2,550 results on '"Reis-Filho, Jorge S."'
Search Results
152. Genomic Applications in Breast Carcinoma
- Author
-
Pareja, Fresia, primary, De Mattos-Arruda, Leticia, additional, Weigelt, Britta, additional, and Reis-Filho, Jorge S., additional
- Published
- 2018
- Full Text
- View/download PDF
153. Assessment of HMGA2 and PLAG1 rearrangements in breast adenomyoepitheliomas
- Author
-
Pareja, Fresia, Geyer, Felipe C., Brown, David N., Sebastião, Ana P. Martins, Gularte-Mérida, Rodrigo, Li, Anqi, Edelweiss, Marcia, Da Cruz Paula, Arnaud, Selenica, Pier, Wen, Hannah Y., Jungbluth, Achim A., Varga, Zsuzsanna, Palazzo, Juan, Rubin, Brian P., Ellis, Ian O., Brogi, Edi, Rakha, Emad A., Weigelt, Britta, and Reis-Filho, Jorge S.
- Published
- 2019
- Full Text
- View/download PDF
154. Functional and topographic effects on DNA methylation in IDH1/2 mutant cancers
- Author
-
Bledea, Ramona, Vasudevaraja, Varshini, Patel, Seema, Stafford, James, Serrano, Jonathan, Esposito, Gianna, Tredwin, Lilian M., Goodman, Nina, Kloetgen, Andreas, Golfinos, John G., Zagzag, David, Weigelt, Britta, Iafrate, A. John, Sulman, Erik P., Chi, Andrew S., Dogan, Snjezana, Reis-Filho, Jorge S., Chiang, Sarah, Placantonakis, Dimitris, Tsirigos, Aristotelis, and Snuderl, Matija
- Published
- 2019
- Full Text
- View/download PDF
155. Spatial analyses of immune cell infiltration in cancer: current methods and future directions:A report of the International Immuno-Oncology Biomarker Working Group on Breast Cancer
- Author
-
Page, David B., Broeckx, Glenn, Jahangir, Chowdhury Arif, Verbandt, Sara, Gupta, Rajarsi R., Thagaard, Jeppe, Khiroya, Reena, Kos, Zuzana, Abduljabbar, Khalid, Acosta Haab, Gabriela, Acs, Balazs, Akturk, Guray, Almeida, Jonas S., Alvarado-Cabrero, Isabel, Azmoudeh-Ardalan, Farid, Badve, Sunil, Baharun, Nurkhairul Bariyah, Bellolio, Enrique R., Bheemaraju, Vydehi, Blenman, Kim R. M., Fujimoto, Luciana Botinelly Mendonça, Bouchmaa, Najat, Burgues, Octavio, Cheang, Maggie Chon U., Ciompi, Francesco, Cooper, Lee A. D., Coosemans, An, Corredor, Germán, Portela, Flavio Luis Dantas, Deman, Frederik, Demaria, Sandra, Dudgeon, Sarah N., Elghazawy, Mahmoud, Ely, Scott, Fernandez-Martín, Claudio, Fineberg, Susan, Fox, Stephen B., Gallagher, William M., Giltnane, Jennifer M., Gnjatic, Sacha, Gonzalez-Ericsson, Paula I., Grigoriadis, Anita, Halama, Niels, Hanna, Matthew G., Harbhajanka, Aparna, Hardas, Alexandros, Hart, Steven N., Hartman, Johan, Hewitt, Stephen, Hida, Akira I., Horlings, Hugo M., Husain, Zaheed, Hytopoulos, Evangelos, Irshad, Sheeba, Janssen, Emiel A.M., Kahila, Mohamed, Kataoka, Tatsuki R., Kawaguchi, Kosuke, Kharidehal, Durga, Khramtsov, Andrey I., Kiraz, Umay, Kirtani, Pawan, Kodach, Liudmila L., Korski, Konstanty, Kovács, Anikó, Laenkholm, Anne-Vibeke, Lang-Schwarz, Corinna, Larsimont, Denis, Lennerz, Jochen K., Lerousseau, Marvin, Li, Xiaoxian, Ly, Amy, Madabhushi, Anant, Maley, Sai K., Manur Narasimhamurthy, Vidya, Marks, Douglas K., McDonald, Elizabeth S., Mehrotra, Ravi, Michiels, Stefan, Minhas, Fayyaz ul Amir Afsar, Mittal, Shachi, Moore, David A., Mushtaq, Shamim, Nighat, Hussain, Papathomas, Thomas, Penault-Llorca, Frederique, Perera, Rashindrie D., Pinard, Christopher J., Pinto-Cardenas, Juan Carlos, Pruneri, Giancarlo, Pusztai, Lajos, Rahman, Arman, Rajpoot, Nasir Mahmood, Rapoport, Bernardo Leon, Rau, Tilman T., Reis-Filho, Jorge S., Ribeiro, Joana M., Rimm, David, Vincent-Salomon, Anne, Salto-Tellez, Manuel, Saltz, Joel, Sayed, Shahin, Siziopikou, Kalliopi P., Sotiriou, Christos, Stenzinger, Albrecht, Sughayer, Maher A., Sur, Daniel, Symmans, Fraser, Tanaka, Sunao, Taxter, Timothy, Tejpar, Sabine, Teuwen, Jonas, Thompson, E. Aubrey, Tramm, Trine, Tran, William T., van der Laak, Jeroen, van Diest, Paul J., Verghese, Gregory E., Viale, Giuseppe, Vieth, Michael, Wahab, Noorul, Walter, Thomas, Waumans, Yannick, Wen, Hannah Y., Yang, Wentao, Yuan, Yinyin, Adams, Sylvia, Bartlett, John Mark Seaverns, Loibl, Sibylle, Denkert, Carsten, Savas, Peter, Loi, Sherene, Salgado, Roberto, Specht Stovgaard, Elisabeth, Page, David B., Broeckx, Glenn, Jahangir, Chowdhury Arif, Verbandt, Sara, Gupta, Rajarsi R., Thagaard, Jeppe, Khiroya, Reena, Kos, Zuzana, Abduljabbar, Khalid, Acosta Haab, Gabriela, Acs, Balazs, Akturk, Guray, Almeida, Jonas S., Alvarado-Cabrero, Isabel, Azmoudeh-Ardalan, Farid, Badve, Sunil, Baharun, Nurkhairul Bariyah, Bellolio, Enrique R., Bheemaraju, Vydehi, Blenman, Kim R. M., Fujimoto, Luciana Botinelly Mendonça, Bouchmaa, Najat, Burgues, Octavio, Cheang, Maggie Chon U., Ciompi, Francesco, Cooper, Lee A. D., Coosemans, An, Corredor, Germán, Portela, Flavio Luis Dantas, Deman, Frederik, Demaria, Sandra, Dudgeon, Sarah N., Elghazawy, Mahmoud, Ely, Scott, Fernandez-Martín, Claudio, Fineberg, Susan, Fox, Stephen B., Gallagher, William M., Giltnane, Jennifer M., Gnjatic, Sacha, Gonzalez-Ericsson, Paula I., Grigoriadis, Anita, Halama, Niels, Hanna, Matthew G., Harbhajanka, Aparna, Hardas, Alexandros, Hart, Steven N., Hartman, Johan, Hewitt, Stephen, Hida, Akira I., Horlings, Hugo M., Husain, Zaheed, Hytopoulos, Evangelos, Irshad, Sheeba, Janssen, Emiel A.M., Kahila, Mohamed, Kataoka, Tatsuki R., Kawaguchi, Kosuke, Kharidehal, Durga, Khramtsov, Andrey I., Kiraz, Umay, Kirtani, Pawan, Kodach, Liudmila L., Korski, Konstanty, Kovács, Anikó, Laenkholm, Anne-Vibeke, Lang-Schwarz, Corinna, Larsimont, Denis, Lennerz, Jochen K., Lerousseau, Marvin, Li, Xiaoxian, Ly, Amy, Madabhushi, Anant, Maley, Sai K., Manur Narasimhamurthy, Vidya, Marks, Douglas K., McDonald, Elizabeth S., Mehrotra, Ravi, Michiels, Stefan, Minhas, Fayyaz ul Amir Afsar, Mittal, Shachi, Moore, David A., Mushtaq, Shamim, Nighat, Hussain, Papathomas, Thomas, Penault-Llorca, Frederique, Perera, Rashindrie D., Pinard, Christopher J., Pinto-Cardenas, Juan Carlos, Pruneri, Giancarlo, Pusztai, Lajos, Rahman, Arman, Rajpoot, Nasir Mahmood, Rapoport, Bernardo Leon, Rau, Tilman T., Reis-Filho, Jorge S., Ribeiro, Joana M., Rimm, David, Vincent-Salomon, Anne, Salto-Tellez, Manuel, Saltz, Joel, Sayed, Shahin, Siziopikou, Kalliopi P., Sotiriou, Christos, Stenzinger, Albrecht, Sughayer, Maher A., Sur, Daniel, Symmans, Fraser, Tanaka, Sunao, Taxter, Timothy, Tejpar, Sabine, Teuwen, Jonas, Thompson, E. Aubrey, Tramm, Trine, Tran, William T., van der Laak, Jeroen, van Diest, Paul J., Verghese, Gregory E., Viale, Giuseppe, Vieth, Michael, Wahab, Noorul, Walter, Thomas, Waumans, Yannick, Wen, Hannah Y., Yang, Wentao, Yuan, Yinyin, Adams, Sylvia, Bartlett, John Mark Seaverns, Loibl, Sibylle, Denkert, Carsten, Savas, Peter, Loi, Sherene, Salgado, Roberto, and Specht Stovgaard, Elisabeth
- Abstract
Modern histologic imaging platforms coupled with machine learning methods have provided new opportunities to map the spatial distribution of immune cells in the tumor microenvironment. However, there exists no standardized method for describing or analyzing spatial immune cell data, and most reported spatial analyses are rudimentary. In this review, we provide an overview of two approaches for reporting and analyzing spatial data (raster versus vector-based). We then provide a compendium of spatial immune cell metrics that have been reported in the literature, summarizing prognostic associations in the context of a variety of cancers. We conclude by discussing two well-described clinical biomarkers, the breast cancer stromal tumor infiltrating lymphocytes score and the colon cancer Immunoscore, and describe investigative opportunities to improve clinical utility of these spatial biomarkers.
- Published
- 2023
156. Pitfalls in machine learning-based assessment of tumor-infiltrating lymphocytes in breast cancer:A report of the International Immuno-Oncology Biomarker Working Group on Breast Cancer
- Author
-
Thagaard, Jeppe, Broeckx, Glenn, Page, David B, Jahangir, Chowdhury Arif, Verbandt, Sara, Kos, Zuzana, Gupta, Rajarsi, Khiroya, Reena, Abduljabbar, Khalid, Acosta Haab, Gabriela, Acs, Balazs, Akturk, Guray, Almeida, Jonas S, Alvarado-Cabrero, Isabel, Amgad, Mohamed, Azmoudeh-Ardalan, Farid, Badve, Sunil, Baharun, Nurkhairul Bariyah, Balslev, Eva, Bellolio, Enrique R, Bheemaraju, Vydehi, Blenman, Kim Rm, Botinelly Mendonça Fujimoto, Luciana, Bouchmaa, Najat, Burgues, Octavio, Chardas, Alexandros, Chon U Cheang, Maggie, Ciompi, Francesco, Cooper, Lee Ad, Coosemans, An, Corredor, Germán, Dahl, Anders B, Dantas Portela, Flavio Luis, Deman, Frederik, Demaria, Sandra, Doré Hansen, Johan, Dudgeon, Sarah N, Ebstrup, Thomas, Elghazawy, Mahmoud, Fernandez-Martín, Claudio, Fox, Stephen B, Gallagher, William M, Giltnane, Jennifer M, Gnjatic, Sacha, Gonzalez-Ericsson, Paula I, Grigoriadis, Anita, Halama, Niels, Hanna, Matthew G, Harbhajanka, Aparna, Hart, Steven N, Hartman, Johan, Hauberg, Søren, Hewitt, Stephen, Hida, Akira I, Horlings, Hugo M, Husain, Zaheed, Hytopoulos, Evangelos, Irshad, Sheeba, Janssen, Emiel Am, Kahila, Mohamed, Kataoka, Tatsuki R, Kawaguchi, Kosuke, Kharidehal, Durga, Khramtsov, Andrey I, Kiraz, Umay, Kirtani, Pawan, Kodach, Liudmila L, Korski, Konstanty, Kovács, Anikó, Laenkholm, Anne-Vibeke, Lang-Schwarz, Corinna, Larsimont, Denis, Lennerz, Jochen K, Lerousseau, Marvin, Li, Xiaoxian, Ly, Amy, Madabhushi, Anant, Maley, Sai K, Manur Narasimhamurthy, Vidya, Marks, Douglas K, McDonald, Elizabeth S, Mehrotra, Ravi, Michiels, Stefan, Minhas, Fayyaz Ul Amir Afsar, Mittal, Shachi, Moore, David A, Mushtaq, Shamim, Nighat, Hussain, Papathomas, Thomas, Penault-Llorca, Frederique, Perera, Rashindrie D, Pinard, Christopher J, Pinto-Cardenas, Juan Carlos, Pruneri, Giancarlo, Pusztai, Lajos, Rahman, Arman, Rajpoot, Nasir Mahmood, Rapoport, Bernardo Leon, Rau, Tilman T, Reis-Filho, Jorge S, Ribeiro, Joana M, Rimm, David, Roslind, Anne, Vincent-Salomon, Anne, Salto-Tellez, Manuel, Saltz, Joel, Sayed, Shahin, Scott, Ely, Siziopikou, Kalliopi P, Sotiriou, Christos, Stenzinger, Albrecht, Sughayer, Maher A, Sur, Daniel, Fineberg, Susan, Symmans, Fraser, Tanaka, Sunao, Taxter, Timothy, Tejpar, Sabine, Teuwen, Jonas, Thompson, E Aubrey, Tramm, Trine, Tran, William T, van der Laak, Jeroen, van Diest, Paul J, Verghese, Gregory E, Viale, Giuseppe, Vieth, Michael, Wahab, Noorul, Walter, Thomas, Waumans, Yannick, Wen, Hannah Y, Yang, Wentao, Yuan, Yinyin, Zin, Reena Md, Adams, Sylvia, Bartlett, John, Loibl, Sibylle, Denkert, Carsten, Savas, Peter, Loi, Sherene, Salgado, Roberto, Specht Stovgaard, Elisabeth, Thagaard, Jeppe, Broeckx, Glenn, Page, David B, Jahangir, Chowdhury Arif, Verbandt, Sara, Kos, Zuzana, Gupta, Rajarsi, Khiroya, Reena, Abduljabbar, Khalid, Acosta Haab, Gabriela, Acs, Balazs, Akturk, Guray, Almeida, Jonas S, Alvarado-Cabrero, Isabel, Amgad, Mohamed, Azmoudeh-Ardalan, Farid, Badve, Sunil, Baharun, Nurkhairul Bariyah, Balslev, Eva, Bellolio, Enrique R, Bheemaraju, Vydehi, Blenman, Kim Rm, Botinelly Mendonça Fujimoto, Luciana, Bouchmaa, Najat, Burgues, Octavio, Chardas, Alexandros, Chon U Cheang, Maggie, Ciompi, Francesco, Cooper, Lee Ad, Coosemans, An, Corredor, Germán, Dahl, Anders B, Dantas Portela, Flavio Luis, Deman, Frederik, Demaria, Sandra, Doré Hansen, Johan, Dudgeon, Sarah N, Ebstrup, Thomas, Elghazawy, Mahmoud, Fernandez-Martín, Claudio, Fox, Stephen B, Gallagher, William M, Giltnane, Jennifer M, Gnjatic, Sacha, Gonzalez-Ericsson, Paula I, Grigoriadis, Anita, Halama, Niels, Hanna, Matthew G, Harbhajanka, Aparna, Hart, Steven N, Hartman, Johan, Hauberg, Søren, Hewitt, Stephen, Hida, Akira I, Horlings, Hugo M, Husain, Zaheed, Hytopoulos, Evangelos, Irshad, Sheeba, Janssen, Emiel Am, Kahila, Mohamed, Kataoka, Tatsuki R, Kawaguchi, Kosuke, Kharidehal, Durga, Khramtsov, Andrey I, Kiraz, Umay, Kirtani, Pawan, Kodach, Liudmila L, Korski, Konstanty, Kovács, Anikó, Laenkholm, Anne-Vibeke, Lang-Schwarz, Corinna, Larsimont, Denis, Lennerz, Jochen K, Lerousseau, Marvin, Li, Xiaoxian, Ly, Amy, Madabhushi, Anant, Maley, Sai K, Manur Narasimhamurthy, Vidya, Marks, Douglas K, McDonald, Elizabeth S, Mehrotra, Ravi, Michiels, Stefan, Minhas, Fayyaz Ul Amir Afsar, Mittal, Shachi, Moore, David A, Mushtaq, Shamim, Nighat, Hussain, Papathomas, Thomas, Penault-Llorca, Frederique, Perera, Rashindrie D, Pinard, Christopher J, Pinto-Cardenas, Juan Carlos, Pruneri, Giancarlo, Pusztai, Lajos, Rahman, Arman, Rajpoot, Nasir Mahmood, Rapoport, Bernardo Leon, Rau, Tilman T, Reis-Filho, Jorge S, Ribeiro, Joana M, Rimm, David, Roslind, Anne, Vincent-Salomon, Anne, Salto-Tellez, Manuel, Saltz, Joel, Sayed, Shahin, Scott, Ely, Siziopikou, Kalliopi P, Sotiriou, Christos, Stenzinger, Albrecht, Sughayer, Maher A, Sur, Daniel, Fineberg, Susan, Symmans, Fraser, Tanaka, Sunao, Taxter, Timothy, Tejpar, Sabine, Teuwen, Jonas, Thompson, E Aubrey, Tramm, Trine, Tran, William T, van der Laak, Jeroen, van Diest, Paul J, Verghese, Gregory E, Viale, Giuseppe, Vieth, Michael, Wahab, Noorul, Walter, Thomas, Waumans, Yannick, Wen, Hannah Y, Yang, Wentao, Yuan, Yinyin, Zin, Reena Md, Adams, Sylvia, Bartlett, John, Loibl, Sibylle, Denkert, Carsten, Savas, Peter, Loi, Sherene, Salgado, Roberto, and Specht Stovgaard, Elisabeth
- Abstract
The clinical significance of the tumor-immune interaction in breast cancer is now established, and tumor-infiltrating lymphocytes (TILs) have emerged as predictive and prognostic biomarkers for patients with triple-negative (estrogen receptor, progesterone receptor, and HER2-negative) breast cancer and HER2-positive breast cancer. How computational assessments of TILs might complement manual TIL assessment in trial and daily practices is currently debated. Recent efforts to use machine learning (ML) to automatically evaluate TILs have shown promising results. We review state-of-the-art approaches and identify pitfalls and challenges of automated TIL evaluation by studying the root cause of ML discordances in comparison to manual TIL quantification. We categorize our findings into four main topics: (1) technical slide issues, (2) ML and image analysis aspects, (3) data challenges, and (4) validation issues. The main reason for discordant assessments is the inclusion of false-positive areas or cells identified by performance on certain tissue patterns or design choices in the computational implementation. To aid the adoption of ML for TIL assessment, we provide an in-depth discussion of ML and image analysis, including validation issues that need to be considered before reliable computational reporting of TILs can be incorporated into the trial and routine clinical management of patients with triple-negative breast cancer.
- Published
- 2023
157. Pitfalls in machine learning-based assessment of tumor-infiltrating lymphocytes in breast cancer: A report of the International Immuno-Oncology Biomarker Working Group on Breast Cancer
- Author
-
Pathologie, Cancer, Thagaard, Jeppe, Broeckx, Glenn, Page, David B, Jahangir, Chowdhury Arif, Verbandt, Sara, Kos, Zuzana, Gupta, Rajarsi, Khiroya, Reena, Abduljabbar, Khalid, Acosta Haab, Gabriela, Acs, Balazs, Akturk, Guray, Almeida, Jonas S, Alvarado-Cabrero, Isabel, Amgad, Mohamed, Azmoudeh-Ardalan, Farid, Badve, Sunil, Baharun, Nurkhairul Bariyah, Balslev, Eva, Bellolio, Enrique R, Bheemaraju, Vydehi, Blenman, Kim Rm, Botinelly Mendonça Fujimoto, Luciana, Bouchmaa, Najat, Burgues, Octavio, Chardas, Alexandros, Chon U Cheang, Maggie, Ciompi, Francesco, Cooper, Lee Ad, Coosemans, An, Corredor, Germán, Dahl, Anders B, Dantas Portela, Flavio Luis, Deman, Frederik, Demaria, Sandra, Doré Hansen, Johan, Dudgeon, Sarah N, Ebstrup, Thomas, Elghazawy, Mahmoud, Fernandez-Martín, Claudio, Fox, Stephen B, Gallagher, William M, Giltnane, Jennifer M, Gnjatic, Sacha, Gonzalez-Ericsson, Paula I, Grigoriadis, Anita, Halama, Niels, Hanna, Matthew G, Harbhajanka, Aparna, Hart, Steven N, Hartman, Johan, Hauberg, Søren, Hewitt, Stephen, Hida, Akira I, Horlings, Hugo M, Husain, Zaheed, Hytopoulos, Evangelos, Irshad, Sheeba, Janssen, Emiel Am, Kahila, Mohamed, Kataoka, Tatsuki R, Kawaguchi, Kosuke, Kharidehal, Durga, Khramtsov, Andrey I, Kiraz, Umay, Kirtani, Pawan, Kodach, Liudmila L, Korski, Konstanty, Kovács, Anikó, Laenkholm, Anne-Vibeke, Lang-Schwarz, Corinna, Larsimont, Denis, Lennerz, Jochen K, Lerousseau, Marvin, Li, Xiaoxian, Ly, Amy, Madabhushi, Anant, Maley, Sai K, Manur Narasimhamurthy, Vidya, Marks, Douglas K, McDonald, Elizabeth S, Mehrotra, Ravi, Michiels, Stefan, Minhas, Fayyaz Ul Amir Afsar, Mittal, Shachi, Moore, David A, Mushtaq, Shamim, Nighat, Hussain, Papathomas, Thomas, Penault-Llorca, Frederique, Perera, Rashindrie D, Pinard, Christopher J, Pinto-Cardenas, Juan Carlos, Pruneri, Giancarlo, Pusztai, Lajos, Rahman, Arman, Rajpoot, Nasir Mahmood, Rapoport, Bernardo Leon, Rau, Tilman T, Reis-Filho, Jorge S, Ribeiro, Joana M, Rimm, David, Roslind, Anne, Vincent-Salomon, Anne, Salto-Tellez, Manuel, Saltz, Joel, Sayed, Shahin, Scott, Ely, Siziopikou, Kalliopi P, Sotiriou, Christos, Stenzinger, Albrecht, Sughayer, Maher A, Sur, Daniel, Fineberg, Susan, Symmans, Fraser, Tanaka, Sunao, Taxter, Timothy, Tejpar, Sabine, Teuwen, Jonas, Thompson, E Aubrey, Tramm, Trine, Tran, William T, van der Laak, Jeroen, van Diest, Paul J, Verghese, Gregory E, Viale, Giuseppe, Vieth, Michael, Wahab, Noorul, Walter, Thomas, Waumans, Yannick, Wen, Hannah Y, Yang, Wentao, Yuan, Yinyin, Zin, Reena Md, Adams, Sylvia, Bartlett, John, Loibl, Sibylle, Denkert, Carsten, Savas, Peter, Loi, Sherene, Salgado, Roberto, Specht Stovgaard, Elisabeth, Pathologie, Cancer, Thagaard, Jeppe, Broeckx, Glenn, Page, David B, Jahangir, Chowdhury Arif, Verbandt, Sara, Kos, Zuzana, Gupta, Rajarsi, Khiroya, Reena, Abduljabbar, Khalid, Acosta Haab, Gabriela, Acs, Balazs, Akturk, Guray, Almeida, Jonas S, Alvarado-Cabrero, Isabel, Amgad, Mohamed, Azmoudeh-Ardalan, Farid, Badve, Sunil, Baharun, Nurkhairul Bariyah, Balslev, Eva, Bellolio, Enrique R, Bheemaraju, Vydehi, Blenman, Kim Rm, Botinelly Mendonça Fujimoto, Luciana, Bouchmaa, Najat, Burgues, Octavio, Chardas, Alexandros, Chon U Cheang, Maggie, Ciompi, Francesco, Cooper, Lee Ad, Coosemans, An, Corredor, Germán, Dahl, Anders B, Dantas Portela, Flavio Luis, Deman, Frederik, Demaria, Sandra, Doré Hansen, Johan, Dudgeon, Sarah N, Ebstrup, Thomas, Elghazawy, Mahmoud, Fernandez-Martín, Claudio, Fox, Stephen B, Gallagher, William M, Giltnane, Jennifer M, Gnjatic, Sacha, Gonzalez-Ericsson, Paula I, Grigoriadis, Anita, Halama, Niels, Hanna, Matthew G, Harbhajanka, Aparna, Hart, Steven N, Hartman, Johan, Hauberg, Søren, Hewitt, Stephen, Hida, Akira I, Horlings, Hugo M, Husain, Zaheed, Hytopoulos, Evangelos, Irshad, Sheeba, Janssen, Emiel Am, Kahila, Mohamed, Kataoka, Tatsuki R, Kawaguchi, Kosuke, Kharidehal, Durga, Khramtsov, Andrey I, Kiraz, Umay, Kirtani, Pawan, Kodach, Liudmila L, Korski, Konstanty, Kovács, Anikó, Laenkholm, Anne-Vibeke, Lang-Schwarz, Corinna, Larsimont, Denis, Lennerz, Jochen K, Lerousseau, Marvin, Li, Xiaoxian, Ly, Amy, Madabhushi, Anant, Maley, Sai K, Manur Narasimhamurthy, Vidya, Marks, Douglas K, McDonald, Elizabeth S, Mehrotra, Ravi, Michiels, Stefan, Minhas, Fayyaz Ul Amir Afsar, Mittal, Shachi, Moore, David A, Mushtaq, Shamim, Nighat, Hussain, Papathomas, Thomas, Penault-Llorca, Frederique, Perera, Rashindrie D, Pinard, Christopher J, Pinto-Cardenas, Juan Carlos, Pruneri, Giancarlo, Pusztai, Lajos, Rahman, Arman, Rajpoot, Nasir Mahmood, Rapoport, Bernardo Leon, Rau, Tilman T, Reis-Filho, Jorge S, Ribeiro, Joana M, Rimm, David, Roslind, Anne, Vincent-Salomon, Anne, Salto-Tellez, Manuel, Saltz, Joel, Sayed, Shahin, Scott, Ely, Siziopikou, Kalliopi P, Sotiriou, Christos, Stenzinger, Albrecht, Sughayer, Maher A, Sur, Daniel, Fineberg, Susan, Symmans, Fraser, Tanaka, Sunao, Taxter, Timothy, Tejpar, Sabine, Teuwen, Jonas, Thompson, E Aubrey, Tramm, Trine, Tran, William T, van der Laak, Jeroen, van Diest, Paul J, Verghese, Gregory E, Viale, Giuseppe, Vieth, Michael, Wahab, Noorul, Walter, Thomas, Waumans, Yannick, Wen, Hannah Y, Yang, Wentao, Yuan, Yinyin, Zin, Reena Md, Adams, Sylvia, Bartlett, John, Loibl, Sibylle, Denkert, Carsten, Savas, Peter, Loi, Sherene, Salgado, Roberto, and Specht Stovgaard, Elisabeth
- Published
- 2023
158. Spatial analyses of immune cell infiltration in cancer: current methods and future directions. A report of the International Immuno-Oncology Biomarker Working Group on Breast Cancer
- Author
-
Pathologie, Cancer, Page, David B, Broeckx, Glenn, Jahangir, Chowdhury Arif, Verbandt, Sara, Gupta, Rajarsi R, Thagaard, Jeppe, Khiroya, Reena, Kos, Zuzana, Abduljabbar, Khalid, Acosta Haab, Gabriela, Acs, Balazs, Almeida, Jonas S, Alvarado-Cabrero, Isabel, Azmoudeh-Ardalan, Farid, Badve, Sunil, Baharun, Nurkhairul Bariyah, Bellolio, Enrique R, Bheemaraju, Vydehi, Blenman, Kim Rm, Botinelly Mendonça Fujimoto, Luciana, Burgues, Octavio, Cheang, Maggie Chon U, Ciompi, Francesco, Cooper, Lee Ad, Coosemans, An, Corredor, Germán, Dantas Portela, Flavio Luis, Deman, Frederik, Demaria, Sandra, Dudgeon, Sarah N, Elghazawy, Mahmoud, Ely, Scott, Fernandez-Martín, Claudio, Fineberg, Susan, Fox, Stephen B, Gallagher, William M, Giltnane, Jennifer M, Gnjatic, Sacha, Gonzalez-Ericsson, Paula I, Grigoriadis, Anita, Halama, Niels, Hanna, Matthew G, Harbhajanka, Aparna, Hardas, Alexandros, Hart, Steven N, Hartman, Johan, Hewitt, Stephen, Hida, Akira I, Horlings, Hugo M, Husain, Zaheed, Hytopoulos, Evangelos, Irshad, Sheeba, Janssen, Emiel Am, Kahila, Mohamed, Kataoka, Tatsuki R, Kawaguchi, Kosuke, Kharidehal, Durga, Khramtsov, Andrey I, Kiraz, Umay, Kirtani, Pawan, Kodach, Liudmila L, Korski, Konstanty, Kovács, Anikó, Laenkholm, Anne-Vibeke, Lang-Schwarz, Corinna, Larsimont, Denis, Lennerz, Jochen K, Lerousseau, Marvin, Li, Xiaoxian, Ly, Amy, Madabhushi, Anant, Maley, Sai K, Manur Narasimhamurthy, Vidya, Marks, Douglas K, McDonald, Elizabeth S, Mehrotra, Ravi, Michiels, Stefan, Minhas, Fayyaz Ul Amir Afsar, Mittal, Shachi, Moore, David A, Mushtaq, Shamim, Nighat, Hussain, Papathomas, Thomas, Penault-Llorca, Frederique, Perera, Rashindrie D, Pinard, Christopher J, Pinto-Cardenas, Juan Carlos, Pruneri, Giancarlo, Pusztai, Lajos, Rahman, Arman, Rajpoot, Nasir Mahmood, Rapoport, Bernardo Leon, Rau, Tilman T, Reis-Filho, Jorge S, Ribeiro, Joana M, Rimm, David, Salomon, Anne-Vincent, Salto-Tellez, Manuel, Saltz, Joel, Sayed, Shahin, Siziopikou, Kalliopi P, Sotiriou, Christos, Stenzinger, Albrecht, Sughayer, Maher A, Sur, Daniel, Symmans, Fraser, Tanaka, Sunao, Taxter, Timothy, Tejpar, Sabine, Teuwen, Jonas, Thompson, E Aubrey, Tramm, Trine, Tran, William T, van der Laak, Jeroen, van Diest, Paul J, Verghese, Gregory E, Viale, Giuseppe, Vieth, Michael, Wahab, Noorul, Walter, Thomas, Waumans, Yannick, Wen, Hannah Y, Yang, Wentao, Yuan, Yinyin, Adams, Sylvia, Bartlett, John Mark Seaverns, Loibl, Sibylle, Denkert, Carsten, Savas, Peter, Loi, Sherene, Salgado, Roberto, Specht Stovgaard, Elisabeth, Akturk, Guray, Bouchmaa, Najat, Pathologie, Cancer, Page, David B, Broeckx, Glenn, Jahangir, Chowdhury Arif, Verbandt, Sara, Gupta, Rajarsi R, Thagaard, Jeppe, Khiroya, Reena, Kos, Zuzana, Abduljabbar, Khalid, Acosta Haab, Gabriela, Acs, Balazs, Almeida, Jonas S, Alvarado-Cabrero, Isabel, Azmoudeh-Ardalan, Farid, Badve, Sunil, Baharun, Nurkhairul Bariyah, Bellolio, Enrique R, Bheemaraju, Vydehi, Blenman, Kim Rm, Botinelly Mendonça Fujimoto, Luciana, Burgues, Octavio, Cheang, Maggie Chon U, Ciompi, Francesco, Cooper, Lee Ad, Coosemans, An, Corredor, Germán, Dantas Portela, Flavio Luis, Deman, Frederik, Demaria, Sandra, Dudgeon, Sarah N, Elghazawy, Mahmoud, Ely, Scott, Fernandez-Martín, Claudio, Fineberg, Susan, Fox, Stephen B, Gallagher, William M, Giltnane, Jennifer M, Gnjatic, Sacha, Gonzalez-Ericsson, Paula I, Grigoriadis, Anita, Halama, Niels, Hanna, Matthew G, Harbhajanka, Aparna, Hardas, Alexandros, Hart, Steven N, Hartman, Johan, Hewitt, Stephen, Hida, Akira I, Horlings, Hugo M, Husain, Zaheed, Hytopoulos, Evangelos, Irshad, Sheeba, Janssen, Emiel Am, Kahila, Mohamed, Kataoka, Tatsuki R, Kawaguchi, Kosuke, Kharidehal, Durga, Khramtsov, Andrey I, Kiraz, Umay, Kirtani, Pawan, Kodach, Liudmila L, Korski, Konstanty, Kovács, Anikó, Laenkholm, Anne-Vibeke, Lang-Schwarz, Corinna, Larsimont, Denis, Lennerz, Jochen K, Lerousseau, Marvin, Li, Xiaoxian, Ly, Amy, Madabhushi, Anant, Maley, Sai K, Manur Narasimhamurthy, Vidya, Marks, Douglas K, McDonald, Elizabeth S, Mehrotra, Ravi, Michiels, Stefan, Minhas, Fayyaz Ul Amir Afsar, Mittal, Shachi, Moore, David A, Mushtaq, Shamim, Nighat, Hussain, Papathomas, Thomas, Penault-Llorca, Frederique, Perera, Rashindrie D, Pinard, Christopher J, Pinto-Cardenas, Juan Carlos, Pruneri, Giancarlo, Pusztai, Lajos, Rahman, Arman, Rajpoot, Nasir Mahmood, Rapoport, Bernardo Leon, Rau, Tilman T, Reis-Filho, Jorge S, Ribeiro, Joana M, Rimm, David, Salomon, Anne-Vincent, Salto-Tellez, Manuel, Saltz, Joel, Sayed, Shahin, Siziopikou, Kalliopi P, Sotiriou, Christos, Stenzinger, Albrecht, Sughayer, Maher A, Sur, Daniel, Symmans, Fraser, Tanaka, Sunao, Taxter, Timothy, Tejpar, Sabine, Teuwen, Jonas, Thompson, E Aubrey, Tramm, Trine, Tran, William T, van der Laak, Jeroen, van Diest, Paul J, Verghese, Gregory E, Viale, Giuseppe, Vieth, Michael, Wahab, Noorul, Walter, Thomas, Waumans, Yannick, Wen, Hannah Y, Yang, Wentao, Yuan, Yinyin, Adams, Sylvia, Bartlett, John Mark Seaverns, Loibl, Sibylle, Denkert, Carsten, Savas, Peter, Loi, Sherene, Salgado, Roberto, Specht Stovgaard, Elisabeth, Akturk, Guray, and Bouchmaa, Najat
- Published
- 2023
159. Pitfalls in machine learning-based assessment of tumor-infiltrating lymphocytes in breast cancer:a report of the international immuno-oncology biomarker working group
- Author
-
Thagaard, Jeppe, Broeckx, Glenn, Page, David B., Jahangir, Chowdhury Arif, Verbandt, Sara, Kos, Zuzana, Gupta, Rajarsi, Khiroya, Reena, Abduljabbar, Khalid, Acosta Haab, Gabriela, Acs, Balazs, Akturk, Guray, Almeida, Jonas S., Alvarado-Cabrero, Isabel, Amgad, Mohamed, Azmoudeh-Ardalan, Farid, Badve, Sunil, Baharun, Nurkhairul Bariyah, Balslev, Eva, Bellolio, Enrique R., Bheemaraju, Vydehi, Blenman, Kim R.M., Botinelly Mendonça Fujimoto, Luciana, Bouchmaa, Najat, Burgues, Octavio, Chardas, Alexandros, Chon U Cheang, Maggie, Ciompi, Francesco, Cooper, Lee A.D., Coosemans, An, Corredor, Germán, Dahl, Anders B., Dantas Portela, Flavio Luis, Deman, Frederik, Demaria, Sandra, Doré Hansen, Johan, Dudgeon, Sarah N., Ebstrup, Thomas, Elghazawy, Mahmoud, Fernandez-Martín, Claudio, Fox, Stephen B., Gallagher, William M., Giltnane, Jennifer M., Gnjatic, Sacha, Gonzalez-Ericsson, Paula I., Grigoriadis, Anita, Halama, Niels, Hanna, Matthew G., Harbhajanka, Aparna, Hart, Steven N., Hartman, Johan, Hauberg, Søren, Hewitt, Stephen, Hida, Akira I., Horlings, Hugo M., Husain, Zaheed, Hytopoulos, Evangelos, Irshad, Sheeba, Janssen, Emiel A.M., Kahila, Mohamed, Kataoka, Tatsuki R., Kawaguchi, Kosuke, Kharidehal, Durga, Khramtsov, Andrey I., Kiraz, Umay, Kirtani, Pawan, Kodach, Liudmila L., Korski, Konstanty, Kovács, Anikó, Laenkholm, Anne Vibeke, Lang-Schwarz, Corinna, Larsimont, Denis, Lennerz, Jochen K., Lerousseau, Marvin, Li, Xiaoxian, Ly, Amy, Madabhushi, Anant, Maley, Sai K., Manur Narasimhamurthy, Vidya, Marks, Douglas K., McDonald, Elizabeth S., Mehrotra, Ravi, Michiels, Stefan, Minhas, Fayyaz ul Amir Afsar, Mittal, Shachi, Moore, David A., Mushtaq, Shamim, Nighat, Hussain, Papathomas, Thomas, Penault-Llorca, Frederique, Perera, Rashindrie D., Pinard, Christopher J., Pinto-Cardenas, Juan Carlos, Pruneri, Giancarlo, Pusztai, Lajos, Rahman, Arman, Rajpoot, Nasir Mahmood, Rapoport, Bernardo Leon, Rau, Tilman T., Reis-Filho, Jorge S., Ribeiro, Joana M., Rimm, David, Roslind, Anne, Vincent-Salomon, Anne, Salto-Tellez, Manuel, Saltz, Joel, Sayed, Shahin, Scott, Ely, Siziopikou, Kalliopi P., Sotiriou, Christos, Stenzinger, Albrecht, Sughayer, Maher A., Sur, Daniel, Fineberg, Susan, Symmans, Fraser, Tanaka, Sunao, Taxter, Timothy, Tejpar, Sabine, Teuwen, Jonas, Thompson, E. Aubrey, Tramm, Trine, Tran, William T., van der Laak, Jeroen, van Diest, Paul J., Verghese, Gregory E., Viale, Giuseppe, Vieth, Michael, Wahab, Noorul, Walter, Thomas, Waumans, Yannick, Wen, Hannah Y., Yang, Wentao, Yuan, Yinyin, Zin, Reena Md, Adams, Sylvia, Bartlett, John, Loibl, Sibylle, Denkert, Carsten, Savas, Peter, Loi, Sherene, Salgado, Roberto, Specht Stovgaard, Elisabeth, Thagaard, Jeppe, Broeckx, Glenn, Page, David B., Jahangir, Chowdhury Arif, Verbandt, Sara, Kos, Zuzana, Gupta, Rajarsi, Khiroya, Reena, Abduljabbar, Khalid, Acosta Haab, Gabriela, Acs, Balazs, Akturk, Guray, Almeida, Jonas S., Alvarado-Cabrero, Isabel, Amgad, Mohamed, Azmoudeh-Ardalan, Farid, Badve, Sunil, Baharun, Nurkhairul Bariyah, Balslev, Eva, Bellolio, Enrique R., Bheemaraju, Vydehi, Blenman, Kim R.M., Botinelly Mendonça Fujimoto, Luciana, Bouchmaa, Najat, Burgues, Octavio, Chardas, Alexandros, Chon U Cheang, Maggie, Ciompi, Francesco, Cooper, Lee A.D., Coosemans, An, Corredor, Germán, Dahl, Anders B., Dantas Portela, Flavio Luis, Deman, Frederik, Demaria, Sandra, Doré Hansen, Johan, Dudgeon, Sarah N., Ebstrup, Thomas, Elghazawy, Mahmoud, Fernandez-Martín, Claudio, Fox, Stephen B., Gallagher, William M., Giltnane, Jennifer M., Gnjatic, Sacha, Gonzalez-Ericsson, Paula I., Grigoriadis, Anita, Halama, Niels, Hanna, Matthew G., Harbhajanka, Aparna, Hart, Steven N., Hartman, Johan, Hauberg, Søren, Hewitt, Stephen, Hida, Akira I., Horlings, Hugo M., Husain, Zaheed, Hytopoulos, Evangelos, Irshad, Sheeba, Janssen, Emiel A.M., Kahila, Mohamed, Kataoka, Tatsuki R., Kawaguchi, Kosuke, Kharidehal, Durga, Khramtsov, Andrey I., Kiraz, Umay, Kirtani, Pawan, Kodach, Liudmila L., Korski, Konstanty, Kovács, Anikó, Laenkholm, Anne Vibeke, Lang-Schwarz, Corinna, Larsimont, Denis, Lennerz, Jochen K., Lerousseau, Marvin, Li, Xiaoxian, Ly, Amy, Madabhushi, Anant, Maley, Sai K., Manur Narasimhamurthy, Vidya, Marks, Douglas K., McDonald, Elizabeth S., Mehrotra, Ravi, Michiels, Stefan, Minhas, Fayyaz ul Amir Afsar, Mittal, Shachi, Moore, David A., Mushtaq, Shamim, Nighat, Hussain, Papathomas, Thomas, Penault-Llorca, Frederique, Perera, Rashindrie D., Pinard, Christopher J., Pinto-Cardenas, Juan Carlos, Pruneri, Giancarlo, Pusztai, Lajos, Rahman, Arman, Rajpoot, Nasir Mahmood, Rapoport, Bernardo Leon, Rau, Tilman T., Reis-Filho, Jorge S., Ribeiro, Joana M., Rimm, David, Roslind, Anne, Vincent-Salomon, Anne, Salto-Tellez, Manuel, Saltz, Joel, Sayed, Shahin, Scott, Ely, Siziopikou, Kalliopi P., Sotiriou, Christos, Stenzinger, Albrecht, Sughayer, Maher A., Sur, Daniel, Fineberg, Susan, Symmans, Fraser, Tanaka, Sunao, Taxter, Timothy, Tejpar, Sabine, Teuwen, Jonas, Thompson, E. Aubrey, Tramm, Trine, Tran, William T., van der Laak, Jeroen, van Diest, Paul J., Verghese, Gregory E., Viale, Giuseppe, Vieth, Michael, Wahab, Noorul, Walter, Thomas, Waumans, Yannick, Wen, Hannah Y., Yang, Wentao, Yuan, Yinyin, Zin, Reena Md, Adams, Sylvia, Bartlett, John, Loibl, Sibylle, Denkert, Carsten, Savas, Peter, Loi, Sherene, Salgado, Roberto, and Specht Stovgaard, Elisabeth
- Abstract
The clinical significance of the tumor-immune interaction in breast cancer is now established, and tumor-infiltrating lymphocytes (TILs) have emerged as predictive and prognostic biomarkers for patients with triple-negative (estrogen receptor, progesterone receptor, and HER2-negative) breast cancer and HER2-positive breast cancer. How computational assessments of TILs might complement manual TIL assessment in trial and daily practices is currently debated. Recent efforts to use machine learning (ML) to automatically evaluate TILs have shown promising results. We review state-of-the-art approaches and identify pitfalls and challenges of automated TIL evaluation by studying the root cause of ML discordances in comparison to manual TIL quantification. We categorize our findings into four main topics: (1) technical slide issues, (2) ML and image analysis aspects, (3) data challenges, and (4) validation issues. The main reason for discordant assessments is the inclusion of false-positive areas or cells identified by performance on certain tissue patterns or design choices in the computational implementation. To aid the adoption of ML for TIL assessment, we provide an in-depth discussion of ML and image analysis, including validation issues that need to be considered before reliable computational reporting of TILs can be incorporated into the trial and routine clinical management of patients with triple-negative breast cancer.
- Published
- 2023
160. Decreased HER2 expression in endometrial cancer following anti‐HER2 therapy.
- Author
-
Chui, M Herman, Brown, David N, Da Cruz Paula, Arnaud, da Silva, Edaise M, Momeni‐Boroujeni, Amir, Reis‐Filho, Jorge S, Zhang, Yanming, Makker, Vicky, Ellenson, Lora Hedrick, and Weigelt, Britta
- Subjects
ENDOMETRIAL cancer ,HER2 protein ,FLUORESCENCE in situ hybridization ,HER2 gene ,GENE amplification - Abstract
Trastuzumab has demonstrated clinical efficacy in the treatment of HER2‐positive serous endometrial cancer (EC), which led to its incorporation into standard‐of‐care management of this aggressive disease. Acquired resistance remains an important challenge, however, and its underlying mechanisms in EC are unknown. To define the molecular changes that occur in response to anti‐HER2 therapy in EC, targeted next‐generation sequencing (NGS), HER2 immunohistochemistry (IHC), and fluorescence in situ hybridization (FISH) were performed on pre‐ and post‐treatment tumour samples from 14 patients with EC treated with trastuzumab or trastuzumab emtansine. Recurrent tumours after anti‐HER2 therapy acquired additional genetic alterations compared with matched pre‐treatment ECs and frequently showed decreased HER2 protein expression by IHC (7/14, 50%). Complete/near‐complete absence of HER2 protein expression (score 0/1+) observed post‐treatment (4/14, 29%) was associated with retained HER2 gene amplification (n = 3) or copy number neutral status (n = 1). Whole‐exome sequencing performed on primary and recurrent tumours from the latter case, which exhibited genetic heterogeneity of HER2 amplification in the primary tumour, revealed selection of an early HER2‐non‐amplified clone following therapy. Our findings demonstrate that loss of target expression, by selection of HER2‐non‐amplified clones or, more commonly, by downregulation of expression, may constitute a mechanism of resistance to anti‐HER2 therapy in HER2‐positive EC. © 2023 The Pathological Society of Great Britain and Ireland. Published by John Wiley & Sons, Ltd. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
161. KIT genetic alterations in breast cancer.
- Author
-
Vahdatinia, Mahsa, Derakhshan, Fatemeh, Da Cruz Paula, Arnaud, Dopeso, Higinio, Marra, Antonio, Gazzo, Andrea M., Brown, David, Selenica, Pier, Ross, Dara S., Razavi, Pedram, Weigelt, Britta, Wen, Hannah Y., Brogi, Edi, Reis-Filho, Jorge S., Pareja, Fresia, and Hong Zhang
- Subjects
BREAST ,BREAST cancer ,SOMATIC mutation ,EPIDERMAL growth factor receptors ,PROGESTERONE receptors - Published
- 2024
- Full Text
- View/download PDF
162. A Multiparameter Molecular Classifier to Predict Response to Neoadjuvant Lapatinib plus Trastuzumab without Chemotherapy in HER2+ Breast Cancer
- Author
-
Veeraraghavan, Jamunarani, primary, Gutierrez, Carolina, additional, De Angelis, Carmine, additional, Davis, Robert, additional, Wang, Tao, additional, Pascual, Tomas, additional, Selenica, Pier, additional, Sanchez, Katherine, additional, Nitta, Hiroaki, additional, Kapadia, Monesh, additional, Pavlick, Anne C., additional, Galvan, Patricia, additional, Rexer, Brent, additional, Forero-Torres, Andres, additional, Nanda, Rita, additional, Storniolo, Anna M., additional, Krop, Ian E., additional, Goetz, Matthew P., additional, Nangia, Julie R., additional, Wolff, Antonio C., additional, Weigelt, Britta, additional, Reis-Filho, Jorge S., additional, Hilsenbeck, Susan G., additional, Prat, Aleix, additional, Osborne, C. Kent, additional, Schiff, Rachel, additional, and Rimawi, Mothaffar F., additional
- Published
- 2023
- Full Text
- View/download PDF
163. Abstract 2132: Tumor heterogeneity of CCNE1 copy number assessed by fluorescence in situ hybridization (FISH) in ovarian and uterine cancers and correlation with cyclin E protein expression
- Author
-
Petrone, Adam, primary, Aguado-Fraile, Elia, additional, Sethuraman, Sunantha, additional, Johnson, Adrienne, additional, Silverman, Ian, additional, Marshall, Gary, additional, Reis-Filho, Jorge S., additional, Iafrate, John, additional, Veloso, Artur, additional, and Rimkunas, Victoria, additional
- Published
- 2023
- Full Text
- View/download PDF
164. Supplementary Table 3 from Molecular Characterization of Acquired Resistance to KRASG12C–EGFR Inhibition in Colorectal Cancer
- Author
-
Yaeger, Rona, primary, Mezzadra, Riccardo, primary, Sinopoli, Jenna, primary, Bian, Yu, primary, Marasco, Michelangelo, primary, Kaplun, Esther, primary, Gao, Yijun, primary, Zhao, HuiYong, primary, Paula, Arnaud Da Cruz, primary, Zhu, Yingjie, primary, Perez, Almudena Chaves, primary, Chadalavada, Kalyani, primary, Tse, Edison, primary, Chowdhry, Sudhir, primary, Bowker, Sydney, primary, Chang, Qing, primary, Qeriqi, Besnik, primary, Weigelt, Britta, primary, Nanjangud, Gouri J., primary, Berger, Michael F., primary, Der-Torossian, Hirak, primary, Anderes, Kenna, primary, Socci, Nicholas D., primary, Shia, Jinru, primary, Riely, Gregory J., primary, Murciano-Goroff, Yonina R., primary, Li, Bob T., primary, Christensen, James G., primary, Reis-Filho, Jorge S., primary, Solit, David B., primary, de Stanchina, Elisa, primary, Lowe, Scott W., primary, Rosen, Neal, primary, and Misale, Sandra, primary
- Published
- 2023
- Full Text
- View/download PDF
165. Data from Cancer-Causative Mutations Occurring in Early Embryogenesis
- Author
-
Pareja, Fresia, primary, Ptashkin, Ryan N., primary, Brown, David N., primary, Derakhshan, Fatemeh, primary, Selenica, Pier, primary, da Silva, Edaise M., primary, Gazzo, Andrea M., primary, Da Cruz Paula, Arnaud, primary, Breen, Kelsey, primary, Shen, Ronglai, primary, Marra, Antonio, primary, Zehir, Ahmet, primary, Benayed, Ryma, primary, Berger, Michael F., primary, Ceyhan-Birsoy, Ozge, primary, Jairam, Sowmya, primary, Sheehan, Margaret, primary, Patel, Utsav, primary, Kemel, Yelena, primary, Casanova-Murphy, Jacklyn, primary, Schwartz, Christopher J., primary, Vahdatinia, Mahsa, primary, Comen, Elizabeth, primary, Borsu, Laetitia, primary, Pei, Xin, primary, Riaz, Nadeem, primary, Abramson, David H., primary, Weigelt, Britta, primary, Walsh, Michael F., primary, Hadjantonakis, Anna-Katerina, primary, Ladanyi, Marc, primary, Offit, Kenneth, primary, Stadler, Zsofia K., primary, Robson, Mark E., primary, Reis-Filho, Jorge S., primary, and Mandelker, Diana, primary
- Published
- 2023
- Full Text
- View/download PDF
166. Abstract 6063: Genomic characterization of non-small cell lung cancer (NSCLC) brain metastasis (BM) patients identifies novel alterations associated with tropisms and disease progression
- Author
-
Walch, Henry, primary, Skakodub, Anna, additional, Tringale, Kathryn R., additional, Vasudevan, Harish N., additional, Eichholz, Jordan, additional, Kelly, Daniel W., additional, Lebow, Emily, additional, Moss, Nelson S., additional, Yu, Kenny Kwok Hei, additional, Li, Bob T., additional, Mueller, Boris, additional, Khan, Atif, additional, Yu, Yao, additional, Powell, Simon, additional, Reis-Filho, Jorge S., additional, Imber, Brandon S., additional, Razavi, Pedram, additional, Gomez, Daniel R., additional, Schultz, Nikolaus, additional, and Pike, Luke R., additional
- Published
- 2023
- Full Text
- View/download PDF
167. Data from Molecular Characterization of Acquired Resistance to KRASG12C–EGFR Inhibition in Colorectal Cancer
- Author
-
Yaeger, Rona, primary, Mezzadra, Riccardo, primary, Sinopoli, Jenna, primary, Bian, Yu, primary, Marasco, Michelangelo, primary, Kaplun, Esther, primary, Gao, Yijun, primary, Zhao, HuiYong, primary, Paula, Arnaud Da Cruz, primary, Zhu, Yingjie, primary, Perez, Almudena Chaves, primary, Chadalavada, Kalyani, primary, Tse, Edison, primary, Chowdhry, Sudhir, primary, Bowker, Sydney, primary, Chang, Qing, primary, Qeriqi, Besnik, primary, Weigelt, Britta, primary, Nanjangud, Gouri J., primary, Berger, Michael F., primary, Der-Torossian, Hirak, primary, Anderes, Kenna, primary, Socci, Nicholas D., primary, Shia, Jinru, primary, Riely, Gregory J., primary, Murciano-Goroff, Yonina R., primary, Li, Bob T., primary, Christensen, James G., primary, Reis-Filho, Jorge S., primary, Solit, David B., primary, de Stanchina, Elisa, primary, Lowe, Scott W., primary, Rosen, Neal, primary, and Misale, Sandra, primary
- Published
- 2023
- Full Text
- View/download PDF
168. Abstract 5721: Automated annotation for large-scale clinicogenomic models of lung cancer treatment response and overall survival
- Author
-
Jee, Justin, primary, Fong, Chris, additional, Pichotta, Karl, additional, Tran, Thinh, additional, Luthra, Anisha, additional, Altoe, Mirella, additional, Maron, Steven, additional, Shen, Ronglai, additional, Liu, Si-Yang, additional, Waters, Michele, additional, Kholodenko, Joseph, additional, Mastrogiacomo, Brooke, additional, Kim, Susie, additional, Brannon, A Rose, additional, Berger, Michael F., additional, Martin, Axel, additional, Chang, Jason, additional, Safonov, Anton, additional, Reis-Filho, Jorge S., additional, Schrag, Deborah, additional, Shah, Sohrab P., additional, Razavi, Pedram, additional, Li, Bob T., additional, Riely, Gregory J., additional, and Schultz, Nikolaus, additional
- Published
- 2023
- Full Text
- View/download PDF
169. Abstract 6421: Molecular profiles and single cell analysis identify immunogenic pancreatic ductal adenocarcinoma (iPDAC)
- Author
-
Park, Wungki, primary, O'Connor, Catherine, additional, Umeda, Shigeaki, additional, Sharma, Roshan, additional, Zhu, Yingjie, additional, Karnoub, Elias-Ramzey, additional, Varghese, Anna, additional, Soares, Kevin C., additional, Jimemez, Alejandro, additional, Yavas, Asli, additional, Yu, Kenneth H., additional, Vinod, Balachandran P., additional, Chou, Joanne F., additional, Khalil, Danny N., additional, David, Kelsen, additional, Ozkan, Hulya Sahin, additional, Basturk, Olca, additional, Capanu, Marinela, additional, Nawy, Tal, additional, Berger, Michael F., additional, Abou-Alfa, Ghassan K., additional, Reis-Filho, Jorge S., additional, Chaligne, Ronan, additional, Riaz, Nadeem, additional, Pe'er, Dana, additional, Iacobuzio-Donahue, Christine, additional, and O'Reilly, Eileen M., additional
- Published
- 2023
- Full Text
- View/download PDF
170. Supplementary Data from Cancer-Causative Mutations Occurring in Early Embryogenesis
- Author
-
Pareja, Fresia, primary, Ptashkin, Ryan N., primary, Brown, David N., primary, Derakhshan, Fatemeh, primary, Selenica, Pier, primary, da Silva, Edaise M., primary, Gazzo, Andrea M., primary, Da Cruz Paula, Arnaud, primary, Breen, Kelsey, primary, Shen, Ronglai, primary, Marra, Antonio, primary, Zehir, Ahmet, primary, Benayed, Ryma, primary, Berger, Michael F., primary, Ceyhan-Birsoy, Ozge, primary, Jairam, Sowmya, primary, Sheehan, Margaret, primary, Patel, Utsav, primary, Kemel, Yelena, primary, Casanova-Murphy, Jacklyn, primary, Schwartz, Christopher J., primary, Vahdatinia, Mahsa, primary, Comen, Elizabeth, primary, Borsu, Laetitia, primary, Pei, Xin, primary, Riaz, Nadeem, primary, Abramson, David H., primary, Weigelt, Britta, primary, Walsh, Michael F., primary, Hadjantonakis, Anna-Katerina, primary, Ladanyi, Marc, primary, Offit, Kenneth, primary, Stadler, Zsofia K., primary, Robson, Mark E., primary, Reis-Filho, Jorge S., primary, and Mandelker, Diana, primary
- Published
- 2023
- Full Text
- View/download PDF
171. Data from Metastasis and Immune Evasion from Extracellular cGAMP Hydrolysis
- Author
-
Li, Jun, primary, Duran, Mercedes A., primary, Dhanota, Ninjit, primary, Chatila, Walid K., primary, Bettigole, Sarah E., primary, Kwon, John, primary, Sriram, Roshan K., primary, Humphries, Matthew P., primary, Salto-Tellez, Manuel, primary, James, Jacqueline A., primary, Hanna, Matthew G., primary, Melms, Johannes C., primary, Vallabhaneni, Sreeram, primary, Litchfield, Kevin, primary, Usaite, Ieva, primary, Biswas, Dhruva, primary, Bareja, Rohan, primary, Li, Hao Wei, primary, Martin, Maria Laura, primary, Dorsaint, Princesca, primary, Cavallo, Julie-Ann, primary, Li, Peng, primary, Pauli, Chantal, primary, Gottesdiener, Lee, primary, DiPardo, Benjamin J., primary, Hollmann, Travis J., primary, Merghoub, Taha, primary, Wen, Hannah Y., primary, Reis-Filho, Jorge S., primary, Riaz, Nadeem, primary, Su, Shin-San Michael, primary, Kalbasi, Anusha, primary, Vasan, Neil, primary, Powell, Simon N., primary, Wolchok, Jedd D., primary, Elemento, Olivier, primary, Swanton, Charles, primary, Shoushtari, Alexander N., primary, Parkes, Eileen E., primary, Izar, Benjamin, primary, and Bakhoum, Samuel F., primary
- Published
- 2023
- Full Text
- View/download PDF
172. Data from V211D Mutation in MEK1 Causes Resistance to MEK Inhibitors in Colon Cancer
- Author
-
Gao, Yijun, primary, Maria, Ann, primary, Na, Na, primary, da Cruz Paula, Arnaud, primary, Gorelick, Alexander N., primary, Hechtman, Jaclyn F., primary, Carson, Julianne, primary, Lefkowitz, Robert A., primary, Weigelt, Britta, primary, Taylor, Barry S., primary, Zhao, HuiYong, primary, Reis-Filho, Jorge S., primary, de Stanchina, Elisa, primary, Rosen, Neal, primary, Yao, Zhan, primary, and Yaeger, Rona, primary
- Published
- 2023
- Full Text
- View/download PDF
173. Data from HER2-Mediated Internalization of Cytotoxic Agents in ERBB2 Amplified or Mutant Lung Cancers
- Author
-
Li, Bob T., primary, Michelini, Flavia, primary, Misale, Sandra, primary, Cocco, Emiliano, primary, Baldino, Laura, primary, Cai, Yanyan, primary, Shifman, Sophie, primary, Tu, Hai-Yan, primary, Myers, Mackenzie L., primary, Xu, Chongrui, primary, Mattar, Marissa, primary, Khodos, Inna, primary, Little, Megan, primary, Qeriqi, Besnik, primary, Weitsman, Gregory, primary, Wilhem, Clare J., primary, Lalani, Alshad S., primary, Diala, Irmina, primary, Freedman, Rachel A., primary, Lin, Nancy U., primary, Solit, David B., primary, Berger, Michael F., primary, Barber, Paul R., primary, Ng, Tony, primary, Offin, Michael, primary, Isbell, James M., primary, Jones, David R., primary, Yu, Helena A., primary, Thyparambil, Sheeno, primary, Liao, Wei-Li, primary, Bhalkikar, Anuja, primary, Cecchi, Fabiola, primary, Hyman, David M., primary, Lewis, Jason S., primary, Buonocore, Darren J., primary, Ho, Alan L., primary, Makker, Vicky, primary, Reis-Filho, Jorge S., primary, Razavi, Pedram, primary, Arcila, Maria E., primary, Kris, Mark G., primary, Poirier, John T., primary, Shen, Ronglai, primary, Tsurutani, Junji, primary, Ulaner, Gary A., primary, de Stanchina, Elisa, primary, Rosen, Neal, primary, Rudin, Charles M., primary, and Scaltriti, Maurizio, primary
- Published
- 2023
- Full Text
- View/download PDF
174. Data from AKT1 E17K Inhibits Cancer Cell Migration by Abrogating β-Catenin Signaling
- Author
-
Gao, Sizhi Paul, primary, Kiliti, Amber J., primary, Zhang, Kai, primary, Vasani, Naresh, primary, Mao, Ninghui, primary, Jordan, Emmet, primary, Wise, Hannah C., primary, Shrestha Bhattarai, Tripti, primary, Hu, Wenhuo, primary, Dorso, Madeline, primary, Rodrigues, James A., primary, Kim, Kwanghee, primary, Hanrahan, Aphrothiti J., primary, Razavi, Pedram, primary, Carver, Brett, primary, Chandarlapaty, Sarat, primary, Reis-Filho, Jorge S., primary, Taylor, Barry S., primary, and Solit, David B., primary
- Published
- 2023
- Full Text
- View/download PDF
175. Supplementary Data from INK4 Tumor Suppressor Proteins Mediate Resistance to CDK4/6 Kinase Inhibitors
- Author
-
Li, Qing, primary, Jiang, Baishan, primary, Guo, Jiaye, primary, Shao, Hong, primary, Del Priore, Isabella S., primary, Chang, Qing, primary, Kudo, Rei, primary, Li, Zhiqiang, primary, Razavi, Pedram, primary, Liu, Bo, primary, Boghossian, Andrew S., primary, Rees, Matthew G., primary, Ronan, Melissa M., primary, Roth, Jennifer A., primary, Donovan, Katherine A., primary, Palafox, Marta, primary, Reis-Filho, Jorge S., primary, de Stanchina, Elisa, primary, Fischer, Eric S., primary, Rosen, Neal, primary, Serra, Violeta, primary, Koff, Andrew, primary, Chodera, John D., primary, Gray, Nathanael S., primary, and Chandarlapaty, Sarat, primary
- Published
- 2023
- Full Text
- View/download PDF
176. Supplementary Table 1 from HER2-Mediated Internalization of Cytotoxic Agents in ERBB2 Amplified or Mutant Lung Cancers
- Author
-
Li, Bob T., primary, Michelini, Flavia, primary, Misale, Sandra, primary, Cocco, Emiliano, primary, Baldino, Laura, primary, Cai, Yanyan, primary, Shifman, Sophie, primary, Tu, Hai-Yan, primary, Myers, Mackenzie L., primary, Xu, Chongrui, primary, Mattar, Marissa, primary, Khodos, Inna, primary, Little, Megan, primary, Qeriqi, Besnik, primary, Weitsman, Gregory, primary, Wilhem, Clare J., primary, Lalani, Alshad S., primary, Diala, Irmina, primary, Freedman, Rachel A., primary, Lin, Nancy U., primary, Solit, David B., primary, Berger, Michael F., primary, Barber, Paul R., primary, Ng, Tony, primary, Offin, Michael, primary, Isbell, James M., primary, Jones, David R., primary, Yu, Helena A., primary, Thyparambil, Sheeno, primary, Liao, Wei-Li, primary, Bhalkikar, Anuja, primary, Cecchi, Fabiola, primary, Hyman, David M., primary, Lewis, Jason S., primary, Buonocore, Darren J., primary, Ho, Alan L., primary, Makker, Vicky, primary, Reis-Filho, Jorge S., primary, Razavi, Pedram, primary, Arcila, Maria E., primary, Kris, Mark G., primary, Poirier, John T., primary, Shen, Ronglai, primary, Tsurutani, Junji, primary, Ulaner, Gary A., primary, de Stanchina, Elisa, primary, Rosen, Neal, primary, Rudin, Charles M., primary, and Scaltriti, Maurizio, primary
- Published
- 2023
- Full Text
- View/download PDF
177. Press Conference from Functional Viability Profiles of Breast Cancer
- Author
-
Brough, Rachel, primary, Frankum, Jessica R., primary, Sims, David, primary, Mackay, Alan, primary, Mendes-Pereira, Ana M., primary, Bajrami, Ilirjana, primary, Costa-Cabral, Sara, primary, Rafiq, Rumana, primary, Ahmad, Amar S., primary, Cerone, Maria Antonietta, primary, Natrajan, Rachael, primary, Sharpe, Rachel, primary, Shiu, Kai-Keen, primary, Wetterskog, Daniel, primary, Dedes, Konstantine J., primary, Lambros, Maryou B., primary, Rawjee, Teeara, primary, Linardopoulos, Spiros, primary, Reis-Filho, Jorge S., primary, Turner, Nicholas C., primary, Lord, Christopher J., primary, and Ashworth, Alan, primary
- Published
- 2023
- Full Text
- View/download PDF
178. Supplementary Data PDF from Metastasis and Immune Evasion from Extracellular cGAMP Hydrolysis
- Author
-
Li, Jun, primary, Duran, Mercedes A., primary, Dhanota, Ninjit, primary, Chatila, Walid K., primary, Bettigole, Sarah E., primary, Kwon, John, primary, Sriram, Roshan K., primary, Humphries, Matthew P., primary, Salto-Tellez, Manuel, primary, James, Jacqueline A., primary, Hanna, Matthew G., primary, Melms, Johannes C., primary, Vallabhaneni, Sreeram, primary, Litchfield, Kevin, primary, Usaite, Ieva, primary, Biswas, Dhruva, primary, Bareja, Rohan, primary, Li, Hao Wei, primary, Martin, Maria Laura, primary, Dorsaint, Princesca, primary, Cavallo, Julie-Ann, primary, Li, Peng, primary, Pauli, Chantal, primary, Gottesdiener, Lee, primary, DiPardo, Benjamin J., primary, Hollmann, Travis J., primary, Merghoub, Taha, primary, Wen, Hannah Y., primary, Reis-Filho, Jorge S., primary, Riaz, Nadeem, primary, Su, Shin-San Michael, primary, Kalbasi, Anusha, primary, Vasan, Neil, primary, Powell, Simon N., primary, Wolchok, Jedd D., primary, Elemento, Olivier, primary, Swanton, Charles, primary, Shoushtari, Alexander N., primary, Parkes, Eileen E., primary, Izar, Benjamin, primary, and Bakhoum, Samuel F., primary
- Published
- 2023
- Full Text
- View/download PDF
179. Supplementary Figures 1-12, Supplementary Tables 1-3 from AKT1 E17K Inhibits Cancer Cell Migration by Abrogating β-Catenin Signaling
- Author
-
Gao, Sizhi Paul, primary, Kiliti, Amber J., primary, Zhang, Kai, primary, Vasani, Naresh, primary, Mao, Ninghui, primary, Jordan, Emmet, primary, Wise, Hannah C., primary, Shrestha Bhattarai, Tripti, primary, Hu, Wenhuo, primary, Dorso, Madeline, primary, Rodrigues, James A., primary, Kim, Kwanghee, primary, Hanrahan, Aphrothiti J., primary, Razavi, Pedram, primary, Carver, Brett, primary, Chandarlapaty, Sarat, primary, Reis-Filho, Jorge S., primary, Taylor, Barry S., primary, and Solit, David B., primary
- Published
- 2023
- Full Text
- View/download PDF
180. Supplementary file - liver genes from Genomic and Transcriptomic Analyses of Breast Cancer Primaries and Matched Metastases in AURORA, the Breast International Group (BIG) Molecular Screening Initiative
- Author
-
Aftimos, Philippe, primary, Oliveira, Mafalda, primary, Irrthum, Alexandre, primary, Fumagalli, Debora, primary, Sotiriou, Christos, primary, Gal-Yam, Einav Nili, primary, Robson, Mark E., primary, Ndozeng, Justin, primary, Di Leo, Angelo, primary, Ciruelos, Eva M., primary, de Azambuja, Evandro, primary, Viale, Giuseppe, primary, Scheepers, Elsemieke D., primary, Curigliano, Giuseppe, primary, Bliss, Judith M., primary, Reis-Filho, Jorge S., primary, Colleoni, Marco, primary, Balic, Marija, primary, Cardoso, Fatima, primary, Albanell, Joan, primary, Duhem, Caroline, primary, Marreaud, Sandrine, primary, Romagnoli, Dario, primary, Rojas, Beatriz, primary, Gombos, Andrea, primary, Wildiers, Hans, primary, Guerrero-Zotano, Angel, primary, Hall, Peter, primary, Bonetti, Andrea, primary, Larsson, Karolina Fs, primary, Degiorgis, Martina, primary, Khodaverdi, Silvia, primary, Greil, Richard, primary, Sverrisdóttir, Ásgerdur, primary, Paoli, Marta, primary, Seyll, Ethel, primary, Loibl, Sibylle, primary, Linderholm, Barbro, primary, Zoppoli, Gabriele, primary, Davidson, Nancy E., primary, Johannsson, Oskar Th, primary, Bedard, Philippe L., primary, Loi, Sherene, primary, Knox, Susan, primary, Cameron, David A., primary, Harbeck, Nadia, primary, Montoya, Maite Lasa, primary, Brandão, Mariana, primary, Vingiani, Andrea, primary, Caballero, Carmela, primary, Hilbers, Florentine S., primary, Yates, Lucy R., primary, Benelli, Matteo, primary, Venet, David, primary, and Piccart, Martine J., primary
- Published
- 2023
- Full Text
- View/download PDF
181. Data from Functional Viability Profiles of Breast Cancer
- Author
-
Brough, Rachel, primary, Frankum, Jessica R., primary, Sims, David, primary, Mackay, Alan, primary, Mendes-Pereira, Ana M., primary, Bajrami, Ilirjana, primary, Costa-Cabral, Sara, primary, Rafiq, Rumana, primary, Ahmad, Amar S., primary, Cerone, Maria Antonietta, primary, Natrajan, Rachael, primary, Sharpe, Rachel, primary, Shiu, Kai-Keen, primary, Wetterskog, Daniel, primary, Dedes, Konstantine J., primary, Lambros, Maryou B., primary, Rawjee, Teeara, primary, Linardopoulos, Spiros, primary, Reis-Filho, Jorge S., primary, Turner, Nicholas C., primary, Lord, Christopher J., primary, and Ashworth, Alan, primary
- Published
- 2023
- Full Text
- View/download PDF
182. Supplementary Data from V211D Mutation in MEK1 Causes Resistance to MEK Inhibitors in Colon Cancer
- Author
-
Gao, Yijun, primary, Maria, Ann, primary, Na, Na, primary, da Cruz Paula, Arnaud, primary, Gorelick, Alexander N., primary, Hechtman, Jaclyn F., primary, Carson, Julianne, primary, Lefkowitz, Robert A., primary, Weigelt, Britta, primary, Taylor, Barry S., primary, Zhao, HuiYong, primary, Reis-Filho, Jorge S., primary, de Stanchina, Elisa, primary, Rosen, Neal, primary, Yao, Zhan, primary, and Yaeger, Rona, primary
- Published
- 2023
- Full Text
- View/download PDF
183. Supplementary Fig 3 from HER2-Mediated Internalization of Cytotoxic Agents in ERBB2 Amplified or Mutant Lung Cancers
- Author
-
Li, Bob T., primary, Michelini, Flavia, primary, Misale, Sandra, primary, Cocco, Emiliano, primary, Baldino, Laura, primary, Cai, Yanyan, primary, Shifman, Sophie, primary, Tu, Hai-Yan, primary, Myers, Mackenzie L., primary, Xu, Chongrui, primary, Mattar, Marissa, primary, Khodos, Inna, primary, Little, Megan, primary, Qeriqi, Besnik, primary, Weitsman, Gregory, primary, Wilhem, Clare J., primary, Lalani, Alshad S., primary, Diala, Irmina, primary, Freedman, Rachel A., primary, Lin, Nancy U., primary, Solit, David B., primary, Berger, Michael F., primary, Barber, Paul R., primary, Ng, Tony, primary, Offin, Michael, primary, Isbell, James M., primary, Jones, David R., primary, Yu, Helena A., primary, Thyparambil, Sheeno, primary, Liao, Wei-Li, primary, Bhalkikar, Anuja, primary, Cecchi, Fabiola, primary, Hyman, David M., primary, Lewis, Jason S., primary, Buonocore, Darren J., primary, Ho, Alan L., primary, Makker, Vicky, primary, Reis-Filho, Jorge S., primary, Razavi, Pedram, primary, Arcila, Maria E., primary, Kris, Mark G., primary, Poirier, John T., primary, Shen, Ronglai, primary, Tsurutani, Junji, primary, Ulaner, Gary A., primary, de Stanchina, Elisa, primary, Rosen, Neal, primary, Rudin, Charles M., primary, and Scaltriti, Maurizio, primary
- Published
- 2023
- Full Text
- View/download PDF
184. Supplementary Fig 1 from HER2-Mediated Internalization of Cytotoxic Agents in ERBB2 Amplified or Mutant Lung Cancers
- Author
-
Li, Bob T., primary, Michelini, Flavia, primary, Misale, Sandra, primary, Cocco, Emiliano, primary, Baldino, Laura, primary, Cai, Yanyan, primary, Shifman, Sophie, primary, Tu, Hai-Yan, primary, Myers, Mackenzie L., primary, Xu, Chongrui, primary, Mattar, Marissa, primary, Khodos, Inna, primary, Little, Megan, primary, Qeriqi, Besnik, primary, Weitsman, Gregory, primary, Wilhem, Clare J., primary, Lalani, Alshad S., primary, Diala, Irmina, primary, Freedman, Rachel A., primary, Lin, Nancy U., primary, Solit, David B., primary, Berger, Michael F., primary, Barber, Paul R., primary, Ng, Tony, primary, Offin, Michael, primary, Isbell, James M., primary, Jones, David R., primary, Yu, Helena A., primary, Thyparambil, Sheeno, primary, Liao, Wei-Li, primary, Bhalkikar, Anuja, primary, Cecchi, Fabiola, primary, Hyman, David M., primary, Lewis, Jason S., primary, Buonocore, Darren J., primary, Ho, Alan L., primary, Makker, Vicky, primary, Reis-Filho, Jorge S., primary, Razavi, Pedram, primary, Arcila, Maria E., primary, Kris, Mark G., primary, Poirier, John T., primary, Shen, Ronglai, primary, Tsurutani, Junji, primary, Ulaner, Gary A., primary, de Stanchina, Elisa, primary, Rosen, Neal, primary, Rudin, Charles M., primary, and Scaltriti, Maurizio, primary
- Published
- 2023
- Full Text
- View/download PDF
185. Supplementary Fig 4 from HER2-Mediated Internalization of Cytotoxic Agents in ERBB2 Amplified or Mutant Lung Cancers
- Author
-
Li, Bob T., primary, Michelini, Flavia, primary, Misale, Sandra, primary, Cocco, Emiliano, primary, Baldino, Laura, primary, Cai, Yanyan, primary, Shifman, Sophie, primary, Tu, Hai-Yan, primary, Myers, Mackenzie L., primary, Xu, Chongrui, primary, Mattar, Marissa, primary, Khodos, Inna, primary, Little, Megan, primary, Qeriqi, Besnik, primary, Weitsman, Gregory, primary, Wilhem, Clare J., primary, Lalani, Alshad S., primary, Diala, Irmina, primary, Freedman, Rachel A., primary, Lin, Nancy U., primary, Solit, David B., primary, Berger, Michael F., primary, Barber, Paul R., primary, Ng, Tony, primary, Offin, Michael, primary, Isbell, James M., primary, Jones, David R., primary, Yu, Helena A., primary, Thyparambil, Sheeno, primary, Liao, Wei-Li, primary, Bhalkikar, Anuja, primary, Cecchi, Fabiola, primary, Hyman, David M., primary, Lewis, Jason S., primary, Buonocore, Darren J., primary, Ho, Alan L., primary, Makker, Vicky, primary, Reis-Filho, Jorge S., primary, Razavi, Pedram, primary, Arcila, Maria E., primary, Kris, Mark G., primary, Poirier, John T., primary, Shen, Ronglai, primary, Tsurutani, Junji, primary, Ulaner, Gary A., primary, de Stanchina, Elisa, primary, Rosen, Neal, primary, Rudin, Charles M., primary, and Scaltriti, Maurizio, primary
- Published
- 2023
- Full Text
- View/download PDF
186. Data from Genomic and Transcriptomic Analyses of Breast Cancer Primaries and Matched Metastases in AURORA, the Breast International Group (BIG) Molecular Screening Initiative
- Author
-
Aftimos, Philippe, primary, Oliveira, Mafalda, primary, Irrthum, Alexandre, primary, Fumagalli, Debora, primary, Sotiriou, Christos, primary, Gal-Yam, Einav Nili, primary, Robson, Mark E., primary, Ndozeng, Justin, primary, Di Leo, Angelo, primary, Ciruelos, Eva M., primary, de Azambuja, Evandro, primary, Viale, Giuseppe, primary, Scheepers, Elsemieke D., primary, Curigliano, Giuseppe, primary, Bliss, Judith M., primary, Reis-Filho, Jorge S., primary, Colleoni, Marco, primary, Balic, Marija, primary, Cardoso, Fatima, primary, Albanell, Joan, primary, Duhem, Caroline, primary, Marreaud, Sandrine, primary, Romagnoli, Dario, primary, Rojas, Beatriz, primary, Gombos, Andrea, primary, Wildiers, Hans, primary, Guerrero-Zotano, Angel, primary, Hall, Peter, primary, Bonetti, Andrea, primary, Larsson, Karolina Fs, primary, Degiorgis, Martina, primary, Khodaverdi, Silvia, primary, Greil, Richard, primary, Sverrisdóttir, Ásgerdur, primary, Paoli, Marta, primary, Seyll, Ethel, primary, Loibl, Sibylle, primary, Linderholm, Barbro, primary, Zoppoli, Gabriele, primary, Davidson, Nancy E., primary, Johannsson, Oskar Th, primary, Bedard, Philippe L., primary, Loi, Sherene, primary, Knox, Susan, primary, Cameron, David A., primary, Harbeck, Nadia, primary, Montoya, Maite Lasa, primary, Brandão, Mariana, primary, Vingiani, Andrea, primary, Caballero, Carmela, primary, Hilbers, Florentine S., primary, Yates, Lucy R., primary, Benelli, Matteo, primary, Venet, David, primary, and Piccart, Martine J., primary
- Published
- 2023
- Full Text
- View/download PDF
187. Supplementary Figure from INK4 Tumor Suppressor Proteins Mediate Resistance to CDK4/6 Kinase Inhibitors
- Author
-
Li, Qing, primary, Jiang, Baishan, primary, Guo, Jiaye, primary, Shao, Hong, primary, Del Priore, Isabella S., primary, Chang, Qing, primary, Kudo, Rei, primary, Li, Zhiqiang, primary, Razavi, Pedram, primary, Liu, Bo, primary, Boghossian, Andrew S., primary, Rees, Matthew G., primary, Ronan, Melissa M., primary, Roth, Jennifer A., primary, Donovan, Katherine A., primary, Palafox, Marta, primary, Reis-Filho, Jorge S., primary, de Stanchina, Elisa, primary, Fischer, Eric S., primary, Rosen, Neal, primary, Serra, Violeta, primary, Koff, Andrew, primary, Chodera, John D., primary, Gray, Nathanael S., primary, and Chandarlapaty, Sarat, primary
- Published
- 2023
- Full Text
- View/download PDF
188. Supplementary Fig 6 from HER2-Mediated Internalization of Cytotoxic Agents in ERBB2 Amplified or Mutant Lung Cancers
- Author
-
Li, Bob T., primary, Michelini, Flavia, primary, Misale, Sandra, primary, Cocco, Emiliano, primary, Baldino, Laura, primary, Cai, Yanyan, primary, Shifman, Sophie, primary, Tu, Hai-Yan, primary, Myers, Mackenzie L., primary, Xu, Chongrui, primary, Mattar, Marissa, primary, Khodos, Inna, primary, Little, Megan, primary, Qeriqi, Besnik, primary, Weitsman, Gregory, primary, Wilhem, Clare J., primary, Lalani, Alshad S., primary, Diala, Irmina, primary, Freedman, Rachel A., primary, Lin, Nancy U., primary, Solit, David B., primary, Berger, Michael F., primary, Barber, Paul R., primary, Ng, Tony, primary, Offin, Michael, primary, Isbell, James M., primary, Jones, David R., primary, Yu, Helena A., primary, Thyparambil, Sheeno, primary, Liao, Wei-Li, primary, Bhalkikar, Anuja, primary, Cecchi, Fabiola, primary, Hyman, David M., primary, Lewis, Jason S., primary, Buonocore, Darren J., primary, Ho, Alan L., primary, Makker, Vicky, primary, Reis-Filho, Jorge S., primary, Razavi, Pedram, primary, Arcila, Maria E., primary, Kris, Mark G., primary, Poirier, John T., primary, Shen, Ronglai, primary, Tsurutani, Junji, primary, Ulaner, Gary A., primary, de Stanchina, Elisa, primary, Rosen, Neal, primary, Rudin, Charles M., primary, and Scaltriti, Maurizio, primary
- Published
- 2023
- Full Text
- View/download PDF
189. Supplementary Figures 1-8, Tables 1-9 from Functional Viability Profiles of Breast Cancer
- Author
-
Brough, Rachel, primary, Frankum, Jessica R., primary, Sims, David, primary, Mackay, Alan, primary, Mendes-Pereira, Ana M., primary, Bajrami, Ilirjana, primary, Costa-Cabral, Sara, primary, Rafiq, Rumana, primary, Ahmad, Amar S., primary, Cerone, Maria Antonietta, primary, Natrajan, Rachael, primary, Sharpe, Rachel, primary, Shiu, Kai-Keen, primary, Wetterskog, Daniel, primary, Dedes, Konstantine J., primary, Lambros, Maryou B., primary, Rawjee, Teeara, primary, Linardopoulos, Spiros, primary, Reis-Filho, Jorge S., primary, Turner, Nicholas C., primary, Lord, Christopher J., primary, and Ashworth, Alan, primary
- Published
- 2023
- Full Text
- View/download PDF
190. Supplementary methods, tables and figures. from Genomic and Transcriptomic Analyses of Breast Cancer Primaries and Matched Metastases in AURORA, the Breast International Group (BIG) Molecular Screening Initiative
- Author
-
Aftimos, Philippe, primary, Oliveira, Mafalda, primary, Irrthum, Alexandre, primary, Fumagalli, Debora, primary, Sotiriou, Christos, primary, Gal-Yam, Einav Nili, primary, Robson, Mark E., primary, Ndozeng, Justin, primary, Di Leo, Angelo, primary, Ciruelos, Eva M., primary, de Azambuja, Evandro, primary, Viale, Giuseppe, primary, Scheepers, Elsemieke D., primary, Curigliano, Giuseppe, primary, Bliss, Judith M., primary, Reis-Filho, Jorge S., primary, Colleoni, Marco, primary, Balic, Marija, primary, Cardoso, Fatima, primary, Albanell, Joan, primary, Duhem, Caroline, primary, Marreaud, Sandrine, primary, Romagnoli, Dario, primary, Rojas, Beatriz, primary, Gombos, Andrea, primary, Wildiers, Hans, primary, Guerrero-Zotano, Angel, primary, Hall, Peter, primary, Bonetti, Andrea, primary, Larsson, Karolina Fs, primary, Degiorgis, Martina, primary, Khodaverdi, Silvia, primary, Greil, Richard, primary, Sverrisdóttir, Ásgerdur, primary, Paoli, Marta, primary, Seyll, Ethel, primary, Loibl, Sibylle, primary, Linderholm, Barbro, primary, Zoppoli, Gabriele, primary, Davidson, Nancy E., primary, Johannsson, Oskar Th, primary, Bedard, Philippe L., primary, Loi, Sherene, primary, Knox, Susan, primary, Cameron, David A., primary, Harbeck, Nadia, primary, Montoya, Maite Lasa, primary, Brandão, Mariana, primary, Vingiani, Andrea, primary, Caballero, Carmela, primary, Hilbers, Florentine S., primary, Yates, Lucy R., primary, Benelli, Matteo, primary, Venet, David, primary, and Piccart, Martine J., primary
- Published
- 2023
- Full Text
- View/download PDF
191. Supplementary Fig 5 from HER2-Mediated Internalization of Cytotoxic Agents in ERBB2 Amplified or Mutant Lung Cancers
- Author
-
Li, Bob T., primary, Michelini, Flavia, primary, Misale, Sandra, primary, Cocco, Emiliano, primary, Baldino, Laura, primary, Cai, Yanyan, primary, Shifman, Sophie, primary, Tu, Hai-Yan, primary, Myers, Mackenzie L., primary, Xu, Chongrui, primary, Mattar, Marissa, primary, Khodos, Inna, primary, Little, Megan, primary, Qeriqi, Besnik, primary, Weitsman, Gregory, primary, Wilhem, Clare J., primary, Lalani, Alshad S., primary, Diala, Irmina, primary, Freedman, Rachel A., primary, Lin, Nancy U., primary, Solit, David B., primary, Berger, Michael F., primary, Barber, Paul R., primary, Ng, Tony, primary, Offin, Michael, primary, Isbell, James M., primary, Jones, David R., primary, Yu, Helena A., primary, Thyparambil, Sheeno, primary, Liao, Wei-Li, primary, Bhalkikar, Anuja, primary, Cecchi, Fabiola, primary, Hyman, David M., primary, Lewis, Jason S., primary, Buonocore, Darren J., primary, Ho, Alan L., primary, Makker, Vicky, primary, Reis-Filho, Jorge S., primary, Razavi, Pedram, primary, Arcila, Maria E., primary, Kris, Mark G., primary, Poirier, John T., primary, Shen, Ronglai, primary, Tsurutani, Junji, primary, Ulaner, Gary A., primary, de Stanchina, Elisa, primary, Rosen, Neal, primary, Rudin, Charles M., primary, and Scaltriti, Maurizio, primary
- Published
- 2023
- Full Text
- View/download PDF
192. Data from INK4 Tumor Suppressor Proteins Mediate Resistance to CDK4/6 Kinase Inhibitors
- Author
-
Li, Qing, primary, Jiang, Baishan, primary, Guo, Jiaye, primary, Shao, Hong, primary, Del Priore, Isabella S., primary, Chang, Qing, primary, Kudo, Rei, primary, Li, Zhiqiang, primary, Razavi, Pedram, primary, Liu, Bo, primary, Boghossian, Andrew S., primary, Rees, Matthew G., primary, Ronan, Melissa M., primary, Roth, Jennifer A., primary, Donovan, Katherine A., primary, Palafox, Marta, primary, Reis-Filho, Jorge S., primary, de Stanchina, Elisa, primary, Fischer, Eric S., primary, Rosen, Neal, primary, Serra, Violeta, primary, Koff, Andrew, primary, Chodera, John D., primary, Gray, Nathanael S., primary, and Chandarlapaty, Sarat, primary
- Published
- 2023
- Full Text
- View/download PDF
193. Supplementary Fig 2 from HER2-Mediated Internalization of Cytotoxic Agents in ERBB2 Amplified or Mutant Lung Cancers
- Author
-
Li, Bob T., primary, Michelini, Flavia, primary, Misale, Sandra, primary, Cocco, Emiliano, primary, Baldino, Laura, primary, Cai, Yanyan, primary, Shifman, Sophie, primary, Tu, Hai-Yan, primary, Myers, Mackenzie L., primary, Xu, Chongrui, primary, Mattar, Marissa, primary, Khodos, Inna, primary, Little, Megan, primary, Qeriqi, Besnik, primary, Weitsman, Gregory, primary, Wilhem, Clare J., primary, Lalani, Alshad S., primary, Diala, Irmina, primary, Freedman, Rachel A., primary, Lin, Nancy U., primary, Solit, David B., primary, Berger, Michael F., primary, Barber, Paul R., primary, Ng, Tony, primary, Offin, Michael, primary, Isbell, James M., primary, Jones, David R., primary, Yu, Helena A., primary, Thyparambil, Sheeno, primary, Liao, Wei-Li, primary, Bhalkikar, Anuja, primary, Cecchi, Fabiola, primary, Hyman, David M., primary, Lewis, Jason S., primary, Buonocore, Darren J., primary, Ho, Alan L., primary, Makker, Vicky, primary, Reis-Filho, Jorge S., primary, Razavi, Pedram, primary, Arcila, Maria E., primary, Kris, Mark G., primary, Poirier, John T., primary, Shen, Ronglai, primary, Tsurutani, Junji, primary, Ulaner, Gary A., primary, de Stanchina, Elisa, primary, Rosen, Neal, primary, Rudin, Charles M., primary, and Scaltriti, Maurizio, primary
- Published
- 2023
- Full Text
- View/download PDF
194. Data from Microsatellite Instability–High Endometrial Cancers with MLH1 Promoter Hypermethylation Have Distinct Molecular and Clinical Profiles
- Author
-
Manning-Geist, Beryl L., primary, Liu, Ying L., primary, Devereaux, Kelly A., primary, Paula, Arnaud Da Cruz, primary, Zhou, Qin C., primary, Ma, Weining, primary, Selenica, Pier, primary, Ceyhan-Birsoy, Ozge, primary, Moukarzel, Lea A., primary, Hoang, Timothy, primary, Gordhandas, Sushmita, primary, Rubinstein, Maria M., primary, Friedman, Claire F., primary, Aghajanian, Carol, primary, Abu-Rustum, Nadeem R., primary, Stadler, Zsofia K., primary, Reis-Filho, Jorge S., primary, Iasonos, Alexia, primary, Zamarin, Dmitriy, primary, Ellenson, Lora H., primary, Lakhman, Yulia, primary, Mandelker, Diana L., primary, and Weigelt, Britta, primary
- Published
- 2023
- Full Text
- View/download PDF
195. Metaplastic Breast Cancer: Current Understanding and Future Directions
- Author
-
Thomas, Alexandra, primary, Douglas, Emily, additional, Reis-Filho, Jorge S., additional, Gurcan, Metin N., additional, and Wen, Hannah Y., additional
- Published
- 2023
- Full Text
- View/download PDF
196. Molecular Biomarkers of Disease Outcomes and Mechanisms of Acquired Resistance to First-Line Osimertinib in Advanced EGFR-Mutant Lung Cancers
- Author
-
Choudhury, Noura J., primary, Marra, Antonio, additional, Sui, Jane S.Y., additional, Flynn, Jessica, additional, Yang, Soo-Ryum, additional, Falcon, Christina J., additional, Selenica, Pier, additional, Schoenfeld, Adam J., additional, Rekhtman, Natasha, additional, Gomez, Daniel, additional, Berger, Michael F., additional, Ladanyi, Marc, additional, Arcila, Maria, additional, Rudin, Charles M., additional, Riely, Gregory J., additional, Kris, Mark G., additional, Heller, Glenn, additional, Reis-Filho, Jorge S., additional, and Yu, Helena A., additional
- Published
- 2023
- Full Text
- View/download PDF
197. Supplementary Data from Microsatellite Instability–High Endometrial Cancers with MLH1 Promoter Hypermethylation Have Distinct Molecular and Clinical Profiles
- Author
-
Manning-Geist, Beryl L., primary, Liu, Ying L., primary, Devereaux, Kelly A., primary, Paula, Arnaud Da Cruz, primary, Zhou, Qin C., primary, Ma, Weining, primary, Selenica, Pier, primary, Ceyhan-Birsoy, Ozge, primary, Moukarzel, Lea A., primary, Hoang, Timothy, primary, Gordhandas, Sushmita, primary, Rubinstein, Maria M., primary, Friedman, Claire F., primary, Aghajanian, Carol, primary, Abu-Rustum, Nadeem R., primary, Stadler, Zsofia K., primary, Reis-Filho, Jorge S., primary, Iasonos, Alexia, primary, Zamarin, Dmitriy, primary, Ellenson, Lora H., primary, Lakhman, Yulia, primary, Mandelker, Diana L., primary, and Weigelt, Britta, primary
- Published
- 2023
- Full Text
- View/download PDF
198. Impact of immune infiltration signatures on prognosis in endometrial carcinoma is dependent on the underlying molecular subtype
- Author
-
Dessources, Kimberly, primary, Ferrando, Lorenzo, additional, Zhou, Qin C., additional, Iasonos, Alexia, additional, Abu-Rustum, Nadeem R., additional, Reis-Filho, Jorge S., additional, Riaz, Nadeem, additional, Zamarin, Dmitriy, additional, and Weigelt, Britta, additional
- Published
- 2023
- Full Text
- View/download PDF
199. Supplementary Tables from HER2 Reactivation through Acquisition of the HER2 L755S Mutation as a Mechanism of Acquired Resistance to HER2-targeted Therapy in HER2+ Breast Cancer
- Author
-
Xu, Xiaowei, primary, De Angelis, Carmine, primary, Burke, Kathleen A., primary, Nardone, Agostina, primary, Hu, Huizhong, primary, Qin, Lanfang, primary, Veeraraghavan, Jamunarani, primary, Sethunath, Vidyalakshmi, primary, Heiser, Laura M., primary, Wang, Nicholas, primary, Ng, Charlotte K.Y., primary, Chen, Edward S., primary, Renwick, Alexander, primary, Wang, Tao, primary, Nanda, Sarmistha, primary, Shea, Martin, primary, Mitchell, Tamika, primary, Rajendran, Mahitha, primary, Waters, Ian, primary, Zabransky, Daniel J., primary, Scott, Kenneth L., primary, Gutierrez, Carolina, primary, Nagi, Chandandeep, primary, Geyer, Felipe C., primary, Chamness, Gary C., primary, Park, Ben H., primary, Shaw, Chad A., primary, Hilsenbeck, Susan G., primary, Rimawi, Mothaffar F., primary, Gray, Joe W., primary, Weigelt, Britta, primary, Reis-Filho, Jorge S., primary, Osborne, C. Kent, primary, and Schiff, Rachel, primary
- Published
- 2023
- Full Text
- View/download PDF
200. Data from FGFR Signaling Promotes the Growth of Triple-Negative and Basal-Like Breast Cancer Cell Lines Both In Vitro and In Vivo
- Author
-
Sharpe, Rachel, primary, Pearson, Alex, primary, Herrera-Abreu, Maria T., primary, Johnson, Damian, primary, Mackay, Alan, primary, Welti, Jonathan C., primary, Natrajan, Rachael, primary, Reynolds, Andrew R., primary, Reis-Filho, Jorge S., primary, Ashworth, Alan, primary, and Turner, Nicholas C., primary
- Published
- 2023
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.