (aOR 2.275, 95% CI: 1.744–2.968), and taking a physical examination 1–2 and ≥3 times each year (aOR 2.107, 95% CI: 1.601–2.772 and aOR 2.118, 95% CI: 1.083–4.143, respectively) were more likely to be vaccinated. In contrast, smokers had less likelihood of having the influenza vaccination than non-smokers (aOR 1.829, 95% CI: 1.208–2.767). Conclusions: The coverage rate of influenza vaccinations is far away from optimistic among older adults with hypertension. Additional works should be undertaken immediately to improve the influenza vaccination status.
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- 2021
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107. Long-range spontaneous droplet self-propulsion on wettability gradient surfaces
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Chaoran Liu, Jing Sun, Jing Li, Chenghao Xiang, Lufeng Che, Zuankai Wang, and Xiaofeng Zhou
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Medicine ,Science - Abstract
Abstract The directional and long-range droplet transportation is of great importance in microfluidic systems. However, it usually requires external energy input. Here we designed a wettability gradient surface that can drive droplet motion by structural topography. The surface has a wettability gradient range of over 150° from superhydrophobic to hydrophilic, which was achieved by etching silicon nanopillars and adjusting the area of hydrophilic silicon dioxide plane. We conducted force analysis to further reveal the mechanism for droplet self-propulsion, and found that the nanostructures are critical to providing a large driving force and small resistance force. Theoretical calculation has been used to analyze the maximal self-propulsion displacement on different gradient surfaces with different volumes of droplets. On this basis, we designed several surfaces with arbitrary paths, which achieved directional and long-range transportation of droplet. These results clarify a driving mechanism for droplet self-propulsion on wettability gradient surfaces, and open up new opportunities for long-range and directional droplet transportation in microfluidic system.
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- 2017
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108. ‘Candidatus Liberibacter asiaticus’ Encodes a Functional Salicylic Acid (SA) Hydroxylase That Degrades SA to Suppress Plant Defenses
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Jinyun Li, Zhiqian Pang, Pankaj Trivedi, Xiaofeng Zhou, Xiaobao Ying, Hongge Jia, and Nian Wang
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Microbiology ,QR1-502 ,Botany ,QK1-989 - Abstract
Pathogens from the fastidious, phloem-restricted ‘Candidatus Liberibacter’ species cause the devastating Huanglongbing (HLB) disease in citrus worldwide and cause diseases on many solanaceous crops and plants in the Apiaceae family. However, little is known about the pathogenic mechanisms due to the difficulty in culturing the corresponding ‘Ca. Liberibacter’ species. Here, we report that the citrus HLB pathogen ‘Ca. L. asiaticus’ uses an active salicylate hydroxylase SahA to degrade salicylic acid (SA) and suppress plant defenses. Purified SahA protein displays strong enzymatic activity to degrade SA and its derivatives. Overexpression of SahA in transgenic tobacco plants abolishes SA accumulation and hypersensitive response (HR) induced by nonhost pathogen infection. By degrading SA, ‘Ca. L. asiaticus’ not only enhances the susceptibility of citrus plants to both nonpathogenic and pathogenic Xanthomonas citri but also attenuates the responses of citrus plants to exogenous SA. In addition, foliar spraying of 2,1,3-benzothiadiazole and 2,6-dichloroisonicotinic acid, SA functional analogs not degradable by SahA, displays comparable (and even better) effectiveness with SA in suppressing ‘Ca. L. asiaticus’ population growth and HLB disease progression in infected citrus trees under field conditions. This study demonstrates one or more pathogens suppress plant defenses by degrading SA and establish clues for developing novel SA derivatives-based management approaches to control the associated plant diseases.
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- 2017
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109. Genome-Wide DNA Methylation Analysis of Hypothalamus During the Onset of Puberty in Gilts
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Xiaolong Yuan, Xiaofeng Zhou, Zitao Chen, Yingting He, Yaru Kong, Shaopan Ye, Ning Gao, Zhe Zhang, Hao Zhang, and Jiaqi Li
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genome-wide DNA methylation ,hypothalamus ,QTL of age at puberty in pigs ,onset of puberty ,gilts ,Genetics ,QH426-470 - Abstract
Although selection of the early age at puberty in gilts will make for a favorable effect on the reproductivity of sow, a large proportion of phenotypic variation in age at puberty of gilts cannot be explained by genetics. Previous studies have implicated hypothalamic DNA methylation in the onset of puberty in mammals. However, the underlying molecular mechanism regarding the regulation of the onset of puberty has remained largely unexplored in gilts. Herein, the genome-scale DNA methylation of hypothalamus was acquired, using the reduced representation bisulfite sequencing, to compare and describe the changes of DNA methylation across Pre-, In- and Post-pubertal gilts. In this study, the average methylation levels of CpGs and CpHs (where H = C, T, or A) in CpG islands- and gene-related regions were gradually decreased in hypothalamic methylomes during the pubertal transition. Comparisons of Pre- vs. In-, In- vs. Post-, and Pre- vs. Post-pubertal stage revealed that there were 85726, 92914, and 100421 differentially methylated CpGs and 5940, 14804, and 16893 differentially methylated CpHs (where H = C, T, or A) in the hypothalamic methylomes. The methylation changes of CpHs were more dynamic than that of CpGs, and methylation changes of CpGs and CpHs were likely to be, respectively, involved in the developmental processes of reproduction and the molecular processes of cellular communications in the hypothalamus. Moreover, methylation changes of CpHs were observed to overrepresent in the quantitative trait loci of age at puberty, and the biological function of these CpH methylation changes was enriched in the pancreas development in gilts. Furthermore, the mRNA levels of several differentially CpG or CpH methylated genes related to the transcription of RNA II polymerase, GnRH signaling pathway, Estrogen signaling pathway, PI3K-AKt signaling pathway, and Insulin signaling pathway, including MAX, MMP2, FGF11, IGF1R, FGF21, and GSK3B, were significantly changed across these pubertal stages in the hypothalamus. These results will help our understanding of how DNA methylation contributes to phenotypic variation of age at puberty.
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- 2019
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110. Heightened Willingness toward Pneumococcal Vaccination in the Elderly Population in Shenzhen, China: A Cross-Sectional Study during the COVID-19 Pandemic
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Minyi Zhang, Hongbiao Chen, Fei Wu, Qiushuang Li, Qihui Lin, He Cao, Xiaofeng Zhou, Zihao Gu, and Qing Chen
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23-valent pneumococcal polysaccharide vaccine ,older adults ,positive attitude ,influencing factors ,COVID-19 ,Medicine - Abstract
Background: Elderly population is considered at high risk for pneumococcal diseases. The pneumococcal vaccine coverage presents extremely low among elderly people in China. However, the serious event of COVID-19 drives interest in the pneumococcal vaccine, prompting us investigating the willingness to accept the 23-valent pneumococcal polysaccharide vaccine (PPSV23) and influencing factors among people aged over 60 years during the COVID-19 pandemic. Methods: A cross-sectional study was employed using a self-administered questionnaire in Shenzhen City of China, elaborating the willingness toward PPSV23 in the elderly persons. Binomial logistic analyses were performed to estimate the influencing factors using odds ratios (ORs) and 95% confidence interval (CI). Results: Among 15,066 respondents, 91.5% presented a positive attitude toward PPSV23. Logistic analyses suggested the influencing factors included knowledge about pneumonia (adjusted OR [aOR] 1.391, 95%CI 1.214–1.593), perception of the seriousness of pneumonia (aOR 1.437, 95%CI 1.230–1.680) and preventing way for pneumonia (aOR 1.639, 95%CI 1.440–1.865), worried about getting pneumonia (aOR 2.751, 95%CI 2.444–3.096), understanding vaccine policy (aOR 1.774, 95%CI 1.514–2.079), and influenza vaccine (aOR 3.516 and 95%CI 2.261–5.468) and PPSV23 histories (aOR 3.199, 95%CI 1.492–6.860). Conclusions: The interest surge in pneumococcal vaccine coincided with the COVID-19 outbreak, foreshadowing higher demand for pneumococcal vaccine in the near future.
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- 2021
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111. The Association of an SNP in the EXOC4 Gene and Reproductive Traits Suggests Its Use as a Breeding Marker in Pigs
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Yingting He, Xiaofeng Zhou, Rongrong Zheng, Yao Jiang, Zhixiang Yao, Xilong Wang, Zhe Zhang, Hao Zhang, Jiaqi Li, and Xiaolong Yuan
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commercial pig ,reproductive traits ,gene polymorphism ,promoter ,Veterinary medicine ,SF600-1100 ,Zoology ,QL1-991 - Abstract
In mammals, the exocyst complex component 4 (EXOC4) gene has often been reported to be involved in vesicle transport. The SNP rs81471943 (C/T) is located in the intron of porcine EXOC4, while six quantitative trait loci (QTL) within 5–10 Mb around EXOC4 are associated with ovary weight, teat number, total offspring born alive, and corpus luteum number. However, the molecular mechanisms between EXOC4 and the reproductive performance of pigs remains to be elucidated. In this study, rs81471943 was genotyped from a total of 994 Duroc sows, and the genotype and allele frequency of SNP rs81471943 (C/T) were statistically analyzed. Then, the associations between SNP rs81471943 and four reproductive traits, including number of piglets born alive (NBA), litter weight at birth (LWB), number of piglets weaned (NW), and litter weight at weaning (LWW), were determined. Sanger sequencing and PCR restriction fragment length polymorphism (PCR-RFLP) were utilized to identify the rs81471943 genotype. We found that the genotype frequency of CC was significantly higher than that of CT and TT, and CC was the most frequent genotype for NBA, LWB, NW, and LWW. Moreover, 5′-deletion and luciferase assays identified a positive transcription regulatory element in the EXOC4 promoter. After exploring the EXOC4 promoter, SNP −1781G/A linked with SNP rs81471943 (C/T) were identified by analysis of the transcription activity of the haplotypes, and SNP −1781 G/A may influence the potential binding of P53, E26 transformation specific sequence -like 1 transcription factor (ELK1), and myeloid zinc finger 1 (MZF1). These findings provide useful information for identifying a molecular marker of EXOC4-assisted selection in pig breeding.
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- 2021
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112. Temperature Prediction of Heating Furnace Based on Deep Transfer Learning
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Naiju Zhai and Xiaofeng Zhou
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deep learning ,temporal convolution network ,transfer learning ,generative adversarial networks ,furnace temperature prediction ,multiple heating zones ,Chemical technology ,TP1-1185 - Abstract
Heating temperature is very important in the process of billet production, and it directly affects the quality of billet. However, there is no direct method to measure billet temperature, so we need to accurately predict the temperature of each heating zone in the furnace in order to approximate the billet temperature. Due to the complexity of the heating process, it is difficult to accurately predict the temperature of each heating zone and each heating zone sensor datum to establish a model, which will increase the cost of calculation. To solve these two problems, a two-layer transfer learning framework based on a temporal convolution network (TL-TCN) is proposed for the first time, which transfers the knowledge learned from the source heating zone to the target heating zone. In the first layer, the TCN model is built for the source domain data, and the self-transfer learning method is used to optimize the TCN model to obtain the basic model, which improves the prediction accuracy of the source domain. In the second layer, we propose two frameworks: one is to generate the target model directly by using fine-tuning, and the other is to generate the target model by using generative adversarial networks (GAN) for domain adaption. Case studies demonstrated that the proposed TL-TCN framework achieves state-of-the-art prediction results on each dataset, and the prediction errors are significantly reduced. Consistent results applied to each dataset indicate that this framework is the most advanced method to solve the above problem under the condition of limited samples.
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- 2020
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113. Identifying Functional Genes Influencing Gossypium hirsutum Fiber Quality
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Chengguang Dong, Juan Wang, Yu Yu, Longzhen Ju, Xiaofeng Zhou, Xiaomei Ma, Gaofu Mei, Zegang Han, Zhanfeng Si, Baocheng Li, Hong Chen, and Tianzhen Zhang
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upland cotton ,fiber quality ,genome-wide association study ,SNP genotyping array ,candidate genes ,Plant culture ,SB1-1110 - Abstract
Fiber quality is an important economic index and a major breeding goal in cotton, but direct phenotypic selection is often hindered due to environmental influences and linkage with yield traits. A genome-wide association study (GWAS) is a powerful tool to identify genes associated with phenotypic traits. In this study, we identified fiber quality genes in upland cotton (Gossypium hirsutum L.) using GWAS based on a high-density CottonSNP80K array and multiple environment tests. A total of 30 and 23 significant single nucleotide polymorphisms (SNPs) associated with five fiber quality traits were identified across the 408 cotton accessions in six environments and the best linear unbiased predictions, respectively. Among these SNPs, seven loci were the same, and 128 candidate genes were predicted in a 1-Mb region (±500 kb of the peak SNP). Furthermore, two major genome regions (GR1 and GR2) associated with multiple fiber qualities in multiple environments on chromosomes A07 and A13 were identified, and within them, 22 candidate genes were annotated. Of these, 11 genes were expressed [log2(1 + FPKM)>1] in the fiber development stages (5, 10, 20, and 25 dpa) using RNA-Seq. This study provides fundamental insight relevant to identification of genes associated with fiber quality and will accelerate future efforts toward improving fiber quality of upland cotton.
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- 2019
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114. A Phosphorylation Switch on Lon Protease Regulates Bacterial Type III Secretion System in Host
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Xiaofeng Zhou, Doron Teper, Maxuel O. Andrade, Tong Zhang, Sixue Chen, Wen-Yuan Song, and Nian Wang
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Lon protease ,type III secretion system ,Xanthomonas ,Microbiology ,QR1-502 - Abstract
ABSTRACT Most pathogenic bacteria deliver virulence factors into host cytosol through type III secretion systems (T3SS) to perturb host immune responses. The expression of T3SS is often repressed in rich medium but is specifically induced in the host environment. The molecular mechanisms underlying host-specific induction of T3SS expression is not completely understood. Here we demonstrate in Xanthomonas citri that host-induced phosphorylation of the ATP-dependent protease Lon stabilizes HrpG, the master regulator of T3SS, conferring bacterial virulence. Ser/Thr/Tyr phosphoproteome analysis revealed that phosphorylation of Lon at serine 654 occurs in the citrus host. In rich medium, Lon represses T3SS by degradation of HrpG via recognition of its N terminus. Genetic and biochemical data indicate that phosphorylation at serine 654 deactivates Lon proteolytic activity and attenuates HrpG proteolysis. Substitution of alanine for Lon serine 654 resulted in repression of T3SS gene expression in the citrus host through robust degradation of HrpG and reduced bacterial virulence. Our work reveals a novel mechanism for distinct regulation of bacterial T3SS in different environments. Additionally, our data provide new insight into the role of protein posttranslational modification in the regulation of bacterial virulence. IMPORTANCE Type III secretion systems (T3SS) are an essential virulence trait of many bacterial pathogens because of their indispensable role in the delivery of virulence factors. However, expression of T3SS in the noninfection stage is energy consuming. Here, we established a model to explain the differential regulation of T3SS in host and nonhost environments. When Xanthomonas cells are grown in rich medium, the T3SS regulator HrpG is targeted by Lon protease for proteolysis. The degradation of HrpG leads to downregulated expression of HrpX and the hrp/hrc genes. When Xanthomonas cells infect the host, specific plant stimuli can be perceived and induce Lon phosphorylation at serine 654. Phosphorylation on Lon attenuates its proteolytic activity and protects HrpG from degradation. Consequently, enhanced stability of HrpG activates HrpX and turns on bacterial T3SS in the host. Our work provides a novel molecular mechanism underlying host-dependent activation of bacterial T3SS.
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- 2018
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115. A Penalized Likelihood Approach to Parameter Estimation with Integral Reliability Constraints
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Barry Smith, Steven Wang, Augustine Wong, and Xiaofeng Zhou
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confidence interval ,coverage probability ,delta method ,exponentiated exponential distribution ,penalized likelihood ,r*-formula ,Science ,Astrophysics ,QB460-466 ,Physics ,QC1-999 - Abstract
Stress-strength reliability problems arise frequently in applied statistics and related fields. Often they involve two independent and possibly small samples of measurements on strength and breakdown pressures (stress). The goal of the researcher is to use the measurements to obtain inference on reliability, which is the probability that stress will exceed strength. This paper addresses the case where reliability is expressed in terms of an integral which has no closed form solution and where the number of observed values on stress and strength is small. We find that the Lagrange approach to estimating constrained likelihood, necessary for inference, often performs poorly. We introduce a penalized likelihood method and it appears to always work well. We use third order likelihood methods to partially offset the issue of small samples. The proposed method is applied to draw inferences on reliability in stress-strength problems with independent exponentiated exponential distributions. Simulation studies are carried out to assess the accuracy of the proposed method and to compare it with some standard asymptotic methods.
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- 2015
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116. Nesfatin-1 Suppresses Cardiac L-type Ca2+ Channels Through Melanocortin Type 4 Receptor and the Novel Protein Kinase C Theta Isoform Pathway
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Jiaoqian Ying, Yuan Zhang, Shan Gong, Zhigang Chang, Xiaofeng Zhou, Hua Li, Jin Tao, and Guoqiang Zhang
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Nesfatin-1 ,L-type Ca2+ channels ,Protein kinase C ,Cardiomyocytes ,Physiology ,QP1-981 ,Biochemistry ,QD415-436 - Abstract
Background/Aims: Nesfatin-1 (NF-1), an anorexic nucleobindin-2 (NUCB2)-derived hypothalamic peptide, acts as a peripheral cardiac modulator and it can induce negative inotropic effects. However, the mechanisms underlying these effects in cardiomyocytes remain unclear. Methods: Using patch clamp, protein kinase assays, and western blot analysis, we studied the effect of NF-1 on L-type Ca2+ currents (ICa,L) and to explore the regulatory mechanisms of this effect in adult ventricular myocytes. Results: NF-1 reversibly decreased ICa,L in a dose-dependent manner. This effect was mediated by melanocortin 4 receptor (MC4-R) and was associated with a hyperpolarizing shift in the voltage-dependence of inactivation. Dialysis of cells with GDP-β-S or anti-Gβ antibody as well as pertussis toxin pretreatment abolished the inhibitory effects of NF-1 on ICa,L. Protein kinase C (PKC) antagonists abolished NF-1-induced responses, whereas inhibition of PKA activity or intracellular application of the fast Ca2+-chelator BAPTA elicited no such effects. Application of NF-1 increased membrane abundance of PKC theta isoform (PKCθ), and PKCθ inhibition abolished the decrease in ICa,L induced by NF-1. Conclusion: These data suggest that NF-1 suppresses L-type Ca2+ channels via the MC4-R that couples sequentially to the βγ subunits of Gi/o-protein and the novel PKCθ isoform in adult ventricular myocytes.
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- 2015
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117. A Novel Periplasmic Protein, VrpA, Contributes to Efficient Protein Secretion by the Type III Secretion System in Xanthomonas spp.
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Xiaofeng Zhou, Xiufang Hu, Jinyun Li, and Nian Wang
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Microbiology ,QR1-502 ,Botany ,QK1-989 - Abstract
Efficient secretion of type III effector proteins from the bacterial cytoplasm to host cell cytosol via a type III secretion system (T3SS) is crucial for virulence of plant-pathogenic bacterium. Our previous study revealed a conserved hypothetical protein, virulence-related periplasm protein A (VrpA), which was identified as a critical virulence factor for Xanthomonas citri subsp. citri. In this study, we demonstrate that mutation of vrpA compromises X. citri subsp. citri virulence and hypersensitive response induction. This deficiency is also observed in the X. campestris pv. campestris strain, suggesting a functional conservation of VrpA in Xanthomonas spp. Our study indicates that VrpA is required for efficient protein secretion via T3SS, which is supported by multiple lines of evidence. A CyaA reporter assay shows that VrpA is involved in type III effector secretion; quantitative reverse-transcription polymerase chain reaction analysis suggests that the vrpA mutant fails to activate citrus-canker-susceptible gene CsLOB1, which is transcriptionally activated by transcription activator-like effector PthA4; in vitro secretion study reveals that VrpA plays an important role in secretion of T3SS pilus, translocon, and effector proteins. Our data also indicate that VrpA in X. citri subsp. citri localizes to bacterial periplasmic space and the periplasmic localization is required for full function of VrpA and X. citri subsp. citri virulence. Protein–protein interaction studies show that VrpA physically interacts with periplasmic T3SS components HrcJ and HrcC. However, the mutation of VrpA does not affect T3SS gene expression. Additionally, VrpA is involved in X. citri subsp. citri tolerance of oxidative stress. Our data contribute to the mechanical understanding of an important periplasmic protein VrpA in Xanthomonas spp.
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- 2015
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118. Secretory microRNA-29 expression in gingival crevicular fluid during orthodontic tooth movement.
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Phimon Atsawasuwan, Paul Lazari, Yinghua Chen, Xiaofeng Zhou, Grace Viana, and Carla A Evans
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Medicine ,Science - Abstract
Secretory microRNAs (miRNAs) have been used increasingly as biomarkers for cancers, autoimmune diseases and inflammatory diseases. They are reported as being freely circulated or encapsulated in microvesicles such as exosomes. This study was performed to elucidate the presence of miRNAs with exosomes in human gingival crevicular fluid (GCF), and the expression profile of miRNA-29 during orthodontic tooth movement. Four healthy volunteer and fifteen orthodontic patients were enrolled in the study. Secretory miRNA in GCF was collected and analyzed using a bioanalyzer, realtime PCR and Western blot analysis. The expression profile of secretory miR-29 family in GCF was analyzed during the course of canine retraction for 6 weeks. The results demonstrated the presence of miRNAs in the GCF. After series of ultracentrifugation and RT-PCR array, exosome-depleted fractions and pellets were isolated and we found that secretory miRNAs were detected in both the exosome-associated fraction and the exosome-depleted supernatant fraction; however, the concentration of miRNAs was higher in the exosome-associated fraction than in the exosome-depleted fraction suggesting a close association between the secretory miRNAs and exosomes in GCF. We also demonstrated the increased expression profiles of miR-29 family during six weeks of orthodontic tooth movement in humans. Secretory miRNAs are present in GCF and secretory miRNA-29 family expression profiles increase during the tooth movement in humans. Secretory miRNA-29 in GCF could serve as potential biomarkers for periodontal remodeling.
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- 2018
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119. Lung Section Staining and Microscopy
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Xiaofeng Zhou and Bethany Moore
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Biology (General) ,QH301-705.5 - Abstract
Our protocol describes immunofluorescent staining, hematoxylin and eosin staining and Masson’s trichrome staining on lung sections.
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- 2017
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120. Adoptive Transfer of Lung Antigen Presenting Cells
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Xiaofeng Zhou and Bethany Moore
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Biology (General) ,QH301-705.5 - Abstract
Our protocol describes adoptive transfer of antigen presenting cells (APCs) isolated from the lungs by enzymatic digestion and magnetic enrichment. This protocol can be used to study APC functions and trafficking.
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- 2017
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121. P65 Targets FGFR1 to Regulate the Survival of Ovarian Granulosa Cells
- Author
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Xiaolong Yuan, Zhonghui Li, Yaru Kong, Yuyi Zhong, Yingting He, Ailing Zhang, Xiaofeng Zhou, Yao Jiang, Zhe Zhang, Hao Zhang, and Jiaqi Li
- Subjects
transcription factor p65 ,fgfr1 ,cell proliferation and apoptosis ,ovarian granulosa cells ,Cytology ,QH573-671 - Abstract
In female mammals, the abnormal apoptosis of ovarian granulosa cells (GCs) impairs follicular development and causes reproductive dysfunction. Many studies have indicated that the FGFR1 gene of the PI3K signaling pathway and the p65 subunit of the transcription factor NF-κB may regulate the proliferation and apoptosis of GCs involved in follicular development. However, little is known about whether p65 regulates the transcription of FGFR1, as well as the biological effects of p65 and FGFR1 on the survival of GCs and follicular development. In porcine follicles and GCs, we found that p65 and FGFR1 were exclusively expressed in the GCs of follicles, and the mRNA and protein levels of p65 and FGFR1 significantly increased from small to large follicles. Both p65 and FGFR1 were found to activate the PI3K signaling pathway, and the expressions of proliferation markers (PCNA and MKI67) and the anti-apoptotic gene BCL2 were significantly increased by p65 and FGFR1. Furthermore, both p65 and FGFR1 were observed to promote cell proliferation and inhibit the cell apoptosis of GCs, and p65 was confirmed to bind at the −348/−338 region of FGFR1 to positively regulate its transcription. Moreover, p65 was further found to enhance the pro-proliferation and anti-apoptotic effects of FGFR1. Taken together, p65 may target the −348/−338 region of FGFR1, promote the transcription of FGFR1, and enhance the pro-proliferation effect and anti-apoptotic effect of FGFR1 to facilitate the growth of follicles. This study will provide useful information for further investigations on the p65-mediated-FGFR1 signaling pathway during folliculogenesis in mammals.
- Published
- 2019
- Full Text
- View/download PDF
122. Paper-Based ZnS:Cu Alternating Current Electroluminescent Devices for Current Humidity Sensors with High–Linearity and Flexibility
- Author
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Yaqin He, Mengyao Zhang, Nan Zhang, Danrong Zhu, Chun Huang, Ling Kang, Xiaofeng Zhou, Menghan Hu, and Jian Zhang
- Subjects
paper-based acel ,capacitive humidity sensor ,zns:cu ,flexible ,high–linearity ,Chemical technology ,TP1-1185 - Abstract
Humidity sensors are indispensable for various electronic systems and instrumentations. To develop a new humidity sensing mechanism is the key for the next generation of sensor technology. In this work, a novel flexible paper-based current humidity sensor is proposed. The developed alternating current electroluminescent devices (ACEL) consist of the electroless plating Ni on filter paper and silver nanowires (AgNWs) as the bottom and upper electrodes, and ZnS:Cu as the phosphor layer, respectively. The proposed humidity sensor is based on ACEL with the paper substrate and the ZnS:Cu phosphor layer as the humidity sensing element. The moisture effect on the optical properties of ACELs has been studied firstly. Then, the processing parameters of the paper-based ACELs such as electroless plated bottom electrode and spin-coated phosphor layer as a function of the humidity-sensitive characteristics are investigated. The sensing mechanism of the proposed sensor has been elucidated based on the Q ~ V analysis. The sensor exhibits an excellent linearity ( R 2 = 0.99965 ) within the humidity range from 20% to 90% relative humidity (RH) and shows excellent flexibility. We also demonstrate its potential application in postharvest preservation where the EL light is used for preservation and the humidity can be monitored simultaneously through the current.
- Published
- 2019
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- View/download PDF
123. Increasing the Utilization of Transmission Lines Capacity by Quasi-Dynamic Thermal Ratings
- Author
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Fan Song, Yanling Wang, Hongbo Yan, Xiaofeng Zhou, and Zhiqiang Niu
- Subjects
transmission line ,key parameter ,quasi-dynamic thermal rating (QDR) ,operation risk ,tension loss ,time scale ,confidence level ,Technology - Abstract
The power grid is under pressure to maintain a reliable supply because of constrained budgets and environmental policies. In order to effectively make use of existing transmission lines, it is important to accurately evaluate the line capacity. Dynamic thermal rating (DTR) offers a way to increase the utilization of capacity under real-time meteorological data. However, DTR relies on a number of sensors and the cost is high. Therefore, a method of improving the utilization of capacity by quasi-dynamic thermal rating (QDR) is proposed in this paper. QDR at different confidence levels and time scales is determined through the statistical analysis of line ampacity driven by key parameters, and the key parameters is identified by control variate method. In addition, the operation risk and tension loss is evaluated. The results show that QDR can increase the utilization of line capacity and in the absence of along-line measuring devices, QDR is more accurate, reliable and cost-saving. The managers can determine the appropriate confidence level according to the operation risk and tension loss that the system can bear, and shorten the time scale with the permission of the operation and control complexity.
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- 2019
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- View/download PDF
124. Two-Dimensional Materials Based Optoelectronics
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Yu Chen, Jun Liu, Jizhou Jiang, Xiaofeng Zhou, Shuqing Chen, and Yan Luo
- Subjects
Physics ,QC1-999 - Published
- 2017
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125. Watt-Level Continuous-Wave Single-Frequency Mid-Infrared Optical Parametric Oscillator Based on MgO:PPLN at 3.68 µm
- Author
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Jiaqun Zhao, Ping Cheng, Feng Xu, Xiaofeng Zhou, Jun Tang, Yong Liu, and Guodong Wang
- Subjects
mid-infrared ,single-frequency ,optical parametric oscillator (OPO) ,MgO:PPLN crystal ,continuous-wave (CW) ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
We report a continuous-wave single-frequency singly-resonant mid-infrared optical parametric oscillator (OPO). The OPO is based on 5 mol % MgO-doped periodically poled lithium niobate (MgO:PPLN) pumped by a continuous-wave single-frequency Nd:YVO4 laser at 1064 nm. A four-mirror bow-tie ring cavity configuration is adopted. A low-finesse intracavity etalon is utilized to compress the linewidth of the resonant signal. A single-frequency idler output power higher than 1 W at 3.68 µm is obtained.
- Published
- 2018
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126. Impact of Conductor Temperature Time–Space Variation on the Power System Operational State
- Author
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Yanling Wang, Yang Mo, Mingqiang Wang, Xiaofeng Zhou, Likai Liang, and Pei Zhang
- Subjects
transmission line ,power flow ,maximum transmission power ,conductor temperature ,time–space variation ,Technology - Abstract
The conductor temperature of an overhead transmission line varies with time and space, which has an important impact on the system operation. In this paper, the conductor temperature is solved iteratively by the CIGRE heat balance equation. The time–space variation of conductor temperature of a 220-kV transmission line is analyzed using real meteorological data from Weihai. Considering the temporal distribution characteristics, the seasonal model of the conductor temperature is given. Considering the spatial distribution, the mean value model, the weight average model, and the segmentation model are established. The system power flow involving the conductor temperature is established based on the relationship between conductor temperature and transmission line parameters. Through the calculation of power flow and the analysis of the maximum power transmission capability, the accuracy of the segmentation model is verified. The results show that the conductor temperature of overhead lines has obvious time–space variation characteristics. It is necessary to consider the time–space variation when analyzing the operation state of power systems.
- Published
- 2018
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- View/download PDF
127. A Data-Gathering Scheme with Joint Routing and Compressive Sensing Based on Modified Diffusion Wavelets in Wireless Sensor Networks
- Author
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Xiangping Gu, Xiaofeng Zhou, and Yanjing Sun
- Subjects
compressive sensing ,wireless sensor networks (WSNs) ,diffusion wavelets ,ant colony algorithm ,data gathering ,Chemical technology ,TP1-1185 - Abstract
Compressive sensing (CS)-based data gathering is a promising method to reduce energy consumption in wireless sensor networks (WSNs). Traditional CS-based data-gathering approaches require a large number of sensor nodes to participate in each CS measurement task, resulting in high energy consumption, and do not guarantee load balance. In this paper, we propose a sparser analysis that depends on modified diffusion wavelets, which exploit sensor readings’ spatial correlation in WSNs. In particular, a novel data-gathering scheme with joint routing and CS is presented. A modified ant colony algorithm is adopted, where next hop node selection takes a node’s residual energy and path length into consideration simultaneously. Moreover, in order to speed up the coverage rate and avoid the local optimal of the algorithm, an improved pheromone impact factor is put forward. More importantly, theoretical proof is given that the equivalent sensing matrix generated can satisfy the restricted isometric property (RIP). The simulation results demonstrate that the modified diffusion wavelets’ sparsity affects the sensor signal and has better reconstruction performance than DFT. Furthermore, our data gathering with joint routing and CS can dramatically reduce the energy consumption of WSNs, balance the load, and prolong the network lifetime in comparison to state-of-the-art CS-based methods.
- Published
- 2018
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- View/download PDF
128. Global Expression-Based Classification of Lymph Node Metastasis and Extracapsular Spread of Oral Tongue Squamous Cell Carcinoma
- Author
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Xiaofeng Zhou, Stephane Temam, Myungshin Oh, Nisa Pungpravat, Bau-Lin Huang, Li Mao, and David T. Wong
- Subjects
Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Regional lymph node metastasis is a critical event in oral tongue squamous cell carcinoma (OTSCC) progression. The identification of biomarkers associated with the metastatic process would provide critical prognostic information to facilitate clinical decision making for improved management of OTSCC patients. Global expressional profiles were obtained for 25 primary OTSCCs, where 11 cases showed lymph node metastasis (pN+) histologically and 14 cases were nonmetastatic (pN-). Seven of pN+ cases also exhibited extracapsular spread (ECS) of metastatic nodes. Multiple expression indices were used to generate signature gene sets for pN+/- and ECS+/- cases. Selected genes from signature gene sets were validated using quantitative reverse transcription-polymerase chain reaction (qRT-PCR). The classification powers of these genes were then evaluated using a logistic model, receiver operating characteristic curve analysis, leave-oneout cross-validation. qRT-PCR validation data showed that differences at RNA levels are either statistically significant (P
- Published
- 2006
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129. Candidate Tumor-Suppressor Gene DLEC1 Is Frequently Downregulated by Promoter Hypermethylation and Histone Hypoacetylation in Human Epithelial Ovarian Cancer
- Author
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Joseph Kwong, Ji-Young Lee, Kwong-Kwok Wong, Xiaofeng Zhou, David T.W. Wong, Kwok-Wai Lo, William R. Welch, Ross S. Berkowitz, and Samuel C. Mok
- Subjects
DLEC1 ,chromosome 3p22.3 ,promoter hypermethylation ,histone hypoacetylation ,epithelial ovarian cancer ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Suppression of ovarian tumor growth by chromosome 3p was demonstrated in a previous study. Deleted in Lung and Esophageal Cancer 1 (DLEC1) on 3p22.3 is a candidate tumor suppressor in lung, esophageal, and renal cancers. The potential involvement of DLEC1 in epithelial ovarian cancer remains unknown. In the present study, DLEC1 downregulation was found in ovarian cancer cell lines and primary ovarian tumors. Focus-expressed DLEC1 in two ovarian cancer cell lines resulted in 41% to 52% inhibition of colony formation. No chromosomal loss of chromosome 3p22.3 in any ovarian cancer cell line or tissue was found. Promoter hypermethylation of DLEC1 was detected in ovarian cancer cell lines with reduced DLEC1 transcripts, whereas methylation was not detected in normal ovarian epithelium and DLEC1-expressing ovarian cancer cell lines. Treatment with demethylating agent enhanced DLEC1 expression in 90% (9 of 10) of ovarian cancer cell lines. DLEC1 promoter methylation was examined in 13 high-grade ovarian tumor tissues with DLEC1 downregulation, in which 54% of the tumors showed DLEC1 methylation. In addition, 80% of ovarian cancer cell lines significantly upregulated DLEC1 transcripts after histone deacetylase inhibitor treatment. Therefore, our results suggested that DLEC1 suppressed the growth of ovarian cancer cells and that its downregulation was closely associated with promoter hypermethylation and histone hypoacetylation.
- Published
- 2006
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130. A BIL Population Derived from G. hirsutum and G. barbadense Provides a Resource for Cotton Genetics and Breeding.
- Author
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Xinhui Nie, Jianli Tu, Bin Wang, Xiaofeng Zhou, and Zhongxu Lin
- Subjects
Medicine ,Science - Abstract
To provide a resource for cotton genetics and breeding, an interspecific hybridization between Gossypium hirsutum cv. Emian22 and G. barbadense acc. 3-79 was made. A population of 54 BILs (backcross inbred lines, BC1F8) was developed with the aim of transferring G. barbadense genes into G. hirsutum in order to genetically analyze these genes' function in a G. hirsutum background and create new germplasms for breeding. Preliminary investigation of the morphological traits showed that the BILs had diverse variations in plant architecture, seed size, and fuzz color; the related traits of yield and fiber quality evaluated in 4 environments also showed abundant phenotypic variation. In order to explore the molecular diversity of the BIL population, 446 SSR markers selected at an average genetic distance of 10 cM from our interspecific linkage map were used to genotype the BIL population. A total of 393 polymorphic loci accounting for 84.4% MAF (major allele frequency) > 0.05 and 922 allele loci were detected, and the Shannon diversity index (I) was 0.417 per locus. The average introgression segment length was 16.24 cM, and an average of 29.53 segments were introgressed in each BIL line with an average background recovery of 79.8%. QTL mapping revealed 58 QTL associated with fiber quality and yield traits, and 47 favored alleles derived from the donor parent were discovered. This study demonstrated that the interspecific BIL population was enriched with much phenotypic and molecular variation which could be a resource for cotton genetics and breeding.
- Published
- 2015
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- View/download PDF
131. p53 Status correlates with the risk of recurrence in non-muscle invasive bladder cancers treated with Bacillus Calmette-Guérin: a meta-analysis.
- Author
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Xiaofeng Zhou, Guan Zhang, and Ye Tian
- Subjects
Medicine ,Science - Abstract
Published studies have yielded inconsistent results on the relationship between p53 status and the prognosis of non-muscle invasive bladder cancer (NMIBC) treated with Bacillus Calmette-Guérin (BCG) intravesical therapy. Therefore, we performed a meta-analysis to evaluate the prognostic value of p53 in NMIBC treated with BCG.We systematically searched for relevant literature in PubMed, EMBASE, CNKI, and Chinese Wanfang databases. Hazard ratios (HRs) with 95% confidence intervals (CIs) were combined as the effect size (ES) across studies for recurrence-free survival (RFS) and progression-free survival (PFS).A total of 11 studies, consisting of 1,049 participants, met the criteria. Overall, there was no clear relationship between p53 status and RFS or PFS for NMIBC patients treated with BCG (HR: 1.40, 95% CI: 0.91-2.16; HR: 1.37, 95% CI: 0.90-2.09, respectively). Obvious heterogeneity was observed across the studies (I2 = 69.5%, P = 0.001; I2 = 44.7%, P = 0.081, respectively). In stratified analysis by region, p53 overexpression was a predictor of poor RFS in Asian populations (HR: 1.57, 95% CI: 1.08-2.27). In addition, after excluding the studies that possibly contributed to the heterogeneity by the Galbraith plot, the overall association for RFS became statistically significant (HR: 1.38 95% CI: 1.08-1.77) without evidence of heterogeneity (I2 = 0.0%, P = 0.499).This meta-analysis suggests that p53 overexpression in NMIBC patients treated with BCG may be associated with RFS, especially in Asian populations. Because of the heterogeneity and other limitations, further studies with rigid criteria and large populations are still warranted to confirm our findings.
- Published
- 2015
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132. CodeFuse: Multimodal Code Search Model with Fine-Grained Attention Alignment.
- Author
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Shengnan Zhang, Shuiyan Li, Rongzhi Qi, and Xiaofeng Zhou
- Published
- 2024
- Full Text
- View/download PDF
133. Fundamental Capabilities of Large Language Models and their Applications in Domain Scenarios: A Survey.
- Author
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Jiawei Li, Yizhe Yang, Yu Bai 0018, Xiaofeng Zhou, Yinghao Li, Huashan Sun, Yuhang Liu, Xingpeng Si, Yuhao Ye, Yixiao Wu, Yiguan Lin, Bin Xu, Ren Bowen, Chong Feng 0001, Yang Gao 0016, and Heyan Huang
- Published
- 2024
- Full Text
- View/download PDF
134. Abnormal Vibration Fault Diagnosis of Reducer Based on Bayesian Network.
- Author
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Xin Tan, Jingshu Zhong, Xiaofeng Zhou, Zixin Wang, Anye Zhou, and Yu Zheng
- Published
- 2024
- Full Text
- View/download PDF
135. MicroRNA Deregulations in Head and Neck Squamous Cell Carcinomas
- Author
-
Muzaffar Shah-Khan, Yang Lu, Anxun Wang, Yi Jin, Robert J. Cabay, Dan Chen, and Xiaofeng Zhou
- Subjects
squamous cell carcinoma of the head and neck ,microRNA ,carcinogenesis tests. ,Dentistry ,RK1-715 - Abstract
Objectives: Head and neck/oral cancer, predominantly head and neck squamous cell carcinoma (HNSCC), is the sixth most common cancer in the world. While substantial advances have been made to define the genomic alterations associated with head and neck/oral cancer, most studies are focused on protein coding genes. The aim of this article is to review the current literature on identified genomic aberrations of non-coding genes (e.g., microRNA) in head and neck/oral cancer (HNOC), and their contribution to the initiation and progression of HNOC. Material and Methods: A comprehensive review of the available literature relevant to microRNA deregulation in HNSCC/HNOC, was undertaken using PubMed, Medline, Scholar Google and Scopus. Keywords for the search were: microRNA and oral cancer, microRNA and squamous cell carcinoma, microRNA deregulation and oral cancer, microRNA and carcinogenesis in the head and neck/oral cavity. Only full length articles in the English language were included. Results: We recently identified a panel of microRNA deregulations that were consistently observed in HNSCC [Chen et al., Oral Oncol. 2012;48(8):686-91], including 7 consistently up-regulated microRNAs (miR-21, miR-7, miR-155, miR-130b, miR-223, miR-34b), and 4 consistently down-regulated microRNAs (miR-100, miR-99a, miR-125b, miR-375). In this review, we will first provide an overview on microRNA and HNSCC. We will then provide a comprehensive review on the roles of microRNA deregulations in HNSCC. The functional significance of the identified HNSCC-associated microRNAs and a number of other relevant microRNAs (e.g., miR-138, miR-98, miR-137, miR-193a and miR-218) will be discussed in detail. Conclusions: Based on current literature, microRNA deregulation plays a major role in head and neck/oral cancer.
- Published
- 2013
- Full Text
- View/download PDF
136. MicroRNA-99 family members suppress Homeobox A1 expression in epithelial cells.
- Author
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Dan Chen, Zujian Chen, Yi Jin, Dragan Dragas, Leitao Zhang, Barima S Adjei, Anxun Wang, Yang Dai, and Xiaofeng Zhou
- Subjects
Medicine ,Science - Abstract
The miR-99 family is one of the evolutionarily most ancient microRNA families, and it plays a critical role in developmental timing and the maintenance of tissue identity. Recent studies, including reports from our group, suggested that the miR-99 family regulates various physiological processes in adult tissues, such as dermal wound healing, and a number of disease processes, including cancer. By combining 5 independent genome-wide expression profiling experiments, we identified a panel of 266 unique transcripts that were down-regulated in epithelial cells transfected with miR-99 family members. A comprehensive bioinformatics analysis using 12 different sequence-based microRNA target prediction algorithms revealed that 81 out of these 266 down-regulated transcripts are potential direct targets for the miR-99 family. Confirmation experiments and functional analyses were performed to further assess 6 selected miR-99 target genes, including mammalian Target of rapamycin (mTOR), Homeobox A1 (HOXA1), CTD small phosphatase-like (CTDSPL), N-myristoyltransferase 1 (NMT1), Transmembrane protein 30A (TMEM30A), and SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 (SMARCA5). HOXA1 is a known proto-oncogene, and it also plays an important role in embryonic development. The direct targeting of the miR-99 family to two candidate binding sequences located in the HOXA1 mRNA was confirmed using a luciferase reporter gene assay and a ribonucleoprotein-immunoprecipitation (RIP-IP) assay. Ectopic transfection of miR-99 family reduced the expression of HOXA1, which, in consequence, down-regulated the expression of its downstream gene (i.e., Bcl-2) and led to reduced proliferation and cell migration, as well as enhanced apoptosis. In summary, we identified a number of high-confidence miR-99 family target genes, including proto-oncogene HOXA1, which may play an important role in regulating epithelial cell proliferation and migration during physiological disease processes, such as dermal wound healing and tumorigenesis.
- Published
- 2013
- Full Text
- View/download PDF
137. MicroRNA-99 family targets AKT/mTOR signaling pathway in dermal wound healing.
- Author
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Yi Jin, Stéphanie D Tymen, Dan Chen, Zong Juan Fang, Yan Zhao, Dragan Dragas, Yang Dai, Phillip T Marucha, and Xiaofeng Zhou
- Subjects
Medicine ,Science - Abstract
Recent studies suggest that microRNAs play important roles in dermal wound healing and microRNA deregulation has been linked with impaired wound repair. Here, using a mouse experimental wound healing model, we identified a panel of 63 differentially expressed microRNAs during dermal wound healing, including members of miR-99 family (miR-99a, miR-99b, miR-100). We further demonstrated that miR-99 family members regulate cell proliferation, cell migration, and AKT/mTOR signaling. Combined experimental and bioinformatics analyses revealed that miR-99 family members regulate AKT/mTOR signaling by targeting multiple genes, including known target genes (e.g., IGF1R, mTOR) and a new target (AKT1). The effects of miR-99 family members on the expression of IGF1R, mTOR and AKT1 were validated at both the mRNA and protein levels. Two adjacent miR-99 family targeting sites were identified in the 3'-UTR of the AKT1 mRNA. The direct interaction of miR-100 with these targeting sites was confirmed using luciferase reporter assays. The microRNA-100-directed recruitment of AKT1 mRNA to the RNAi-induced silencing complex (RISC) was confirmed by a ribonucleoprotein-IP assay. In summary, we identified a panel of differentially expressed microRNAs which may play important roles in wound healing. We provide evidence that miR-99 family members contribute to wound healing by regulating the AKT/mTOR signaling.
- Published
- 2013
- Full Text
- View/download PDF
138. Review of MicroRNA Deregulation in Oral Cancer. Part I
- Author
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Antonia Kolokythas, Michael Miloro, and Xiaofeng Zhou
- Subjects
oral cancer ,oral neoplasms ,head and neck cancer ,head ,neck neoplasms ,microRNA ,review ,Dentistry ,RK1-715 - Abstract
Objectives: Oral cancer is the sixth most common malignancy worldwide. Cancer development and progression requires inactivation of tumour suppressor genes and activation of proto-oncogenes. Expression of these genes is in part dependant on RNA and microRNA based mechanisms. MicroRNAs are essential regulators of diverse cellular processes including proliferation, differentiation, apoptosis, survival, motility, invasion and morphogenesis. Several microRNAs have been found to be aberrantly expressed in various cancers including oral cancer.Material and Methods: A comprehensive review of the available literature from 2000 to 2011 relevant to microRNA deregulation in oral cancer was undertaken using PubMed, Medline, Scholar Google and Scopus. Keywords for the search were: microRNA and oral cancer, microRNA and squamous cell carcinoma, microRNA deregulation. Only full length articles in the English language were included. Strengths and limitations of each study are presented in this review.Results: Several studies were identified that investigated microRNA alternations in the head and neck/oral cavity cancers. Significant progress has been made in identification of microRNA deregulation in these cancers. It has been evident that several microRNAs were found to be deregulated specifically in oral cavity cancers. Among these, several microRNAs have been functionally validated and their potential target genes have been identified.Conclusions: These findings on microRNA deregulation in cancer further enhance our understanding of the disease progression, response to treatment and may assist with future development of targeted therapy.
- Published
- 2011
139. Review of MicroRNA Proposed Target Genes in Oral Cancer. Part II
- Author
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Antonia Kolokythas, Michael Miloro, and Xiaofeng Zhou
- Subjects
oral cancer ,head and neck cancer ,microRNA ,gene targeting ,carcinogenesis tests ,Dentistry ,RK1-715 - Abstract
Objectives: Cancer is the product of alterations in oncogenes, tumour suppressor genes and most recently microRNA genes not as a single event or single change but rather as a multistep process. The role of microRNA genes in carcinogenesis is recently explored and appears to be an early event in the pathogenesis of this as well as other disease processes and occurs via gene regulation by their own products, the microRNAs.Material and Methods: A review of the available literature from 2000 to 2011 regarding the potential roles assumed by microRNAs in oral cancer was undertaken using PubMed, Medline, Scholar Google and Scopus. Keywords for the search were: microRNA and oral cancer and target genes, microRNA deregulation and oral cancer, microRNA and carcinogenesis in the head and neck/oral cavity. English language full length articles were reviewed.Results: Several microRNAs deregulated in oral cancer have been functionally validated and their exact target genes have been identified. Furthermore the carcinogenesis pathways impacted by these alterations has been proposed for some of these microRNAs.Conclusions: The expanding knowledge of specific roles of certain microRNAs is further contributing to our understanding of the complexity of tumour progression and behaviour. Consideration of this information and incorporation into treatment modalities through targeted therapy could potentially enhance our abilities to improve outcome especially when other established therapies have failed.
- Published
- 2011
140. 4,4-Difluoro-1,3,5,7-tetramethyl-8-pentafluorophenyl-4-bora-3a,4a-diaza-s-indacene
- Author
-
XiaoFeng Zhou
- Subjects
Crystallography ,QD901-999 - Abstract
In the title dye compound, C19H14BF7N2, the boron–dipyrromethene core lies on a crystallographic mirror plane which bisects the BF2 and pentafluorophenyl groups. The dihedral angle between the pentafluorophenyl ring and the tricyclic system is thus 90° by symmetry. The sp3-hybridized B atom has a slightly distorted tetrahedral coordination.
- Published
- 2010
- Full Text
- View/download PDF
141. 6,8-Di-tert-butyl-3-(4-nitrophenyl)-2H-chromen-2-one
- Author
-
XiaoFeng Zhou
- Subjects
Crystallography ,QD901-999 - Abstract
The title compound, C23H25NO4, was synthesized by the reaction of 2-(4-nitrophenyl)acetonitrile and 3,5-di-tert-butyl-2-hydroxybenzaldehyde. The dihedral angle formed by the benzene ring and the mean plane through the benzopyranone ring system is 35.57 (5)°. The nitro group is almost coplanar with the attached benzene ring [dihedral angle = 5.19 (15)°]. The crystal packing is stabilized by an intermolecular C—H...O hydrogen-bond interaction.
- Published
- 2010
- Full Text
- View/download PDF
142. AISM: An Adaptable Image Steganography Model With User Customization.
- Author
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Bobiao Guo, Ping Ping, Siqi Zhou, Olano Teah Bloh, Feng Xu 0008, and Xiaofeng Zhou
- Published
- 2024
- Full Text
- View/download PDF
143. FADO: Floorplan-Aware Directive Optimization Based on Synthesis and Analytical Models for High-Level Synthesis Designs on Multi-Die FPGAs.
- Author
-
Linfeng Du, Tingyuan Liang, Xiaofeng Zhou, Jinming Ge, Shangkun Li, Sharad Sinha, Jieru Zhao, Zhiyao Xie, and Wei Zhang 0012
- Published
- 2024
- Full Text
- View/download PDF
144. Design and Evaluation of a Miniaturized Non-Resonant Photoacoustic CO2 Gas Sensor with Integrated Electronics.
- Author
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Nan Zhang, Ananya Srivastava, Xiaolin Li, Yuanchun Li, Zhenyue Zhou, Achim Bittner, Xiaofeng Zhou, and Alfons Dehe
- Published
- 2023
- Full Text
- View/download PDF
145. A Digital Twin Monitoring System for Belt Conveyor.
- Author
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Jingshu Zhong, Zixin Wang, Xiangyu Bao, Xiaofeng Zhou, Dianliang Wu, and Yu Zheng 0012
- Published
- 2023
- Full Text
- View/download PDF
146. Time Series Prediction Method of Industrial Process With Limited Data Based on Transfer Learning.
- Author
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Xiaofeng Zhou, Naiju Zhai, Shuai Li 0003, and Haibo Shi
- Published
- 2023
- Full Text
- View/download PDF
147. Seformer: a long sequence time-series forecasting model based on binary position encoding and information transfer regularization.
- Author
-
Pengyu Zeng, Guoliang Hu, Xiaofeng Zhou, Shuai Li 0003, and Pengjie Liu
- Published
- 2023
- Full Text
- View/download PDF
148. Learning Latent ODEs With Graph RNN for Multi-Channel Time Series Forecasting.
- Author
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Fei Zhan, Xiaofeng Zhou, Shuai Li 0003, Dongni Jia, and Hong Song
- Published
- 2023
- Full Text
- View/download PDF
149. Soft Sensor Model for Billet Temperature in Multiple Heating Furnaces Based on Transfer Learning.
- Author
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Naiju Zhai, Xiaofeng Zhou, Shuai Li 0003, and Haibo Shi
- Published
- 2023
- Full Text
- View/download PDF
150. An Automatic Pavement Crack Detection System with FocusCrack Dataset.
- Author
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Xinyun Yan, Shang Shi, Xiaohu Xu, Zhengran He, Xiaofeng Zhou, Chishe Wang, and Zhiyi Lu
- Published
- 2022
- Full Text
- View/download PDF
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