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Horizontal gene transfer (HGT) is a major process by which genes are transferred between microbes in the rhizosphere. However, examining HGT remains challenging due to the complexity of mimicking conditions within the rhizosphere. Fabricated ecosystems (EcoFABs) have been used to investigate several complex processes in plant-associated environments. Here we show that EcoFABs are efficient tools to examine and measure HGT frequency in the rhizosphere. We provide the first demonstration of gene transfer via a triparental conjugation system in the Brachypodium distachyon rhizosphere in an EcoFAB using Pseudomonas putida KT2440 as both donor and recipient bacterial strain with the donor containing a mobilizable and non-self-transmissible plasmid. We observed that the frequency of plasmid transfer in the rhizosphere is potentially dependent on the plant developmental stage and the composition and amount of root exudates. The frequency of plasmid transfer also increased with higher numbers of donor cells. We demonstrate the transfer of plasmid from P. putida to another B. distachyon root colonizer, Burkholderia sp. OAS925, showing HGT within a rhizosphere microbial community. Environmental stresses also influenced the rate and efficiency of HGT in the rhizosphere between different species and genera. This study provides a robust workflow to evaluate transfer of engineered plasmids in the rhizosphere when such plasmids are potentially introduced in a field or other plant-associated environments.IMPORTANCEWe report the use of EcoFABs to investigate the HGT process in a rhizosphere environment. It highlights the potential of EcoFABs in recapitulating the dynamic rhizosphere conditions as well as their versatility in studying plant-microbe interactions. This study also emphasizes the importance of studying the parameters impacting the HGT frequency. Several factors such as plant developmental stages, nutrient conditions, number of donor cells, and environmental stresses influence gene transfer within the rhizosphere microbial community. This study paves the way for future investigations into understanding the fate and movement of engineered plasmids in a field environment., Competing Interests: The authors declare no conflict of interest.

Prokaryotic maintenance respiration and associated metabolic activities constitute a considerable proportion of the total respiration of carbon to CO2 in the ocean's mixed layer. However, seasonal influences on prokaryotic maintenance activities in terms of morphological and metabolic adaptations at low (winter) and high productivity (summer) are still unclear. To address this, we examined the natural prokaryotic communities at the mesocosm scale to analyse the differences in their morphological features and gene expression at low and high maintenance respiration, experimentally manipulated with the specific growth rate. Here, we showed that morphological features including membrane blebbing, membrane vesicles, and cell‒cell connections occurred under high productivity. Metabolic adaptations associated with maintenance activities were observed under low productivity. Several Kyoto Encyclopedia of Genes and Genomes categories related to signal transduction, energy metabolism, and translational machinery supported maintenance activities under simulated winter conditions. Differential abundances of genes related to transporters, osmoregulation, nitrogen metabolism, ribosome biogenesis, and cold stress were observed. Our results demonstrate how specific growth rate in different seasons can influence resource allocation at the levels of morphological features and metabolic adaptations. This motivates further study of morphological features and their ecological role during high productivity, while investigations of metabolic adaptations during low productivity can advance our knowledge about maintenance activities., (© The Author(s) 2024. Published by Oxford University Press on behalf of FEMS.)

Harmful algal blooms (HABs) are a significant threat to freshwater ecosystems, and monitoring for changes in biomass is therefore important. Fluorescence in-situ sensors enable rapid and high frequency real-time data collection and have been widely used to determine chlorophyll- a (Chla) concentrations that are used as an indicator of the total algal biomass. However, conversion of fluorescence to equivalent Chla concentrations is often complicated due to biofouling, phytoplankton composition and the type of equipment used. Here, we validated measurements from 24 Chla and 12 phycocyanin (cyanobacteria indicator) fluorescence in-situ sensors (Cyclops-7F, Turner Designs) against spectrophotometrically (in-vitro) determined Chla and tested a data-cleaning procedure for eliminating data errors and impacts of non-photochemical quenching. The test was done across a range of freshwater plankton communities in 24 mesocosms (i.e. experimental tanks) with a 2x3 (high and low nutrient x ambient, IPCC-A2 and IPCC-A2+50% temperature scenarios) factorial design. For most mesocosms (tanks), we found accurate (r 2 ≥ 0.7) calibration of in-situ Chla fluorescence data using simple linear regression. An exception was tanks with high in-situ phycocyanin fluorescence, for which multiple regressions were employed, which increased the explained variance by >16%. Another exception was the low Chla concentration tanks (r 2 < 0.3). Our results also show that the high frequency in-situ fluorescence data recorded the timing of sudden Chla variations, while less frequent in-vitro sampling sometimes missed these or, when recorded, the duration of changes was inaccurately determined. Fluorescence in-situ sensors are particularly useful to detect and quantify sudden phytoplankton biomass variations through high frequency measurements, especially when using appropriate data-cleaning methods and accounting for factors that can impact the fluorescence readings. Nevertheless, corroborating these data with in-vitro Chla assessments would provide additional validation for the early warnings provided by sensor data., Competing Interests: No competing interests were disclosed., (Copyright: © 2024 Levi EE et al.)

Aquatic gastropods are important integral components of the macroinvertebrate community in freshwater ecosystems and play critical roles in freshwater ecosystems by contributing to biodiversity, nutrient cycling, and water quality. However, the variation of aquatic gastropods’ community structure under the combined effects of warming and nutrient enrichment remains largely unknown. To investigate this question, we performed an outdoor mesocosm experiment examining the interaction of warming (a 4.5 °C increase in mean temperature above ambient conditions) and nutrient enrichment (phosphorus addition) on the aquatic gastropods’ community and dominant population (Bellamya aeruginosa). We analyzed the changes in community dynamics (abundance and biomass), size structure, and stoichiometric traits (only B. aeruginosa). Results showed that phosphorus enrichment alone had a positive effect on the total abundance and biomass of gastropods, as well as the abundance and biomass of B. aeruginosa. Warming alone only produced a positive effect on total abundance. However, the combined effects of warming and phosphorus enrichment negatively affected the biomass and abundance of the whole gastropod community and the dominant gastropod population. The body mass of B. aeruginosa increased because of warming, whereas the body mass of the gastropod community negatively responded to warming. Phosphorus enrichment alone had no remarkable effects on body mass. The combined effects of warming and phosphorus enrichment negatively affected the whole community’s body mass but had no substantial effect on the body mass of B. aeruginosa. For body stoichiometric traits, warming or phosphorus enrichment alone produced positive effects on the nitrogen and phosphorus contents of B. aeruginosa. The combined effects caused adverse effects on the contents of the two elements. The effect of warming alone only decreased the ratio of nitrogen to phosphorus. Results suggested that the response levels in size structure between the gastropod community and the dominant population differed remarkably. Composition species shift was the main cause of the decrease in aquatic gastropods’ community size structure. The shift in species composition at the whole gastropod community level caused by warming and phosphorus enrichment may result in more complex and unpredicted consequences through cascade effects on the structure and function of freshwater ecosystems.

Current methods of root sampling typically only obtain small or incomplete sections of root systems and do not capture their true complexity. To facilitate the visualization and analysis of full-sized plant root systems in 3-dimensions, we developed customized mesocosm growth containers. While highly scalable, the design presented here uses an internal volume of 45 ft3 (1.27 m3), suitable for large crop and bioenergy grass root systems to grow largely unconstrained. Furthermore, they allow for the excavation and preservation of 3-dimensional root system architecture (RSA), and facilitate the collection of time-resolved subterranean environmental data. Sensor arrays monitoring matric potential, temperature and CO2 levels are buried in a grid formation at various depths to assess environmental fluxes at regular intervals. Methods of 3D data visualization of fluxes were developed to allow for comparison with root system architectural traits. Following harvest, the recovered root system can be digitally reconstructed in 3D through photogrammetry, which is an inexpensive method requiring only an appropriate studio space and a digital camera. We developed a pipeline to extract features from the 3D point clouds, or from derived skeletons that include point cloud voxel number as a proxy for biomass, total root system length, volume, depth, convex hull volume and solidity as a function of depth. Ground-truthing these features with biomass measurements from manually dissected root systems showed a high correlation. We evaluated switchgrass, maize, and sorghum root systems to highlight the capability for species wide comparisons. We focused on two switchgrass ecotypes, upland (VS16) and lowland (WBC3), in identical environments to demonstrate widely different root system architectures that may be indicative of core differences in their rhizoeconomic foraging strategies. Finally, we imposed a strong physiological water stress and manipulated the growth medium to demonstrate whole root system plasticity in response to environmental stimuli. Hence, these new “3D Root Mesocosms” and accompanying computational analysis provides a new paradigm for study of mature crop systems and the environmental fluxes that shape them.

Climate change is expected to alter the intensity and frequency of upwelling in high productive coastal regions, thus impacting nutrient fluxes, primary productivity and consequently carbon cycling. However, it is unknown how these changes will impact the planktonic (phytoplankton and bacteria) community structure, which affects community respiration (CR) and hence the carbon available for sequestration or transfer to upper trophic levels. Here we present results from a 37-day mesocosm experiment where we examined the response of CR to nutrient additions by simulating upwelling events at different intensities (low, medium, high and extreme) and modes (singular and recurring additions). We also analysed the potential contribution of different plankton size classes and functional groups to CR. The trend in accumulated CR with respect to nutrient fertilisation (total nitrogen added during the experiment) was linear in the two modes. Microplankton (mostly diatoms) and nanoplankton (small flagellates) dominated under extreme upwelling intensities and high CR in both singular and recurring upwelling modes, explaining >65% of the observed variability in CR. In contrast, prokaryotic picoplankton (heterotrophic bacteria and autotrophic cyanobacteria) explained

Brown algae from genus Cystoseira s.l. form dense underwater forests that represent the most productive areas in the Mediterranean Sea. Due to the combined effects of global and local stressors such as climate change, urbanization, and herbivore outbreaks, there has been a severe decline in brown algal forests in the Mediterranean Sea. Natural recovery of depleted sites is unlikely due to the low dispersal capacity of these species, and efficient techniques to restore such habitats are needed. In this context, the aims of our study were (1) to improve and simplify the current ex situ laboratory protocol for the cultivation of Gongolaria barbata by testing the feasibility of some cost-effective and time-efficient techniques on two donor sites of G. barbata and (2) to evaluate the survival and growth of young thalli during the laboratory phase and during the most critical five months after out-planting. Specifically, the following ex situ cultivation methods were tested: (A) cultivation on clay tiles in mesocosms with culture water prepared by three different procedures (a) filtered seawater with a 0.22 μm filter membrane, (b) filtered seawater with a 0.7 μm filter membrane (GF), and (c) UV-sterilized water, and (B) cultivation on clay tiles in open laboratory systems. After two weeks, all thalli were fixed to plastic lantern net baskets suspended at a depth of 2 m in the coastal sea (hybrid method), and the algal success was monitored in relation to the different donor sites and cultivation protocol. The satisfactory results of this study indicate that UV-sterilized water is suitable for the cultivation of G. barbata in mesocosm, which significantly reduces the cost of the laboratory phase. This opens the possibility of numerous and frequent algal cultures during the reproductive period of the species. Additionally, if the young thalli remain in the lantern net baskets for an extended period of several months, they can grow significantly in the marine environment without being exposed to pressure from herbivorous fish.

The varied and wide-reaching impacts of climate change are occurring across heterogeneous landscapes characterized by a broad diversity of soil types. Despite the known importance of soils in mediating biogeochemical nutrient cycling, there is little experimental evidence of how soil characteristics may shape aqueous nutrient losses from forest ecosystems under climate change. Our objective was to clarify how soil characteristics modify the impact of climate changes on carbon and nutrient leaching losses in temperate forests. We therefore conducted a field-based mesocosm experiment with replicated warming and snow exclusion treatments on two soils in large (2.4 m diameter), in-field forest sapling mesocosms. We found that nutrient loss responses to warming and snow exclusion treatments frequently varied substantially by soil type. For example, warming and snow exclusion increased nitrogen (N) losses on fine textured soils by up to four times versus controls, but these treatments had no impact on coarse textured soils. Generally, the coarse textured soil, with its lower soil-water holding capacity, had higher nutrient losses (e.g., 12–17 times more total N loss from coarse than fine textured soils), except in the case of phosphate, which had consistently higher losses (23–58%) from the finer textured soil. Furthermore, the mitigation of nutrient loss by increasing sapling biomass varied by soil type and nutrient. Our results suggest that potentially large biogeochemical responses to climate change are strongly mediated by soil characteristics, providing further evidence of the need to consider soil properties in Earth system models for improving nutrient cycling and climate projections. [ABSTRACT FROM AUTHOR]

Background: Nymphaeid macrophytes, rooting in the sediment of water bodies and characterized by floating leaves, play an important role in wetland ecosystems. The present research deals with the effects of limited space, limited nutrient availability, water temperature and an unexpected inundation on the production, turnover and plasticity of floating leaves of the globally widespread species Nymphoides peltata (Fringed waterlily). Methods: The effects of these environmental conditions were studied in two plots in outdoor concrete tanks (CT1, CT2, mesocosms simulating occurrence in small ponds) and in two plots in the floodplain oxbow lake Bemmelse Strang (BS1, BS2). Plot CT1 was situated in a stand coexisting with helophytes, plot CT2 in a monospecific stand, plot BS1 in the center and plot BS2 at the open water border of a monospecific stand. All floating leaf blades within the plots were marked at appearance at the water surface and subsequently length, width and damage of each leaf and maximum and minimum water temperatures were measured bi-weekly. Area and biomass of leaf blades were calculated based on leaf length and width and were used to calculate turnover rates and production. Results: The growth period started in May and ended mid-October with continuous production of floating leaves during nearly the whole vegetation period. In the tanks the water level was very stable, but the lake underwent an inundation by river water, causing a sudden loss of existing leaves. Considering environmental conditions and based on the assumed ranking from low to high nutrient availability, the ranking of the plots was CT1, CT2, BS1, BS2. This order was found for maximum leaf life span and maximum leaf length, and the reverse order was found for number of leaves, new leaves per day and duration of the vegetation period. Turnover rates appeared to be relatively similar for plots CT1, CT2 and BS1, but for the deeper border plot BS2 lower ratios were found. These results indicate that increased enclosure with expected nutrient limitation causes (1) the production of high numbers of small leaves with larger totals for leaf area and biomass, (2) a shift towards increased sexual reproduction by the production of more flowering stem leaves. [ABSTRACT FROM AUTHOR]

Constructed, mitigation wetlands in the midwestern United States are frequently dominated by a Typha spp. monoculture and their hydrologies are often determined by adjustable control structures. Wetlands provide habitat for multiple macroinvertebrate species, which in turn provide food for other organisms inhabiting the wetlands, such as waterfowl. This study examined the impacts of plant diversity and manipulated hydrology on macroinvertebrate communities. Forty 1-m2 wetland mesocosms were either planted with a monoculture of Typha spp. or with a more diverse plant community of Schoenoplectus tabernaemontani, Juncus effusus, and Sparganium eurycarpum. They were also assigned to one of four hydrologic regimes: steady state, pulsing, deep spring/shallow fall, and shallow spring/deep summer. After one year, macroinvertebrates were sampled in the mesocosms. Mesocosms with deep spring hydrologies were found to have greater taxon diversity than those with other hydrologies, but Chironomidae biomass was the lowest under the deep spring hydrology. Culicidae and Chironomidae were found in higher numbers in mixed vegetation than in Typha spp. Taxon richness and Chironomid biomass were significantly higher in mixed vegetation mesocosms than in Typha spp. monocultures. Results suggest vegetation diversity and hydrological regimes impact macroinvertebrate communities, with potential implications for constructed wetland design and management. [ABSTRACT FROM AUTHOR]

Understanding the effect of ground types on foraging movements of ground‐dwelling arthropods is a key step to managing their spatial distribution as required for successful conservation biological control. Indeed, fine movements at the centimeter scale can strongly influence the foraging ability of pest predators. However, because radio frequency identification or harmonic tracking techniques are not yet suitable for small species and video tracking focuses on uniform and light backgrounds, foraging movements have rarely been studied in relation to ground types. We present a method to track a ground‐dwelling arthropod (the earwig Euborellia caraibea) at night, walking on two contrasted ground types: bare soil and soil partly covered with a stratum of banana plant residues allowing individuals to hide periodically. The tracking of individuals within these ground types was achieved by infrared light, tagging individuals, video treatments, and semi‐automatic cleaning of trajectories. We tested different procedures to obtain segments with identical durations to quantify speeds and sinuosities. These procedures were characterized by the junction time gap between trajectory fragments, the rediscretization time of trajectories, and whether or not to use interpolation to fill in missing points in the trajectories. Earwigs exhibited significantly slower and more sinuous movements on soil with banana plant residues than on bare soil. Long time gaps for trajectory junction, extended rediscretization times, and interpolation were complementary means to integrate concealed movements in the trajectories. The highest slowdown in plant residues was detected when the procedure could account for longer periods under the residues. These results suggest that earwigs spent a significant amount of time concealed by the residues. Additionally, the residues strongly decreased the earwigs' movement. Since the technical solutions presented in this study are inexpensive, easy to set up, and replicate, they represent valuable contributions to the emerging field of video monitoring. [ABSTRACT FROM AUTHOR]

Sewage disposal has become a major ecological problem in metropolitan areas and semiurban communities, with effluents from both residential and industrial activities discharged directly into water bodies, constituting a major cause of water pollution. Twelve mesocosms were set up, each receiving approximately 15 liters of water containing algae. Weekly sampling for physical chemical parameters, phytoplankton biomass, and biochemical components was done for four weeks. The results revealed that 41 species of phytoplankton were identified throughout the course of four weeks, and that pH remained around neutral levels, with increases in dissolved oxygen (DO) as the number of weeks increased. Furthermore, the physico-chemical indicators showed a decrease with an increase in the number of weeks (total dissolved solids, 70.50 %, nitrate 97.44 %, phosphorus 100%, ammonium 92.26%, potassium 91.35%, zinc 96.52%, manganese 98.63%, iron 92.90%, copper 97.56%, nickel 98.66%). While biological components such as fat, glucose, and protein had increased with number of days. These findings prove mesocosm as the optimum and cost-efficient method of wastewater treatment for enterprises before the release of effluents into water bodies that eventually join rivers. [ABSTRACT FROM AUTHOR]

Increased decomposition rates in shallow lakes with global warming might increase the release of atmospheric greenhouse gases, thereby producing positive feedback for global warming. However, how climate warming affects litter decomposition is still unclear in lake ecosystems. Here, we tested the effects of constant and variable warming on the bacterial metabolic potential of typically submerged macrophyte (Potamogeton crispus L.) litters during decomposition in 18 mesocosms (2500 L each). The results showed that warming reduced main chemoheterotrophic metabolic potential but promoted methylotrophy metabolism, which means that further warming may alter methane-cycling microbial metabolism. The nitrate reduction function was inhibited under warming treatments, and nitrogen fixation capability significantly increased under variable warming in summer. The changes in dissolved oxygen (DO), pH, conductivity and ammonium nitrogen driven by warming are the main environmental factors affecting the bacteria's metabolic potential. The effects of warming and environmental factors on fermentation, nitrate reduction and ammonification capabilities in stem and leaf litter were different, and the bacterial potential in the stem litter were more strongly responsive to environmental factors. These findings suggest that warming may considerably alter bacterial metabolic potential in macrophyte litter, contributing to long-term positive feedback between the C and N cycle and climate. [ABSTRACT FROM AUTHOR]

The climate-driven changes in temperature, in combination with high inputs of nutrients through anthropogenic activities, significantly affect phytoplankton communities in shallow lakes. This study aimed to assess the effect of nutrients on the community composition, size distribution, and diversity of phytoplankton at three contrasting temperature regimes in phosphorus (P)–enriched mesocosms and with different nitrogen (N) availability imitating eutrophic environments. We applied imaging flow cytometry (IFC) to evaluate complex phytoplankton communities changes, particularly size of planktonic cells, biomass, and phytoplankton composition. We found that N enrichment led to the shift in the dominance from the bloom-forming cyanobacteria to the mixed-type blooming by cyanobacteria and green algae. Moreover, the N enrichment stimulated phytoplankton size increase in the high-temperature regime and led to phytoplankton size decrease in lower temperatures. A combination of high temperature and N enrichment resulted in the lowest phytoplankton diversity. Together these findings demonstrate that the net effect of N and P pollution on phytoplankton communities depends on the temperature conditions. These implications are important for forecasting future climate change impacts on the world's shallow lake ecosystems. [ABSTRACT FROM AUTHOR]

Northern peatlands play an important role in the global C cycle due to their large C stocks and high potential methane (CH4) emissions. The CH4 and CO2 cycles of these systems are closely linked to hydrology, with water table level regulating the balance of oxic and anoxic conditions and the water content of Sphagnum mosses that dominate primary production. Previous work has demonstrated that hyperspectral indices well‐suited to the detection of altered hydrology in Sphagnum peatlands are also highly correlated with GPP. However, little work has been done to extend these findings to CH4 effluxes. In this study, we evaluate the utility of four hyperspectral indices, two reflecting vegetation photosynthetic function (chlorophyll index (CI); normalized difference vegetation index) and two reflecting water content (wetness index (WI); floating water band index), for detecting effects of altered water table, precipitation, and vegetation community on CH4 and CO2 exchange in two peatland mesocosm studies. We found that CI is a good predictor of net CO2 exchange, and that it captured both drought and vegetation effects consistently across a broad range of vegetation treatments. Further, we demonstrate for the first time that WI combined with CI explained a significant percentage of CH4 efflux (R2 = 0.32–0.57). Our results indicate that CI and WI together may be effective tools for detecting effects of altered hydrology and vegetation on northern Sphagnum‐peatland CH4 and CO2 emissions, with implications for detecting and modeling changes in emissions of greenhouse gases at scales ranging from the ecosystem to the Earth system. Plain Language Summary: Peatland ecosystems are important contributors to the global cycles of two major greenhouse gases ‐ methane (CH4) and carbon dioxide (CO2). These ecosystems occur where high water tables inhibit decomposition of plant litter and organic matter. The depth of the non‐saturated layer regulates uptake of CO2 via photosynthesis by Sphagnum mosses which are often abundant to dominant parts of the ecosystem, as well as emission of CH4 by microorganisms living deep in the peat and consumption of CH4 by microorganisms living near the peat surface. Multiple global change factors such as land‐use change, warming, and altered precipitation have the potential to lower water tables in peatlands, thereby affecting greenhouse gas exchange with the atmosphere. Remote sensing methods, such as drones and satellites, can be used to evaluate changes in water tables over large scales, which is useful because northern peatlands are distributed across vast stretches of inaccessible boreal regions. In this study, we evaluated the use of hyperspectral remote sensing techniques to detect changes in water tables in an outdoor experimental facility mimicking natural peatlands, and further detect changes in CH4 and CO2 cycles associated with altered water tables. We find that hyperspectral methods were effective at detecting the effects of altered water tables on greenhouse gas exchange, which supports further work developing these methods for larger scale applications. Key Points: In peatlands altered water tables, precipitation, and vegetation affect CH4 and CO2 exchange of a large terrestrial CO2 sink and CH4 sourceWe show that strong proxies of the processes underlying these effects on CO2 and CH4 exchange can be detected via remote sensingCombining vegetation and peatland mapping with spectral detection of water and photosynthetic capacity will improve our ability to detect greenhouse gas emissions across boreal peatlands [ABSTRACT FROM AUTHOR]

Bioturbation by non-native common carp (carp) can facilitate an ecosystem phase shift from clear to turbid water in shallow lakes and ponds, with negative effects on abundance of aquatic animals and plants. Management of carp often involves reducing populations below a threshold biomass at which important components of the aquatic ecosystem, like submerged aquatic vegetation (SAV), recover. To evaluate control targets for a nuisance carp population in Malheur Lake in SE Oregon, USA, we conducted a mesocosm experiment in a small wetland within the lake's drainage basin. We stocked 200-m2 enclosures with individual or multiple carp of different age classes at target biomasses of 50, 100, and 300 kg ha−1. We measured turbidity, total suspended sediments, nutrients, chlorophyll- a , and surface coverage of SAV four times within a single growing season. Turbidity increased through time and soluble P was higher in 300 kg ha−1 carp treatments compared to the control, but few changes were observed for any of the other variables at any biomass. Results suggest that with well established SAV, a maintenance carp biomass threshold of <200 kg ha−1 will not result in a phase shift from a clear- to turbid-water state in the short-term. Invasive common carp are difficult to eradicate so management often entails reducing their population to a level that helps restore one or more components of the aquatic ecosystem. We conducted an enclosure experiment in a small wetland to determine the threshold biomass for carp at which water clarity, nutrients, and submerged aquatic vegetation would, or would not, be affected by carp. [ABSTRACT FROM AUTHOR]

River flow regimes face increasing pressure from human activities including water resource management operations and climate change. Consequently, extreme hydrological events are becoming more severe and commonplace, and there is a pressing need to understand and manage their ecological effects. Extreme low flows (ELFs)—those displaying significantly greater magnitudes and durations than typical low‐flow conditions—are being increasingly experienced globally. Fish and macroinvertebrate responses to ELFs have been more widely researched relative to other organism groups in riverine environments, although such studies have employed variable methodological techniques. In this perspective piece, we identify field‐based assessments and controlled experiments as two key research paradigms used to examine riverine faunal responses to ELFs. Field‐based assessments are often explorative and can benefit from utilising large‐scale and long‐term datasets. Alternatively, controlled experiments typically employ more hypothesis‐driven approaches and can establish strong cause and effect linkages through high replication and control over potentially confounding parameters. Each paradigm clearly possesses their respective strengths, which we highlight and discuss how these could be better harnessed to optimise scientific advancements. To date, studies examining faunal responses to ELFs in these two research paradigms have largely been undertaken in parallel. Here, we argue that future research should seek to develop closer synergies to optimise the quality and quantity of evidence to better understand riverine faunal responses to ELFs. Such scientific advances are of paramount importance given the vulnerability of riverine fauna, and the ecosystems they comprise, to a new era of ELFs in many global regions. [ABSTRACT FROM AUTHOR]

Background: Mesocosm experiments have become increasingly popular in climate change research as they bridge the gap between small-scale, less realistic, microcosm experiments, and large-scale, more complex, natural systems. Characteristics of aquatic mesocosm designs (e.g., mesocosm volume, study duration, and replication) vary widely, potentially affecting the magnitude and direction of effect sizes measured in experiments. In this global systematic review we aim to identify the type, direction and strength of climate warming effects on aquatic species, communities and ecosystems in mesocosm experiments. Furthermore, we will investigate the context-dependency of the observed effects on several a priori determined effect moderators (ecological and methodological). Our conclusions will provide recommendations for aquatic scientists designing mesocosm experiments, as well as guidelines for interpretation of experimental results by scientists, policy-makers and the general public. Methods: We will conduct a systematic search using multiple online databases to gather evidence from the scientific literature on the effects of warming experimentally tested in aquatic mesocosms. Data from relevant studies will be extracted and used in a random effects meta-analysis to estimate the overall effect sizes of warming experiments on species performance, biodiversity and ecosystem functions. Experimental characteristics (e.g., mesocosm size and shape, replication-level, experimental duration and design, biogeographic region, community type, crossed manipulation) will be further analysed using subgroup analyses.

Background Nymphaeid macrophytes, rooting in the sediment of water bodies and characterized by floating leaves, play an important role in wetland ecosystems. The present research deals with the effects of limited space, limited nutrient availability, water temperature and an unexpected inundation on the production, turnover and plasticity of floating leaves of the globally widespread species Nymphoides peltata (Fringed waterlily). Methods The effects of these environmental conditions were studied in two plots in outdoor concrete tanks (CT1, CT2, mesocosms simulating occurrence in small ponds) and in two plots in the floodplain oxbow lake Bemmelse Strang (BS1, BS2). Plot CT1 was situated in a stand coexisting with helophytes, plot CT2 in a monospecific stand, plot BS1 in the center and plot BS2 at the open water border of a monospecific stand. All floating leaf blades within the plots were marked at appearance at the water surface and subsequently length, width and damage of each leaf and maximum and minimum water temperatures were measured bi-weekly. Area and biomass of leaf blades were calculated based on leaf length and width and were used to calculate turnover rates and production. Results The growth period started in May and ended mid-October with continuous production of floating leaves during nearly the whole vegetation period. In the tanks the water level was very stable, but the lake underwent an inundation by river water, causing a sudden loss of existing leaves. Considering environmental conditions and based on the assumed ranking from low to high nutrient availability, the ranking of the plots was CT1, CT2, BS1, BS2. This order was found for maximum leaf life span and maximum leaf length, and the reverse order was found for number of leaves, new leaves per day and duration of the vegetation period. Turnover rates appeared to be relatively similar for plots CT1, CT2 and BS1, but for the deeper border plot BS2 lower ratios were found. These results indicate that increased enclosure with expected nutrient limitation causes (1) the production of high numbers of small leaves with larger totals for leaf area and biomass, (2) a shift towards increased sexual reproduction by the production of more flowering stem leaves.

Abstract Understanding the effect of ground types on foraging movements of ground‐dwelling arthropods is a key step to managing their spatial distribution as required for successful conservation biological control. Indeed, fine movements at the centimeter scale can strongly influence the foraging ability of pest predators. However, because radio frequency identification or harmonic tracking techniques are not yet suitable for small species and video tracking focuses on uniform and light backgrounds, foraging movements have rarely been studied in relation to ground types. We present a method to track a ground‐dwelling arthropod (the earwig Euborellia caraibea) at night, walking on two contrasted ground types: bare soil and soil partly covered with a stratum of banana plant residues allowing individuals to hide periodically. The tracking of individuals within these ground types was achieved by infrared light, tagging individuals, video treatments, and semi‐automatic cleaning of trajectories. We tested different procedures to obtain segments with identical durations to quantify speeds and sinuosities. These procedures were characterized by the junction time gap between trajectory fragments, the rediscretization time of trajectories, and whether or not to use interpolation to fill in missing points in the trajectories. Earwigs exhibited significantly slower and more sinuous movements on soil with banana plant residues than on bare soil. Long time gaps for trajectory junction, extended rediscretization times, and interpolation were complementary means to integrate concealed movements in the trajectories. The highest slowdown in plant residues was detected when the procedure could account for longer periods under the residues. These results suggest that earwigs spent a significant amount of time concealed by the residues. Additionally, the residues strongly decreased the earwigs' movement. Since the technical solutions presented in this study are inexpensive, easy to set up, and replicate, they represent valuable contributions to the emerging field of video monitoring.

Ocean acidification (OA) is known to influence biological and ecological processes, mainly focusing on its impacts on single species, but little has been documented on how OA may alter plankton community interactions. Here, we conducted a mesocosm experiment with ambient (∼410 ppmv) and high (1000 ppmv) CO 2 concentrations in a subtropical eutrophic region of the East China Sea and examined the community dynamics of microeukaryotes, bacterioplankton and microeukaryote-attached bacteria in the enclosed coastal seawater. The OA treatment with elevated CO 2 affected taxa as the phytoplankton bloom stages progressed, with a 72.89% decrease in relative abundance of the protist Cercozoa on day 10 and a 322% increase in relative abundance of Stramenopile dominated by diatoms, accompanied by a 29.54% decrease in relative abundance of attached Alphaproteobacteria on day 28. Our study revealed that protozoans with different prey preferences had differing sensitivity to high CO 2 , and attached bacteria were more significantly affected by high CO 2 compared to bacterioplankton. Our findings indicate that high CO 2 changed the co-occurrence network complexity and stability of microeukaryotes more than those of bacteria. Furthermore, high CO 2 was found to alter the proportions of potential interactions between phytoplankton and their predators, as well as microeukaryotes and their attached bacteria in the networks. The changes in the relative abundances and interactions of microeukaryotes between their predators in response to high CO 2 revealed in our study suggest that high CO 2 may have profound impacts on marine food webs. • The communities were strongly affected by phytoplankton bloom stages. • Ocean acidification (OA) affected some taxa as the phytoplankton bloom stages progressed. • OA changed the co-occurrence network complexity and stability of microeukaryotes. • OA altered the proportions of potential interactions between phytoplankton and their predators. [ABSTRACT FROM AUTHOR]

Co-deployment of a portfolio of carbon removal technologies is anticipated in order to remove several gigatons of carbon dioxide from the atmosphere and meet climate targets. However, co-application effects between carbon removal technologies have rarely been examined, despite multiple recent perspectives suggesting potential synergies between basalt enhanced weathering and biochar application. To study the co-application effects of basalt for enhanced weathering and biochar on carbon sequestration, along with related co-benefits and risks, we conducted a fully replicated factorial mesocosm experiment with wheat. Basalt applied alone (74 t ha−1) resulted in an estimated carbon sequestration potential of 1.13 t of equivalent CO 2 ha−1 over the course of approximately 6 months. Co-application with biochar (12 t ha−1) did not significantly increase estimated carbon sequestration potential. Total alkalinity fluxes and isotopic evidence indicated nearly exactly additive effects of basalt and biochar co-applied, with no significant interaction effect. Biochar carbon sequestration, approximately 32 t of equivalent CO 2 ha−1 in our experiment, was unaffected by basalt addition during our experiment. Co-benefits of basalt and biochar on plant biomass as well as nutrient uptake and availability similarly mostly showed additive tendencies when co-applied. Nonetheless, a few synergistic tendencies were observed when co-applied for plant potassium and magnesium uptake as well as soil calcium availability. Soil calcium availability increased by 126% compared to expected effects based on separate application. Finally, we did not observe a reduction in the increased uptake of potentially harmful trace elements released from basalt when co-applied with biochar. Overall, our results support the co-application of basalt for enhanced weathering and biochar, with additive effects on carbon sequestration and additive, if not synergistic, effects on associated co-benefits. • Co-application of biochar and basalt for enhanced weathering resulted in additive carbon sequestration potentials. • Co-benefits for biomass, nutrient uptake and availability were predominantly additive, largely driven by basalt addition. • Co-application did not reduce the increased plant uptake of potentially harmful trace elements. [ABSTRACT FROM AUTHOR]

• Soil microbial alpha and beta diversity decreased following pile burning. • Presence/type of burn scar structures soil microbiomes alongside location and time since burn. • Pile burns selected for pyrophilous taxa with increased 16S rRNA gene copy numbers. • High intensity pile burns represent a wildfire proxy for soil microbiome research. • Pile burns may clarify post-fire ectomycorrhizal loss impacts on forest recovery. Wildfires in the western US are increasing in frequency, size, and severity. These disturbances alter soil microbiome structure and function, with greater fire severity leading to more pronounced impacts to bacterial, archaeal, and fungal communities. These changes have implications for the provisioning of microbially-mediated ecosystem services (e.g., carbon sequestration, clean water supplies) typically associated with forested watersheds. Challenges in sampling wildfire-impacted areas immediately post-burn have limited our assessment of short-term (i.e., days to weeks) changes in the soil microbiome and understanding of how microbial populations may influence post-fire biogeochemistry and ecosystem recovery. The identification of potential high severity wildfire proxies may help address some of these knowledge gaps. One potential proxy is pile burns scars, which are produced from a set of common techniques for fuel disposal and site preparation in conifer forests throughout the western US and beyond. We sampled depth-resolved layers from fire-impacted soil and combusted litter and woody materials in a series of recent pile burn scars near West Yellowstone, Montana and nearby unburned mineral soil controls to assess whether the pile burn scars exhibited microbial signatures characteristic of forest soils impacted by recent high severity wildfire. Changes in soil carbon and nitrogen chemistry and patterns of microbial alpha and beta diversity broadly aligned with those observed following wildfire, particularly the enrichment of so-called 'pyrophilous' taxa. Furthermore, many of the taxa enriched in burned soils likely encoded putative traits that benefit microorganisms colonizing these environments, such as the potential for fast growth or utilization of pyrogenic carbon substrates. We suggest that pile burn scars may represent a useful proxy along the experimental gradient from muffle furnace or pyrocosm studies to largescale prescribed burns in the field to advance understanding of the soil (and related layers, like ash) microbiome following high severity wildfires, particularly when coupled with experimental manipulation. Finally, we discuss existing research gaps that experimentally manipulated pile burns could be utilized to address. [ABSTRACT FROM AUTHOR]

Oil sands process affected water (OSPW) is produced during bitumen extraction and typically contains high concentrations of trace metals. Constructed wetlands have emerged as a cost effective and green technology for the treatment of metals in wastewaters. Whether the addition of amendments to constructed wetlands can improve metal removal efficiency is unknown. We investigated the synergistic effects of carbon based amendments and wetland plant species in removal of arsenic, cadmium, cobalt, chromium, copper, nickel, and selenium from OSPW. Three native wetland species (Carex aquatilis , Juncus balticus , Scirpus validus) and two amendments (canola straw biochar, nano humus) were investigated in constructed wetland mesocosms over 60 days. Amendment effect on metal removal efficiency was not significant, while plant species effect was. Phytoremediation resulted in removal efficiencies of 78.61–96.31 % for arsenic, cadmium, and cobalt. Carex aquatilis had the highest removal efficiencies for all metals. Amendments alone performed well in removing some metals and were comparable to phytoremediation for cadmium, cobalt, copper, and nickel. Metals were primarily distributed in roots with negligible translocation to shoots. Our work provides insights into the role of plants and amendments during metal remediation and their complex interactions in constructed treatment wetlands. [Display omitted] • Carbon based amendments did not improve phytoremediation. • All native plant species efficiently removed arsenic, cadmium and cobalt from OSPW. • Carex aquatilis had highest removal efficiency for all seven metals. • Amendments alone were efficient for removal of cadmium, cobalt, copper, nickel. • Longer than 60 days is required to reduce metal concentrations to below guidelines. [ABSTRACT FROM AUTHOR]

Agriculture's global challenge to feed an estimated 7.7 billion people is further exacerbated by less available cropland for production and rapidly changing climate patterns. Pesticides are often utilized to minimize crop losses due to pest infestations; however, problems arise when these chemicals are transported off production acreage, either by storm or irrigation events, and into nearby water bodies. Innovative management practices are needed to not only reduce the volume of runoff, but also to mitigate various pollutants, such as pesticides, within the runoff. One such practice being evaluated involves using rice (Oryza sativa) as a pesticide mitigation tool. While rice plants may serve as a mechanism for phytoremediation, whether the seeds harvested from exposed plants could then be utilized as a human food source is an unanswered question. Thirty round mesocosms (55 L volume; 56 cm diameter; six replicates per treatment) were established with rice and exposed to aqueous concentrations of the pesticides clomazone, propanil, or cyfluthrin, as well as a mixture of the three pesticides. Six replicates with rice and no pesticide exposure served as controls. Initial pesticide exposure took place 8 weeks post-planting and continued once a week for 5 weeks. Rice plants, unmilled seeds, and mesocosm sediment were collected from each mesocosm 2 weeks after seed formation began and analyzed for pesticide concentrations using gas chromatography. Concentrations of pesticides in unmilled seed were below detection for individual exposures of clomazone, propanil, and cyfluthrin. When rice was exposed to the pesticide mixture, the mean ± SE unmilled seed cyfluthrin concentration was 14.8 ± 1.25 µg kg−1. These small-scale, preliminary studies offer insight into the possibility of using immature rice plants as a phytoremediation tool, while harvesting its grain after plant maturation for human consumption. Further research is needed to address this question on a larger scale and with multiple pesticide mixtures. [ABSTRACT FROM AUTHOR]

Seagrass beds serve as important carbon sinks, and it is thought that increasing the quantity and quality of such sinks could help to slow the rate of global climate change. Therefore, it will be important to (1) gain a better understanding of seagrass bed metabolism and (2) document how these high-productivity ecosystems are impacted by climate change-associated factors, such as ocean acidification (OA) and ocean warming (OW). A mesocosm-based approach was taken herein in which a tropical, Western Pacific seagrass species Thalassia hemprichii was cultured under either control or OA-simulating conditions; the temperature was gradually increased from 25 to 31 °C for both CO2 enrichment treatments, and it was hypothesized that this species would respond positively to OA and elevated temperature. After 12 weeks of exposure, OA (~1200 ppm) led to (1) increases in underground biomass and root C:N ratios and (2) decreases in root nitrogen content. Rising temperatures (25 to 31 °C) increased the maximum quantum yield of photosystem II (Fv:Fm), productivity, leaf growth rate, decomposition rate, and carbon sequestration, but decreased the rate of shoot density increase and the carbon content of the leaves; this indicates that warming alone does not increase the short-term carbon sink capacity of this seagrass species. Under high CO2 and the highest temperature employed (31 °C), this seagrass demonstrated its highest productivity, Fv:Fm, leaf growth rate, and carbon sequestration. Collectively, then, it appears that high CO2 levels offset the negative effects of high temperature on this seagrass species. Whether this pattern is maintained at temperatures that actually induce marked seagrass stress (likely beginning at 33–34 °C in Southern Taiwan) should be the focus of future research. [ABSTRACT FROM AUTHOR]

Since species vary in abundance and host competence (i.e., ability to get infected and transmit a pathogen), changes in species composition caused by biodiversity loss impacts disease dynamics. Forecasting effects of species composition on disease depends on community (dis)assembly, processes determining how species are added to (or lost from) communities. We simulated community assembly by planting mesocosms, nested along a richness gradient, and tested how relationships between richness, species assembly order, and overall density affect disease risk. Mesocosms with up to six crop species of varying competence were inoculated with a soilborne fungal pathogen, Rhizoctonia solani. Disease was measured as species‐level prevalence, community‐level prevalence, and total number of diseased plants. Regardless of metric, richness limited disease when species assembly order negatively correlated with competence and total density remained unchanged with richness. When density increased with richness or species assembled randomly, richness primarily correlated positively or weakly with disease. Our results align with theoretical expectations and represent the first empirical study to test the influence of species densities, assembly order, and competence on diversity–disease relationships. [ABSTRACT FROM AUTHOR]

Oil spills in coastal waters can have devastating impacts on local ecosystems, from the microscopic base through to mammals and seabirds. Increasing transport of diluted bitumen has led to concerns about how this novel product might impact coastal ecosystems. A mesocosm study determined that the type of diluent and the season can affect the concentrations of hydrocarbons entering the water column from a surface spill. Those same mesocosms were sampled to determine whether diluent type and season also affected the microbial response to a surface spill. Overall, there were no differences in impacts among the three types of diluted bitumen, but there were consistent responses to all products within each season. Although microbial abundances with diluted bitumen rarely differed from unoiled controls, community structure in these organisms shifted in response to hydrocarbons, with hydrocarbon-degrading bacteria becoming more abundant. The relative abundance of heterotrophic eukaryotes also increased with diluted bitumen, with few photosynthetic organisms responding positively to oil. Overall shifts in the microbial communities were minimal relative to spills of conventional oil products, with low concentrations of hydrocarbons in the water column. Oil spill response should focus on addressing the surface slick to prevent sinking or stranding to minimize ecosystem impacts. [ABSTRACT FROM AUTHOR]

Ocean acidification and warming are expected to disproportionately affect high‐latitude calcifying species, such as crustose coralline algae. Clathromorphum nereostratum and Clathromorphum compactum are the primary builders of carbonate‐hardgrounds in the Aleutians Islands of Alaska and North Atlantic shelf, respectively, providing habitat and settlement substrates for a large number of species. We exposed wild‐collected specimens to 12 pCO2/T treatments (344–3322 μatm; 6.38–12.40°C) for 4 months in a factorially crossed, replicated laboratory experiment. Impacts of pCO2/T on algal calcification were quantified from linear extension and buoyant weight. Here we show that, despite belonging to the same genus, C. nereostratum exhibited greater sensitivity to thermal stress, while C. compactum exhibited greater sensitivity to pH stress. Furthermore, multivariate models of algal calcification derived from the experiment indicate that both C. nereostratum and C. compactum will commence net dissolution as early as 2120 and 2200 AD, respectively. Our results therefore indicate that near‐term climate change may lead to substantial degradation of these species and loss of the critical hardground habitats that they form. Key Points: High latitude crustose coralline algae (CCA) C. compactum and C. nereostratum will struggle to maintain their skeletons under predicted future pCO2 levelsThis reduction in CCA viability will impact a wide range of benthic organismsDifferent species of high latitude CCA react differently to the same combinations of pCO2 and temperature conditions [ABSTRACT FROM AUTHOR]

Controlled mesocosm experiments can add substantially to our knowledge of the influence of environmental factors on freshwater assemblages by partitioning the possible effects of different drivers. Reporting results of such an experiment, Bray et al. (2019) concluded that effects of salinity on salt-sensitive stream invertebrates were substantially modified by interspecific biotic interactions with salt-tolerant invertebrates from a high-salinity stream. Chessman (2021) questioned this conclusion on three grounds: (1) confounding of the experimental design, (2) lack of evidence that purported diverse effects of biotic interactions were beyond mere stochastic variation, and (3) absence of mechanistic explanations for supposed effects grounded in organism biology and ecology. Chessman (2021) also conducted an independent statistical analysis of publicly available data from the experiment, which did not support the study's conclusions. Kefford et al. (2022) dispute Chessman's (2021) findings by analysing previously unpublished data from the experiment, which they claim demonstrates that the experimental design was not confounded, and criticise Chessman's (2021) statistical analysis. Here, I respond to their new analysis and criticisms, explaining why they do not dispel any of the concerns expressed by Chessman (2021). [ABSTRACT FROM AUTHOR]

1. Mesocosm experiments enable researchers to study animal dynamics, but determining accurate estimates of survival and development rates of different life stages can be difficult, especially as the subjects may be hard to sample and mortality rates can be high. We propose a new methodology for estimating such parameters. 2. We used an experimental set-up with 48 aquatic mesocosms, each with 20 first instar mosquito larvae and under 1 of 12 treatments with varying temperatures and nutrient concentrations. We took daily subsamples of the aquatic life stages as well as counting the emerging adults. We developed a method to estimate the survival and development probabilities at each life stage, based on optimising a matrix population model. We used two different approaches, one assuming the difference between predictions and observations was normally distributed, and the other using a combination of a normal and a multinomial distribution. For each approach, the resulting optimisation problem had around 100 parameters, making conventional gradient descent ineffective with our limited number of data points. We solved this by computing the formal derivatives of our matrix model. 3. Both approaches proved effective in predicting mosquito populations over time, also when compared against a separate validation dataset, and the two approaches produced similar results. They also both predicted similar trends in the survival and development probabilities for each life stage, although there were some differences in the actual values. The approach which only used the normal distribution was considerably more computationally efficient than the mixed distribution approach. 4. This is an effective approach for determining the survival and development rates of small animals in mesocosm experiments. We have not found any other reliable methodology for estimating these parameters, especially not from incomplete data or when there are many different experimental treatments. This methodology enables researchers to gain a much more detailed understanding of the life cycles of small animals, potentially leading to advances in a wide range of areas, for example in mosquito-borne disease risk or in considering the effects of biodiversity loss or climate change on different species. [ABSTRACT FROM AUTHOR]

Purpose: Climate models predict shifts in precipitation patterns characterized by increased precipitation amount and decreased frequency for semi-arid grasslands in northeast China. However, under these novel climatic conditions, potential differences in plant biomass and its allocation among different degraded grasslands remain unclear. Methods: We conducted a mesocosm experiment to test the effects of higher precipitation amount (increased by 50% from the long-term mean) and lower frequency (decreased by 50%) on plant biomass and allocation in the lightly, moderately, and severely degraded grasslands. Results: Lower precipitation frequency promoted belowground biomass but reduced aboveground biomass through enhancing soil water variability. Higher precipitation amount enhanced aboveground biomass in the lightly and moderately degraded grasslands, but not in the severely degraded grassland due to lower soil nitrogen availability. Lower precipitation frequency weakened or ended the positive effects of higher precipitation amount on aboveground and belowground biomass, and higher precipitation amount suppressed the enhancement of lower precipitation frequency on belowground biomass, which could be attributed to temporary waterlogging. Plants in the moderately degraded grassland preferred to adjust root vertical distribution, which was impacted by the changes in plant community composition. However, adjustment of aboveground biomass vs. belowground biomass was the primary biomass allocation strategy in the other two grasslands. Conclusions: Our findings emphasized the importance of considering the degradation level of grasslands when predicting responses of ecosystem functions to the projected changes in precipitation regimes. These findings are critical for making feasible decisions for the sustainable management of degraded grasslands. Legend: + and − indicate positive and negative relationships, respectively LDG, MDG and SDG-lightly degraded, moderately degraded and severely degraded grasslands, respectively DPF-decreased precipitation frequency treatment, IPA-increased precipitation amount treatment SWC and CVSWC-mean and variation of soil water content, respectively SINC-soil inorganic nitrogen content AGB and BGB-aboveground and belowground biomass, respectively fAGB-AGB / total biomass BGB0–10 (%)-belowground biomass proportion in the 0–10 cm soil layer, BGB 0 - 10 / BGB 0 - 30 × 100 RAGB-relative aboveground biomass [ABSTRACT FROM AUTHOR]

Waters provide essential needs both for human societies as well as natural ecosystems. Floating solar PV (FPV) applications on water bodies are currently in strong demand worldwide. Floating solar PV system is a new concept in renewable energy with the solar plants by harnessing available water surface, such in dams, lakes, and other water bodies. Although the floating solar PV industry is becoming more and more popular, the study on the biological, chemical, and physical properties effects of using FPV cover on natural water coverage - especially in tropical countries - has not been widely carried out yet. This paper aimed to evaluate the effect of floating solar PV on temperature, DO (dissolved oxygen), TDS (total dissolved solids), total phosphorus concentration, and chlorophyll-a concentration using mesocosm experiments to understand the biological, chemical, and physical process under closed environment. The experiment was conducted in a natural water body, Mahoni Lake, in which a total amount of 7 water samples were collected from each mesocosms. The results show that the floating solar PV reduces the average temperature, DO, conductivity, TDS, and chlorophyll-a concentration changes (p-value < 0.05); and the floating solar PV does not directly reduce the average total phosphorus concentration due to high probability of thermal stratification (p-value > 0.05). [ABSTRACT FROM AUTHOR]

Artificial upwelling has been proposed as a means of enhancing oceanic CO2 sequestration and/or raising fishery yields through an increase in primary production in unproductive parts of the ocean. However, evidence of its efficacy, applicability and side effects is scarce. Here we present part of the results of a 37-day mesocosm study conducted in oligotrophic waters off the coast of Gran Canaria. The goal was to assess in situ the effects of artificial upwelling on the pelagic community. Upwelling was simulated via two modes: i) a singular deep-water pulse and ii) a recurring supply every 4 days; each mode at four different intensities defined by the total amount of nitrate added: approx. 1.5, 3, 5.7, and 11 µmol L-1. In this study we focus on the phytoplankton response through size-fractionated 14C primary production rates (PP), Chlorophyll a and biomass. We observed increases in PP, accumulated PP, Chlorophyll a and biomass that scaled linearly with upwelling intensity. Upwelling primarily benefitted larger phytoplankton size fractions, causing a shift from pico- and nano- to nano- and microphytoplankton. Recurring deep-water addition produced more biomass under higher upwelling intensities than a single pulse addition. It also reached significantly higher accumulated PP per unit of added nutrients and showed a stronger reduction in percentage extracellular release with increasing upwelling intensity. These results demonstrate that oligotrophic phytoplankton communities can effectively adjust to artificial upwelling regardless of upwelling intensity, but differently depending on the upwelling mode. Recurring supply of upwelled waters generated higher efficiencies in primary production and biomass build-up than a single pulse of the same volume and nutrient load.

Phosphorus (P) bioavailability affects plant nutrition. P can be present in soils in different chemical forms that are not available for direct plant uptake and have to be acquired by different mechanisms, representing different resource niches. These mechanisms, of which many seem to be attributed to mycorrhiza, likely influence the diversity and stability of plant communities in natural ecosystems, as they also might help to overcome a future shortage of P supply in agro-ecosystems. In order to understand the mechanisms of P acquisition, the associated carbon costs, and the resource partitioning by mycorrhizal fungi, the ecosystem situation has to be mimicked in smaller scaled experiments. Here, different experimental setups are evaluated using plantlets of Populus x canescens and its functional ectomycorrhizal (ECM) fungus Paxillus involututs strain MAJ. To investigate resource partitioning involving mycorrhizae, the protocols of this study describe preparation of an in vitro and a rhizotrone culture systems for studies under axenic conditions as well as a mesocosm culture system for greenhouse conditions. We also describe the construction of separate compartments containing nutrients and excluding plant roots as well as the progress that has been made in in vitro propagation of plant and ECM fungal material. The practical experience made in our study shows that the in vitro culture system is prone to desiccation and its construction and maintenance are more time consuming and complicated. In contrast, with the axenic rhizotrone culture system and the mesocosms we have created more robust and very versatile systems that are also suitable for greenhouse conditions.

Abstract Decomposer fungi play a fundamental role in terrestrial ecosystem dynamics. In the southwestern United States, climate change is causing more frequent and severe droughts, which may alter fungal community composition and activity. Investigating relationships between fungal traits may improve the prediction of fungal responses to drought. In this dual field and laboratory experiment, we examine whether trade‐offs occur between traits associated with drought. Specifically, we test the hypothesis that fungi sort into lifestyles specializing in growth yield, resource acquisition, and drought stress tolerance (“YAS” framework). For the field experiment, we constructed microbial “cages” containing sterilized litter and 1 of 10 fungal isolates. These cages were placed in long‐term drought and control plots in a southern Californian grassland for 6 and 12 months. We measured fungal hyphal length per unit litter mass loss for growth yield, the potential activities of four extracellular enzymes for resource acquisition, and the ability to grow in the drought versus control plots for drought stress tolerance. We compared these results with a laboratory microcosm experiment constructed with the same fungal isolates and that measured the same fungal traits. The field experiment corroborated our laboratory results, in that no trade‐offs were observed between growth yield and resource acquisition traits. However, in contrast to the laboratory experiment, drought tolerance was negatively related to extracellular enzyme activity and growth yield in the field, implying a trade‐off. Despite this observed trade‐off in the field, growth yield was not hindered by drought. We propose a modification to the YAS framework, by combining the growth yield and resource acquisition lifestyles, which may be more appropriate for this arid system. This joint laboratory and field approach contextualizes a theoretical framework in microbial ecology and improves understanding of fungal community response to climate change.

When ocean warming and acidification impact habitat-forming species, substantial alterations to the supported ecological communities and associated ecosystems are likely to follow. Here, we used experimental manipulations to test the hypotheses that ocean warming and acidification would negatively affect habitat-forming coralline algal turfs and the diverse molluscan assemblages they support. Boulders covered in a turf of Amphiroa anceps with intact faunal assemblages were subjected to an orthogonal combination of current (~ 23 °C) and future (~ 26 °C) ocean temperatures, and current (~ 430 µatm) and future (~ 880 µatm) seawater pCO2. Ocean warming negatively impacted the cover and photosynthetic efficiency of Amphiroa fronds, whereas ocean acidification caused the biomass per unit area and the frond density of Amphiroa turf to be 56% and 59% less than current ocean conditions, respectively. Ocean acidification also caused a significant change in the structure of molluscan assemblages associated with Amphiroa turf, which included a 43% and a 61% reduction in the species richness and overall abundance of molluscs, respectively. The results demonstrate that coralline algal turfs are particularly vulnerable to ocean climate change, which has implications for the biodiversity and ecosystem functions supported by these globally distributed foundation species.

Abstract Ocean acidification and warming are expected to disproportionately affect high‐latitude calcifying species, such as crustose coralline algae. Clathromorphum nereostratum and Clathromorphum compactum are the primary builders of carbonate‐hardgrounds in the Aleutians Islands of Alaska and North Atlantic shelf, respectively, providing habitat and settlement substrates for a large number of species. We exposed wild‐collected specimens to 12 pCO2/T treatments (344–3322 μatm; 6.38–12.40°C) for 4 months in a factorially crossed, replicated laboratory experiment. Impacts of pCO2/T on algal calcification were quantified from linear extension and buoyant weight. Here we show that, despite belonging to the same genus, C. nereostratum exhibited greater sensitivity to thermal stress, while C. compactum exhibited greater sensitivity to pH stress. Furthermore, multivariate models of algal calcification derived from the experiment indicate that both C. nereostratum and C. compactum will commence net dissolution as early as 2120 and 2200 AD, respectively. Our results therefore indicate that near‐term climate change may lead to substantial degradation of these species and loss of the critical hardground habitats that they form.

Ocean acidification (OA) caused by elevated atmospheric CO2 concentration is predicted to have negative impacts on marine bivalves in aquaculture. However, to date, most of our knowledge is derived from short-term laboratory-based experiments, which are difficult to scale to real-world production. Therefore, field experiments, such as this study, are critical for improving ecological relevance. Due to the ability of seaweed to absorb dissolved carbon dioxide from the surrounding seawater through photosynthesis, seaweed has gained theoretical attention as a potential partner of bivalves in integrated aquaculture to help mitigate the adverse effects of OA. Consequently, this study investigates the impact of elevated pCO2 on the physiological responses of the Pacific oyster Crassostrea gigas in the presence and absence of kelp (Saccharina japonica) using in situ mesocosms. For 30 days, mesocosms were exposed to six treatments, consisting of two pCO2 treatments (500 and 900 μatm) combined with three biotic treatments (oyster alone, kelp alone, and integrated kelp and oyster aquaculture). Results showed that the clearance rate (CR) and scope for growth (SfG) of C. gigas were significantly reduced by elevated pCO2, whereas respiration rates (MO2) and ammonium excretion rates (ER) were significantly increased. However, food absorption efficiency (AE) was not significantly affected by elevated pCO2. The presence of S. japonica changed the daytime pHNBS of experimental units by ~0.16 units in the elevated pCO2 treatment. As a consequence, CR and SfG significantly increased and MO2 and ER decreased compared to C. gigas exposed to elevated pCO2 without S. japonica. These findings indicate that the presence of S. japonica in integrated aquaculture may help shield C. gigas from the negative effects of elevated seawater pCO2.

Thiamethoxam is a neonicotinoid insecticide widely applied in the Canadian Prairies. It has been detected in surface waters of agro-ecosystems, including wetlands, but the potential effects on non-target invertebrate communities in these wetlands have not been well characterized. In an effort to understand better the fate of thiamethoxam in wetlands and the response of invertebrates (zooplankton and emergent insects), model systems were used to mimic wetland flooding into planted fields. Outdoor mesocosms were treated with a single application of thiamethoxam-treated canola seeds at three treatment levels based on a recommended seeding rate (i.e., 6 kg/ha; 1×, 10×, and 100× seeding rate) and monitored over ten weeks. The mean half-life of thiamethoxam in the water column was 6.2 d. There was no ecologically meaningful impact on zooplankton abundances or community structure among treatments. Statistically significant differences were observed in aquatic insect abundance between control mesocosms and the two greatest thiamethoxam treatments (10× and 100× seeding rate). The observed results indicate exposure to thiamethoxam at environmentally relevant concentrations likely does not represent a significant ecological risk to abundance and community structure of wetland zooplankton and emergent insects. [ABSTRACT FROM AUTHOR]

The response of plant growth and development to nutrient and water availability is an important adaptation for abiotic stress tolerance. Roots need to intercept both passing nutrients and water while foraging into new soil layers for further resources. Substantial amounts of nitrate can be lost in the field when leaching into groundwater, yet very little is known about how deep rooting affects this process. Here, we phenotyped root system traits and deep 15N nitrate capture across 1.5 m vertical profiles of solid media using tall mesocosms in switchgrass (Panicum virgatum L.), a promising cellulosic bioenergy feedstock. Root and shoot biomass traits, photosynthesis and respiration measures, and nutrient uptake and accumulation traits were quantified in response to a water and nitrate stress factorial experiment for switchgrass upland (VS16) and lowland (AP13) ecotypes. The two switchgrass ecotypes shared common plastic abiotic responses to nitrogen (N) and water availability, and yet had substantial genotypic variation for root and shoot traits. A significant interaction between N and water stress combination treatments for axial and lateral root traits represents a complex and shared root development strategy for stress mitigation. Deep root growth and 15N capture were found to be closely linked to aboveground growth. Together, these results represent the wide genetic pool of switchgrass and show that deep rooting promotes nitrate capture, plant productivity, and sustainability. [ABSTRACT FROM AUTHOR]

Selenium (Se) is a contaminant of concern in Canada mainly due to its teratogenic effects on fish and birds. However, few studies have assessed the effects of Se on invertebrates in a field setting. The objective of this experiment was to assess potential community‐level impacts of Se additions on zooplankton and benthic macroinvertebrates in a boreal lake ecosystem. From June to August 2018, Se (as selenite) was added to six limnocorrals in Lake 239 at the International Institute for Sustainable Development–Experimental Lakes Area, Northwestern Ontario, Canada, to achieve mean measured aqueous concentrations of 0.4, 0.8, 1.6, 3.4, 5.6 and 7.9 µg Se/L, with three untreated limnocorrals serving as controls (background Se = 0.08–0.09 µg/L). Periphyton, phytoplankton, and invertebrates (zooplankton and benthos) were monitored for 63 days. Zooplankton community composition shifted as a function of Se exposure, with Cladocera biomass and density decreasing with increasing Se concentrations. Similarly, cumulative abundance and biomass of Heptageniidae decreased with increasing Se treatment throughout the experimental period. The present study demonstrated that Se can have impacts on aquatic invertebrates at environmentally relevant exposure levels, and that future ecological risk assessments should consider the impacts of Se on both vertebrates and invertebrates. Environ Toxicol Chem 2022;41:95–107. © 2021 SETAC [ABSTRACT FROM AUTHOR]

Estuarine ecosystem balance typically relies on strong food web interconnectedness dependent on a relatively low number of resident taxa, presenting a potential ecological vulnerability to extreme ecosystem disturbances. Following the Deepwater Horizon (DwH) oil spill disaster of the northern Gulf of Mexico (USA), numerous ecotoxicological studies showed severe species-level impacts of oil exposure on estuarine fish and invertebrates, yet post-spill surveys found little evidence for severe impacts to coastal populations, communities, or food webs. The acknowledgement that several confounding factors may have limited researchers' abilities to detect negative ecosystem-level impacts following the DwH spill drives the need for direct testing of weathered oil exposure effects on estuarine residents with high trophic connectivity. Here, we describe an experiment that examined the influence of previous exposure to four weathered oil concentrations (control: 0.0 L oil m-2; low: 0.1 L oil m-2; moderate: 0.5-1 L oil m-2; high: 3.0 L oil m-2) on foraging rates of the ecologically important Gulf killifish (Fundulus grandis). Following exposure in oiled saltmarsh mesocosms, killifish were allowed to forage on grass shrimp (Palaeomonetes pugio) for up to 21 h. We found that previous exposure to the high oil treatment reduced killifish foraging rate by ~37% on average, compared with no oil control treatment. Previous exposure to the moderate oil treatment showed highly variable foraging rate responses, while low exposure treatment was similar to unexposed responses. Declining foraging rate responses to previous high weathered oil exposure suggests potential oil spill influence on energy transfer between saltmarsh and off-marsh systems. Additionally, foraging rate variability at the moderate level highlights the large degree of intraspecific variability for this sublethal response and indicates this concentration represents a potential threshold of oil exposure influence on killifish foraging. We also found that consumption of gravid vs non-gravid shrimp was not independent of prior oil exposure concentration, as high oil exposure treatment killifish consumed ~3x more gravid shrimp than expected. Our study findings highlight the sublethal effects of prior oil exposure on foraging abilities of ecologically valuable Gulf killifish at realistic oil exposure levels, suggesting that important trophic transfers of energy to off-marsh systems may have been impacted, at least in the short-term, by shoreline oiling at highly localized scales. This study provides support for further experimental testing of oil exposure effects on sublethal behavioral impacts of ecologically important estuarine species, due to the likelihood that some ecological ramifications of DwH on saltmarshes likely went undetected. [ABSTRACT FROM AUTHOR]

Salinity is increasing in many naturally fresh waters because of human activities, and there are concerns about the ecological effects of these increases. Salinity, as with any stressor, can affect organisms both directly and indirectly. In a previous study (Bray et al. 2019), we evaluated the relative importance of direct and indirect effects of increased salinity on stream invertebrates. Chessman (2021) criticised that study, claiming that the biotic treatments were confounded and did not directly test the hypotheses. Chessman (2021) also conducted a reanalysis of the data. We show through the analysis of new data that our biotic treatments were not confounded and that the conclusions made by Chessman (2021) were probably a consequence of the low statistical power of his analysis. Consequently, we argue that Chessman's (2021) comments do not substantively alter the conclusions of our study, and we provide more evidence to support the conclusions of our previous publication. The study of biota–stressor interactions is increasingly relevant to a wide range of global ecosystems. There is a need to develop tractable experimental and survey designs that address these problems, and we identify further avenues for study of these complex issues. We respond to criticisms published in Marine and Freshwater Research on a paper of ours published in another journal on the relative importance of direct and indirect effects of salinity on stream invertebrates. We also present new data to support our conclusions and discuss how the question we sought to address can be advanced. [ABSTRACT FROM AUTHOR]

Oiling scenarios following spills vary in concentration and usually can affect large coastal areas. Consequently, this research evaluated different crude oil concentrations (10, 40, and 80 mg L−1) on the nearshore phytoplanktonic community in the southern Gulf of Mexico. This experiment was carried out for ten days using eight units of 2500 L each; factors monitored included shifts in phytoplankton composition, physicochemical parameters and the culturable bacterial abundance of heterotrophic and hydrocarbonoclastic groups. The temperature, salinity, and nutrient concentrations measured were within the ranges previously reported for Yucatan Peninsula waters. The total hydrocarbon concentration (TPH) in the control at T0 indicated the presence of hydrocarbons (PAHs 0.80 μg L−1, aliphatics 7.83 μg L−1 and UCM 184.09 μg L−1). At T0, the phytoplankton community showed a similar assemblage structure and composition in all treatments. At T10, the community composition remained heterogeneous in the control, in agreement with previous reports for the area. However, for oiled treatments, Bacillariophyceae dominated at T10. Hydrocarbonoclastic bacteria were associated with oiled treatments throughout the experiment, while heterotrophic bacteria were associated with control conditions. Our results agreed with previous works at the taxonomic level showing the presence of Bacillariophyceae and Dinophyceae in oil-related treatments, where these groups showed the major interactions in co-occurrence networks. In contrast, Chlorophyceae showed the key node in the co-occurrence network for the control. This study aims to contribute to knowledge on phytoplankton community shifts during a crude oil spill in subtropical oligotrophic regions. [ABSTRACT FROM AUTHOR]