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Background: Managers of landscapes dedicated to forest commodity production require information about how practices influence biological diversity. Individual species and communities may be threatened if management practices truncate or simplify forest age classes that are essential for reproduction and survival. For instance, the degradation and loss of complex diverse forest in young age classes have been associated with declines in forest-associated Neotropical migrant bird populations in the Pacific Northwest, USA. These declines may be exacerbated by intensive forest management practices that reduce hardwood and broadleaf shrub cover in order to promote growth of economically valuable tree species in plantations. Methodology and Principal Findings: We used a Bayesian hierarchical model to evaluate relationships between avian species richness and vegetation variables that reflect stand management intensity (primarily via herbicide application) on 212 tree plantations in the Coast Range, Oregon, USA. Specifically, we estimated the influence of broadleaf hardwood vegetation cover, which is reduced through herbicide applications, on bird species richness and individual species occupancy. Our model accounted for imperfect detection. We used average predictive comparisons to quantify the degree of association between vegetation variables and species richness. Both conifer and hardwood cover were positively associated with total species richness, suggesting that these components of forest stand composition may be important predictors of alpha diversity. Estimates of species richness were 35-80% lower when imperfect detection was ignored (depending on covariate values), a result that has critical implications for previous efforts that have examined relationships between forest composition and species richness. Conclusion and Significance: Our results revealed that individual and community responses were positively associated with both conifer and hardwood cover. In our system, patterns of bird community assembly appear to be associated with stand management strategies that retain or increase hardwood vegetation while simultaneously regenerating the conifer cover in commercial tree plantations. [ABSTRACT FROM AUTHOR]

In stream organisms, the landscape affecting intraspecific genetic and phenotypic divergence is comprised of two fundamental components: the stream network and terrestrial matrix. These components are known to differentially influence genetic structure in stream species, but to our knowledge, no study has compared their effects on genetic and phenotypic divergence. We examined how the stream network and terrestrial matrix affect genetic and phenotypic divergence in two stream salamanders, Gyrinophilus porphyriticus and Eurycea bislineata, in the Hubbard Brook Watershed, New Hampshire, USA. On the basis of previous findings and differences in adult terrestriality, we predicted that genetic divergence and phenotypic divergence in body morphology would be correlated in both species, but structured primarily by distance along the stream network in G. porphyriticus, and by overland distance in E. bislineata. Surprisingly, spatial patterns of genetic and phenotypic divergence were not strongly correlated. Genetic divergence, based on amplified DNA fragment length polymorphisms, increased with absolute geographic distance between sites. Phenotypic divergence was unrelated to absolute geographic distance, but related to relative stream vs. overland distances. In G. porphyriticus, phenotypic divergence was low when sites were close by stream distance alone and high when sites were close by overland distance alone. The opposite was true for E. bislineata. These results show that small differences in life history can produce large differences in patterns of intraspecific divergence, and the limitations of landscape genetic data for inferring phenotypic divergence. Our results also underscore the importance of explicitly comparing how terrestrial and aquatic conditions affect spatial patterns of divergence in species with biphasic life cycles. [ABSTRACT FROM AUTHOR]

ABSTRACT Aquatic ecologists are working to develop theory and techniques for analysis of dynamic stream processes and communities of organisms. Such work is critical for the development of conservation plans that are relevant at the scale of entire ecosystems. The stream network is the foundation upon which stream systems are organized. Natural and human disturbances in streams alter the configuration of stream habitats such as pools, riffles, and glides across seasons, decades, or centuries. Thus, native aquatic species have developed mechanisms for adapting to the dynamic configuration of habitats in stream networks., At different spatial scales, stream network structure informs habitat connectivity for aquatic-obligate species. The movement of aquatic species both upstream and downstream is limited by stream channels and may be modified by the downstream flow of water, nutrients, and physical materials such as wood and substrate. Analysing streams as networks offers a realistic and holistic perspective for assessing movement and distribution by freshwater aquatic species in response to life-history needs and environmental conditions., In this study, network analysis was facilitated by automating, in a Geographic Information System, the calculation of network distances and variables that represent spatial configuration. A comparison between traditional instream habitat variables and network variables for juvenile coho salmon ( Oncorhynchus kisutch) in seven sub-basins of Oregon's mid-coast over a 5-year period revealed that network variables perform better at explaining juvenile coho salmon density than instream habitat variables. Moreover, analysis of network distances among seasonal habitats indicates that juvenile coho salmon density may be higher where the distance between critical seasonal habitats is short. This work furthers aquatic conservation, management, and restoration by including analysis of the proximity and connectivity among aquatic freshwater habitats. Published in 2012. This article is a US Government work and is in the public domain in the USA. [ABSTRACT FROM AUTHOR]

There are three key drivers of the biodiversity crisis: (1) the well known existing threats to biodiversity such as habitat loss, invasive pest species and resource exploitation; (2) direct effects of climate-change, such as on coastal and high elevation communities and coral reefs; and (3) the interaction between existing threats and climate-change. The third driver is set to accelerate the biodiversity crisis beyond the impacts of the first and second drivers in isolation. In this review we assess these interactions, and suggest the policy and management responses that are needed to minimise their impacts. Renewed management and policy action that address known threats to biodiversity could substantially diminish the impacts of future climate-change. An appropriate response to climate-change will include a reduction of land clearing, increased habitat restoration using indigenous species, a reduction in the number of exotic species transported between continents or between major regions of endemism, and a reduction in the unsustainable use of natural resources. Achieving these measures requires substantial reform of international, national and regional policy, and the development of new or more effective alliances between scientists, government agencies, non-government organisations and land managers. Furthermore, new management practices and policy are needed that consider shifts in the geographic range of species, and that are responsive to new information acquired from improved research and monitoring programs. The interactions of climate-change with existing threats to biodiversity have the potential to drive many species to extinction, but there is much that can be done now to reduce this risk. [ABSTRACT FROM AUTHOR]

Contents [ABSTRACT FROM AUTHOR]

Current literature suggests that little, if any, research has been conducted in South Africa to determine the impact of alien trout on indigenous amphibian biodiversity. The aim of this study was to establish whether waterfalls in the uKhahlamba Drakensberg Park, South Africa, are seasonally important in conserving indigenous Natal cascade frog Hadromophryne natalensis tadpole populations from the threat of predation by alien rainbow trout Oncorhynchus mykiss and brown trout Salmo trutta at Injesuthi and Monk's Cowl Nature Reserves, respectively. Relative abundances of trout and tadpoles of Natal cascade frogs were assessed after sampling using electrofishing. Habitat templates were compared for above- versus below-waterfall sites. Trout predation is the most likely causative agent for an observed abrupt decline in H. natalensis tadpole abundance occurring below waterfalls. Tadpole abundance in the study was reduced by a factor of 4.69 and 15.71 below the selected waterfalls at Injesuthi and Monk's Cowl in association with O. mykiss and S. trutta populations, respectively. [ABSTRACT FROM PUBLISHER]

Genetically modified (GM) maize containing genes from the soil bacterium Bacillus thuringiensis (Bt) was cultivated on 29% of the total maize production area worldwide in 2009. Most studies to date compare Bt-maize varieties with their near isogenic lines; however, there is little information on the variability of conventional maize breeding lines and how the effects of Bt varieties are ranked within. In our study on the potential risks of Bt-maize varieties, we analyzed tissue quality and compared the effects of ten conventional and GM maize varieties on soil microbiological properties in a replicated climate chamber experiment. All maize varieties were cultivated twice in the same soil microcosm. Shoot yields and soluble C in leaf tissue of Bt varieties were higher than the ones of non- Bt. Soil dehydrogenase activity was reduced by 5% under Bt varieties compared to non- Bt, while most of the other soil microbial properties (soil microbial biomass, basal respiration) showed no significant differences between Bt and non- Bt varieties. The leaves and roots of one Bt variety were decomposed to a greater extent than the ones of its near isogenic line; the conventional breeding lines also showed higher values. Changes in crop and soil parameters were found when comparing the first and the second crops, but the effects of repeated cropping were the same for all tested varieties. For the studied parameters, the variation among non- Bt-maize varieties was similar to the difference between Bt and non- Bt varieties. [ABSTRACT FROM AUTHOR]

Aims: Postfire logging recoups the economic value of timber killed by wildfire, but whether such forest management activity supports or impedes forest recovery in stands differing in structure from historic conditions remains unclear. The aim of this study was to determine the impact of mechanical logging after wildfire on soil bacterial and fungal communities and other measures influencing soil productivity. Methods: We compared soil bacterial and fungal communities and biogeochemical responses of 1) soils compacted, and 2) soils compacted and then subsoiled, to 3) soils receiving no mechanical disturbance, across seven stands, 1-3 years after postfire logging. Results: Compaction decreased plant-available N on average by 27% compared to no mechanical disturbance, while subsoiling decreased plant-available P (Bray) on average by 26% compared to the compacted and non-mechanically disturbed treatments. Neither bacterial nor fungal richness significantly differed among treatments, yet distinct separation by year in both bacterial and fungal community composition corresponded with significant increases in available N and available P between the first and second postharvest year. Conclusions: Results suggest that nutrients critical to soil productivity were reduced by mechanical applications used in timber harvesting, yet soil bacteria and fungi, essential to mediating decomposition and nutrient cycling, appeared resilient to mechanical disturbance. Results of this study contribute to the understanding about impacts of harvesting fire-killed trees and bear consideration along with the recovery potential of a site and the impending risk of future fire in stands with high densities of fire-killed trees. [ABSTRACT FROM AUTHOR]

Techniques that identify forestry-induced changes to streamflow or evaporation are needed to assess available water resources. Equally, there is a growing appreciation that climate cycles may be having a profound impact on the land-surface hydrology. The ability to see forestry-induced change above the effects of climate dynamics, therefore, becomes a critical issue. Paired-catchment analyses have proved very valuable in identifying change, but cannot quantify the relative impacts of climate and land-cover change, and data from adjacent reference basins are not always available. Within this study, we examined whether step changes within single time-series of streamflow or evaporation (P-Q) could be identified without reference to those of a control catchment. The UC-DHR method was used for this analysis, and included a special routine to allow a known change-point (e.g. start of logging) to be specified or alternatively identified by the model. Data from three experimental catchments important for their seminal forestry impact studies were selected for the analyses. The study demonstrated that clear-cutting 29% of the Hore catchment and 40% selective felling of the Berembun basin produced a step change in the discharge trend that was clearly observable above the climate-related dynamics and uncertainty. In contrast, step changes in P-Q following the same selective felling event or following 22% afforestation of the Upper Hodder basin were not larger than the uncertainty bands or magnitude of the inter-annual cycles produced by the climate dynamics, respectively. This demonstrates that while step changes can be observed in single hydrological time-series, errors within the observations can sometimes mask the identification of change. This masking of change is also possible where the longer-term cyclical behaviour in Q or P-Q from natural climate dynamics is large, while the spatial extent of forestry change is small. Copyright © 2011 John Wiley & Sons, Ltd. [ABSTRACT FROM AUTHOR]

Forest canopy herbivores are known to increase rates of nutrient fluxes to the forest floor in a number of temperate and boreal forests, but few studies have measured effects of herbivore-enhanced nutrient fluxes in tropical forests. We simulated herbivore-induced fluxes in a tropical rainforest in Puerto Rico by augmenting greenfall (fresh foliage fragments), frassfall (insect feces), and throughfall (precipitation enriched with foliar leachates) in replicated experimental plots on the forest floor. Background rates of greenfall and frassfall were measured monthly using litterfall collectors and augmented by adding 10× greenfall or 10× frassfall to designated plots. Throughfall fluxes of NH, NO and PO (but not water) were doubled in treatment plots, based on published rates of fluxes of these nutrients in throughfall. Control plots received only background flux rates for these compounds but the same minimum amount of distilled water. We evaluated treatment effects as changes in flux rates for NO, NH and PO, measured as decomposition rate of leaf litter in litterbags and as adsorption in ion-exchange resin bags at the litter-soil interface. Frass addition significantly increased NO and NH fluxes, and frass and throughfall additions significantly reduced decay rate, compared to controls. Reduced decay rate suggests that nitrogen flux was sufficient to inhibit microbial decomposition activity. Our treatments represented fluxes expected from low-moderate herbivore outbreaks and demonstrated that herbivores, at these outbreak levels, increase ecosystem-level N and P fluxes by >30% in this tropical rainforest. [ABSTRACT FROM AUTHOR]

We describe the "landscape trap" concept, whereby entire landscapes are shifted into, and then maintained (trapped) in, a highly compromised structural and functional state as the result of multiple temporal and spatial feedbacks between human and natural disturbance regimes. The landscape trap concept builds on ideas like stable alternative states and other relevant concepts, but it substantively expands the conceptual thinking in a number of unique ways. In this paper, we (I) review the literature to develop the concept of landscape traps, including their general features; (ii) provide a case study as an example of a landscape trap from the mountain ash (Eucalyptus regnans) forests of southeastern Australia; (iii) suggest how landscape traps can be detected before they are irrevocably established; and (iv) present evidence of the generality of landscape traps in different ecosystems worldwide. [ABSTRACT FROM AUTHOR]

Modern agriculture largely relies on the extensive application of agrochemicals, including inorganic fertilizers and pesticides. Indiscriminate, long-term and over-application of pesticides have severe effects on soil ecology that may lead to alterations in or the erosion of beneficial or plant probiotic soil microflora. Weathered soils lose their ability to sustain enhanced production of crops/grains on the same land. However, burgeoning concern about environmental pollution and the sustainable use of cropping land have emphasized inculcation of awareness and the wider application of tools, techniques and products that do not pollute the environment at all or have only meager ecological concerns. This review covers the types of, concerns about and current issues regarding the extensive application of agrochemicals, in particular pesticides, on a variety of microorganisms integrated in successive food chains in the soil food web. [ABSTRACT FROM AUTHOR]

Background: Big environmental disturbances have big ecological effects, yet these are not always what we might expect. Understanding the proximate effects of major disturbances, such as severe wildfires, on individuals, populations and habitats will be essential for understanding how predicted future increases in the frequency of such disturbances will affect ecosystems. However, researchers rarely have access to data from immediately before and after such events. Here we report on the effects of a severe and extensive forest wildfire on mortality, reproductive output and availability of key shelter resources for an arboreal marsupial. We also investigated the behavioural response of individuals to changed shelter resource availability in the post-fire environment. Methodology/Principal Findings: We fitted proximity-logging radiotransmitters to mountain brushtail possums (Trichosurus cunninghami) before, during and after the 2009 wildfires in Victoria, Australia. Surprisingly, we detected no mortality associated with the fire, and despite a significant post-fire decrease in the proportion of females carrying pouch young in the burnt area, there was no short-term post-fire population decline. The major consequence of this fire for mountain brushtail possums was the loss of over 80% of hollow-bearing trees. The types of trees preferred as shelter sites (highly decayed dead standing trees) were those most likely to collapse after fire. Individuals adapted to resource decline by being more flexible in resource selection after the fire, but not by increased resource sharing. Conclusions/Significance: Despite short-term demographic resilience and behavioural adaptation following this fire, the major loss of decayed hollow trees suggests the increased frequency of stand-replacing wildfires predicted under climate change will pose major challenges for shelter resource availability for hollow-dependent fauna. Hollow-bearing trees are typically biological legacies of previous forest generations in post-fire regrowth forests but will cease to be recruited to future regrowth forests if the interval between severe fires becomes too rapid for hollow formation. [ABSTRACT FROM AUTHOR]

Transgenic Bt cotton expresses the Cry1Ac protein from Bacillus thuringiensis, which could influence the plant's capability to host endophytic fungi. The diversity of endophytic fungi in leaves, stems and roots from transgenic (Bt) and its isoline (non-Bt) cotton was evaluated during different plant developmental stages to investigate possible non-target effects of genetically modified cotton on endophytic fungal communities. A total of 17 genera of endophytic fungi were isolated. The most frequently isolated species were Phomopsis archeri from leaves and stems and Phoma destructiva from roots. While the Bt modification had no effect on endophytes, the cotton tissue and the plant developmental stage significantly influenced the diversity and composition of the fungal community. These results represent the first evaluation of the composition of endophytic fungi associated with transgenic cotton plants. [ABSTRACT FROM AUTHOR]

Terrestrial carnivores typically have large home ranges and exist at low population densities, thus presenting challenges to wildlife researchers. We employed multiple, noninvasive survey methods-scat detection dogs, remote cameras, and hair snares-to collect detection-nondetection data for elusive American black bears ( Ursus americanus), fishers ( Martes pennanti), and bobcats ( Lynx rufus) throughout the rugged Vermont landscape. We analyzed these data using occupancy modeling that explicitly incorporated detectability as well as habitat and landscape variables. For black bears, percentage of forested land within 5 km of survey sites was an important positive predictor of occupancy, and percentage of human developed land within 5 km was a negative predictor. Although the relationship was less clear for bobcats, occupancy appeared positively related to the percentage of both mixed forest and forested wetland habitat within 1 km of survey sites. The relationship between specific covariates and fisher occupancy was unclear, with no specific habitat or landscape variables directly related to occupancy. For all species, we used model averaging to predict occurrence across the study area. Receiver operating characteristic (ROC) analyses of our black bear and fisher models suggested that occupancy modeling efforts with data from noninvasive surveys could be useful for carnivore conservation and management, as they provide insights into habitat use at the regional and landscape scale without requiring capture or direct observation of study species. [ABSTRACT FROM AUTHOR]

Household bulky waste, defined as 'any large items you would normally take with you when moving house' constitutes 56% of fly-tipped household waste. Although fly-tipping, especially the disposal of the bulky household waste stream by way of fly-tipping, is little studied, it causes a wide range of social and environmental problems. Legitimate means of disposal available to householders include council collection, household waste recycling centres, private companies and charities. This study was aimed at identifying the key drivers for fly-tipping bulky wastes using the county of Hampshire, UK as a case study area. The study indicates that fly-tipping of bulky items is a significant problem, particularly in areas of high deprivation and population density, and areas with a large proportion of rented accommodation. The findings also illustrate the distinct service requirements of different age groups and that no single, generic approach to bulky waste management can be applied universally. [ABSTRACT FROM AUTHOR]

Transgenic insect-resistant cotton expressing the Cry1Ac and/or CpTI protein has been released into the environment for commercial cultivation for over a decade in China. In this consecutive 3-year field study (2007-2009), we characterized the microbial populations in two different transgenic cotton fields and one non-transgenic cotton field to assess the environmental impact of long-term cultivation of transgenic insect-resistant plants in credible field conditions. We obtained samples at four different growth stages of cotton (seedling, budding, boll forming and boll opening). The results showed significant seasonal variation in the number of bacteria, fungi, azotobacter, denitrifying bacteria and ammonia-oxidizing bacteria and in diversity indices of microorganisms, but no significant difference in the number of each microbial population or diversity indices attributable to long-term cultivation of transgenic cotton. [ABSTRACT FROM AUTHOR]

Understanding the effects of disturbance and secondary succession on spatio-temporal patterns in the abundance of species is stymied by a lack of long-term demographic data, especially in response to infrequent and high intensity disturbances, such as hurricanes. Moreover, resistance and resilience to hurricane-induced disturbance may be mediated by legacies of previous land use, although such interactive effects are poorly understood, especially in tropical environments. We address these central issues in disturbance ecology by analyzing an extensive dataset, spanning the impacts of Hurricanes Hugo and Georges, on the abundance of a Neotropical walking stick, Lamponius portoricensis, in tabonuco rainforest of Puerto Rico during the wet and dry seasons from 1991 to 2007. By synthesizing data from two proximate sites in tabonuco forest, we show that resistance to Hurricane Hugo (97% reduction in abundance) was much less than resistance to Hurricane Georges (21% reduction in abundance). Based on a powerful statistical approach (generalized linear mixed-effects models with Poisson error terms), we documented that the temporal trajectories of abundance during secondary succession (i.e., patterns of resilience) differed between hurricanes and among historical land use categories, but that the effects of hurricanes and land use histories were independent of each other. These complex results likely arise because of differences in the intensities of the two hurricanes with respect to microclimatic effects (temperature and moisture) in the forest understory, as well as to time-lags in the response of L. portoricensis to changes in the abundance and distribution of preferred food plants ( Piper) in post-hurricane environments. [ABSTRACT FROM AUTHOR]

The over-dispersion parameter is an important and versatile measure in the analysis of one-way layout of count data in biological studies. For example, it is commonly used as an inverse measure of aggregation in biological count data. Its estimation from finite data sets is a recognized challenge. Many simulation studies have examined the bias and efficiency of different estimators of the over-dispersion parameter for finite data sets (see, for example, Clark and Perry, Biometrics 1989; 45:309-316 and Piegorsch, Biometrics 1990; 46:863-867), but little attention has been paid to the accuracy of the confidence intervals (CIs) of it. In this paper, we first derive asymptotic procedures for the construction of confidence limits for the over-dispersion parameter using four estimators that are specified by only the first two moments of the counts. We also obtain closed-form asymptotic variance formulae for these four estimators. In addition, we consider the asymptotic CI based on the maximum likelihood (ML) estimator using the negative binomial model. It appears from the simulation results that the asymptotic CIs based on these five estimators have coverage below the nominal coverage probability. To remedy this, we also study the properties of the asymptotic CIs based on the restricted estimates of ML, extended quasi-likelihood, and double extended quasi-likelihood by eliminating the nuisance parameter effect using their adjusted profile likelihood and quasi-likelihoods. It is shown that these CIs outperform the competitors by providing coverage levels close to nominal over a wide range of parameter combinations. Two examples to biological count data are presented. Copyright © 2010 John Wiley & Sons, Ltd. [ABSTRACT FROM AUTHOR]

We tested the effect of soil compaction on Norway spruce seedlings in terms of the size and theoretical volume flow rate of the tracheids. The results show that soil pressure limits growth in the diameter of the lumens of tracheids in all parts of seedlings studied. The tracheids of the roots with primary xylem had larger lumens than those of the roots and shoots with secondary xylem in both unloaded and loaded seedlings. This corresponds to the higher cumulative theoretical volume flow rate of the tracheids from roots with primary xylem than those from roots and shoots with secondary xylem. Although the volume flow rate of tracheids, according to the Hagen-Poiseuille law, was directly proportional to the quadratic power of the capillary diameter (tracheid lumen), the cumulative curve of the theoretical hydraulic volume flow rate was higher or relatively comparable in loaded seedlings. An explanation for these findings is that there were higher gradients of water potential values in roots and leaves in loaded seedlings because the lengths of the conductive pathways were 27% shorter than in unloaded seedlings. We hypothesise that trees have adapted to different stresses by shortening their conductive pathways to maintain a transpiration rate similar to that of non-stressed trees. These results concerning the impact of soil compaction on tracheid diameter and volume flow rate improve our understanding of the growth and functioning of different conifer organs and the mechanisms underlying the efficiency of water transport through the root xylem to the shoot. [ABSTRACT FROM AUTHOR]

In this study, Bt transgenic rice (KMD rice) residue decomposition and the associated microbial community in a rapeseed-rice cropping system were assessed in comparison with its parental non- Bt rice variety (XiuShui 11). Decomposition was measured as mass loss by straw and root decay in litterbags over two consecutive years. Bacterial and fungal community compositions associated with residue decomposition were detected by terminal restriction fragment length polymorphism (T-RFLP) and the additive main effects multiplicative interaction (AMMI) analysis model. Decomposition dynamics and bacterial and fungal communities associated with decomposition were strongly affected by surface and incorporated placements, and by temporal factors. However, no significant differences were observed between Bt and non- Bt rice variety in either decomposition dynamics or in the soil microbial communities associated with residue decay. Our field study indicated that the insertion of the cry1Ab gene into Xiushui 11 rice genome had no significant effect on the residual decay and decomposition-associated microbial community compositions in the rapeseed-rice cropping system. [ABSTRACT FROM AUTHOR]

Background: Carbon can move below ground between ectomycorrhizal plants, but the relative importance of transfer through common mycorrhizal networks (CMNs) or soil pathways remains unclear. We studied carbon transfer between paper birch (Betula papyrifera) and Douglas-fir (Pseudotsuga menziesii) seedlings grown in adjacent root-restrictive pouches inside root chambers. Aims: The objective of this study was to compare transfer between CMN pathways and soil pathways by testing if: (1) carbon transfer between paper birch and Douglas-fir is bi-directional, (2) there is a net gain in carbon by one of the tree species; and (3) more carbon is transferred through the CMN pathway than the soil pathway. Methods: Following 8 months in the greenhouse, hyphal linkages crossing root pouches were either severed or left intact. Seedlings were then reciprocally labelled with 13CO2 and 14CO2. Results: We found carbon was transferred bi-directionally, with a 2-3% net gain in carbon by Douglas-fir from paper birch. Both bi-directional and net transfer occurred where the CMN was severed, but transfer was greater where it was left intact, indicating that carbon was transferred through both the soil and CMN pathways. Conclusions: Our results suggest that significant amounts of labelled carbon were transferred between plant species, showing for the first time in a balanced pulse-labelling experiment that approximately three times as much carbon was transferred through CMN pathways than soil pathways. That most carbon transfer occurred through CMNs could affect competitive interactions between establishing seedlings, favouring some included in the CMN while disadvantaging others, thus fundamentally altering our understanding of how interspecific interactions alter community structure. [ABSTRACT FROM AUTHOR]

Given the fundamental importance of xylem safety and efficiency for plant survival and fitness, it is not surprising that these are among the most commonly studied features of hydraulic architecture. However, much remains to be learned about the nature and universality of conflicts between hydraulic safety and efficiency. Although selection for suites of hydraulic traits that confer adequate plant fitness under given conditions is likely to occur at the organismal level, most studies of hydraulic architecture have been confined to scales smaller than the whole plant, such as small-diameter branches and roots. Here we discuss the impact of the spatial and temporal contexts in which hydraulic traits are studied on the interpretation of their role in maintaining plant hydraulic function. We argue that further advances in understanding the ecological implications of different suites of plant hydraulic traits will be enhanced by adopting an integrated approach that considers variation in hydraulic traits throughout the entire plant, dynamic behavior of water transport, xylem tension and water transport efficiency in intact plants, alternate mechanisms that modulate hydraulic safety and efficiency, and alternate measures of hydraulic safety and safety margins. [ABSTRACT FROM AUTHOR]

The complexity inherent in variable, or mixed-severity fire regimes makes quantitative characterization of important fire regime attributes (e.g., proportion of landscape burned at different severities, size and distribution of stand-replacing patches) difficult. As a result, there is ambiguity associated with the term ‘mixed-severity’. We address this ambiguity through spatial analysis of two recent wildland fires in upper elevation mixed-conifer forests that occurred in an area with over 30 years of relatively freely-burning natural fires. We take advantage of robust estimates of fire severity and detailed spatial datasets to investigate patterns and controls on stand-replacing patches within these fires. Stand-replacing patches made up 15% of the total burned area between the two fires, which consisted of many small patches (<4 ha) and few large patches (>60 ha). Smaller stand-replacing patches were generally associated with shrub-dominated ( Arctostaphylos spp. and Ceanothus spp.) and pine-dominated vegetation types, while larger stand-replacing patches tended to occur in more shade-tolerant, fir-dominated types. Additionally, in shrub-dominated types stand-replacing patches were often constrained to the underlying patch of vegetation, which for the shrub type were smaller across the two fire areas than vegetation patches for all other dominant vegetation types. For white and red fir forest types we found little evidence of vegetation patch constraint on the extent of stand-replacing patches. The patch dynamics we identified can be used to inform management strategies for landscapes in similar forest types. [ABSTRACT FROM AUTHOR]

We investigated the role of tetrapartite associations between an arbuscular mycorrhizal (AM) fungus ( Glomus geosporum), phosphate solubilizing bacteria ( Paenibacillus polymyxa), Frankia and Casuarina equisetifolia on growth, nutrient acquisition, nutrient utilization and seedling quality of C. equisetifolia. Seedlings of C. equisetifolia were grown in an Alfisol soil and inoculated with G. geosporum, P. polymyxa and Frankia either individually or in combinations. Inoculation of bioinoculants stimulated seedling growth, the efficiency of nutrient uptake and improved seedling quality. However, microbial inoculation generally reduced the efficiency of nutrient utilization in dry matter production (nutrient use efficiency). Inoculation of P. polymyxa or Frankia increased the extent of AM colonization, which resulted in the accumulation of the nutrients. Seedlings inoculated with Frankia and G. geosporum had more, and heavier nodules compared to seedlings inoculated with Frankia alone. Dual inoculation of microbes was more effective than individual inoculations. The growth response of seedlings to inoculation involving all the microbes was greater than the response to either individual or dual inoculations. The results of this study showed that the tetrapartite association could improve the growth, nutrient acquisition and seedling quality of C. equisetifolia under tropical nursery conditions. [ABSTRACT FROM AUTHOR]

Wildfires and post-fire logging and planting have a lasting influence on the quantity and arrangement of live and dead vegetation, which can, in turn, affect the behavior of future fires. In 2002, the Biscuit Fire re-burned 38,000 ha of mixed-conifer/evergreen hardwood forest in southwestern Oregon that had burned heterogeneously during the 1987 Silver Fire and then was subject, in part, to post-fire logging and planting. Wemeasured vegetation cover and crown damage from at temporal sequence (1987, 2000, and 2002) of digital aerial photo-plots (plot size = 6.25 ha)withinmanaged and unmanaged portions of the twice-burned landscape. We estimated the strength and nature of relationships between crown damage in the two fires while also accounting for the influence of several vegetation, topographic, weather, and management variables. On average, unmanaged plots within the reburn area had 58%of their live crown cover scorched or consumed by the Biscuit Fire (median = 64%). The level of re-burn crown damagewas strongly related to the level of crown damage during the Silver Fire. Typically, the areas that burned severely in the Silver Fire succeeded to a mix of shrubs and tree regeneration (i.e. shrub-stratum vegetation), which then experienced high levels of Biscuit Fire damage. In contrast, the level of tree-stratum damage in the Biscuit Fire was largely independent of Silver Fire damage. Within plots that were salvage-logged then planted after the Silver Fire, on average 98% of the vegetation cover was damaged by the Biscuit Fire (median = 100%). Within the plots that experienced complete crown damage in the Silver Fire but were left unmanaged, on average 91% of the vegetation cover was damaged by the Biscuit Fire (median = 95%). Our findings suggest that in productive fire-prone landscapes, a post-fire mosaic of young regenerating vegetation can influence the pattern of crown damage in future wildfires. [ABSTRACT FROM AUTHOR]

The effects of weather, terrain, fuels on fire severity were compared using remote sensing of the severity of two large fires in south-eastern Australian forests. The probability of contrasting levels of fire severity (fire confined to the understorey vs. tree canopies consumed) was analysed using logistic regression. These severities equate to extremes of fire intensity (<1,500 vs.>10,000 kW m-1), consequent suppression potential (high vs. nil) and potential adverse ecological impacts on vertebrate fauna and soils (low vs. high). Weather was the major influence on fire severity. Crown fire was absent under nonextreme weather and but more likely under extreme weather, particularly on ridges in vegetation unburnt for [10 years. Crown fire probability was very low in recently burnt vegetation (1-5 years) and increased at higher fuel ages. In all cases, fire severity was lower in valleys, probably due to effects of wind protection and higher fuel moisture in moderating fire behaviour. Under non-extreme weather, fires are likely to be suppressible and burn heterogeneously, due to the influence of topographic position, slope and fuel load. Under extreme weather, fires are influenced only by fuel and topographic position, and probability of suppression on accessible ridges will be low except in recently burnt (i.e. 1-5 year old) fuels. Topographically imposed variation may mitigate adverse ecological effects on arboreal fauna and soil erosion potential. [ABSTRACT FROM AUTHOR]

This study quantifies the short-term effects of low-, moderate-, and high-severity fire on carbon pools and fluxes in the Eastern Cascades of Oregon. We surveyed 64 forest stands across four fires that burned 41,000 ha (35%) of the Metolius Watershed in 2002 and 2003, stratifying the landscape by burn severity (overstory tree mortality), forest type (ponderosa pine [PP] and mixed-conifer [MC]), and prefire biomass. Stand-scale C combustion ranged from 13 to 35% of prefire aboveground C pools (area − weighted mean = 22%). Across the sampled landscape, total estimated pyrogenic C emissions were equivalent to 2.5% of statewide anthropogenic CO2 emissions from fossil fuel combustion and industrial processes for the same 2-year period. From low- to moderate- to high-severity ponderosa pine stands, average tree basal area mortality was 14, 49, and 100%, with parallel patterns in mixed-conifer stands (29, 58, 96%). Despite this decline in live aboveground C, total net primary productivity (NPP) was only 40% lower in high- versus low-severity stands, suggesting strong compensatory effects of non-tree vegetation on C uptake. Dead wood respiratory losses were small relative to total NPP (range: 10–35%), reflecting decomposition lags in this seasonally arid system. Although soil C, soil respiration, and fine root NPP were conserved across severity classes, net ecosystem production (NEP) declined with increasing severity, driven by trends in aboveground NPP. The high variability of C responses across this study underscores the need to account for landscape patterns of burn severity, particularly in regions such as the Pacific Northwest, where non-stand-replacement fire represents a large proportion of annual burned area. [ABSTRACT FROM AUTHOR]

Background, aim, and scope Genetic modification of commercial crops may affect their decomposition and nutrient cycling processes in agricultural ecosystems. Intensive rice cultivation under partially submerged conditions (paddy rice) is an important and widespread cropping system, particularly in the tropics, yet there is little data on the decomposition of Bt rice residue under field conditions. We investigated straw and root decomposition of rice modified to express the Cry1Ab protein of Bacillus thuringiensis (Bt) to kill lepidopteran pests, compared with a parental non-Bt isoline. The objective of this study was to assess the possible impacts of cry gene transformation of rice on residue decomposition under intensive rice cultivation with long period of submergence. Materials and methods The decomposition experiment was set up as a completely randomized design for two types of rice residues, KMD (Bt) and Xiushui 11 (non-Bt parental variety) in triplicate. All together six plots (4 mx15 m each) were cultivated in two successive years by conventional intensive rice cropping methods. Litterbags were used to evaluate rice residue decomposition. Two grams of Bt and non-Bt rice roots or 5 g of rice straw were sealed in a 10x15-cm nylon mesh litterbag. A total of 192 straw and root litterbags each were prepared. Both kinds of litterbags were then placed either at the surface or buried at 10 cm depth along two parallel transects within each plot in the field on 24 December, 2005. Decomposition dynamics were determined by changes in ash-free mass remaining (AFMR), and nutrient content (C and N) of rice straw and root materials contained in mesh litterbags. Cellulose and lignin contents of the original rice residues were determined according to Van Soest's methods (1963). The AFMR was recorded by calculating ash weight. Total C (TC) and total N (TN) of the samples were analyzed by combustion in an element autoanalyzer and calculated by multiplying %C and %N by the final weights obtained prior to ashing. Results AFMR, total carbon, and C:N ratios of the rice residues decreased over time. An increase in total nitrogen was observed at the beginning of straw decomposition, from day 17 to 31. There were no substantial differences in straw decomposition between Bt and conventional rice varieties, but Bt roots in buried litterbags displayed significantly lower AFMR, TN, and TC contents at the initial decomposition stage (day 31, 68, and 137 for AFMR and TC and day 68, 137, and 207 for TN) compared to the conventional rice. Discussion The significant differences which were detected at the initial decomposition may not result from the expression of the cry1Ab gene. It is more likely that the genetic transformation or the effect of inserting foreign genes may result in differences between Bt and non-Bt rice with respect to chemical composition of rice plant residues.… [ABSTRACT FROM AUTHOR]

There are surprisingly few studies documenting effects of tropical cyclones (including hurricanes and typhoons) on rainforest animals, and especially insects, considering that many tropical forests are frequently affected by cyclonic disturbance. Consequently, we sampled a beetle assemblage inhabiting 18 upland rainforest sites in a fragmented landscape in north-eastern Queensland, Australia, using a standardised sampling protocol in 2002 and again 12 months after the passage of Severe Tropical Cyclone Larry (March 2006). The spatial configuration of sites allowed us to test if the effects of a cyclone and those from fragmentation interact. From all insect samples we extracted 12,568 beetles of 382 species from ten families. Beetle species composition was significantly different pre-and post-cyclone although the magnitude of faunal change was not large with 205 species, representing 96% of all individuals, present in both sampling events. Sites with the greatest changes to structure had the greatest changes in species composition. At the site level, increases in woody debris and wood-feeding beetle (Scolytinae) counts were significantly correlated but changes in the percent of ground vegetation were not mirrored by changes in the abundance of foliage-feeding beetles (Chrysomelidae). The overall direction of beetle assemblage change was consistent with increasing aridity, presumably caused by the loss of canopy cover. Sites with the greatest canopy loss had the strongest changes in the proportion of species previously identified in the pre-cyclone study as preferring arid or moist rainforest environments. The magnitude of fragmentation effects was virtually unaltered by the passage of Cyclone Larry. We postulate that in the short-term the effects of cyclonic disturbance and forest fragmentation both reduce the extent of moist, interior habitat. [ABSTRACT FROM AUTHOR]

The article examines the use of spatial metrics and methods to quantify the composition and configuration of riverspaces for riverine fish and the capacity of the metrics to detect the effects of flow variability and human alterations on fish habitat patterns in La Bassée of the Siene river in France. Two geographic information system-based maps were used in mapping vital habitats. Different aspects of the spatial organization of the habitat from the composition and configuration of metrics at the habitat and habitat patch scales were revealed.

Commercially available DNA microarrays containing genome-wide spotted oligonucleotides encompass the soil bacteria Bacillus subtilis or Streptomyces coelicolor genomes. These have been used to analyse potential differences in rhizobacterial communities of transgenic maize engineered to express the Bacillus thuringensis Cry toxin (Bt maize) in three different agricultural soils. No differences in hybridisation were observed between genetically and non-genetically modified maize rhizobacteria from two Bt lines with a detection sensitivity of five copies of a particular gene above the background. Soil-specific hybridisation results were obtained when rhizobacterial DNA was compared to the corresponding genomic DNA spotted in the microarrays suggesting that the use of genome-wide DNA arrays could serve as a useful tool for the molecular monitoring of rhizobacterial communities. [ABSTRACT FROM AUTHOR]

Abstract  The zooplankton community of Alpine lake Seehornsee (1,779 m a.s.l.) was studied over a period of 13 years. In 1994, a typical high-altitude zooplankton community, consisting of two calanoid copepods (Mixodiaptomus laciniatus, Arctodiaptomus alpinus), one cladoceran (Daphnia rosea), and two rotifers (Keratella quadrata, Synchaeta pectinata) coexisted with infertile charr hybrids, which had been introduced in 1969 and again in 1974. When the aged fish were removed by intensive gill netting, they had fed predominantly on aquatic insects. After a fish-free period of 4 years, 2000 fertile juvenile Alpine charr (Salvelinus umbla) were stocked in 1998 and again in 1999. They preyed on benthic (chydorids, ostracods, cyclopoid copepods, chironomid larvae and pupae) and planktonic prey (diaptomid copepods, Daphnia). Between 2004 and 2006 charr successfully reproduced. Nine years after stocking of fertile charr, the two calanoids had virtually disappeared, and Daphnia rosea had notably declined in abundance. In concordance with the size efficiency hypothesis (Brooks and Dodson 1965), the newly appearing and smaller cladoceran Ceriodaphnia pulchella, together with the two resident, and two emerging species of rotifers (Polyarthra luminosa, Gastropus stylifer) dominated the zooplankton community. [ABSTRACT FROM AUTHOR]

Abstract  The rhizosphere is a niche exploited by a wide variety of bacteria. The expression of heterologous genes by plants might become a factor affecting the structure of bacterial communities in the rhizosphere. In a greenhouse experiment, the bacterial community associated to transgenic eucalyptus, carrying the Lhcb1-2 genes from pea (responsible for a higher photosynthetic capacity), was evaluated. The culturable bacterial community associated to transgenic and wild type plants were not different in density, and the Amplified Ribosomal DNA Restriction Analysis (ARDRA) typing of 124 strains revealed dominant ribotypes representing the bacterial orders Burkholderiales, Rhizobiales, and Actinomycetales, the families Xanthomonadaceae, and Bacillaceae, and the genus Mycobacterium. Principal Component Analysis based on the fingerprints obtained by culture-independent Denaturing Gradient Gel Electrophoresis analysis revealed that Alphaproteobacteria, Betaproteobacteria and Actinobacteria communities responded differently to plant genotypes. Similar effects for the cultivation of transgenic eucalyptus to those observed when two genotype-distinct wild type plants are compared. [ABSTRACT FROM AUTHOR]

The vertical stratification of lepidopteran and coleopteran communities in a cool-temperate deciduous forest in Japan was examined to evaluate the hypothesis of an expected uniform distribution of mobile flying insects between the canopy and understory of temperate forests. Lepidopteran and coleopteran insects were trapped using light traps at three sites in each of the canopy and understory for three consecutive nights each month from April to October 2001. For Lepidoptera, species richness, abundance, and family richness were significantly higher in the understory than in the canopy. For Coleoptera, only abundance was larger in the canopy relative to the understory; species and family richness did not differ between the strata. The beta diversity of the lepidopteran community was larger between the strata than among sites, but the coleopteran community showed an inverse pattern. These results imply the presence of vertical stratification within the lepidopteran community, but not within the coleopteran community, in the temperate forest. The understory contributes more than the canopy to lepidopteran diversity in the temperate forest, although this stratification may be relatively weak because, in contrast to the situation in tropical forests, the canopy and understory assemblages share many species. [ABSTRACT FROM AUTHOR]

Abstract  The impact of multiple-year (0–5 years) cultivation of transgenic Bacillus thuringiensis (Bt) cotton on the functional bacterial populations in rhizosphere soil was investigated. The transgenic Bt + CpTI cotton line SGK321 and a non-Bt cotton line Shiyuan321 were planted in four fields in which Bt cotton had been continuously cultivated for 0, 1, 3, and 5 years. Rhizosphere soil samples were collected at the seedling, squaring, flower and boll, and boll-opening stages of cotton. Numbers of bacteria involved in nitrogen-fixing, organic phosphate-dissolving, inorganic phosphate-dissolving, and potassium-dissolving were measured with cultivation-dependent approaches. The data presented here showed no consistent statistically significant differences in the numbers of different groups of functional bacteria between rhizosphere soil of Bt and non-Bt cotton in the same field, and no obvious trends in the numbers of the various group of functional bacteria with the increasing duration of Bt cotton cultivation. These studies suggest that multiple-year cultivation of transgenic Bt cotton may not affect the functional bacterial populations in rhizosphere soil. [ABSTRACT FROM AUTHOR]

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The introduction of genetically modified (GM) plants in agroecosystems raises concern about possible effects on nontarget species. The impact of a tomato line transformed for constitutive expression of tobacco β-1,3-glucanase and chitinase on indigenous nonpathogenic fungi was investigated. In greenhouse experiments, no significant differences were found in the colonization by arbuscular mycorrhizal fungi. Diversity indices computed from over 20 500 colonies of culturable rhizosphere and phyllosphere saprotrophic microfungi, assigned to 165 species (plus>80 sterile morphotypes), showed no significant differences between GM and wild-type plants. Differences were found by discriminant analysis in both the rhizosphere and the phyllosphere, but such effects were minor compared with those linked to different plant growth stages. [ABSTRACT FROM AUTHOR]

Abstract  The fate of a biocontrol agent released on pine phyllosphere in a greenhouse-confined trial was followed over 102 days. The microorganism used, a Pseudomonas sp., isolated from Pinus nigra, carries the cry9a toxin gene from Bacillus thuringiensis. In order to detect the GMM, specific primers were used, and a previously defined protocol for DNA isolation from bacteria colonizing pine needles was applied. The method, based on vortexing in a suspension of glass beads followed by microcolumn extractions, allowed sensitive PCR monitoring of the target transgenes. The presence of the released organism was recorded throughout the trial and compared with its entomocidal performance towards larvae of the pine processionary caterpillar Thaumetopoea pityocampa. At the same time the dynamics of the released Pseudomonas within the whole epiphytic bacterial community, was followed by amplifying 16S rDNA pools and comparing ARDRA profiles at seven sampling points. The resulting dendrogram allowed to follow the time-dependent progressive blending of the Pseudomonas profile into those of the resident biota. PCR-dominance of the released bacterium in the community was extended until 21 days from release while its activity against insect larvae lasted for over 3 months. The prokaryotic epiphytic population, irrespective of any particular impact from the released strain, showed no resilience but a general successional trend, which, remarkably, appeared synchronous on all trees tested, including non-inoculated controls. This observation suggests interesting patterns of concerted environmental shifts by phyllospheric microorganisms. [ABSTRACT FROM AUTHOR]

This paper reviews recent achievements in sustainability science and discusses the research core and framework of sustainability science. We analyze and organize papers published in three selected core journals of sustainability science: Sustainability Science, Proceedings of the National Academy of Sciences of the United States of America, and Sustainability: Science, Practice, & Policy. Papers are organized into three categories: sustainability and its definition, domain-oriented research, and a research framework for sustainability science. First, we provide a short history and define the basic characteristics of sustainability; then we review current efforts in the following research domains: climate, biodiversity, agriculture, fishery, forestry, energy and resources, water, economic development, health, and lifestyle. Finally, we propose a research framework for sustainability science that includes the following components: goal setting, indicator setting, indicator measurement, causal chain analysis, forecasting, backcasting, and problem–solution chain analysis. We emphasize the importance of this last component for improving situations and attaining goals. [ABSTRACT FROM AUTHOR]

Abstract  Pink-pigmented facultative methylotrophs (PPFMs) are one of the beneficial proteobacteria commonly found in phyllosphere, rhizosphere and as endophytes in cotton. To assess the impact of transgenic Bt-cotton on changes in the diversity and community profile of PPFMs by comparing with its non-transgenic cotton, a polyphasic approach including differential carbon-substrate utilization profiling and DNA fingerprinting techniques like ARDRA, RISA, BOX-PCR and ERIC-PCR were studied. PPFMs from phyllosphere, rhizoplane and internal tissues of the stem of both Bt-cotton and non-Bt-cotton were isolated and analysed in this study. All the results suggested that the diversity richness of PPFMs present in the phyllosphere, rhizoplane and internal tissues did not differ between Bt- and non-Bt-cotton. In this study, there was no evidence to indicate any adverse effects of Bt-cotton on the diversity of plant-associated methylobacteria. [ABSTRACT FROM AUTHOR]

The article presents a study on the relevance of aquatic and terrestrial habitats in conserving newt guilds in an agricultural landscape in Belgium. The study investigated the main habitat determinants for the appearance of four species of newts. The occurrence of newt was identified on 42 percent of ponds and linear models were used to evaluate the effect of habitat on distribution determinants. Results showed that there is a need for maintaining both forest and meadow patches in close proximity to ponds where there are newts and for limiting fish production in those ponds.

We applied multivariate analyses to an array of body measures of alpine newt specimens derived from 11 local populations in Greece to describe, analyse and detect patterns and putative causes of within-population and among-population morphometric variation. The observed morphometric variation was partitioned into several independently varying aspects of the external phenotype, frequently following variation patterns in different environmental factors. The size and features of the aquatic habitat were found to affect body size, while altitude was found to affect head-shape variation in both sexes. At the intra-population level, variation in generalized body size and shape was found to be significantly lower when competitive newt species were present in the habitat, indicating stabilizing selection towards a decrease in inter-specific competition. No clear discrimination on body size and shape proportions was detected between the two genetic lineages examined, implying ecogenetic or environmentally induced variation rather than phylogeny. [ABSTRACT FROM AUTHOR]

Soil fungi couple plant and ecosystem resource demands to pools of soil resources. Research on these organisms is needed to predict how rising atmospheric CO2 will influence forest ecosystem processes and soil carbon (C) sequestration potential. We examined the influence of free-air-CO2-enrichment (FACE) on mycorrhizal and extraradical rhizomorph dynamics over a 5-year period in a loblolly pine forest using minirhizotrons. Standing crop of mycorrhizal root tips varied greatly spatially and through time. Summed across all years, CO2 enrichment increased mycorrhizal root tip production by 194% in deep soil (15–30 cm) but did not influence mycorrhizal production in shallow soil (0–15 cm). Production and mortality of soil rhizomorph length was 27% and 25% greater in CO2-enriched plots compared with controls over a 5-year period beginning in January of 2000 and running through autumn 2004. Effects of atmospheric CO2 enrichment on longevity of mycorrhizal root tips and rhizomorphs varied with soil depth (mycorrhizae and rhizomorphs) and with diameter (rhizomorphs). For instance, survival of mycorrhizal tips was reduced in CO2-enriched plots in deep soil (15–30 cm depth) but was increased in shallower soil (0–15 cm). Rhizomorph turnover was accelerated in shallow soil but effects on survivorship in deep soil varied according to diameter. A drought in 2002 coupled with loss of leaf area to an ice storm late in 2002 were followed by reductions in rhizomorph and mycorrhizal production, increases in mortality, and decreases in standing crop during 2003 and 2004. These effects tended to be more severe in CO2-enriched plots. Positive effects of atmospheric CO2 enrichment on mycorrhizal fungi, primarily observed in deeper soil, are probably contributing to the prolonged stimulation of NPP by CO2 enrichment at the Duke FACE study site. [ABSTRACT FROM AUTHOR]

The article reviews the impact on soil of conservation practices and glyphosate-resistant crops. It presents data from a Mississippi field trial comparing glyphosate-resistant and non-glyphosate resistant maize (Zea mays L.) and cotton (Gossypium hirsutum L.) under the limited tillage management. The review concludes that there are minor effects of glyphosate use on soil biological/chemical properties. On the other hand, enhanced organic carbon and plant residues in surface soils under conservation practices can influence potential effects of glyphosate. It is recommended that a long-term research under various cropping systems and ecological reasons be made for the critical assessment of glyphosate-resistant crop and conservation practice interactions.

The article presents a study on the effects of temperature, humidity and rainfall on captan decline on apple leaves and fruits exposed in a controlled temperature and environment conditions. This paper focuses on the importance of captan as the choice fungicide in disease control in horticultural crops. These experiments were done to investigate the relationship of captan loss on apple leaves and on fruits in dry conditions. Variability in captan residues were examined to determine the factors in controlled application.

Community dynamics in local habitats are affected by landscape characteristics such as the area and connectivity of surrounding habitats at a functional spatial scale where the community responds to landscape structure. However, the functional spatial scale at which community composition is affected by landscape structure has never been explored. We assessed the functional spatial scales of composition change in birds and in three types of arthropod communities (canopy, forest-floor and flying ones) with regard to landscape heterogeneity resulting from a large typhoon in a temperate forest of Japan. We examined the effects of tree-fall disturbance on the communities at various spatial scales, with special attention to compositional evenness. The spatial scale of the best-fitting model, which was selected from models fitted to the disturbance area at stepwise spatial scales, was interpreted as the community-specific functional spatial scale. The composition of all communities studied was all significantly dependent on gap area. The functional spatial scale was highest in birds (370 m in radius), intermediate in flying arthropods (90 m) and lowest in canopy and forest-floor arthropods (10 m). This result may reflect typical dispersal ability and the spatial range of resource use in the community. Compositional changes in each community were consistent with theory regarding traits and responses of component taxa, although the enhancement of evenness was observed only in the arthropod communities. These results imply that management and reserve selection based on functional spatial scales can be effective in the conservation of biodiversity and ecosystem services at the community level. [ABSTRACT FROM AUTHOR]

An investigation was conducted to quantify fine roots and roots nodules over the four seasons in forestry and agroforestry alder ( Alnus rubra) stands in North Wales. Soil samples collected in each season were excavated at three sampling points (0.30 m, 0.57 m and 1.00 m distance from the base of each tree) from nine trees of the agroforestry and forestry plots. Result showed that the density of live fine root had significant differences in between seasons and treatments ( P < 0.001). The mean weight density of live fine root over the four seasons in agroforestry and forestry was 0.27±0.01 kg·m−3 and 0.54±0.03 kg·m−3, respectively. Weight density of dead root in each system remained constant throughout the year. The mean weight density of dead root was also significantly different ( P < 0.01) between forestry and agroforestry systems. Weight density of live and dead root nodule was both constant throughout the year and between the different sampling distances. The mean weight densities of live and dead root nodule over the four seasons were 0.09±0.03 kg·m−3 and 0.05±0.03 kg·m−3 in agroforestry and 0.08±0.02 kg·m−3 and 0.03±0.01 kg·m−3 in the forestry plots, respectively. [ABSTRACT FROM AUTHOR]

Proteinase inhibitors (PI) are present in plant tissues, especially in seeds, and act as a defense mechanism against herbivores and pathogens. Serine PI from soybean such as Bowman-Birk (BBPI) and Kunitz have been used to enhance resistance of sugarcane varieties to the sugarcane borer Diatraea saccharalis (Fabricius) (Lepidoptera: Crambidae), the major pest of this crop. The use of these genetically-modified plants (GM) expressing PI requires knowledge of its sustainability and environmental safety, determining the stability of the introduced characteristic and its effects on non-target organisms. The objective of this study was to evaluate direct effects of ingestion of semi-purified and purified soybean PI and GM sugarcane plants on the soil-dwelling mite Scheloribates praeincisus (Berlese) (Acari: Oribatida). This mite is abundant in agricultural soils and participates in the process of organic matter decomposition; for this reason it will be exposed to PI by feeding on GM plant debris. Eggs of S. praeincisus were isolated and after larvae emerged, immatures were fed milled sugarcane leaves added to semi-purified or purified PI (Kunitz and BBPI) or immatures were fed GM sugarcane varieties expressing Kunitz and BBPI type PI or the untransformed near isogenic parental line variety as a control. Developmental time (larva-adult) and survival of S. praeincisus was evaluated. Neither Kunitz nor BBPI affected S. praeincisus survival. On the other hand, ingestion of semi-purified and purified Kunitz inhibitor diminished duration of S. praeincisus immature stages. Ingestion of GM senescent leaves did not have an effect on S. praeincisus immature developmental time and survival, compared to ingestion of leaves from the isogenic parental plants. These results indicate that cultivation of these transgenic sugarcane plants is safe for the non-target species S. praeincisus. [ABSTRACT FROM AUTHOR]

The effect of disturbance on local communities may operate within the context of the spatial landscape. We examined the scale-dependent effects of windthrow disturbance caused by a large typhoon on three arthropod communities in a temperate forest of Japan. Canopy arthropods were collected by beating foliage, forest-floor arthropods were collected by sweeping the vegetation, and flying arthropods were collected in Malaise traps. To assess the “functional spatial scale” at which arthropods responded to tree-fall disturbance, the gap rate was quantified at different spatial scales by sequentially enlarging the radius of a circular landscape sector in 10-m increments from 10 to 500 m. We then analyzed the responses of order richness and abundance to the gap rate for each arthropod community. The spatial scale of the significant best-fitting model, which was selected from the models fitted to the gap rate at stepwise spatial scales, was regarded as the arthropod-specific functional spatial scale. Arthropod order richness was not dependent on the gap rate. In contrast, arthropod order abundance depended significantly on the gap rate in many orders, but varied in the response direction and functional spatial scale. These order-specific, scale-dependent responses to tree-fall gaps could complicate interactions among organisms, leading to complex community organization. An understanding of the spatial processes that link the use of space by organisms with the spatial scale at which ecological processes are experienced is required to elucidate the responses of populations, communities, and biotic interactions to disturbances in a spatial landscape context. [ABSTRACT FROM AUTHOR]