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Selenophene and thiophene capped cyclopenta[c]selenophenes were synthesized and characterized. Crystal structure determination of some representative compounds revealed that the substitution at 3,4-position in the form of cyclopentane ring of selenophene or thiophene does not make any significant twist in the trimer backbone, making the cooligomer nearly planar. All the cooligomers were electrochemically polymerized and compared with thiophene capped cyclopenta[c]thiophene polymer. DFT calculations predict that the cyclopentane substitution on the third repeating unit (and in general) of one dimensional polymer neither disturb the planarity nor causes any significant twist on the polymeric backbone unlike the 3,4-dialkyl substitution. The electrochemically prepared selenophene based polymers showed low band gap compared to that of thiophene analogues. Cyclopentane substitution on selenophene as well as thiophene makes the resulting polymer oxidatively more stable when compared to more familiar poly-ethylenedioxythiophene (PEDOT) or poly-ethylenedioxyselenophene (PEDOS) systems. Alternate polymers of cyclopenta[c]selenophenes (CPS)/cyclopenta[c]thiophene (CPT) and thiophene/selenophene possess the energy of HOMO and LUMO significantly lower than that of homopolymers of CPS and CPT, however, possess higher band gap than PCPS.

A one-pot Yb(III)-mediated cascade reaction has been developed leading to small molecules based on a novel structural motif, i.e. quinazolin-4-one moiety fused with an isoquinoline ring, for potential inhibition of TNF-α., (This journal is © The Royal Society of Chemistry 2011)

Single crystals of γ-glycine, an organic nonlinear optical material have been synthesized in the presence of potassium fluoride (KF) by slow evaporation technique at ambient temperature. The size of the grown crystal is up to the dimension of 12 mm×10 mm×8 mm. The γ-phase was confirmed by single crystal X-ray diffraction, powder XRD and the FTIR analysis. Optical absorption spectrum reveals that the grown crystal has good optical transparency in the entire visible region with an energy band gap of 5.09 eV, which is an essential requirement for a nonlinear optical crystal. Thermal stability of the grown γ-glycine crystal was determined using the thermo gravimetric and differential thermal analyses. The NLO activity of γ-glycine was confirmed by the Kurtz powder technique using Nd:YAG laser and the grown crystal exhibits high relative conversion efficiency when compared to potassium dihydrogen phosphate (KDP)., (Copyright © 2011 Elsevier B.V. All rights reserved.)

18α(H)-, 18β(H)-oleanane and lupane are angiosperm-derived biomarkers that are used as age indicators for the Late Cretaceous onwards when the first proliferation of angiosperms occurred. In addition, the 18α(H)-/18β(H)-oleanane ratio is employed as a thermal maturity parameter of crude oil. However, evidence has shown that accurate quantification of these compounds has been impeded by inadequate chromatographic separation by traditional one-dimensional gas chromatography. In this study, we present the separation of 18α(H)-, 18β(H)-oleanane and lupane with comprehensive two-dimensional gas chromatography (GC×GC). Furthermore, it was observed that 18β(H)-oleanane elutes earlier than 18α(H)-oleanane in second dimension (polarity) which we attribute to steric hindrance effects. Two GC conditions have been developed in order to achieve baseline separation of the triterpenoids of interest in complex mixtures such as sediment extracts and crude oils., (Copyright © 2011 Elsevier B.V. All rights reserved.)

To understand the spatial variation in concentrations and compositions of organic micropollutants in marine plastic debris and their sources, we analyzed plastic fragments (∼10 mm) from the open ocean and from remote and urban beaches. Polychlorinated biphenyls (PCBs), polycyclic aromatic hydrocarbons (PAHs), dichloro-diphenyl-trichloroethane and its metabolites (DDTs), polybrominated diphenyl ethers (PBDEs), alkylphenols and bisphenol A were detected in the fragments at concentrations from 1 to 10,000 ng/g. Concentrations showed large piece-to-piece variability. Hydrophobic organic compounds such as PCBs and PAHs were sorbed from seawater to the plastic fragments. PCBs are most probably derived from legacy pollution. PAHs showed a petrogenic signature, suggesting the sorption of PAHs from oil slicks. Nonylphenol, bisphenol A, and PBDEs came mainly from additives and were detected at high concentrations in some fragments both from remote and urban beaches and the open ocean., (Copyright © 2011 Elsevier Ltd. All rights reserved.)

A sequential Pd-mediated multi-component reaction followed by Suzuki or Heck or Sonogashira coupling in a single pot has been developed for the synthesis of functionalized pyrroles as potential inhibitors of PDE4.

New bis (alkyl) selenosalen podand ligands having Se2N2 donor sites have been synthesized by the condensation of unsymmetrical o-formylphenyl alkyl selenide (1-3) with ethylenediamine. The reaction of bis(alkyl)selenosalen podands with Pd(II) and Pt(II) afforded selenoether-selenolate coordination complexes 7-10via cleavage of one of the two Se-C(alkyl) bonds of bis(alkyl)selenosalen podands upon complexation. DFT calculations revealed that the cleavage of Se-C(alkyl) bonds occurred possibly via S(N)2 mechanism instead of a sequence of oxidative addition and reductive elimination reactions. The spectral data and elemental analyses confirmed the formation of selenoether-selenolate complexes. The structures of the podands N,N'-bis[(2-methylseleno)phenylmethylene]-1,2-ethanediamine (4), N,N'-bis[(2-decylseleno)phenylmethylene]-1,2-ethanediamine (5) and the selenoether-selenolate complex 8 have been determined by single crystal X-ray diffraction analysis. The crystal structure of 5 showed SeH interaction with a ladder like 3D supramolecular arrangement via interdigitation of long alkyl chains. Comparison of crystal packing of podands 4 and 5 indicates that the alkyl chain length has significant impact on the crystal packing. The platinum selenolate complex 8 shows a square planar arrangement around the Pt centre, where the Se atoms in the selenolate and the selenoether have nearly equal Pt-Se bond length., (This journal is © The Royal Society of Chemistry 2011)

Concurrent construction of five and six membered fused N-heretocyclic ring was achieved via a conceptually new three-component reaction affording 6,6a-dihydroisoindolo[2,1-a]quinazoline-5,11-diones as novel inhibitors of TNF-αin vitro. This represents one of the few examples of direct TNF-α inhibition by small molecules., (© The Royal Society of Chemistry 2011)

The accurate establishment of oil similarity is a longstanding problem in petroleum geochemistry and a necessary component for resolving the architecture of an oil reservoir. Past limitations have included the excessive reliance on a relatively small number of biomarkers to characterize such complex fluids as crude oils. Here we use multiway principal components analysis (MPCA) on large numbers of specific chemical components resolved with comprehensive two-dimensional gas chromatography-flame ionization detection (GC×GC-FID) to determine the molecular relatedness of eight different maltene fractions of crude oils. MPCA works such that every compound eluting within the same first and second dimension retention time is quantitatively compared with what elutes at that same retention times within the other maltene fractions. Each maltene fraction and corresponding MPCA analysis contains upwards of 3500 quantified components. Reservoir analysis included crude oil sample pairs from around the world that were collected sequentially at depth within a single well, collected from multiple depths in the same well, and from different depths and different wells but thought to be intersected by the same permeable strata. Furthermore, three different regions of each GC×GC-FID chromatograms were analysed to evaluate the effectiveness of MPCA to resolve compositional changes related to the source of the oil generating sediments and its exposure to biological and/or physical weathering processes. Compositional and instrumental artefacts introduced during sampling and processing were also quantitatively evaluated. We demonstrate that MPCA can resolve multi-molecular differences between oil samples as well as provide insight into the overall molecular relatedness between various crude oils., (Copyright © 2011 Elsevier B.V. All rights reserved.)

Considerable debate surrounds the sources of oxygenated polybrominated diphenyl ethers (O-PBDEs) in wildlife as to whether they are naturally produced or result from anthropogenic industrial activities. Natural radiocarbon ((14)C) abundance has proven to be a powerful tool to address this problem as recently biosynthesized compounds contain contemporary (i.e. modern) amounts of atmospheric radiocarbon; whereas industrial chemicals, mostly produced from fossil fuels, contain no detectable (14)C. However, few compounds isolated from organisms have been analyzed for their radiocarbon content. To provide a baseline, we analyzed the (14)C content of four O-PBDEs. These compounds, 6-OH-BDE47, 2'-OH-BDE68, 2',6-diOH-BDE159, and a recently identified compound, 2'-MeO-6-OH-BDE120, were isolated from the tropical marine sponges Dysidea granulosa and Lendenfeldia dendyi. The modern radiocarbon content of their chemical structures (i.e. diphenyl ethers, C(12)H(22)O) indicates that they are naturally produced. This adds to a growing baseline on, at least, the sources of these unusual compounds., (Copyright © 2011 Elsevier Ltd. All rights reserved.)

Thermal treatments of feedstock gases (e.g., C(2)H(4)/H(2)) used during carbon nanotube (CNT) synthesis result in the formation of a complex mixture of volatile organic compounds and polycyclic aromatic hydrocarbons. Some of these are likely important CNT precursors, while others are superfluous and possibly degrade product quality, form amorphous carbon, and/or contribute to growth termination. To simulate the effect of thermal treatment without this chemical complexity, we delivered trace amounts of individual hydrocarbons, along with ethylene and hydrogen, to a cold-wall atmospheric pressure reactor containing a locally heated metal catalyst (Fe on Al(2)O(3)). Using these compound-specific experiments, we demonstrate that many alkynes (e.g., acetylene, methyl acetylene, and vinyl acetylene) accelerate multiwalled CNT formation with this catalyst system. Furthermore, ethylene is required for enhanced CNT growth, suggesting that the alkyne and ethylene may react in concert at the metal catalyst. This presents a distinct CNT formation mechanism where the chemical precursors may be intact during C-C bond formation, such as in polymerization reactions, challenging the widely accepted hypothesis that precursors completely dissociate into C (or C(2)) units before "precipitating" from the metal. Armed with these mechanistic insights, we were able to form high-purity CNTs rapidly with a 15-fold improvement in yield, a 50% reduction in energetic costs, and order of magnitude reduction in unwanted byproduct formation (e.g., toxic and smog-forming chemicals and greenhouse gases).

Understanding the fate of heavy fuel oils (HFOs) in the environment is critical for sound decisions regarding its usage and spill cleanup. To study weathering of HFOs, we examined the M/V Cosco Busan spill (November 2007; San Francisco Bay, CA, USA). In this baseline report, we identified which ruptured tank (port tank 3 or 4) was the source of the spilled oil and characterized changes in the oil composition across location and time. Samples from three impacted shorelines, collected within 80 days of the spill, were analyzed using one- and two-dimensional gas chromatography (GC and GC × GC, respectively). Weathering varied across sites, but compounds with GC retention times less than n-C(16) were generally lost by evaporation and dissolution. Changes in n-C(18)/phytane and benz[a]anthracene/chrysene ratios indicated some biodegradation and photodegradation, respectively., (Copyright © 2010 Elsevier Ltd. All rights reserved.)

Persistent organic pollutants such as halogenated aromatic hydrocarbons (HAHs) biomagnify in food webs and accumulate to high concentrations in top predators like odontocete cetaceans (toothed whales). The most toxic HAHs are the 2,3,7,8-substituted halogenated dibenzo-p-dioxins and furans, and non-ortho-substituted polychlorinated biphenyls (PCBs), which exert their effects via the aryl hydrocarbon receptor (AHR). Understanding the impact of HAHs in wildlife is limited by the lack of taxon-specific information about the relative potencies of toxicologically important congeners. To assess whether Toxic Equivalency Factors (TEFs) determined in rodents are predictive of HAH relative potencies in a cetacean, we used beluga and mouse AHRs expressed in vitro from cloned cDNAs to measure the relative AHR-binding affinities of ten HAHs from five different structural classes. The rank order of mean IC(50)s for competitive binding to beluga AHR was: TCDD

The Deepwater Horizon blowout is the largest offshore oil spill in history. We present results from a subsurface hydrocarbon survey using an autonomous underwater vehicle and a ship-cabled sampler. Our findings indicate the presence of a continuous plume of oil, more than 35 kilometers in length, at approximately 1100 meters depth that persisted for months without substantial biodegradation. Samples collected from within the plume reveal monoaromatic petroleum hydrocarbon concentrations in excess of 50 micrograms per liter. These data indicate that monoaromatic input to this plume was at least 5500 kilograms per day, which is more than double the total source rate of all natural seeps of the monoaromatic petroleum hydrocarbons in the northern Gulf of Mexico. Dissolved oxygen concentrations suggest that microbial respiration rates within the plume were not appreciably more than 1 micromolar oxygen per day.

This study reports the first inventory of physical properties of individual plastic debris in the North Atlantic. We analyzed 748 samples for size, mass, and material composition collected from surface net tows on 11 expeditions from Cape Cod, Massachusetts to the Caribbean Sea between 1991 and 2007. Particles were mostly fragments less than 10mm in size with nearly all lighter than 0.05 g. Material densities ranged from 0.808 to 1.24 g ml(-1), with about half between 0.97 and 1.04 g ml(-1), a range not typically found in virgin plastics. Elemental analysis suggests that samples in this density range are consistent with polypropylene and polyethylene whose densities have increased, likely due to biofouling. Pelagic densities varied considerably from that of beach plastic debris, suggesting that plastic particles are modified during their residence at sea. These analyses provide clues in understanding particle fate and potential debris sources, and address ecological implications of pelagic plastic debris., (Copyright © 2010 Elsevier Ltd. All rights reserved.)

Plastic marine pollution is a major environmental concern, yet a quantitative description of the scope of this problem in the open ocean is lacking. Here, we present a time series of plastic content at the surface of the western North Atlantic Ocean and Caribbean Sea from 1986 to 2008. More than 60% of 6136 surface plankton net tows collected buoyant plastic pieces, typically millimeters in size. The highest concentration of plastic debris was observed in subtropical latitudes and associated with the observed large-scale convergence in surface currents predicted by Ekman dynamics. Despite a rapid increase in plastic production and disposal during this time period, no trend in plastic concentration was observed in the region of highest accumulation.

Halogenated 1'-methyl-1,2'-bipyrroles (MBPs) are putative marine natural products that accumulate in marine mammal blubber in similar concentrations and patterns to biomagnifying organic pollutants. Here we measure concentrations of MBPs and 2,2',4,4',5,5'-hexachlorobiphenyl (CB-153) in 40 samples composed of eight fish species, two squid species, and six species of marine mammals. To determine their trophic positions and to further investigate influence of prey preference, we also measured the stable carbon and nitrogen isotopic compositions of all samples. Our results show that lipid-normalized MBP concentrations increase with increasing trophic level; therefore, MBPs qualify as another class of biomagnifying marine natural products. The presence of MBPs in pinniped prey and absence in pinniped blubber suggests that these mammals share dietary exposure to MBPs with odontocetes but have an enhanced ability to metabolize these natural products.

Various brominated flame retardants (BFRs), including polybrominated diphenyl ethers (PBDEs) and current-use, non-PBDE BFRs, as well as organochlorine (OC) pesticides and polychlorinated biphenyls (PCBs), were measured in winter flounder, harp and hooded seals, and North Atlantic right whales from the Eastern United States and Canada. The concentrations of PBDEs in winter flounder and right whales were similar in magnitude to the levels of PCBs, which was unlike the pattern observed in seals. In these marine mammals, the levels of PBDEs were orders of magnitude lower than the levels of OCs and PCBs detected. Evidence existed for the accumulation of methoxylated (MeO)-PBDEs of natural origin in seals and right whales. Current-use, non-PBDE BFRs (including hexabromocyclododecane, pentabromoethylbenzene, hexabromobenzene, and pentabromotoluene) were detected in winter flounder and marine mammals. Future research should focus on monitoring PBDEs, current-use, non-PBDE BFRs, and MeO-BDEs of natural origin in marine organisms from Massachusetts and Cape Cod Bays., (Copyright 2010 Elsevier Ltd. All rights reserved.)

Bacterial Lipopolysaccharide (LPS) induced inflammation is implicated in the infection associated testicular tissue damage. Earlier, using a LPS induced acute endotoxemic rat model, we have shown the involvement of inflammation-induced oxidative stress in the impaired steroidogenesis and spermatogenesis. In the present study, we report a significant induction (more than 2-fold) of stress response proteins HSP-60, HMGB-1 and 2 in the testes, as early as 6 h after LPS injection with a later decrease. This induction of acute stress is closely followed by a significant reduction (74%) in Bcl2/Bax ratio along with leakage of cytochrome c (3 fold increase, p < 0.05) from mitochondria and increased caspase-3 activity levels (2.9 fold, p < 0.05) at 12 h and 24 h post LPS injection respectively. Further studies on PARP cleavage revealed a pattern similar to necrotic death during early periods (3 h to 24 h) and apoptosis at later periods (24 h to 72 h) after LPS treatment. In conclusion, the present study shows the involvement of stress response proteins and mitochondrial dysfunction in LPS-induced germ cell death in male rats.

Background & Objective: Pirimiphos-methyl, an organophosphorus insecticide is known to overcome resistance mechanisms of mosquitoes to other organophosphates. Information on the duration of efficacy of pirimiphos-methyl (50% emulsifiable concentrate) for the control of immatures of Culex quinquefasciatus, the vector of bancroftian filariasis, is scanty and hence site specific field trials are necessary to determine the field dosage. Pirimiphos-methyl (50% EC) was tested for its efficacy in cesspits and drains against the immatures of Cx. quinquefasciatus at Puducherry, an endemic area for filariasis, south India., Methods: In cesspits, Pirimiphos-methyl (50% EC) was tested at the dosage of 25, 50, 100 and 200 g(ai)/ ha and in drains at 50, 100 and 200 g(ai)/ha. Immature density during pre-treatment and post-treatment periods was recorded and the efficacy was determined by calculating percentage reduction in larval and pupal densities for a period of about one month., Results: In cesspits, application of the insecticide at 25 and 50 g(ai)/ha reduced the density of larvae by >80 per cent for 2-4 days only, whereas at 100 and 200 g(ai)/ha, the efficacy lasted for 7-8 days. More than 80 per cent reduction was observed in pupal density for 4 days at 50 g(ai)/ha and for 10-12 days at 100 and 200 g(ai)/ha respectively. In drains treated with 50 g (ai)/ha, >or=80 per cent reduction in larval density was recorded up to 3(rd) day post-treatment. The efficacy showing >or=80 per cent reduction in larval density lasted for 12-13 days and the same in pupal density lasted for 10-12 days at 100 and 200 g(ai)/ha., Interpretation & Conclusion: At the dosages of 100 and 200 g(ai)/ha, pirimiphos-methyl (50% EC) showed no difference in the control of larvae of Cx. quinquefasciatus in cesspits and drains. Pirimiphosmethyl may be applied at the field dosage of 100 g (ai)/ha at 10 day-intervals in the larval habitats of Cx. quinquefasciatus to achieve >80 per cent reduction in immature density.

The carbon nanotube (CNT) industry is expanding rapidly, yet little is known about the potential environmental impacts of CNT manufacture. Here, we evaluate the effluent composition of a representative multiwalled CNT synthesis by catalytic chemical vapor deposition (CVD) in order to provide data needed to design strategies for mitigating any unacceptable emissions. During thermal pretreatment of the reactant gases (ethene and H(2)), we found over 45 side-products were formed, including methane, volatile organic compounds (VOCs), and polycyclic aromatic hydrocarbons (PAHs). This finding suggests several environmental concerns with the existing process, including potential discharges of the potent greenhouse gas, methane (up to 1.7%), and toxic compounds such as benzene and 1,3-butadiene (up to 36000 ppmv). Extrapolating these laboratory-scale data to future industrial CNT production, we estimate that (1) contributions of atmospheric methane will be negligible compared to other existing sources and (2) VOC and PAH emissions may become important on local scales but will be small when compared to national industrial sources. As a first step toward reducing such unwanted emissions, we used continuous in situ measures of CNT length during growth and sought to identify which thermally generated compounds correlated with CNT growth rate. The results suggested that, in future CNT production approaches, key reaction intermediates could be delivered to the catalyst without thermal treatment. This would eliminate the most energetically expensive component of CVD synthesis (heating reactant gases), while reducing the formation of unintended byproducts.

Locating areas of seafloor contamination caused by heavy oil spills is challenging, in large part because of observational limitations in aquatic subsurface environments. Accepted methods for surveying and locating sunken oil are generally slow, labor intensive and spatially imprecise. This paper describes a method to locate seafloor contamination caused by heavy oil fractions using in situ mass spectrometry and concurrent acoustic navigation. We present results of laboratory sensitivity tests and proof-of-concept evaluations conducted at the US Coast Guard OHMSETT national oil spill response test facility. Preliminary results from a robotic seafloor contamination survey conducted in deep water using the mass spectrometer and a geo-referenced acoustic navigation system are also described. Results indicate that this technological approach can accurately localize seafloor oil contamination in real-time at spatial resolutions better than a decimeter.

Concentrations of several congeners and classes of organohalogen contaminants (OHCs) and/or their metabolites, namely organochlorine pesticides (OCs), polychlorinated biphenyls (PCBs), hydroxylated-PCBs (OH-PCBs), methylsulfonyl-PCBs (MeSO(2)-PCBs), polybrominated diphenyl ether (PBDE) flame retardants, and OH-PBDEs, were measured in cerebrospinal fluid (CSF) of short-beaked common dolphins (n = 2), Atlantic white-sided dolphins (n = 8), and gray seal (n = 1) from the western North Atlantic. In three Atlantic white-sided dolphins, cerebellum gray matter (GM) was also analyzed. The levels of OCs, PCBs, MeSO(2)-PCBs, PBDEs, and OH-PBDEs in cerebellum GM were higher than the concentrations in CSF. 4-OH-2,3,3',4',5-pentachlorobiphenyl (4-OH-CB107) was the only detectable OH-PCB congener present in CSF. The sum (Sigma) OH-PCBs/Sigma PCB concentration ratio in CSF was approximately two to three orders of magnitude greater than the ratio in cerebellum GM for dolphins.

Black carbon (BC), the soot and char formed during incomplete combustion of fossil and biomass fuels, is ubiquitous, participates in diverse environmental processes, and has adverse effects on human health. However, uncertainty persists regarding how accurately the present measurement methods quantify total BC or even defined subportions of the BC continuum. Hence, we sought to improve this situation by developing a new, low-sample manipulation methodology that does not require any oxidative or pyrolytic treatments but rather differentiates BC from other non-BC organic carbon (OC) using its sorbent properties. The procedure, referred to as the pyrene fluorescence loss (PFL) method, infers BC concentrations in particulate organic matter (POM) by observing the decrease in fluorescence from pyrene spiked into aqueous POM suspensions. The method was first tested using diverse materials previously utilized in an international BC method intercomparison study, and then its effectiveness (e.g., sensitivity and geochemical reasonableness) was tested by applying itto sediment and seawater POM samples collected from a coastal area downwind of important BC sources. Parallel evaluation of BC, using the PFL method and CTO-375 procedure, suggested we can characterize the predominant BC in a given sample as (i) thermally recalcitrant and highly sorptive per mass (e.g., soot), (ii) thermally labile and highly sorptive per mass (e.g., char), or (iii) thermally recalcitrant but not highly sorptive (e.g., lignite coal).

The Coal Oil Point (COP) seeps offshore Goleta, CA, are estimated to release 20-25 tons of oil daily, providing an ideal natural laboratory to investigate the fate of oil in the coastal ocean. To address the long-term fate of COP oil, we collected 15 sediment samples down current from the seeps and quantified petroleum content and individual biomarkers using traditional and comprehensive two-dimensional gas chromatography. Similarities in the distributions of hopane biomarkers link the oil in the sediments to fresh seep oil (n=5) and underlying reservoirs (n=3), although sediment oil is heavily weathered. The spatial distribution of oil forms a plume along the continental shelf that we suggest represents a chronic fallout pattern for heavy oil from the persistent surface slicks; average surface currents appear to modulate the distribution of the fallout over a period of 0.4-5 days. The extent of hydrocarbon loss is consistent for all sediments, indicating a common limit to oil weathering with contributions from evaporation, biodegradation, and dissolution. Considering the amount of oil and quantity of sediment impacted, we estimate a sediment oil burden of 0.3 x 10(12) to 3 x 10(12) g in the study area, equivalent to 8-80 spills of the Exxon Valdez accident of 1989.

Most analytical methods for persistent organic pollutants (POPs) focus on individual groups of targeted analytes. Therefore, analysis of multiple classes of POPs typically entails several sample preparations, fractionations, and injections, whereas other chemicals of possible interest are neglected or lost. To analyze a wider scope of organic contaminants in fish oil, we developed an approach to combine the analysis of targeted and untargeted chemicals using an automated direct sample introduction (DSI) and comprehensive two-dimensional gas chromatography with time-of-flight mass spectrometry (GC x GC/ ToF-MS). DSI-GC x GC/ToF-MS is a powerful tool that attains high quality separations to achieve high selectivity while still providing a wide analytical scope with minimal sample preparation, especially in conjunction with DSr's high tolerance to dirty extracts. Gel permeation chromatography (GPC) was used for initial separation of lipids from POPs and other GC-amenable organic compounds from dietary cod liver oil. For comparison purposes, additional cleanup of the GPC extracts was done by silica adsorption and acidification, which helped provide clues in the identification of untargeted compounds, but in routine analysis, only GPC is needed for this analytical approach. The approach allowed simultaneous identification of known-POPs in the fish liver oils, and further permitted presumptive identifications of multiple groups of halogenated natural products (HNPs) and other organic chemicals of interest through comparisons of the mass spectra from analyses with those from mass spectral libraries and/or reports in the literature (approximately 60 PCB congeners and 76 compounds in total). Subsequent confirmations were made by reanalysis and comparison of chromatographic retention times and mass spectra with contemporaneously analyzed reference standards. Otherwise, ion fragmentation patterns of unknown compounds were assessed for tentative identifications. Some of the HNPs in the fish oils were detected and identified for the first time. Our study demonstrates that the wide monitoring scope provided by the DSI-GC x GC/ToF-MS method after GPC provides many logistical and performance advantages over the conventional use of several different methods designed for individual classes of targeted analytes after extensive sample preparation.

We successfully optimized an analytical method using gel permeation chromatography followed by direct sample introduction comprehensive two-dimensional gas chromatography with time-of-flight mass spectrometry to quantify multiple groups of targeted persistent organic pollutants and halogenated natural products (HNPs) simultaneously in fish oil samples. This new method has a wider analytical scope than the traditional approach to use multiple methods to cover each class of compounds. Our analysis revealed that the relatively more volatile and lighter organic compounds, such as polychlorinated biphenyls (PCBs), organochlorine pesticides, and other smaller organohalogen compounds, were still present in two brands of "PCB-free" cod liver oils, albeit at much lower levels than in an untreated commercial sample. Moreover, the less volatile organic compounds, such as polybrominated diphenyl ethers and brominated HNPs, were detected at similar levels in all three cod liver oils. This suggests that the commercial molecular distillation treatment used for removal of organic/inorganic toxic contaminants is only effective for the lighter organic contaminants.

The halogenated 1'-methyl-1,2'-bipyrroles (MBPs) are a suite of marine natural products that have been detected in marine mammals worldwide. Although their concentrations are similar to persistent organic pollutants that biomagnify, such as 2,2',4,4',5,5'-hexachlorobiphenyl (CB-153), it is notyet clearthat these natural products also biomagnify. Here we analyze MBPs and CB-153 isolated from the blubber and liver of marine mammals stranded on the eastern coast of Massachusetts. Four odontocete species (Delphinus delphis, Lagenorhynchus acutus, Phocoena phocoena, and Globicephala melas) and two pinniped species (Halichoerus grypus and Phoca groenlandica) were sampled. MBPs were present in all odontocetes, but not detected in pinnipeds; CB-153 was detected in every species. MBP patterns indicative of biomagnification were found, including age-dependent concentration increases and reduced concentrations in adult females. Also explored were the similarities and differences with CB-153, the effects of nutritional state on contaminant distribution, and the maternal transfer of blubber-based organic contaminants.

Natural seeps contribute nearly half of the oil entering the coastal ocean. However, environmental fate studies generally monitor fewer than 5% of these petroleum compounds. Hence, the rates and relevance of physical, chemical, and biological weathering processes are unknown for the large majority of hydrocarbons, both released from natural seeps and also from human activities. To investigate the specific compositional changes occurring in petroleum during subsurface degradation and submarine seepage, we studied the natural oil seeps offshore Santa Barbara, California with comprehensive, two-dimensional gas chromatography (GC x GC). With this technique, we quantified changes in the molecular diversity and abundance of hydrocarbons between subsurface reservoirs, a proximal sea floor seep, and the sea surface overlying the seep. We also developed methods to apportion hydrocarbon mass losses due to biodegradation, dissolution, and evaporation, for hundreds of tracked compounds that ascended from the subsurface to the sea floor to the sea surface. The results provide the first quantitative evidence of broad metabolic specificity for anaerobic hydrocarbon degradation in the subsurface and reveal new trends of rapid hydrocarbon evaporation at the sea surface. This study establishes GC x GC as a powerful technique for differentiating biological and physical weathering processes of complex mixtures at a molecular level.

Bacteriochlorophylls (BChls) c, d, and e are the main light-harvesting pigments of green photosynthetic bacteria that self-assemble into nanostructures within the chlorosomes forming the most efficient antennas of photosynthetic organisms. All previous models of the chlorosomal antennae, which are quite controversially discussed because no single crystals could be grown so far from these organelles, involve a strong hydrogen-bonding interaction between the 3(1) hydroxyl group and the 13(1) carbonyl group. We have synthesized different self-assemblies of BChl c mimics having the same functional groups as the natural counterparts, that is, a hydroxyethyl substituent, a carbonyl group and a divalent metal atom ligated by a tetrapyrrole. These artificial BChl mimics have been shown by single crystal x-ray diffraction to form extended stacks that are packed by hydrophobic interactions and in the absence of hydrogen bonding. Time-resolved photoluminescence proves the ordered nature of the self-assembled stacks. FT-IR spectra show that on self-assembly the carbonyl frequency is shifted by approximately 30 cm(-1) to lower wavenumbers. From the FT-IR data we can infer the proximal interactions between the BChls in the chlorosomes consistent with a single crystal x-ray structure that shows a weak electrostatic interaction between carbonyl groups and the central zinc atom.

Hydrophobic organic contaminants (HOCs) are associated with natural organic matter (OM) in the environment via mechanisms such as sorption or chemical binding. The latter interactions are difficult to quantitatively constrain, as HOCs can reside in different OM pools outside of conventional analytical windows. Here, we exploited natural abundance variations in radiocarbon (14C) to trace various fossil fuel-derived HOCs (14C-free) within chemically defined fractions of contemporary OM (modern 14C content) in 13 samples including marine and freshwater sediments and one dust and one soil sample. Samples were sequentially treated by solvent extraction followed by saponification. Radiocarbon analysis of the bulk sample and resulting residues was then performed. Fossil fuel-derived HOCs released by these treatments were quantified from an isotope mass balance approach as well as by gas chromatography-mass spectrometry. For the majority of samples (n = 13), 98-100% of the total HOC pool was solvent extractable. Nonextracted HOCs are only significant (29% of total HOC pool)in one sample containing p,p-2,2-bis(chlorophenyl)-1,1,1-trichloroethane and its metabolites. The infrequency of significant incorporation of HOCs into nonextracted OM residues suggests that most HOCs are mobile and bioavailable in the environment and, as such, have a greater potential to exert adverse effects.

In September 1969, the Florida barge spilled 700,000 L of No. 2 fuel oil into the salt marsh sediments of Wild Harbor, MA. Today a substantial amount, approximately 100 kg, of moderately degraded petroleum remains within the sediment and along eroding creek banks. The ribbed mussels, Geukensia demissa, which inhabit the salt marsh creek bank, are exposed to the spilled oil. Examination of short-term exposure was done with transplantation of G. demissa from a control site, Great Sippewissett marsh, into Wild Harbor. We also examined the effects of long-term exposure with transplantation of mussels from Wild Harbor into Great Sippewissett. Both the short- and long-term exposure transplants exhibited slower growth rates, shorter mean shell lengths, lower condition indices, and decreased filtration rates. The results add new knowledge about long-term consequences of spilled oil, a dimension that should be included when assessing oil-impacted areas and developing management plans designed to restore, rehabilitate, or replace impacted areas.

Commercially available single-walled carbon nanotubes (SWCNTs) contain large percentages of metal and carbonaceous impurities. These fractions influence the SWCNT physical properties and performance, yet their chemical compositions are not well defined. This lack of information also precludes accurate environmental risk assessments for specific SWCNT stocks, which emerging local legislation requires of nanomaterial manufacturers. To address these needs, we measured the elemental, molecular, and stable carbon isotope compositions of commercially available SWCNTs. As expected, catalytic metals occurred at per cent levels (1.3-29%), but purified materials also contained unexpected metals (e.g., Cu, Pb at 0.1-0.3 ppt). Nitrogen contents (up to 0.48%) were typically greater in arc-produced SWCNTs than in those derived from chemical vapor deposition. Toluene-extractable materials contributed less than 5% of the total mass of the SWCNTs. Internal standard losses during dichloromethane extractions suggested that metals are available for reductive dehalogenation reactions, ultimately resulting in the degradation of aromatic internal standards. The carbon isotope content of the extracted material suggested that SWCNTs acquired much of their carbonaceous contamination from their storage environment. Some of the SWCNTs, themselves, were highly depleted in (13)C relative to petroleum-derived chemicals. The distinct carbon isotopic signatures and unique metal 'fingerprints' may be useful as environmental tracers allowing assessment of SWCNT sources to the environment.

Photochemical processes affect the fate of spilled oil in the environment, but the relative contribution and kinetics of these degradation pathways are not fully constrained. To address this problem, we followed the weathering of No. 6 fuel oil by periodically sampling rocks covered with a film of oil from Buzzards Bay, MA after the April 2003 Bouchard 120 oil spill. Two sets of polycyclic aromatic hydrocarbon (PAH) isomers, benzo[a]pyrene (BAP) and benzo[e]pyrene (BEP), and benz[a]anthracene (BAA) and chrysene (CHR), were found to have very different disappearance rates in spite of their close structural similarity (kBAA/kCHR approximately 2.0, kBAP/kBEP approximately 2.2). This well-documented phenomenon is suspected to arise from differing capacity for direct photoreaction in the oil film. To investigate the validity of this assumption, we developed a model to estimate the contribution of direct photolysis to the loss of these PAHs from the oil. Newly determined PAH quantum yields demonstrate that the efficiency of phototransformation in hydrophobic media are 2 orders of magnitude lower (Phi' approximately 10(-5)) than in aqueous systems, and the thickness and light-attenuating properties of the oil film reduce the potential for photoreaction by up to 2 orders of magnitude. Given these limiting factors, direct photolysis cannot account for the complete removal of these PAHs (except BAP). Additional results suggest that singlet oxygen photodegradation pathways are not favored in hydrophobic media, as they are in some mineral-associated and aqueous systems. Our results indicate that photomediated reactions with other compounds in the oil mixture were responsible for PAH photodegradation in the oil film.

Halogenated 1'methyl-1,2'-bipyrroles (MBPs) have been identified worldwide in marine mammals. Here we present the tentative identification of previously undetected MBP congeners in Delpinus delphis blubber using gas chromatography/electron capture negative ion mass spectrometry (GC/ECNI-MS) and comprehensive two-dimensional gas chromatography/time of flight mass spectrometry (GCxGC/TOF-MS). This is the first report of 26 congeners. The presence of numerous partially halogenated congeners suggests that they are either biosynthesized concomitantly with their perhalogenated counterparts or that their dehalogenation products can also bioaccumulate. The newly found compounds fit the geographic trend that has been previously noted. That is, samples from the Atlantic Ocean are dominated by the more brominated congeners while those from the Pacific are dominated by the more chlorinated congeners.

Blends of biodiesel and petrodiesel are being used increasingly worldwide. Due to several factors, inaccurate blending of these two mixtures can occur. To test the accuracy of biodiesel blending, we developed and validated a radiocarbon-based method and then analyzed a variety of retail biodiesel blends. Error propagation analysis demonstrated that this method calculates absolute blend content with +/- 1% accuracy, even when real-world variability in the component biodiesel and petrodiesel sources is taken into account. We independently confirmed this accuracy using known endmembers and prepared mixtures. This is the only published method that directly quantifies the carbon of recent biological origin in biodiesel blends. Consequently, it robustly handles realistic chemical variability in biological source materials and provides unequivocal apportionment of renewable versus nonrenewable carbon in a sample fuel blend. Analysis of retail biodiesel blends acquired in 2006 in the United States revealed that inaccurate blending happens frequently. Only one out of ten retail samples passed the specifications that the United States Department of Defense requires for blends that are 20% biodiesel (v/v; referred to as B20).

Highly cracked and isomerized archaeal lipids and bacterial lipids, structurally changed by thermal stress, are present in solvent extracts of 2,707- to 2,685-million-year-old (Ma) metasedimentary rocks from Timmins, ON, Canada. These lipids appear in conventional gas chromatograms as unresolved complex mixtures and include cyclic and acyclic biphytanes, C36-C39 derivatives of the biphytanes, and C31-C35 extended hopanes. Biphytane and extended hopanes are also found in high-pressure catalytic hydrogenation products released from solvent-extracted sediments, indicating that archaea and bacteria were present in Late Archean sedimentary environments. Postdepositional, hydrothermal gold mineralization and graphite precipitation occurred before metamorphism (approximately 2,665 Ma). Late Archean metamorphism significantly reduced the kerogen's adsorptive capacity and severely restricted sediment porosity, limiting the potential for post-Archean additions of organic matter to the samples. Argillites exposed to hydrothermal gold mineralization have disproportionately high concentrations of extractable archaeal and bacterial lipids relative to what is releasable from their respective high-pressure catalytic hydrogenation product and what is observed for argillites deposited away from these hydrothermal settings. The addition of these lipids to the sediments likely results from a Late Archean subsurface hydrothermal biosphere of archaea and bacteria.

Hydrocarbon mass transfers to the atmosphere and water column drive the early weathering of oil spills and also control the chemical exposures of many coastal wildlife species. However, in the field, mass transfer rates of individual hydrocarbons to air and water are often uncertain. In the Part 1 companion to this paper, we used comprehensive two-dimensional gas chromatography (GC x GC) to identify distinct signatures of evaporation and dissolution encoded in the compositional evolution of weathered oils. In Part 2, we further investigate patterns of mass removal in GC x GC chromatograms using a mass transfer model. The model was tailored to conditions at a contaminated beach on Buzzards Bay, MA, after the 2003 Bouchard 120 oil spill. The model was applied to all resolved hydrocarbon compounds in the C11-C24 boiling range, based on their GC x GC-estimated vapor pressures and aqueous solubilities. With no fitted parameters, the model successfully predicted GC x GC chromatogram patterns of mass removal associated with evaporation, water-washing, and diffusion-limited transport. This enabled a critical field evaluation of the mass transfer model and also allowed mass apportionment estimates of hundreds of individual hydrocarbon compounds to air and water. Ultimately, this method should improve assessments of wildlife exposures to oil spill hydrocarbons.

Historically, the thousands of compounds found in oils constituted an "unresolved complex mixture" that frustrated efforts to analyze oil weathering. Moreover, different weathering processes inflict rich and diverse signatures of compositional change in oil, and conventional methods do not effectively decode this elaborate record. Using comprehensive two-dimensional gas chromatography (GC x GC), we can separate thousands of hydrocarbon components and simultaneously estimate their chemical properties. We investigated 13 weathered field samples collected from the Bouchard 120 heavy fuel oil spill in Buzzards Bay, Massachusetts in 2003. We first mapped hydrocarbon vapor pressures and aqueous solubilities onto the compositional space explored by GC x GC chromatograms of weathered samples. Then we developed methods to quantitatively decouple mass loss patterns associated with evaporation and dissolution. The compositional complexity of oil, traditionally considered an obstacle, was now an advantage. We exploited the large inventory of chemical information encoded in oil to robustly differentiate signatures of mass transfer to air and water. With this new approach, we can evaluate mass transfer models (the Part 2 companion to this paper) and more properly account for evaporation, dissolution, and degradation of oil in the environment.

We investigated the extent and variability of C and Cl isotope fractionation during the reduction of polychlorinated ethanes to evaluate the potential use of Cl isotope analysis for the assessment of contaminant transformation in subsurface environments. Kinetic isotope effects (KIE) for C and Cl for the reductive beta-elimination of 1,1,2,2-tetrachloroethane (1,1,2,2-TeCA), pentachloroethane (PCA), and hexachloroethane by Cr(II) used as model reductant in homogeneous solution were compared to KIEs measured for dehydrochlorination of 1,1,2,2-TeCA and PCA. Since isotopic reactions of polychlorinated compounds are complicated by the simultaneous presence of several Cl isotopologues and intramolecular isotopic competition, we present a procedure for the determination of KIEs for Cl from the initial reactant and final product Cl isotope ratios. Despite different reaction mechanisms, that is reduction via dissociative inner-sphere electron transfer by Cr(H2O)6(2+) and base-catalyzed, concerted elimination, respectively, apparent KIEs for C of both pathways fall within a similar range (1.021-1.031). In contrast, KIEs for Cl are significantly higher for reductive beta-elimination (1.013-1.021) than for dehydrochlorination (1.000-1.006). These results suggest that reductive transformations of polychlorinated contaminants might be identified on the basis of combined C and Cl isotope analysis.

In September 1969, the Florida barge spilled 700,000L of No. 2 fuel oil into the salt marsh sediments of Wild Harbor (Buzzards Bay, MA). Today the aboveground environment appears unaffected, but a substantial amount of moderately degraded petroleum still remains 8-20cm below the surface. The salt marsh fiddler crabs, Uca pugnax, burrow into the sediments at depths of 5-25cm, and are chronically exposed to the spilled oil. Behavioral studies conducted with U. pugnax from Wild Harbor and a control site, Great Sippewissett marsh, found that crabs exposed to the oil avoided burrowing into oiled layers, suffered delayed escape responses, lowered feeding rates, and achieved lower densities. The oil residues are therefore biologically active and affect U. pugnax populations. Our results add new knowledge about long-term consequences of spilled oil, a dimension that should be included when assessing oil-impacted areas and developing management plans designed to restore, rehabilitate, or replace impacted areas.

Biodiesel, a mixture of fatty acid methyl esters (FAMEs) derived from animal fats or vegetable oils, is rapidly moving towards the mainstream as an alternative source of energy. However, the behavior of biodiesel, or blends of biodiesel with fossil diesel, in the marine environment have yet to be fully understood. Hence, we performed a series of initial laboratory experiments and simple calculations to evaluate the microbial and environmental fate of FAMEs. Aerobic seawater microcosms spiked with biodiesel or mixtures of biodiesel and fossil diesel revealed that the FAMEs were degraded at roughly the same rate as n-alkanes, and more rapidly than other hydrocarbon components. The residues extracted from these different microcosms became indistinguishable within weeks. Preliminary results from physical-chemical calculations suggest that FAMEs in biodiesel mixtures will not affect the evaporation rates of spilled petroleum hydrocarbons but may stabilize oil droplets in the water column and thereby facilitate transport.

Comprehensive two-dimensional gas chromatography with flame ionization detection (GC x GC-FID) was used to measure alkene-based drilling fluids in crude oils. Compared to one-dimensional gas chromatography, GC x GC-FID is more robust for detecting alkenes due to the increased resolution afforded by second dimension separations. Using GC x GC-FID to analyze four oil samples from one reservoir contaminated with the same drilling fluid, C(15), C(16), C(17), C(18) and C(20) alkenes were identified. The drilling fluid that contaminated these samples also differed from another commercially obtained fluid, which only contained C(16) and C(18) alkenes. These results should motivate the petroleum industry to consider GC x GC-FID for measuring drilling fluids.

The relevance of both modern and fossil carbon contamination as well as isotope fractionation during preparative gas chromatography for compound-specific radiocarbon analysis (CSRA) was evaluated. Two independent laboratories investigated the influence of modern carbon contamination in the sample cleanup procedure and preparative capillary gas chromatography (pcGC) of a radiocarbon-dead 3,3',4,4',5,5'-hexachlorobiphenyl (PCB 169) reference. The isolated samples were analyzed for their 14C/12C ratio by accelerator mass spectrometry. Sample Delta14C values of -996 +/- 20 and -985 +/- 20 per thousand agreed with a Delta14C of -995 +/- 20 per thousand for the unprocessed PCB 169, suggesting that no significant contamination by nonfossil carbon was introduced during the sample preparation process at either laboratory. A reference compound containing a modern 14C/12C ratio (vanillin) was employed to evaluate process contamination from fossil C. No negative bias due to fossil C was observed (sample Delta14C value of 165 +/- 20 per thousand agreed with Delta14C of 155 +/- 12 per thousand for the unprocessed vanillin). The extent of isotopic fractionation that can be induced during pcGC was evaluated by partially collecting the vanillin model compound of modern 14C/12C abundance. A significant change in the delta13C and delta14C values was observed when only parts of the eluting peak were collected (delta13C values ranged from -15.75 to -49.91 per thousand and delta14C values from -82.4 to +4.71 per thousand). Delta14C values, which are normalized to a delta13C of -25 per thousand, did not deviate significantly (-58.9 to -5.8 per thousand, considering the uncertainty of approximately +/-20 per thousand). This means that normalization of radiocarbon results to a delta13C of -25 per thousand, normally performed to remove effects of environmental isotope fractionation on 14C-based age determinations, also cor-rects sufficiently for putative isotopic fractionation that may occur during pcGC isolation of individual compounds for CSRA.

To provide additional evidence that several halogenated organic compounds (HOCs) found in environmental samples are natural and not industrially produced, we analyzed an archived whale oil sample collected in 1921 from the last voyage of the whaling ship Charles W. Morgan. This sample, which pre-dates large-scale industrial manufacture of HOCs, contained two methoxylated polybrominated diphenyl ethers (MeO-PBDEs), five halogenated methyl bipyrroles (MBPs), one halogenated dimethyl bipyrrole (DMBP), and tentatively one dimethoxylated polybrominated biphenyl (diMeO-PBB). This result indicates, at least in part, a natural source of the latter compounds.

Petroleum hydrocarbons persist in salt marsh sediments in Winsor Cove (Buzzards Bay, Massachusetts) impacted from the 1974 spill of No. 2 fuel oil by the barge Bouchard 65. Intertidal sediment cores were collected from 2001 to 2005 and analyzed for total petroleum hydrocarbons (TPHs). TPHs content was greatest (as high as 8.7 mg g(-1) dry weight) in the surface sediments and decreased with distance landward. Select samples were analyzed for polycyclic aromatic hydrocarbons (PAHs) with values as high as 16.7 microg g(-1) for total naphthalenes and phenanthrenes/anthracenes. These remaining PAHs are mainly C(4)-naphthalenes and C(1)-, C(2)-, and C(3)-phenanthrenes/anthracenes revealing preferential loss of almost all of the naphthalenes and the parent compound phenanthrene. Inspection of the data indicates that biodegradation, water-washing and evaporation were major removal processes for many of the petroleum hydrocarbons in the marsh sediments. In addition, historical data and photographs combined with their recent counterparts indicate that erosion has physically removed these contaminants from this site.