180 results on '"Darvill, Alan G."'
Search Results
152. Selective degradation of the glycosyluroic acid residues of complex carbohydrates by lithium dissolved in ethylenediamine
- Author
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Lau, James M., primary, McNeil, Michael, additional, Darvill, Alan G., additional, and Albersheim, Peter, additional
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- 1987
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153. Host-Pathogen Interactions
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Davis, Keith R., primary, Darvill, Alan G., additional, Albersheim, Peter, additional, and Dell, Anne, additional
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- 1986
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154. Oligosaccharins: Regulatory Molecules in Plants
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Albersheim, Peter, primary, Darvill, Alan G., additional, Davis, Keith R., additional, Doares, Steven H., additional, Gollin, David J., additional, O'Neill, Roger, additional, Toubart, Patrick R., additional, and York, William S., additional
- Published
- 1988
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155. Characterization of a structurally complex heptasaccharide isolated from the pectic polysaccharide rhamnogalacturonan II
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Spellman, Michael W., primary, McNeil, Michael, additional, Darvill, Alan G., additional, Albersheim, Peter, additional, and Dell, Anne, additional
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- 1983
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156. 3-deoxy-d-manno-2-octulosonic acid (KDO) is a component of rhamnogalacturonan II, a pectic polysaccharide in the primary cell walls of plants
- Author
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York, William S., primary, Darvill, Alan G., additional, McNeil, Michael, additional, and Albersheim, Peter, additional
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- 1985
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157. Rhamnogalacturonan I, a pectic polysaccharide that is a component of monocot cell-walls
- Author
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Thomas, Jerry R., primary, Darvill, Alan G., additional, and Albersheim, Peter, additional
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- 1989
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158. Structure of Plant Cell Walls
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Darvill, Janet E., primary, McNeil, Michael, additional, Darvill, Alan G., additional, and Albersheim, Peter, additional
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- 1980
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159. Host-Pathogen Interactions
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Yamazaki, Noboru, primary, Fry, Stephen C., additional, Darvill, Alan G., additional, and Albersheim, Peter, additional
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- 1983
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160. Rhamnogalacturonan-II, a pectic polysaccharide in the walls of growing plant cell, forms a dimer that is covalently cross-linked by a borate ester. In vitroconditions for the formation and hydrolysis of the dimer.
- Author
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O'Neill, Malcolm A., Warrenfeltz, Dennis, Kates, Keith, Pellerin, Patrice, Doco, Thierry, Darvill, Alan G., and Albersheim, Peter
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- 1997
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161. Identification of an endo-β-1,4-D-Xylanase from Magnaporthe grisea by Gene Knockout Analysis, Purification, and Heterologous Expression.
- Author
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Sheng-Cheng Wu, Halley, Jeffrey E., Luttig, Christopher, Fernekes, Linda M., Gutiérrez-Sanchez, Gerardo, Darvill, Alan G., and Albersheim, Peter
- Subjects
- *
PYRICULARIA grisea , *ASCOMYCETES , *ENZYMES , *PROTEINS , *HOST-parasite relationships , *LIQUID chromatography , *XYLANASES , *GENES , *AMINO acid sequence - Abstract
Magnaporthe grisea, a destructive ascomycetous pathogen of rice, secretes cell wall-degrading enzymes into a culture medium containing purified rice cell walls as the sole carbon source. From M. grisea grown under the culture conditions described here, we have identified an expressed sequenced tag, XYL-6, a gene that is also expressed in M. grisea-infected rice leaves 24 h postinoculation with conidia. This gene encodes a protein about 65% similar to endo-β-1,4-D-glycanases within glycoside hydrolase family GH10. A M. grisea knockout mutant for XYL-6 was created, and it was shown to be as virulent as the parent strain in infecting the rice host. The proteins secreted by the parent strain and by the xyl-6Δ mutant were each fractionated by liquid chromatography, and the collected fractions were assayed for endo-β-1,4-D-glucanase or endo-β-1,4-D-xylanase activities. Two protein-containing peaks with endo-β-1,4-D-xylanase activity secreted by the parent strain are not detectable in the column eluant of the proteins secreted by the mutant. The two endoxylanases (XYL-6α and XYL-6β) from the parent were each purified to homogeneity. N-terminal amino acid sequencing indicated that XYL-6α is a fragment of XYL-6β and that XYL-6β is identical to the deduced protein sequence encoded by the XYL-6 gene. Finally, XYL-6 was introduced into Pichia pastoris for heterologous expression, which resulted in the purification of a fusion protein, XYL-6H, from the Pichia pastoris culture filtrate. XYL-6H is active in cleaving arabinoxylan. These experiments unequivocally established that the XYL-6 gene encodes a secreted endo-β-1,4-D-xylanase. [ABSTRACT FROM AUTHOR]
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- 2006
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162. Arabidopsis Fragile Fiber8, Which Encodes a Putative Glucuronyltransferase, Is Essential for Normal Secondary Wall Synthesis.
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Zhong, Ruiqin, Peña, Maria J., Gong-Ke Zhou, Nairn, C. Joseph, Wood-Jones, Alicia, Richardson, Elizabeth A., Morrison III, W. Herbert, Darvill, Alan G., York, William s., and Zheng-Hua Ye
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DICOTYLEDONS , *BIOSYNTHESIS , *ARABIDOPSIS thaliana , *BIOCHEMICAL engineering , *GENETIC mutation , *BIOCHEMISTRY - Abstract
Secondary walls in vessels and fibers of dicotyledonous plants are mainly composed of cellulose, xylan, and lignin. Although genes involved in biosynthesis of cellulose and lignin have been intensively studied, little is known about genes participating in xylan synthesis. We found that Arabidopsis thaliana fragile fiber8 (fra8) is defective in xylan synthesis. The fra8 mutation caused a dramatic reduction in fiber wall thickness and a decrease in stem strength. FRA8 was found to encode a member of glycosyltransferase family 47 and exhibits high sequence similarity to tobacco (Nicotiana plumbaginifolia) pectin glucuronyltransferase. FRA8 is expressed specifically in developing vessels and fiber cells, and FRA8 is targeted to Golgi. Comparative analyses of cell wall polysaccharide fractions from fra8 and wild-type stems showed that the xylan and cellulose contents are drastically reduced in fra8, whereas xyloglucan and pectin are elevated. Further structural analysis of cell walls revealed that although wild-type xylans contain both glucuronic acid and 4-O-methylglucuronic acid residues, xylans from fra8 retain only 4-O-methylglucuronic acid, indicating that the fra8 mutation results in a specific defect in the addition of glucuronic acid residues onto xylans. These findings suggest that FRA8 is a glucuronyltransferase involved in the biosynthesis of glucuronoxylan during secondary wall formation. [ABSTRACT FROM AUTHOR]
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- 2005
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163. Characterization of a tomato protein that inhibits a xyloglucan-specific endoglucanase.
- Author
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Qin, Qiang, Bergmann, Carl W., Rose, Jocelyn K. C., Saladie, Montserrat, Kolli, V. S. Kumar, Albersheim, Peter, Darvill, Alan G., and York, William S.
- Subjects
- *
TOMATOES , *PROTEINS , *PLANT proteins , *CELLULASE , *PHYTOPATHOGENIC microorganisms - Abstract
Summary A basic, 51 kDa protein was purified from suspension-cultured tomato and shown to inhibit the hydrolytic activity of a xyloglucan-specific endoglucanase (XEG) from the fungus Aspergillus aculeatus . The tomato (Lycopersicon esculentum ) protein, termed XEG inhibitor protein (XEGIP), inhibits XEG activity by forming a 1 : 1 protein:protein complex with a K i ≈ 0.5 nm. To our knowledge, XEGIP is the first reported proteinaceous inhibitor of any endo-β-1,4-glucanase, including the cellulases. The cDNA encoding XEGIP was cloned and sequenced. Database analysis revealed homology with carrot extracellular dermal glycoprotein (EDGP), which has a putative role in plant defense. XEGIP also has sequence similarity to ESTs from a broad range of plant species, suggesting that XEGIP- like genes are widely distributed in the plant kingdom. Although Southern analysis detected only a single XEGIP gene in tomato, at least five other XEGIP -like tomato sequences have been identified. Similar small families of XEGIP-like sequences are present in other plants, including Arabidopsis. XEGIP also has some sequence similarity to two previously characterized proteins, basic globulin 7S protein from soybean and conglutin γ from lupin. Several amino acids in the XEGIP sequence, notably 8 of the 12 cysteines, are generally conserved in all the XEGIP-like proteins we have encountered, suggesting a fundamental structural similarity. Northern analysis revealed that XEGIP is widely expressed in tomato vegetative tissues and is present in expanding and maturing fruit, but is downregulated during ripening. [ABSTRACT FROM AUTHOR]
- Published
- 2003
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164. Galactose-depleted xyloglucan is dysfunctional and leads to dwarfism in Arabidopsis.
- Author
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Kong Y, Peña MJ, Renna L, Avci U, Pattathil S, Tuomivaara ST, Li X, Reiter WD, Brandizzi F, Hahn MG, Darvill AG, York WS, and O'Neill MA
- Subjects
- Arabidopsis genetics, Arabidopsis growth & development, Arabidopsis Proteins genetics, Cell Wall chemistry, Galactosyltransferases genetics, Glucans chemistry, Inflorescence genetics, Inflorescence growth & development, Inflorescence metabolism, Mutation, Pectins metabolism, Phenotype, Plant Leaves genetics, Plant Leaves growth & development, Plant Leaves metabolism, Plant Stems genetics, Plant Stems growth & development, Plant Stems metabolism, Polysaccharides metabolism, Xylans chemistry, Arabidopsis metabolism, Arabidopsis Proteins metabolism, Galactose metabolism, Galactosyltransferases metabolism, Glucans metabolism, Xylans metabolism
- Abstract
Xyloglucan is a polysaccharide that has important roles in the formation and function of the walls that surround growing land plant cells. Many of these plants synthesize xyloglucan that contains galactose in two different side chains (L and F), which exist in distinct molecular environments. However, little is known about the contribution of these side chains to xyloglucan function. Here, we show that Arabidopsis (Arabidopsis thaliana) mutants devoid of the F side chain galactosyltransferase MURUS3 (MUR3) form xyloglucan that lacks F side chains and contains much less galactosylated xylose than its wild-type counterpart. The galactose-depleted xyloglucan is dysfunctional, as it leads to mutants that are dwarfed with curled rosette leaves, short petioles, and short inflorescence stems. Moreover, cell wall matrix polysaccharides, including xyloglucan and pectin, are not properly secreted and instead accumulate within intracellular aggregates. Near-normal growth is restored by generating mur3 mutants that produce no detectable amounts of xyloglucan. Thus, cellular processes are affected more by the presence of the dysfunctional xyloglucan than by eliminating xyloglucan altogether. To identify structural features responsible for xyloglucan dysfunction, xyloglucan structure was modified in situ by generating mur3 mutants that lack specific xyloglucan xylosyltransferases (XXTs) or that overexpress the XYLOGLUCAN L-SIDE CHAIN GALACTOSYLTRANSFERASE2 (XLT2) gene. Normal growth was restored in the mur3-3 mutant overexpressing XLT2 and in mur3-3 xxt double mutants when the dysfunctional xyloglucan was modified by doubling the amounts of galactosylated side chains. Our study assigns a role for galactosylation in normal xyloglucan function and demonstrates that altering xyloglucan side chain structure disturbs diverse cellular and physiological processes., (© 2015 American Society of Plant Biologists. All Rights Reserved.)
- Published
- 2015
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165. 4-O-methylation of glucuronic acid in Arabidopsis glucuronoxylan is catalyzed by a domain of unknown function family 579 protein.
- Author
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Urbanowicz BR, Peña MJ, Ratnaparkhe S, Avci U, Backe J, Steet HF, Foston M, Li H, O'Neill MA, Ragauskas AJ, Darvill AG, Wyman C, Gilbert HJ, and York WS
- Subjects
- Arabidopsis genetics, Arabidopsis Proteins chemistry, Arabidopsis Proteins genetics, Catalysis, Cations metabolism, Cell Wall enzymology, Ethers metabolism, Golgi Apparatus metabolism, Lignin metabolism, Methylation, Methyltransferases chemistry, Methyltransferases genetics, Mutagenesis physiology, Polysaccharides metabolism, Protein Structure, Tertiary physiology, Xylans biosynthesis, Arabidopsis enzymology, Arabidopsis Proteins metabolism, Glucuronic Acid metabolism, Methyltransferases metabolism, Xylans metabolism
- Abstract
The hemicellulose 4-O-methyl glucuronoxylan is one of the principle components present in the secondary cell walls of eudicotyledonous plants. However, the biochemical mechanisms leading to the formation of this polysaccharide and the effects of modulating its structure on the physical properties of the cell wall are poorly understood. We have identified and functionally characterized an Arabidopsis glucuronoxylan methyltransferase (GXMT) that catalyzes 4-O-methylation of the glucuronic acid substituents of this polysaccharide. AtGXMT1, which was previously classified as a domain of unknown function (DUF) 579 protein, specifically transfers the methyl group from S-adenosyl-L-methionine to O-4 of α-D-glucopyranosyluronic acid residues that are linked to O-2 of the xylan backbone. Biochemical characterization of the recombinant enzyme indicates that GXMT1 is localized in the Golgi apparatus and requires Co(2+) for optimal activity in vitro. Plants lacking GXMT1 synthesize glucuronoxylan in which the degree of 4-O-methylation is reduced by 75%. This result is correlated to a change in lignin monomer composition and an increase in glucuronoxylan release during hydrothermal treatment of secondary cell walls. We propose that the DUF579 proteins constitute a previously undescribed family of cation-dependent, polysaccharide-specific O-methyl-transferases. This knowledge provides new opportunities to selectively manipulate polysaccharide O-methylation and extends the portfolio of structural targets that can be modified either alone or in combination to modulate biopolymer interactions in the plant cell wall.
- Published
- 2012
- Full Text
- View/download PDF
166. The ability of land plants to synthesize glucuronoxylans predates the evolution of tracheophytes.
- Author
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Kulkarni AR, Peña MJ, Avci U, Mazumder K, Urbanowicz BR, Pattathil S, Yin Y, O'Neill MA, Roberts AW, Hahn MG, Xu Y, Darvill AG, and York WS
- Subjects
- Bryopsida cytology, Bryopsida enzymology, Bryopsida genetics, Carbohydrate Conformation, Cell Wall metabolism, Ferns metabolism, Genome, Plant, Glucuronates chemistry, Glycosyltransferases genetics, Oligosaccharides chemistry, Phylogeny, Plant Leaves cytology, Plant Leaves metabolism, Plant Proteins genetics, Plant Vascular Bundle genetics, Plants anatomy & histology, Plants genetics, Plants metabolism, Bryopsida metabolism, Evolution, Molecular, Ferns genetics, Xylans biosynthesis
- Abstract
Glucuronoxylans with a backbone of 1,4-linked β-D-xylosyl residues are ubiquitous in the secondary walls of gymnosperms and angiosperms. Xylans have been reported to be present in hornwort cell walls, but their structures have not been determined. In contrast, the presence of xylans in the cell walls of mosses and liverworts remains a subject of debate. Here we present data that unequivocally establishes that the cell walls of leafy tissue and axillary hair cells of the moss Physcomitrella patens contain a glucuronoxylan that is structurally similar to glucuronoxylans in the secondary cell walls of vascular plants. Some of the 1,4-linked β-D-xylopyranosyl residues in the backbone of this glucuronoxylan bear an α-D-glucosyluronic acid (GlcpA) sidechain at O-2. In contrast, the lycopodiophyte Selaginella kraussiana synthesizes a glucuronoxylan substituted with 4-O-Me-α-D-GlcpA sidechains, as do many hardwood species. The monilophyte Equisetum hyemale produces a glucuronoxylan with both 4-O-Me-α-D-GlcpA and α-D-GlcpA sidechains, as does Arabidopsis. The seedless plant glucuronoxylans contain no discernible amounts of the reducing-end sequence that is characteristic of gymnosperm and eudicot xylans. Phylogenetic studies showed that the P. patens genome contains genes with high sequence similarity to Arabidopsis CAZy family GT8, GT43 and GT47 glycosyltransferases that are likely involved in xylan synthesis. We conclude that mosses synthesize glucuronoxylan that is structurally similar to the glucuronoxylans present in the secondary cell walls of lycopodiophytes, monilophytes, and many seed-bearing plants, and that several of the glycosyltransferases required for glucuronoxylan synthesis evolved before the evolution of tracheophytes.
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- 2012
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167. A Cdc42 ortholog is required for penetration and virulence of Magnaporthe grisea.
- Author
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Zheng W, Zhao Z, Chen J, Liu W, Ke H, Zhou J, Lu G, Darvill AG, Albersheim P, Wu S, and Wang Z
- Subjects
- Fungal Proteins genetics, Hordeum microbiology, Magnaporthe genetics, Magnaporthe physiology, Oryza microbiology, Sequence Deletion, Virulence, cdc42 GTP-Binding Protein genetics, Fungal Proteins metabolism, Magnaporthe enzymology, Magnaporthe pathogenicity, Plant Diseases microbiology, cdc42 GTP-Binding Protein metabolism
- Abstract
Cdc42, a member of the Rho-family small GTP-binding proteins, is a pivotal signaling switch that cycles between active GTP-bound and inactive GDP-bound forms, controlling actin cytoskeleton organization and cell polarity. In this report, we show that MgCdc42, a Cdc42 ortholog in Magnaporthe grisea, is required for its plant penetration. Consequently, the deletion mutants show dramatically decreased virulence to rice due to the arrest of penetration and infectious growth, which may be attributed to the defect of turgor and superoxide generation during the appressorial development in Mgcdc42 deletion mutants. In addition, the mutants also exhibit pleotropic defects including gherkin-shaped conidia, delayed germination as well as decreased sporulation. Furthermore, dominant negative mutation leads to a similar phenotype to that of the deletion mutants, lending further support to the conclusion that MgCdc42 is required for the penetration and virulence of M. grisea.
- Published
- 2009
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168. Moss and liverwort xyloglucans contain galacturonic acid and are structurally distinct from the xyloglucans synthesized by hornworts and vascular plants.
- Author
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Peña MJ, Darvill AG, Eberhard S, York WS, and O'Neill MA
- Subjects
- Anthocerotophyta metabolism, Bryophyta metabolism, Carbohydrate Sequence, Cell Wall chemistry, Glucans biosynthesis, Glucans genetics, Hepatophyta metabolism, Molecular Sequence Data, Phylogeny, Spectrometry, Mass, Electrospray Ionization, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Xylans biosynthesis, Xylans genetics, Glucans chemistry, Hexuronic Acids chemistry, Plants metabolism, Xylans chemistry
- Abstract
Xyloglucan is a well-characterized hemicellulosic polysaccharide that is present in the cell walls of all seed-bearing plants. The cell walls of avascular and seedless vascular plants are also believed to contain xyloglucan. However, these xyloglucans have not been structurally characterized. This lack of information is an impediment to understanding changes in xyloglucan structure that occurred during land plant evolution. In this study, xyloglucans were isolated from the walls of avascular (liverworts, mosses, and hornworts) and seedless vascular plants (club and spike mosses and ferns and fern allies). Each xyloglucan was fragmented with a xyloglucan-specific endo-glucanase and the resulting oligosaccharides then structurally characterized using NMR spectroscopy, MALDI-TOF and electrospray mass spectrometry, and glycosyl-linkage and glycosyl residue composition analyses. Our data show that xyloglucan is present in the cell walls of all major divisions of land plants and that these xyloglucans have several common structural motifs. However, these polysaccharides are not identical because specific plant groups synthesize xyloglucans with unique structural motifs. For example, the moss Physcomitrella patens and the liverwort Marchantia polymorpha synthesize XXGGG- and XXGG-type xyloglucans, respectively, with sidechains that contain a beta-D-galactosyluronic acid and a branched xylosyl residue. By contrast, hornworts synthesize XXXG-type xyloglucans that are structurally homologous to the xyloglucans synthesized by many seed-bearing and seedless vascular plants. Our results increase our understanding of the evolution, diversity, and function of structural motifs in land-plant xyloglucans and provide support to the proposal that hornworts are sisters to the vascular plants.
- Published
- 2008
- Full Text
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169. The irregular xylem9 mutant is deficient in xylan xylosyltransferase activity.
- Author
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Lee C, O'Neill MA, Tsumuraya Y, Darvill AG, and Ye ZH
- Subjects
- Arabidopsis enzymology, Arabidopsis genetics, Arabidopsis metabolism, Arabidopsis Proteins genetics, Chromatography, High Pressure Liquid, Gene Expression Regulation, Plant, Glucuronosyltransferase genetics, Glucuronosyltransferase metabolism, Glycosyltransferases genetics, Glycosyltransferases metabolism, Molecular Structure, Pentosyltransferases genetics, Plants, Genetically Modified, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Xylans chemistry, UDP Xylose-Protein Xylosyltransferase, Arabidopsis Proteins metabolism, Mutation, Pentosyltransferases metabolism, Xylans metabolism
- Abstract
Xylan is the second most abundant polysaccharide in dicot wood, and thus elucidation of the xylan biosynthetic pathway is required to understand the mechanisms controlling wood formation. Genetic and chemical studies in Arabidopsis have implicated three genes, FRAGILE FIBER8 (FRA8), IRREGULAR XYLEM8 (IRX8) and IRREGULAR XYLEM9 (IRX9), in the biosynthesis of glucuronoxylan (GX), but the biochemical functions of the encoded proteins are not known. In this study, we determined the effect of the fra8, irx8 and irx9 mutations on the activities of xylan xylosyltransferase (XylT) and glucuronyltransferase (GlcAT). We show that microsomes isolated from the stems of wild-type Arabidopsis exhibit XylT and GlcAT activities in the presence of exogenous 1,4-linked beta-d-xylooligomers. Xylooligomers ranging in size from two to six can be used as acceptors by XylT to form xylooligosaccharides with up to 12 xylosyl residues. We provide evidence that the irx9 mutation results in a substantial reduction in XylT activity but has no discernible effect on GlcAT activity. In contrast, neither XylT nor GlcAT activity is affected by fra8 and irx8 mutations. Our results provide biochemical evidence that the irx9 mutation results in a deficiency in xylan XylT activity, thus leading to a defect in the elongation of the xylan backbone.
- Published
- 2007
- Full Text
- View/download PDF
170. Arabidopsis irregular xylem8 and irregular xylem9: implications for the complexity of glucuronoxylan biosynthesis.
- Author
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Peña MJ, Zhong R, Zhou GK, Richardson EA, O'Neill MA, Darvill AG, York WS, and Ye ZH
- Subjects
- Arabidopsis anatomy & histology, Arabidopsis genetics, Arabidopsis Proteins genetics, Carbohydrate Sequence, Cell Wall chemistry, Cell Wall metabolism, Genes, Reporter, Genetic Complementation Test, Glycosyltransferases genetics, Golgi Apparatus metabolism, Molecular Sequence Data, Molecular Weight, Pentosyltransferases genetics, Phenotype, Plant Roots cytology, Plant Roots metabolism, Recombinant Fusion Proteins genetics, Recombinant Fusion Proteins metabolism, Xylans chemistry, Xylem chemistry, Xylem metabolism, Arabidopsis metabolism, Arabidopsis Proteins metabolism, Glycosyltransferases metabolism, Pentosyltransferases metabolism, Xylans biosynthesis
- Abstract
Mutations of Arabidopsis thaliana IRREGULAR XYLEM8 (IRX8) and IRX9 were previously shown to cause a collapsed xylem phenotype and decreases in xylose and cellulose in cell walls. In this study, we characterized IRX8 and IRX9 and performed chemical and structural analyses of glucuronoxylan (GX) from irx8 and irx9 plants. IRX8 and IRX9 are expressed specifically in cells undergoing secondary wall thickening, and their encoded proteins are targeted to the Golgi, where GX is synthesized. 1H-NMR spectroscopy showed that the reducing end of Arabidopsis GX contains the glycosyl sequence 4-beta-D-Xylp-(1-->4)-beta-D-Xylp-(1-->3)-alpha-L-Rhap-(1-->2)-alpha-D-GalpA-(1-->4)-D-Xylp, which was previously identified in birch (Betula verrucosa) and spruce (Picea abies) GX. This indicates that the reducing end structure of GXs is evolutionarily conserved in woody and herbaceous plants. This sequence is more abundant in irx9 GX than in the wild type, whereas irx8 and fragile fiber8 (fra8) plants are nearly devoid of it. The number of GX chains increased and the GX chain length decreased in irx9 plants. Conversely, the number of GX chains decreased and the chain length heterodispersity increased in irx8 and fra8 plants. Our results suggest that IRX9 is required for normal GX elongation and indicate roles for IRX8 and FRA8 in the synthesis of the glycosyl sequence at the GX reducing end.
- Published
- 2007
- Full Text
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171. Important new players in secondary wall synthesis.
- Author
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Ye ZH, York WS, and Darvill AG
- Subjects
- Arabidopsis cytology, Arabidopsis genetics, Gene Expression Profiling, Glycosyltransferases genetics, Oligonucleotide Array Sequence Analysis, Populus cytology, Populus genetics, Sequence Homology, Nucleic Acid, Arabidopsis enzymology, Cell Wall metabolism, Glycosyltransferases physiology, Populus enzymology
- Abstract
Secondary walls in wood are the most abundant biomass produced by plants. Understanding how plants make wood is not only of interest in basic plant biology but also has important implications for tree biotechnology. Three recent papers report exciting findings regarding a group of novel glycosyltransferases (GTs) involved in secondary wall synthesis. Because little is known about genes involved in the synthesis of wood polysaccharides other than cellulose, the identification of these GTs is a breakthrough in the molecular dissection of wood formation.
- Published
- 2006
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172. Identification of an endo-beta-1,4-D-xylanase from Magnaporthe grisea by gene knockout analysis, purification, and heterologous expression.
- Author
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Wu SC, Halley JE, Luttig C, Fernekes LM, Gutiérrez-Sanchez G, Darvill AG, and Albersheim P
- Subjects
- Amino Acid Sequence, Base Sequence, DNA, Complementary genetics, DNA, Fungal genetics, Endo-1,4-beta Xylanases isolation & purification, Endo-1,4-beta Xylanases metabolism, Expressed Sequence Tags, Gene Expression, Gene Targeting, Genes, Fungal, Magnaporthe pathogenicity, Molecular Sequence Data, Mutation, Oryza microbiology, Recombinant Fusion Proteins genetics, Recombinant Fusion Proteins isolation & purification, Recombinant Fusion Proteins metabolism, Sequence Homology, Amino Acid, Endo-1,4-beta Xylanases genetics, Magnaporthe enzymology, Magnaporthe genetics
- Abstract
Magnaporthe grisea, a destructive ascomycetous pathogen of rice, secretes cell wall-degrading enzymes into a culture medium containing purified rice cell walls as the sole carbon source. From M. grisea grown under the culture conditions described here, we have identified an expressed sequenced tag, XYL-6, a gene that is also expressed in M. grisea-infected rice leaves 24 h postinoculation with conidia. This gene encodes a protein about 65% similar to endo-beta-1,4-D-glycanases within glycoside hydrolase family GH10. A M. grisea knockout mutant for XYL-6 was created, and it was shown to be as virulent as the parent strain in infecting the rice host. The proteins secreted by the parent strain and by the xyl-6Delta mutant were each fractionated by liquid chromatography, and the collected fractions were assayed for endo-beta-1,4-D-glucanase or endo-beta-1,4-D-xylanase activities. Two protein-containing peaks with endo-beta-1,4-D-xylanase activity secreted by the parent strain are not detectable in the column eluant of the proteins secreted by the mutant. The two endoxylanases (XYL-6alpha and XYL-6beta) from the parent were each purified to homogeneity. N-terminal amino acid sequencing indicated that XYL-6alpha is a fragment of XYL-6beta and that XYL-6beta is identical to the deduced protein sequence encoded by the XYL-6 gene. Finally, XYL-6 was introduced into Pichia pastoris for heterologous expression, which resulted in the purification of a fusion protein, XYL-6H, from the Pichia pastoris culture filtrate. XYL-6H is active in cleaving arabinoxylan. These experiments unequivocally established that the XYL-6 gene encodes a secreted endo-beta-1,4-D-xylanase.
- Published
- 2006
- Full Text
- View/download PDF
173. NMR characterization of endogenously O-acetylated oligosaccharides isolated from tomato (Lycopersicon esculentum) xyloglucan.
- Author
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Jia Z, Cash M, Darvill AG, and York WS
- Subjects
- Carbohydrate Conformation, Carbohydrate Sequence, Magnetic Resonance Spectroscopy, Molecular Sequence Data, Polysaccharides chemistry, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Spectrophotometry, Glucans chemistry, Solanum lycopersicum metabolism, Oligosaccharides chemistry
- Abstract
Eight oligosaccharide subunits, generated by endoglucanase treatment of the plant polysaccharide xyloglucan isolated from the culture filtrate of suspension-cultured tomato (Lycopersicon esculentum) cells, were structurally characterized by NMR spectroscopy. These oligosaccharides, which contain up to three endogenous O-acetyl substituents, consist of a cellotetraose core with alpha-D-Xylp residues at O-6 of the two beta-D-Glcp residues at the non-reducing end of the core. Some of the alpha-D-Xylp residues themselves bear either an alpha-L-Arap or a beta-D-Galp residue at O-2. O-Acetyl substituents are located at O-6 of the unbranched (internal) beta-D-Glcp residue, O-6 of the terminal beta-D-Galp residue, and/or at O-5 of the terminal alpha-L-Arap residue. Structural assignments were facilitated by long-range scalar coupling interactions observed in the high-resolution gCOSY spectra of the oligosaccharides. The presence of five-bond scalar coupling constants in the gCOSY spectra provides a direct method of assigning O-acetylation sites, which may prove generally useful in the analysis of O-acylated glycans. Spectral assignment of these endogenously O-acetylated oligosaccharides makes it possible to deduce correlations between their structural features and the chemical shifts of diagnostic resonances in their NMR spectra.
- Published
- 2005
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- View/download PDF
174. l-Galactose replaces l-fucose in the pectic polysaccharide rhamnogalacturonan II synthesized by the l-fucose-deficient mur1 Arabidopsis mutant.
- Author
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Reuhs BL, Glenn J, Stephens SB, Kim JS, Christie DB, Glushka JG, Zablackis E, Albersheim P, Darvill AG, and O'Neill MA
- Subjects
- Arabidopsis chemistry, Carbohydrate Conformation, Carbohydrate Sequence, Cell Wall chemistry, Cells, Cultured, Fucose analogs & derivatives, Galactose analogs & derivatives, Hydrogen-Ion Concentration, Pectins metabolism, Plant Leaves chemistry, Plant Leaves metabolism, Spectrometry, Mass, Electrospray Ionization, Arabidopsis genetics, Arabidopsis Proteins genetics, Fucose analysis, Galactose analysis, Mutation, Pectins chemistry
- Abstract
Arabidopsis thaliana mur1 is a dwarf mutant with altered cell-wall properties, in which l-fucose is partially replaced by l-galactose in the xyloglucan and glycoproteins. We found that the mur1 mutation also affects the primary structure of the pectic polysaccharide rhamnogalacturonan II (RG-II). In mur1 RG-II a non-reducing terminal 2- O-methyl l-galactosyl residue and a 3,4-linked l-galactosyl residue replace the non-reducing terminal 2- O-methyl l-fucosyl residue and the 3,4-linked l-fucosyl residue, respectively, that are present in wild-type RG-II. Furthermore, we found that a terminal non-reducing l-galactosyl residue, rather than the previously reported d-galactosyl residue, is present on the 2- O-methyl xylose-containing side chain of RG-II in both wild type and mur1 plants. Approximately 95% of the RG-II from wild type and mur1 plants is solubilized as a high-molecular-weight (>100 kDa) complex, by treating walls with aqueous potassium phosphate. The molecular mass of RG-II in this complex was reduced to 5-10 kDa by treatment with endopolygalacturonase, providing additional evidence that RG-II is covalently linked to homogalacturonan. The results of this study provide additional information on the structure of RG-II and the role of this pectic polysaccharide in the plant cell wall.
- Published
- 2004
- Full Text
- View/download PDF
175. Rhamnogalacturonan II: structure and function of a borate cross-linked cell wall pectic polysaccharide.
- Author
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O'Neill MA, Ishii T, Albersheim P, and Darvill AG
- Subjects
- Cycadopsida genetics, Genetic Variation, Magnoliopsida genetics, Pectins genetics, Polysaccharides chemistry, Cycadopsida metabolism, Magnoliopsida metabolism, Pectins chemistry
- Abstract
Rhamnogalacturonan II (RG-II) is a structurally complex pectic polysaccharide that was first identified in 1978 as a quantitatively minor component of suspension-cultured sycamore cell walls. Subsequent studies have shown that RG-II is present in the primary walls of angiosperms, gymnosperms, lycophytes, and pteridophytes and that its glycosyl sequence is conserved in all vascular plants examined to date. This is remarkable because RG-II is composed of at least 12 different glycosyl residues linked together by more than 20 different glycosidic linkages. However, only a few of the genes and proteins required for RG-II biosynthesis have been identified. The demonstration that RG-II exists in primary walls as a dimer that is covalently cross-linked by a borate diester was a major advance in our understanding of the structure and function of this pectic polysaccharide. Dimer formation results in the cross-linking of the two homogalacturonan chains upon which the RG-II molecules are constructed and is required for the formation of a three-dimensional pectic network in muro. This network contributes to the mechanical properties of the primary wall and is required for normal plant growth and development. Indeed, changes in wall properties that result from decreased borate cross-linking of pectin may lead to many of the symptoms associated with boron deficiency in plants.
- Published
- 2004
- Full Text
- View/download PDF
176. Structure of the xyloglucan produced by suspension-cultured tomato cells.
- Author
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Jia Z, Qin Q, Darvill AG, and York WS
- Subjects
- Carbohydrate Sequence, Cells, Cultured, Cellulase metabolism, Chromatography, High Pressure Liquid, Glucans isolation & purification, Glucans metabolism, Solanum lycopersicum cytology, Magnetic Resonance Spectroscopy methods, Molecular Sequence Data, Oligosaccharides analysis, Oligosaccharides isolation & purification, Polysaccharides metabolism, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization methods, Sugar Alcohols analysis, Sugar Alcohols isolation & purification, Xylans isolation & purification, Xylans metabolism, Glucans chemistry, Solanum lycopersicum chemistry, Xylans chemistry
- Abstract
The xyloglucan secreted by suspension-cultured tomato (Lycopersicon esculentum) cells was structurally characterized by analysis of the oligosaccharides generated by treating the polysaccharide with a xyloglucan-specific endoglucanase (XEG). These oligosaccharide subunits were chemically reduced to form the corresponding oligoglycosyl alditols, which were isolated by high-performance liquid chromatography (HPLC). Thirteen of the oligoglycosyl alditols were structurally characterized by a combination of matrix-assisted laser-desorption ionization mass spectrometry and two-dimensional nuclear magnetic resonance (NMR) spectroscopy. Nine of the oligoglycosyl alditols (GXGGol, XXGGol, GSGGol, XSGGol, LXGGol, XTGGol, LSGGol, LLGGol, and LTGGol, [see, Fry, S.C.; York, W.S., et al., Physiologia Plantarum 1993, 89, 1-3, for this nomenclature]) are derived from oligosaccharide subunits that have a cellotetraose backbone. Very small amounts of oligoglycosyl alditols (XGGol, XGGXXGGol, XXGGXGGol, and XGGXSGGol) derived from oligosaccharide subunits that have a cellotriose or celloheptaose backbone were also purified and characterized. The results demonstrate that the xyloglucan secreted by suspension-cultured tomato cells is very complex and is composed predominantly of 'XXGG-type' subunits with a cellotetraose backbone. The rigorous characterization of the oligoglycosyl alditols and assignment of their 1H and 13C NMR spectra constitute a robust data set that can be used as the basis for rapid and accurate structural profiling of xyloglucans produced by Solanaceous plant species and the characterization of enzymes involved in the synthesis, modification, and breakdown of these polysaccharides.
- Published
- 2003
- Full Text
- View/download PDF
177. Distribution of fucose-containing xyloglucans in cell walls of the mur1 mutant of Arabidopsis.
- Author
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Freshour G, Bonin CP, Reiter WD, Albersheim P, Darvill AG, and Hahn MG
- Subjects
- Arabidopsis cytology, Gene Expression Regulation, Developmental, Gene Expression Regulation, Plant, Plant Structures chemistry, Plant Structures cytology, Plant Structures metabolism, Seedlings chemistry, Seedlings cytology, Seedlings genetics, Arabidopsis chemistry, Arabidopsis genetics, Arabidopsis Proteins genetics, Cell Wall chemistry, Fucose analysis, Glucans, Mutation, Polysaccharides analysis, Xylans
- Abstract
The monoclonal antibody, CCRC-M1, which recognizes a fucose (Fuc)-containing epitope found principally in the cell wall polysaccharide xyloglucan, was used to determine the distribution of this epitope throughout the mur1 mutant of Arabidopsis. Immunofluorescent labeling of whole seedlings revealed that mur1 root hairs are stained heavily by CCRC-M1, whereas the body of the root remains unstained or only lightly stained. Immunogold labeling showed that CCRC-M1 labeling within the mur1 root is specific to particular cell walls and cell types. CCRC-M1 labels all cell walls at the apex of primary roots 2 d and older and the apices of mature lateral roots, but does not bind to cell walls in lateral root initials. Labeling with CCRC-M1 decreases in mur1 root cells that are undergoing rapid elongation growth such that, in the mature portions of primary and lateral roots, only the walls of pericycle cells and the outer walls of epidermal cells are labeled. Growth of the mutant on Fuc-containing media restores wild-type labeling, where all cell walls are labeled by the CCRC-M1 antibody. No labeling was observed in mur1 hypocotyls, shoots, or leaves; stipules are labeled. CCRC-M1 does label pollen grains within anthers and pollen tube walls. These results suggest the Fuc destined for incorporation into xyloglucan is synthesized using one or the other or both isoforms of GDP-D-mannose 4,6-dehydratase, depending on the cell type and/or developmental state of the cell.
- Published
- 2003
- Full Text
- View/download PDF
178. Primary structure of the 2-O-methyl-alpha-L-fucose-containing side chain of the pectic polysaccharide, rhamnogalacturonan II.
- Author
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Glushka JN, Terrell M, York WS, O'Neill MA, Gucwa A, Darvill AG, Albersheim P, and Prestegard JH
- Subjects
- Carbohydrate Conformation, Carbohydrate Sequence, Molecular Sequence Data, Oligosaccharides chemistry, Wine analysis, Fucose analogs & derivatives, Fucose chemistry, Pectins chemistry
- Abstract
A 2-O-methylfucosyl-containing heptasaccharide was released from red wine rhamnogalacturonan II (RG-II) by acid hydrolysis of the glycosidic linkage of the aceryl acid residue (AceA) and purified to homogeneity by size-exclusion and high-performance anion-exchange chromatographies. The primary structure of the heptasaccharide was determined by glycosyl-residue and glycosyl-linkage composition analyses, ESIMS, and by 1H and 13C NMR spectroscopy. The NMR data indicated that the pyranose ring of the 2,3-linked L-arabinosyl residue is conformationally flexible. The L-Arap residue was confirmed to be alpha-linked by NMR analysis of a tetraglycosyl-glycerol fragment, [alpha-L-Arap-(1-->4)-beta-D-Galp-(1-->2)-alpha-L-AcefA-(1-->3)-beta-L-Rhap-(1-->3)-Gro], generated by Smith degradation of RG-II. Our data together with the results of a previous study,(1) establish that the 2-O-Me Fuc-containing nonasaccharide side chain of wine RG-II has the structure (Api [triple bond] apiose): [see structure]. Data are presented to show that in Arabidopsis RG-II the predominant 2-O-MeFuc-containing side chain is a mono-O-acetylated heptasaccharide that lacks the non-reducing terminal beta-L-Araf and the alpha-L-Rhap residue attached to the O-3 of Arap, both of which are present on the wine nonasaccharide.
- Published
- 2003
- Full Text
- View/download PDF
179. Molecular cloning and characterization of glucanase inhibitor proteins: coevolution of a counterdefense mechanism by plant pathogens.
- Author
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Rose JK, Ham KS, Darvill AG, and Albersheim P
- Subjects
- Amino Acid Sequence, Base Sequence, Cloning, Molecular, DNA Primers, Enzyme Inhibitors chemistry, Models, Biological, Molecular Sequence Data, Phylogeny, Plant Proteins chemistry, Plant Proteins pharmacology, Recombinant Proteins chemistry, Recombinant Proteins pharmacology, Sequence Alignment, Sequence Homology, Amino Acid, Surface Plasmon Resonance, Dextranase antagonists & inhibitors, Enzyme Inhibitors pharmacology, Plant Proteins genetics
- Abstract
A characteristic plant response to microbial attack is the production of endo-beta-1,3-glucanases, which are thought to play an important role in plant defense, either directly, through the degradation of beta-1,3/1,6-glucans in the pathogen cell wall, or indirectly, by releasing oligosaccharide elicitors that induce additional plant defenses. We report the sequencing and characterization of a class of proteins, termed glucanase inhibitor proteins (GIPs), that are secreted by the oomycete Phytophthora sojae, a pathogen of soybean, and that specifically inhibit the endoglucanase activity of their plant host. GIPs are homologous with the trypsin class of Ser proteases but are proteolytically nonfunctional because one or more residues of the essential catalytic triad is absent. However, specific structural features are conserved that are characteristic of protein-protein interactions, suggesting a mechanism of action that has not been described previously in plant pathogen studies. We also report the identification of two soybean endoglucanases: EGaseA, which acts as a high-affinity ligand for GIP1; and EGaseB, with which GIP1 does not show any association. In vitro, GIP1 inhibits the EGaseA-mediated release of elicitor-active glucan oligosaccharides from P. sojae cell walls. Furthermore, GIPs and soybean endoglucanases interact in vivo during pathogenesis in soybean roots. GIPs represent a novel counterdefensive weapon used by plant pathogens to suppress a plant defense response and potentially function as important pathogenicity determinants.
- Published
- 2002
- Full Text
- View/download PDF
180. A beta-glucosidase/xylosidase from the phytopathogenic oomycete, Phytophthora infestans.
- Author
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Brunner F, Wirtz W, Rose JK, Darvill AG, Govers F, Scheel D, and Nürnberger T
- Subjects
- Amino Acid Sequence, Animals, Base Sequence, DNA, Fungal analysis, Glucosylceramidase genetics, Humans, Mice, Molecular Sequence Data, Species Specificity, Substrate Specificity, Xylosidases genetics, Xylosidases isolation & purification, beta-Glucosidase genetics, beta-Glucosidase isolation & purification, Bacterial Proteins, Glucosides metabolism, Glycoside Hydrolases metabolism, Hymecromone analogs & derivatives, Hymecromone metabolism, Oomycetes enzymology, Xylosidases metabolism, beta-Glucosidase metabolism
- Abstract
An 85-kDa beta-glucosidase/xylosidase (BGX1) was purified from the axenically grown phytopathogenic oomycete, Phytophthora infestans. The bgx1 gene encodes a predicted 61-kDa protein product which, upon removal of a 21 amino acid leader peptide, accumulates in the apoplastic space. Extensive N-mannosylation accounts for part of the observed molecular mass difference. BGX1 belongs to family 30 of the glycoside hydrolases and is the first such oomycete enzyme deposited in public databases. The bgx1 gene was found in various Phytophthora species, but is apparently absent in species of the related genus, Pythium. Despite significant sequence similarity to human and murine lysosomal glucosylceramidases, BGX1 demonstrated neither glucocerebroside nor galactocerebroside-hydrolyzing activity. The native enzyme exhibited glucohydrolytic activity towards 4-methylumbelliferyl (4-MU) beta-D-glucopyranoside and, to lesser extent, towards 4-MU-D-xylopyranoside, but not towards 4-MU-beta-D-glucopyranoside. BGX1 did not hydrolyze carboxymethyl cellulose, cellotetraose, chitosan or xylan, suggesting high substrate specificity and/or specific cofactor requirements for enzymatic activity.
- Published
- 2002
- Full Text
- View/download PDF
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