173 results on '"K. Batabyal"'
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152. Photoinduced electrical bistability of sputter deposited CdZnTe thin films.
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G Rajesh, N Muthukumarasamy, Dhayalan Velauthapillai, Kallol Mohanta, V Ragavendran, and Sudip K Batabyal
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- 2018
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153. Formation of Glassy Films by N2+ Ion Implantation into Fe and Ni
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Parsathi Chatterjee, A.K. Barua, and A. K. Batabyal
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Ion implantation ,Materials science ,Mechanics of Materials ,Mechanical Engineering ,Inorganic chemistry ,General Materials Science - Published
- 1987
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154. Effect of Deposition Temperature on the Properties of Magnetron Sputtered Hydrogenated Amorphous Silicon Films
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A. K. Barua, A. K. Batabyal, Ratnabali Banerjee, and Debajyoti Das
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Amorphous silicon ,Materials science ,Band gap ,Photoconductivity ,Doping ,General Engineering ,Analytical chemistry ,Wide-bandgap semiconductor ,General Physics and Astronomy ,Sputter deposition ,chemistry.chemical_compound ,chemistry ,Cavity magnetron ,Layer (electronics) - Abstract
Hydrogenated amorphous silicon films have been prepared by planar rf magnetron sputtering method. The effect of deposition temperature and the hydrogen dilution on the optoelectronic as well as structural properties of the films have been investigated. Parametric variations have yielded films with a wide spectrum of optoelectronic properties. Two useful results have come out of this study. First–the attractive optoelectronic properties obtained for films deposited near room temperature. This may be important from the viewpoint of potential utilisation in photovoltaic devices, where a high deposition temperature is liable to induce diffusion between the intrinsic and doped layer. The second interesting result is the realisation of undoped a-Si:H with wide optical band gap (∼1.9–2.0 eV) showing high photoconductivity (∼10-5–10-6 Ω-1 cm-1) and large ratio of photoconductivity to dark conductivity (∼104–105). This suggests an alternative to the p-type a-SiC:H films as a window layer in a-Si solar cells, after p-type doping.
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- 1989
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155. A Simple Modification of the Magnetron Sputtering Method for Deposition of Hydrogenated Amorphous Silicon Films with Improved Optoelectronic Properties
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Ratnabali Banerjee, A. K. Barua, A. K. Batabyal, and A. K. Bandyopadhyay
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Amorphous silicon ,Materials science ,business.industry ,Band gap ,Photoconductivity ,General Engineering ,General Physics and Astronomy ,Substrate (electronics) ,Sputter deposition ,chemistry.chemical_compound ,chemistry ,Magnet ,Optoelectronics ,Thin film ,business ,Deposition (law) - Abstract
A simple modification of the magnetron sputtering system has been proposed to minimise damage of the growing film by ion bombardment, particularly at high rf powers. This is sought to be achieved by placing the substrate in the field of a permanent magnet. Using this modified set up, hydrogenated amorphous silicon thin films have been deposited at different rf powers. It has been found that at higher rf powers, the films deposited with the modified set up exhibit better optoelectrical properties than those deposited with the conventional magnetron sputtering configuration.
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- 1988
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156. Effect of Light Soaking Temperature on the Metastable Defect Distribution in Magnetron Sputtered Hydrogenated Amorphous Silicon Films
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Kazunobu Tanaka, A. K. Bandyopadhyay, Ratnabali Banerjee, A. K. Batabyal, Hideyo Okushi, and A. K. Barua
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Amorphous silicon ,Photoluminescence ,Materials science ,Condensed matter physics ,Annealing (metallurgy) ,Photoconductivity ,General Engineering ,General Physics and Astronomy ,Dark conductivity ,Rate equation ,chemistry.chemical_compound ,Crystallography ,chemistry ,Metastability ,Cavity magnetron - Abstract
Light induced effects in hydrogenated amorphous silicon for different temperatures of light soaking were measured. The dark conductivity, photoconductivity and photoluminescence of the samples were measured prior to and after light soaking. The aim of this work is two-fold. One is to attempt to get a picture of the relative distributions of defect states for the films for different light soaking temperatures. The other is to check if the metastable effect is essentially a function of the soaking temperature alone or it depends upon the treatment history of the samples. Experimental results are explained by a conventional co-ordinate diagram taking into account the rate equation for the metastable defect formation, which involves both creation and annealing activation energies.
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- 1989
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157. Wire-shaped perovskite solar cell based on TiO2 nanotubes.
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Xiaoyan Wang, Sneha A Kulkarni, Zhen Li, Wenjing Xu, Sudip K Batabyal, Sam Zhang, Anyuan Cao, and Lydia Helena Wong
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NANOTUBES ,SOLAR cells ,NANOSTRUCTURED materials ,TUBES ,SOLAR batteries - Abstract
In this work, a wire-shaped perovskite solar cell based on TiO
2 nanotube (TNT) arrays is demonstrated for the first time by integrating a perovskite absorber on TNT-coated Ti wire. Anodization was adopted for the conformal growth of TNTs on Ti wire, together with the simultaneous formation of a compact TiO2 layer. A sequential step dipping process is employed to produce a uniform and compact perovskite layer on top of TNTs with conformal coverage as the efficient light absorber. Transparent carbon nanotube film is wrapped around Ti wire as the hole collector and counter electrode. The integrated perovskite solar cell wire by facile fabrication approaches shows a promising future in portable and wearable textile electronics. [ABSTRACT FROM AUTHOR]- Published
- 2016
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158. Glycine-assisted hydrothermal synthesis of NiCo2S4 as an active electrode material for supercapacitors
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M. Sathish Kumar, N. Bhagavath, Sudip K. Batabyal, and Nikhil K. Kothurkar
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Materials of engineering and construction. Mechanics of materials ,TA401-492 - Abstract
Nickel cobalt sulfide (NCS) was synthesized from nickel and cobalt nitrate (NCS-1) by a hydrothermal method. In another method, nickel cobalt sulfide (NCS-2) was also synthesized from hydrothermally synthesized nickel cobalt oxide (NCO). The syntheses of NCS-1 and NCO were conducted in the presence of glycine as a templating agent. The NCS and NCO samples were thoroughly characterized by different techniques. XRD studies showed that both NCO and NCS consisted of the cubic crystal phases. Cyclic voltammetry of NCO and NCS revealed that, with an increasing scan rate within the range of 10–100 mV s−1, the specific capacitance of the samples reduced. The specific capacitance of NCS-2, measured by galvanostatic charge–discharge, was found to be 675 F g−1, which is higher than those of NCO (313 F g−1) and NCS-1 (500 F g−1). The specific capacitance retention of NCS-2 was 88% over 1000 cycles, indicating the good cyclic stability of the material. Keywords: Nickel cobaltite, Nickel cobalt sulfide, Glycine, Pseudocapacitor, Supercapacitor
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- 2019
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159. In-silico insights of ESBL variants and tracking the probable sources of ESBL-producing Escherichia coli in a small-scale poultry farm.
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Sharmila L, Pal A, Biswas R, Batabyal K, Dey S, Joardar SN, Dutta TK, Bandyopadhyay S, Pal S, and Samanta I
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- Animals, India, Genotype, Humans, Computer Simulation, Escherichia coli Proteins genetics, Escherichia coli Proteins metabolism, Escherichia coli genetics, Escherichia coli drug effects, Escherichia coli enzymology, beta-Lactamases genetics, beta-Lactamases metabolism, Escherichia coli Infections microbiology, Escherichia coli Infections veterinary, Escherichia coli Infections transmission, Phylogeny, Molecular Docking Simulation, Farms, Poultry microbiology, Anti-Bacterial Agents pharmacology, Chickens microbiology, Microbial Sensitivity Tests, Poultry Diseases microbiology, Poultry Diseases transmission
- Abstract
Commercial broiler farms face challenges of extended spectrum beta-lactamase (ESBL)-producing Escherichia coli transmitted from both vertical and horizontal routes. Understanding the dynamics of ESBL-E. coli transmission in compromised biosecurity settings of small-scale rural poultry farms is essential. This study aimed to elucidate the probable transmission pathways of ESBL-E. coli in such settings, employing phylogenetic analysis and molecular docking simulations to explore the catalytic properties of β-lactamase variants. Sampling was conducted on a small-scale poultry farm in West Bengal, India, collecting 120 samples at three intervals during the broiler production cycle. E. coli isolates underwent resistance testing against eight antimicrobials, with confirmation of ESBL production. Genotypic analysis of ESBL genes and sequencing were performed, alongside molecular docking analyses and phylogenetic comparisons with publicly available sequences. Among 173 E. coli isolates, varying resistance profiles were observed, with complete resistance to cefixime and high resistance to amoxicillin and tetracycline. The incidence of ESBL-E. coli fluctuated over the production cycle, with dynamic changes in the prevalence of bla
CTX-M -type and blaSHV -type genes. Phylogenetic analysis indicated partial clonal relationships with human clinical strains and poultry strains from the Indian subcontinent. Molecular docking confirmed the catalytic efficiencies of these ESBL variants. The study highlights probable vertical transmission of ESBL-E. coli and emphasizes drinking water as a potential source of horizontal transmission in small-scale poultry farms. Strict biosecurity measures could prevent the spread of antimicrobial-resistant bacteria in birds and their products in a small scale poultry farm., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Ltd. All rights reserved.)- Published
- 2024
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160. Isolation of Reticuloendotheliosis Virus from Chorio-allantoic Membrane of SPF Chicken Eggs inoculated with Fowl Pox Virus.
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Roy Chowdhury N, Mondal B, Biswas SK, Maity A, Batabyal K, and Batabyal S
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- Animals, Specific Pathogen-Free Organisms, Chick Embryo, Fowlpox virology, Chorioallantoic Membrane virology, Retroviridae Infections veterinary, Retroviridae Infections virology, Reticuloendotheliosis virus isolation & purification, Chickens virology, Poultry Diseases virology, Fowlpox virus genetics, Fowlpox virus isolation & purification
- Abstract
Fowl Pox Viruses (FPV) infect chickens and turkeys giving rise to pock lesions on various body parts like combs, wattles, legs, shanks, eyes, mouth etc. The birds, affected with FPV, also show anemia and ruffled appearance which are clinical symptoms of Reticuloendotheliosis. Interestingly, the field strains of FPV are integrated with the provirus of Reticuloendotheliosis Virus (REV). Due to this integration, the infected birds, upon replication of FPV, give rise to free REV virions, causing severe immunosuppression and anemia. Pox scabs, collected from the infected birds, not only show positive PCR results upon performing FPV-specific 4b core protein gene PCR but also show positive results for the PCR of REV-specific env gene and FPV-REV 5'LTR junction. Homogenized suspension of the pock lesions, upon inoculating to the Chorio-allantoic Membrane (CAM) of 10 days old specific pathogen-free embryonated chicken eggs, produces characteristic pock lesions in serial passages. But the lesions also harbor REV mRNA or free virion, which can be identified by performing REV-specific env gene PCR using REV RNA from FPV-infected CAMs. The study suggests successful replication and availability of REV mRNA and free virion alongside the FPV virus, although the CAM is an ill-suited medium for any retroviral (like REV) growth and replication.
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- 2023
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161. Occurrence of canine parvovirus type 2c in diarrhoeic faeces of dogs in Kolkata, India.
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Abhiram S, Mondal T, Samanta S, Batabyal K, Joardar SN, Samanta I, Isore DP, and Dey S
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Canine parvovirus-2(CPV-2) causes a highly contagious disease of dogs characterised by acute hemorrhagic gastroenteritis, lethargy, vomiting, fever and usually bloody or mucoid diarrhoea. In the present study, 41 faecal samples collected from dogs exhibiting the signs of fever, vomition, bloody or mucoid diarrhoea in Kolkata, India were screened by haemagglutination test and PCR for detection of capsid protein coding VP2 gene. The viral genotype was detected by multiplex PCR and analysis of partial VP2 gene nucleotide sequences of selected PCR products with bioinformatics tool. Thirteen (31.71%) samples were found positive with HA titre ≥ 32 whereas 28 (68.29%) samples were positive by PCR of VP2 gene indicating higher sensitivity of PCR. Highest occurrence of CPV-2 was observed in the age group of 1-6 months (80.65%) and non-descript breeds with no history of vaccination (85%). Three samples were antigenic type CPV-2a, rest were CPV-2b/CPV 2c. Six CPV sequences were found to be highly similar to published CPV 2c sequences in BLAST analysis revealing a maximum identity of 99-100% with other CPV-2c strains and clustered together with CPV-2c strains of India and other countries in phylogenetic analysis. The present study highlights the need for continuous monitoring of samples to detect gradual changes in circulating CPV-2 genotypes in India., (© The Author(s), under exclusive licence to Indian Virological Society 2023. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.)
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- 2023
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162. Exploring broilers and native fowls of Andaman and Nicobar Islands as a source of β-lactamase-producing Enterobacteriaceae even with limited anthropogenic activities and docking-based identification of catalytic domains in novel β-lactamase variants.
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Bhowmick S, Pal S, Sunder J, Sujatha T, De AK, Mondal T, Singh AD, Joardar SN, Batabyal K, Dutta TK, Bandyopadhyay S, Tiwari A, and Samanta I
- Abstract
Objectives: The present study was conducted to detect the occurrence of β-lactamase and biofilm-producing Escherichia coli, Salmonella , and Klebsiella in broilers and native fowl reared in the Andaman and Nicobar Islands, India. The study also included molecular docking experiments to confirm the nature of the catalytic domains found in the β-lactamase variants obtained and to reveal the clonal relationship of the isolates with human clinical strains from the database., Materials and Methods: A total of 199 cloacal swabs were collected from five poultry breeds/varieties (broiler, Vanraja, Desi, Nicobari , and layer) in three districts of the Andaman and Nicobar Islands. E. coli, Salmonella enterica , and Klebsiella pneumoniae were isolated by standard techniques and confirmed by PCR. Phenotypical β-lactamase producers were identified by a double-disc test. The genes ( bla
CTX , blaSHV , blaTEM , and blaAmpC ) were screened, and selected sequences of β-lactamase variants were submitted to DDBJ. Homology modeling, model validation, and active site identification of different β-lactamase variants were done by the SWISS-MODEL. Molecular docking was performed to identify the catalytic domains of the β-lactamase variants. The selected β-lactamase sequences were compared with the Indian ESBL sequences from human clinical strains in NCBI-GenBank., Results: In total, 425 Enterobacteriaceae strains were isolated from the collected samples. Klebsiella pneumoniae (42.58%) was found to be the most prevalent, followed by Salmonella enterica (30.82%) and E. coli (26.58%). The phenotypical antibiogram of all 425 isolates showed the highest resistance against oxytetracycline (61-76%) and the lowest against gentamicin (15-20%). Phenotypical production of β-lactamase enzymes was observed in 141 (33.38%) isolates. The isolation rate of β-lactamase producing E. coli, Salmonella enterica , and Klebsiella pneumoniae was significantly higher ( p < 0.05) in the birds reared in the South Andaman district (25.6, 17.5, and 18.7%, respectively) than in Nicobar (11.5, 7.6, 7.1%, respectively). Genotyping of the β-lactamase-producing isolates revealed the maximum possession of blaTEM , followed by blaSHV and blaCTX - M . The nucleotide sequences were found to be similar with blaCTX - M-15 , blaSHV - 11 , blaSHV - 27 , blaSHV - 228 , blaTEM - 1 , and blaAmpC in BLAST search. Distribution of studied biofilm-associated genes in Enterobacteriaceae strains from different varieties of the birds revealed that the layer birds had the maximum possession, followed by Vanraja, Desi , broilers, and Nicobari fowls. The phylogenetic analysis of selected sequences revealed a partial clonal relationship with human clinical strains of the Indian subcontinent. Molecular docking depicted the Gibbs free energy release for 10 different macromolecules (proteins) and ligand (antibiotic) complexes, ranging from -8.1 (SHV-27 + cefotaxime) to -7 (TEM-1 + cefotaxime) kcal/mol., Conclusion and Relevance: The study revealed β-lactamase variants circulating in the fowl population of the Andaman and Nicobar Islands (India), even in remote places with low anthropogenic activity. Most of the strains possessed blaTEM - 1 , followed by blaCTX - M-15 . Possession of blaSHV - 11 , blaSHV - 27 , and blaSHV - 228 in poultry Enterobacteriaceae strains was not reported earlier from any part of the world. The phylogenetic analysis revealed a partial clonal relationship of β-lactamase sequences with the human clinical strains isolated from the Indian subcontinent., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2023 Bhowmick, Pal, Sunder, Sujatha, De, Mondal, Singh, Joardar, Batabyal, Dutta, Bandyopadhyay, Tiwari and Samanta.)- Published
- 2023
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163. Docking analysis of circulating CTX-M variants in multi-drug resistant, beta-lactamase and biofilm-producing E. coli isolated from pet animals and backyard livestock.
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Banerjee A, Pal S, Goswami P, Batabyal K, Joardar SN, Dey S, Isore DP, Dutta TK, Bandyopadhyay S, and Samanta I
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- Ampicillin, Animals, Anti-Bacterial Agents metabolism, Anti-Bacterial Agents pharmacology, Biofilms, Cefotaxime, Dogs, Humans, Livestock, Molecular Docking Simulation, Phylogeny, Sheep, beta-Lactam Resistance, beta-Lactamases genetics, beta-Lactamases metabolism, Escherichia coli metabolism, Escherichia coli Infections microbiology
- Abstract
The generation of antimicrobial-resistant bacteria largely depends on the use of antimicrobials not only in humans but also in pet animals and livestock. The present study was conducted to detect the occurrence of beta-lactamase and biofilm-producing- E.coli in healthy pet and backyard livestock. The study also intended on molecular docking experiments to confirm the nature of the catalytic mechanism in β-lactamase enzymes, encoded by the various bla
CTX-M genotypes and phylogenetic analysis to reveal clonal relationship of the animal origin E. coli isolates with human clinical strains. The rectal swabs were collected from healthy dogs (n = 254), cats (n = 108), sheep (n = 119) and goats (n = 143) in India. In total 247 (76.47%) E. coli strains were identified as ESBL producers. The possession of ESBL-producers was significantly more (p < 0.05) in pets than in the backyard livestock. Most of the strains possessed blaCTX-M-15 like clones. E. coli strains possessing blaCTX-M-15.2 , blaCTX-M-157 , blaCTX-M-181 and blaCTX-M-218 like clones, isolated from pets were not reported earlier. The study detected 56.65% of E. coli strains as moderate or strong biofilm producers possessing biofilm-associated genes (csgA, rcsA, rpoS, sdiA). ESBL-producing E. coli showed phenotypical resistance to tetracycline (93.1%), azithromycin (89.8%), ampicillin (84.2%), cefotaxime (80.9%), doxycycline (82.5%), co-trimoxazole (80.9%), ampicillin/cloxacillin (76.9%). The CTX-M variants obtained in this study were modelled by the SWISS-MODEL and verified. Ligand having minimum binding energy, show the highest affinity of β-lactamases for cefotaxime and cefpodoxime. The Gibbs free energy release for all 14 different complex ranges between -6.9 (CTX-M-15.2+cefpodoxime) to -5.3 (CTX-M-218+cefpodoxime) Kcal/mol. Phylogenetic analysis of the animal origin ESBL-E. coli strains revealed a partial clonal relationship with the clinical isolates of local human patients. The present study described the significant presence of biofilm and β-lactamase producing, multi-drug resistant E. coli in pet animals having public health importance., Competing Interests: Declaration of interests The authors declare the following financial interests/personal relationships which may be considered as potential competing interests: Indranil Samanta reports was provided by Department of Science & Technology and Biotechnology, Government of West Bengal (India)., (Copyright © 2022 Elsevier Ltd. All rights reserved.)- Published
- 2022
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164. Comparative occurrence of ESBL/AmpC beta-lactamase-producing Escherichia coli and Salmonella in contract farm and backyard broilers.
- Author
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Chowdhury M, Bardhan R, Pal S, Banerjee A, Batabyal K, Joardar SN, Mandal GP, Bandyopadhyay S, Dutta TK, Sar TK, and Samanta I
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- Animals, Anti-Bacterial Agents pharmacology, Bacterial Proteins, Chickens, Drug Resistance, Bacterial, Farms, Salmonella genetics, beta-Lactamases genetics, beta-Lactamases pharmacology, Escherichia coli, Escherichia coli Infections epidemiology, Escherichia coli Infections veterinary
- Abstract
The present study was conducted to detect the occurrence of beta-lactamase and biofilm-producing Escherchia coli and Salmonella in apparently healthy broiler birds reared in household and contract poultry farms. In total, 150 cloacal swabs were collected from apparently healthy broiler birds of various age groups reared in backyard (n = 100) and contract farms (n = 50) in West Bengal (India). The isolation rate of ESBL producers was significantly more (P < 0·05) reared in contract poultry farms than those reared in backyard. Majority of the E. coli isolates possessed bla
CTX-M followed by blaSHV and blaTEM . Majority of the Salmonella strains possessed blaTEM followed by blaCTX-M , and no blaSHV was detected. The selected sequences of the PCR products were found cognate with blaCTX-M-1 , blaCTX-M-2 , blaCTX-M-9 , blaCTX-M-14 , blaCTX-M-15 , blaSHV-12 and blaTEM-52 . The study detected 46·8% of E. coli and 42·5% of Salmonella strains as biofilm producers. Beta-lactamase-producing Enterobacteriaceae strains showed resistance against tetracycline, chloramphenicol, doxycycline, co-trimoxazole and ampicillin and sensitivity to imipenem-EDTA, colistin and gentamicin. The study revealed the partial clonal relationship of ESBL sequences possessed by the poultry isolates of the present study and local clinical isolates available in the database. The study made consumer awareness about careful handling of live birds or poultry meat to avoid the zoonotic transmission of antimicrobial-resistant Enterobacteriaceae., (© 2021 The Society for Applied Microbiology.)- Published
- 2022
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165. Multi-drug resistant, biofilm-producing high-risk clonal lineage of Klebsiella in companion and household animals.
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Banerjee A, Batabyal K, Singh AD, Joardar SN, Dey S, Isore DP, Sar TK, Dutta TK, Bandyopadhyay S, and Samanta I
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- Animals, Anti-Bacterial Agents pharmacology, Bacterial Proteins genetics, Bacterial Proteins metabolism, Cats microbiology, Cefotaxime pharmacology, Dogs microbiology, Goats microbiology, India, Klebsiella classification, Klebsiella enzymology, Klebsiella physiology, Klebsiella Infections drug therapy, Sheep, beta-Lactamases genetics, beta-Lactamases metabolism, Biofilms, Drug Resistance, Multiple, Bacterial, Klebsiella drug effects, Livestock microbiology, Pets microbiology
- Abstract
Antimicrobial resistance is a global emergency which needs one health approach to address. The present study was conducted to detect the prevalence of beta-lactamase and biofilm-producing Klebsiella strains in rectal swabs (n = 624) collected from healthy dogs, cats, sheep and goats reared as companion or household animals in India. The dogs and cats were frequently exposed to third- or fourth-generation cephalosporins for therapy. The sheep and goats were occasionally exposed to antibiotics and had environmental exposure. Phenotypical ESBL (n = 93) and ACBL (n = 88)-producing Klebsiella were isolated significantly more (P < 0·05) from companion animals than household animals. Majority of the Klebsiella possessed bla
CTX-M-15 . The sequences blaCTX-M-15.2 , blaCTX-M-197 and blaCTX-M-225 are reported first time from the companion animals. All ACBL-producing isolates possessed blaAmpC . The present study detected 65·8% of Klebsiella strains as biofilm producers possessing the studied biofilm associated genes. The isolates showed phenotypical resistance against chloramphenicol, tetracycline, doxycycline, co-trimoxazole, ampicillin, cefotaxime/clavulanic acid. The present study showed that companion and household animals (dogs, cats, sheep, goats) may act as a carrier of ESBL/biofilm-producing, multi-drug resistant, high-risk clonal lineage of Klebsiella., (© 2020 The Society for Applied Microbiology.)- Published
- 2020
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166. Characterization of beta-lactamase and biofilm producing Enterobacteriaceae isolated from organized and backyard farm ducks.
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Banerjee A, Bardhan R, Chowdhury M, Joardar SN, Isore DP, Batabyal K, Dey S, Sar TK, Bandyopadhyay S, Dutta TK, and Samanta I
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- Animals, Bacterial Proteins genetics, Drug Resistance, Bacterial, Enterobacteriaceae enzymology, Enterobacteriaceae genetics, Enterobacteriaceae isolation & purification, Enterobacteriaceae Infections epidemiology, Enterobacteriaceae Infections microbiology, Farms, Female, India epidemiology, Male, Phenotype, Poultry Diseases epidemiology, Biofilms growth & development, Ducks microbiology, Enterobacteriaceae physiology, Enterobacteriaceae Infections veterinary, Poultry Diseases microbiology, beta-Lactamases genetics
- Abstract
This study was undertaken to detect the occurrence of beta-lactamase and biofilm producing Enterobacteriaceae in healthy ducks. A total 202 cloacal swabs were collected from ducks kept in organized (n = 92) and backyard (n = 110) farms in West Bengal (India). The ducks had no history of antibiotic intake. Among the 87 phenotypically beta-lactamase producing Escherichia coli, 19 (17·43%), 6 (5·05%) and 15 (13·76%) isolates possessed bla
TEM , blaSHV and blaCTX-M respectively. Whereas, 5 (38·46%) Salmonella isolates were found to harbour blaCTX-M . In K. pneumoniae 10 (33·33%), 3 (13·33%), 4 (13·33%) isolates possessed blaTEM , blaSHV and blaCTX-M respectively. The sequences of selected PCR products were found 98% cognate with blaCTX-M-9, blaSHV-12 and blaTEM-1 . Beta-lactamase producing E. coli isolates belonged to 14 different serogroups such as O1, O2, O3, O5, O7, O8, O35, O83, O84, O88, O119, O128, O145 and O157. Moreover, 87 E. coli (79·82%), six Samonella (46·15%) and 13 K. pneumoniae (43·33%) isolates were detected as AmpC producers possessing blaAmpC . Majority of E. coli (46·79%), Salmonella (46·15%) and K. pneumoniae (70%) isolates were detected as biofilm producers and possessed the associated genes (csgA, sdiA, rcsA, rpoS). Significantly higher occurrence of beta-lactamase and biofilm producing Enterobacteriaceae isolates was detected in backyard ducks than organized farms. SIGNIFICANCE AND IMPACT OF THE STUDY: Consumption of antibiotic through feed or during therapy is considered as potential reason for generation of antimicrobial resistant bacteria in birds. This study provides valuable evidence that exposure to contaminated environment may be an additional source for generation of antimicrobial resistant bacteria in backyard ducks. The backyard ducks are reared by marginal farmers in India who cannot offer antibiotics to them either through feed or during therapy due to high cost. The study also reveals a significant correlation between biofilm formation and possession of antimicrobial resistance genes in the bacterial isolates from the ducks., (© 2019 The Society for Applied Microbiology.)- Published
- 2019
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167. Detection, characterization, and antibiogram of extended-spectrum beta-lactamase Escherichia coli isolated from bovine milk samples in West Bengal, India.
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Batabyal K, Banerjee A, Pal S, Dey S, Joardar SN, Samanta I, Isore DP, and Singh AD
- Abstract
Background: Milk is considered as complete food and an important part of human diet throughout the world including India. Bacterial contamination of milk such as Escherichia coli due to unhygienic condition and poor udder health can cause infections, especially in infants and elders or in immunocompromised persons. Possession of antimicrobial resistance genes by commensal bacteria present in milk makes the issue more serious., Aim: The study was aimed to isolate and characterize extended-spectrum beta-lactamase (ESBL)-producing E. coli from milk samples collected from different parts of West Bengal, India, to assess the potential risk associated with the food., Materials and Methods: Around 182 milk samples were collected from apparently healthy cows reared by organized dairy farms in West Bengal. E. coli was isolated from collected samples as per standard methods followed by serotyping. The detection of ESBL-producing E. coli was done both phenotypically and genotypically by detecting the presence of bla
CTX-M gene. Antibiogram of the ESBL-positive isolates was done using common 12 antibiotics by disc diffusion method., Results: A total of 22 (12.1%) samples were found to be positive for E. coli in this study. Different serotypes such as O11, O20, O22, O34, O35, O128, O149, and UT were isolated from the collected samples. 12 (54.5%) E. coli strains showed the capability of producing ESBL, both phenotypically and genotypically with the presence of blaCTX-M gene. Antibiogram of these ESBL-positive isolates revealed the drugs such as colistin (100%), levofloxacin (83.33%), and imipenem (66.67%) to be highly sensitive against this pathogen but drugs such as cefotaxime (100%), ceftazidime (91.67%), amoxicillin/clavulanic acid (83.33%), tetracycline (75.00%), and gentamicin (58.33%) to be very much resistant., Conclusion: More than 50% of the E. coli strains prevalent in the bovine milk samples were positive for ESBL production and are resistant to most of the common antimicrobials which may be alarming for human health.- Published
- 2018
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168. Characterization of Salmonella Gallinarum isolates from backyard poultry by polymerase chain reaction detection of invasion ( inv A) and Salmonella plasmid virulence ( spv C) genes.
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Pal S, Dey S, Batabyal K, Banerjee A, Joardar SN, Samanta I, and Isore DP
- Abstract
Aim: The aim was to characterize Salmonella enterica serovar Gallinarum isolated from backyard poultry by polymerase chain reaction (PCR) detection of virulence genes invasion ( inv A) and Salmonella plasmid virulence C ( spv C)., Materials and Methods: Two strains of Salmonella serovar Gallinarum isolates used in this study were obtained from an outbreak of fowl typhoid in backyard Vanaraja fowl. PCR technique was used for detection of inv A and spv C genes using standard methodology. The inv A PCR product from one representative isolate was sequenced and compared with other related Salmonella serovars in GenBank data., Results: Salmonella Gallinarum produced expected amplicons of inv A and spv C gene products. Nucleotide sequence of 285 bp inv A gene was deposited in GenBank with accession no. KX788214. Sequence analysis of inv A gene was found conserved in Salmonella serovars and demonstrated 100% homology with closely related serovars of Salmonella ., Conclusion: Invasion gene ( inv A) was found to be highly conserved in Salmonella Gallinarum and highly similar with closely related serovars. The isolates also contained plasmid-mediated spvC gene indicating possession of virulence plasmid.
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- 2017
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169. Detection and characterization of pathogenic Pseudomonas aeruginosa from bovine subclinical mastitis in West Bengal, India.
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Banerjee S, Batabyal K, Joardar SN, Isore DP, Dey S, Samanta I, Samanta TK, and Murmu S
- Abstract
Aim: Subclinical mastitis in bovines is mainly responsible for the huge economic loss of the dairy farmers, of which Pseudomonas aeruginosa is one of the causative agents. The study was aimed at a screening of suspected milk samples from different cattle farms of West Bengal for detection and confirmation of P. aeruginosa strains followed by their characterization., Materials and Methods: Around 422 milk samples were screened from different dairy farms primarily by on-spot bromothymol blue (BTB) test and then in the lab by somatic cell counts (SCC) to finally consider 352 samples for detection of P. aeruginosa . Selective isolation and confirmation of the isolates were done using selective media, viz ., cetrimide and Pseudomonas agar followed by confirmation by fluorescent technique. Molecular characterization of the strains was done by polymerase chain reaction for the presence of tox A (enterotoxin A, 352 bp) and exo S (exoenzyme S, 504 bp) genes., Results: Approximately, 371 (87.9%) samples were positive in on-spot BTB test among which 352 (94.8%) samples revealed high SCC values (more than 3 lakh cells/ml) showing infection when screened. Among these, 23 (6.5%) samples yielded typical Pseudomonas sp. isolates out of which only 19 (5.4%) isolates were confirmed to be P. aeruginosa which showed characteristic blue-green fluorescence due to the presence of pigment pyoverdin under ultraviolet light. Out of these 19 isolates, 11 isolates were positive for tox A, 6 isolates for exo S, and 2 for both these pathogenic genes., Conclusion: Approximately, 5.4% cases of bovine subclinical mastitis infections in South Bengal were associated with P. aeruginosa which possess pathogenic genes such as tox A (63.2%) and exo S (36.8%).
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- 2017
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170. Detection and characterization of zoonotic dermatophytes from dogs and cats in and around Kolkata.
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Murmu S, Debnath C, Pramanik AK, Mitra T, Jana S, Dey S, Banerjee S, and Batabyal K
- Abstract
Aim: The ringworms of pet dogs, cats, and stray animals (dogs, cats, and other animals) could be a potential source of zoonotic infections causing a serious public health problem in the busy city Kolkata. The pet owners are more susceptible to get this infection from their pets, because of the close contact with them as dermatophytosis is very much prevalent in those pets. So, this study was aimed to check the prevalence of dermatophytosis in dogs, cats, and in pet owners., Materials and Methods: A total of 362 clinically suspected cases of dermatophytosis from dogs (123 in number), cats (202 in number), and human beings (37 in number) were collected and studied from in and around Kolkata to detect the presence of significant dermatophytes. Direct microscopy and cultural examination of the isolates were performed following standard methodology. Identification and characterization of the isolates were done by different biochemical tests., Results: Samples (n=285) having significant dermatophytic fungal infections were found to be of highest number in cats (158, 55.5%) than in dogs (108, 37.8%) and humans (19, 6.7%), respectively. The incidence of Microsporum canis (60.0%) was the highest from affecting dogs, cats, and human beings in comparison to Microsporum gypseum (22.5%), Trichophyton mentagrophytes (15.8%) and Trichophyton rubrum (1.7%). Detection of T. rubrum was only from human cases in this study, whereas the presence of rest three were slightly higher in cats than that of the dogs and humans in this present study. The incidences were higher in young animals and in humans of the age group of 21-30 years, during the rainy season (from April to August) and also in in-contact human beings., Conclusion: M. canis was the most commonly pathogen among all causing dermatophytosis in animals and also in the pet owners. M. gypseum and T. mentagrophytes were other pathogens associated with these infections. These infections were more prevalent in the rainy seasons and in in-contact human patients or pet owners.
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- 2015
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171. Seroprevalence of bluetongue in ruminants of Jharkhand.
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Tigga P, Joardar SN, Halder A, Lodh C, Samanta I, Isore DP, Batabyal K, and Dey S
- Abstract
Aim: This study was carried out to assess the presence of anti-bluetongue (BT) antibodies in sheep, goat and cattle of different agro-climatic zones of Jharkhand., Materials and Methods: Serum samples were collected from apparently healthy as well as suspected sheep, goat and cattle from different districts of Jharkhand covering different agro-climatic zones. Serum samples were screened by indirect enzyme linked immunosorbent assay (iELISA) for detecting anti-BT antibodies., Results: Out of a total of 480 animal serum samples (sheep-190, goats-210 and cattle-80) screened, 83 (43.68%) of sheep, 91 (43.33%) of goat and 46 (57.50%) of cattle sera were found positive. The % positivity ranged between 41% and 51% in different agro-climatic zones. The results showed slight higher seroprevalence, although not significantly, in cattle than sheep and goats in different agro-climatic zones of Jharkhand., Conclusions: The above data indicate widespread prevalence of BT virus antibodies in studied areas. The incidence of BT is not detected officially, so far. The present seroprevalence status of BT in Jharkhand indicates presence of BT infection in the state for the first time.
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- 2015
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172. Serogroup distribution and virulence characteristics of sorbitol-negative Escherichia coli from food and cattle stool.
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Manna SK, Manna C, Batabyal K, Das B, Golder D, Chattopadhyay S, and Biswas BK
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- Animals, Cattle, Culture Media, Escherichia coli isolation & purification, Escherichia coli pathogenicity, Hymecromone analogs & derivatives, Hymecromone metabolism, Meat microbiology, Milk microbiology, Serotyping, Sorbitol metabolism, Virulence, Escherichia coli classification, Feces microbiology, Food Contamination, Food Microbiology
- Abstract
Aims: To (i) study the serogroup distribution and virulence characteristics of non-sorbitol-fermenting Escherichia coli isolates from foods of animal origin and cattle faeces and (ii) re-examine the true sorbitol and beta-D-glucuronidase (GUD) reactions of sorbitol-negative (Sor(-)) strains from MacConkey sorbitol agar (SMAC) to assess their phenotypic similarity with E. coli O157., Methods and Results: One hundred and thirty Sor(-)E. coli were isolated from 556 food samples and 177 cattle stool samples using cefixime tellurite-supplemented SMAC (CT-SMAC) and chromogenic HiCrome MS.O157 agar respectively. Based on typing of somatic antigen, the isolates were classified into 38 serogroups. PCR results identified about 40% strains, belonging to O5, O8, O20, O28, O48, O60, O78, O82, O84, O101, O110, O123, O132, O156, O157, O-rough and OUT as Shiga toxigenic. Majority of O5, O84, O101, O105, O123, O157, O-rough and OUT strains were enterohaemolytic. Further, 39.2% and 63.1% of Sor(-) isolates from CT-SMAC fermented sorbitol in phenol red broth and hydrolysed 4-methylumbelliferyl-beta-D-glucuronide (MUG) respectively. Members of serogroups O5, O28, O32, O81, O82, O84, O101, O-rough lacked both the sorbitol fermentation (broth test) and GUD activity and might create confusion in phenotypic identification of E. coli O157., Conclusions: Sor(-)E. coli isolates from raw meat, milk, shrimp and cattle stool belonged to 38 serogroups, with E. coli O157 constituting only 14.6% of the isolates. Many of these nonclinical Sor(-) strains were potentially pathogenic. Nearly 39% of these Sor(-)E. coli from CT-SMAC fermented sorbitol in broth, indicating the need for confirmation of sorbitol reaction in broth., Significance and Impacts of the Study: Classical sorbitol utilization and GUD tests are not likely definitive tests for E. coli O157. Further improvement of differential media based on these phenotypic properties is necessary for detection of pathogenic serotypes from foods and environmental samples.
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- 2010
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173. Occurrence, virulence characteristics and antimicrobial resistance of Escherichia coli O157 in slaughtered cattle and diarrhoeic calves in West Bengal, India.
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Manna SK, Brahmane MP, Manna C, Batabyal K, and Das R
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- Animals, Cattle, DNA, Bacterial genetics, Escherichia coli O157 isolation & purification, Escherichia coli O157 pathogenicity, India, Microbial Sensitivity Tests, Polymerase Chain Reaction, Shiga Toxin genetics, Virulence genetics, Drug Resistance, Bacterial genetics, Escherichia coli O157 genetics, Feces microbiology
- Abstract
Aims: (i) To study the occurrence of Escherichia coli serotype O157 in cattle stool in West Bengal, India, and (ii) the virulence properties and antimicrobial resistance of the E. coli isolates., Methods and Results: Following enrichment in modified EC broth and plating onto HiCrome MS.O157 agar, a total of 14 strains of E. coli serotype O157 was isolated from faecal samples from two (2.04%) slaughtered cattle and six (7.59%) diarrhoeic calves. By multiplex PCR, Shiga toxin genes were detected in all the isolates. The enterohaemolysin phenotype was found in all, but one strain. Among 14 strains, ten were resistant to at least one of the antimicrobial agents tested. Multiple antibiotic resistance was frequent., Conclusions: The study showed that occurrence of Shiga toxin-producing and multiple antibiotic-resistant E. coli O157 among cattle population in this region of India is significant., Significance and Impact of the Study: Considering routine human contacts with cattle, a large human population in this region may be at risk for exposure to Shiga toxin-producing E. coli O157.
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- 2006
- Full Text
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