151. Computational Analysis of Stability of the β-Sheet Structure
- Author
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Minoru Tsuda, Tyuji Hoshino, Takahiro Tsuchiya, Daisuke Katagiri, and Masayuki Hata
- Subjects
Computational model ,Basis (linear algebra) ,Chemistry ,Computation ,Ab initio ,Beta sheet ,Energy minimization ,Stability (probability) ,Surfaces, Coatings and Films ,Crystallography ,Chemical physics ,Materials Chemistry ,Molecule ,Physical and Theoretical Chemistry - Abstract
Ab initio quantum chemical calculations were carried out on the main factor responsible for the formation of β-sheet structures in specific regions of proteins. Geometry optimization was performed at the Hartree-Fock level using a 3-21G** basis functional set. Total energies of α-helix and β-sheet structures were compared using several types of computational models. The computational models for the β-sheet structure were constructed by extracting a part of the protein from X-ray crystallographic data of HIV-1 or myosin, and the computational models for the α-helix structure were constructed by modifying the model for the β-sheet structure. The results of computations indicated that all helix-like structures were more stable than were the β-sheet structures under the condition of absence of any other molecules. On the other hand, all of the β-sheet structures became more stable than the helix-like structures when water molecules existed around them. This finding suggests that β-sheet structures are stabilized by the presence of water molecules and are primarily determined by local interaction among several neighboring residues.
- Published
- 2002
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