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Motivation: Beta-diversity quantitatively measures the difference among microbial communities thus enlightening the association between microbiome composition and environment properties or host phenotypes. The beta-diversity analysis mainly relies on distances among microbiomes that are calculated by all microbial features. However, in some cases, only a small fraction of members in a community plays crucial roles. Such a tiny proportion is insufficient to alter the overall distance, which is always missed by end-to-end comparison. On the other hand, beta-diversity pattern can also be interfered due to the data sparsity when only focusing on nonabundant microbes., Results: Here, we develop Flex Meta-Storms (FMS) distance algorithm that implements the "local alignment" of microbiomes for the first time. Using a flexible extraction that considers the weighted phylogenetic and functional relations of microbes, FMS produces a normalized phylogenetic distance among members of interest for microbiome pairs. We demonstrated the advantage of FMS in detecting the subtle variations of microbiomes among different states using artificial and real datasets, which were neglected by regular distance metrics. Therefore, FMS effectively discriminates microbiomes with higher sensitivity and flexibility, thus contributing to in-depth comprehension of microbe-host interactions, as well as promoting the utilization of microbiome data such as disease screening and prediction., Availability and Implementation: FMS is implemented in C++, and the source code is released at https://github.com/qdu-bioinfo/flex-meta-storms., (© The Author(s) 2023. Published by Oxford University Press.)

Neuropathic pain (NP) is a common pain disease that seriously affects the quality of life and physical and mental health of patients. Daphnetin is extracted from the Daphne giraldii Nitsche and has the structure of 7,8-dihydroxy coumarin. As a natural product, daphnetin displays a wide range of pharmacological activities, such as analgesia and anti-inflammatory activities, but whether it is able to improve NP through anti-inflammatory effects is unknown. Therefore, this paper intends to investigate the mechanism of daphnetin in improving NP rats affected by the intrathecal injection of tumor necrosis factor-α (TNF-α) from the perspective of anti-inflammation. Our results showed that daphnetin significantly improved hyperalgesia in NP rats. Daphnetin inhibited the activation and polarization of glial cells and neurons in the spinal cord of NP rats and reduced the expression of mRNA and protein of inflammatory factors and chemokine pairs in the spinal cord. Daphnetin inhibited the polarization of human microglia cell 3 (HMC3) cells and human glioma cells (U251) cells toward M1 microglia and A1 astrocytes, respectively, and induced the conversion of M1 microglia and A1 astrocytes to M2 microglia and A2 astrocytes, respectively. In conclusion, daphnetin ameliorates NP by inhibiting the expression of inflammatory factors and chemokines and the polarization of glial cells in the spinal cord of NP rats. This study provides a theoretical basis for the treatment of NP with daphnetin to expand the clinical application of daphnetin.

Background: Neuropathic pain (NP) caused by the injury or dysfunction of the nervous system is a chronic pain state accompanied by hyperalgesia, and the available clinical treatment is relatively scarce. Hyperalgesia mediated by pro-inflammatory factors and chemokines plays an important role in the occurrence and maintenance of NP., Data Treatment: Therefore, we conducted a systematic literature review of experimental NP (PubMed Medline), in order to find the mechanism of inducing central sensitization and explore the intervention methods of hyperalgesia caused by real or simulated injury., Result: In this review, we sorted out the activation pathways of microglia, astrocytes and neurons, and the process of crosstalk among them. It was found that in NP, the microglia P2X4 receptor is the key target, which can activate the mitogen-activated protein kinase pathway inward and then activate astrocytes and outwardly activate neuronal tropomyosin receptor kinase B receptor to activate neurons. At the same time, activated neurons continue to maintain the activation of astrocytes and microglia through chemokines on CXCL13/CXCR5 and CX3CL1/CX3CR1. This crosstalk process is the key to maintaining NP., Conclusion: We summarize the further research on crosstalk among neurons, microglia, and astrocytes in the central nervous system, elaborate the ways and connections of relevant crosstalk, and find potential crosstalk targets, which provides a reference for drug development and preclinical research., (© 2022 The Authors. Brain and Behavior published by Wiley Periodicals LLC.)

To investigate the delayed release characteristics of CO gas in the initial stage of the low-temperature oxidation of coal, closed oxygen consumption experiments were conducted on coal samples taken from the Hongqingliang coal mine, and the corresponding relationship between the CO concentration and time in the initial stage of the experimental reaction was analyzed. A physical adsorption model of the macromolecules in coal for O 2 and CO was established, and the difference in the competitive adsorption between the CO and O 2 gas molecules on the coal surface was analyzed from a microscopic perspective using the grand canonical ensemble Monte Carlo simulation. The results showed a delayed CO release phenomenon in the initial stage of the reaction in all the experiments, and the delayed time of CO release was negatively correlated with the temperature; the relationship between the adsorption amounts of CO and O 2 in the molecular structure model of coal was CO > O 2 . With increasing temperature, the adsorption capacity of the two gases decreased. Under the same conditions, there was competitive adsorption of the mixture of CO and O 2 by coal, with the adsorption capacity of CO being much greater than that of O 2 . The adsorption of CO gas molecules by coal played an inhibitory role in the release of CO gas in the initial oxidation stage. The study results are expected to help understand the CO generation characteristics in the goaf of coal seam working faces and thus prevent coal mine disasters., (© 2022. The Author(s).)

Here, we report a simple but effective nose/tongue-mimic sensor array based on HAuCl 4 /3,3',5,5'-tetramethylbenzidine (TMB) for colorimetric discrimination and determination of antioxidants. Two concentrations of HAuCl 4 were employed as receptor units to construct the colorimetric sensor array. The sensing strategy is based on the fact that HAuCl 4 with different concentrations (0.08 and 0.03 mM) could oxidize TMB to oxidized TMB (oxTMB), resulting in a blue and green color solution, respectively, corresponding to an absorption peak centered at 440 nm and 657 nm. However, the presence of different antioxidants could cause the reduction in HAuCl 4 , leading to the fading of the blue and green color and the decrease in the absorbance at 440 nm and 657 nm to varying degrees. Based on the above phenomena, by taking advantage of linear discriminant analysis (LDA), five antioxidants (i.e. ascorbic acid (AA), melatonin (MT), uric acid (UA), tannic acid (TCA), and glycine (Gly)) at five concentrations (200, 120, 60, 20, and 1 nM) were successfully discriminated both in buffer and serum. More importantly, this approach is simple, fast, and without the use of any nanomaterials.

Kitchen wastes (KW) have been widely investigated for bio-ethanol production, while no study utilizes KW as ethanol source to stimulate the methanogenic communities to perform direct interspecies electron transfer (DIET), since the excess acidity contained after the biological ethanol-type fermentation pretreatment (BEFP) can seriously inhibit the DIET-based syntrophic metabolism. In this study, a strategy that utilized waste activated sludge (WAS) as co-substrate to relieve the excess acidity after BEFP during anaerobic co-digestion (AcoD) was proposed. The results showed that, under the mixed ratio of 1:2 and 1:5 (KW:WAS, volume ratio), both methane production and organic compound removal evidently increased, compared with that treating the sole WAS. Conversely, under the other mixed ratios (sole KW, 5:1, 2:1 and 1:1), no methane but the evident hydrogen production was detected, and syntrophic metabolism of organic acids and alcohols was prevented. Three-dimensional excitation emission matrix (3D-EEM) analysis showed that the protein-like organic compounds contained in both KW and WAS were effectively degraded. Furthermore, the maximum methane production potential from WAS during AcoD (260.5 ± 4.1 and 264.3 ± 2.7 mL/g-COD) was higher than that treating sole WAS (250.8 ± 0.1 mL/g-COD). Microbial community analysis showed that, some genera capable of metabolizing the complex organic compounds with the reduction of the elemental sulfur or equipped with the electrically conductive pili were specially enriched during AcoD under the mixed ratio of 1:2 and 1:5. They might proceed DIET with methanogens, such as Methanosarcina and Methanospirillum species, to maintain the syntrophic metabolism effective and stable, since the abundance of both Methanosarcina and Methanospirillum species evidently increased., Competing Interests: Declaration of competing interest The authors declare that they have no known competing interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2020 Elsevier Ltd. All rights reserved.)

The photovoltaic performance of axial and radial pin junction GaAs nanocone array solar cells is investigated. Compared with the cylinder nanowire arrays, the nanocone arrays not only improve the whole optical absorption but more importantly enhance the effective absorption (absorption in the depletion region). The enhanced effective absorption is attributed to the downward shift and extension of the absorption region induced by the shrinking top, which dramatically suppresses the absorption loss in the high-doped top region and enhances the absorption in the depletion region. The highest conversion efficiencies for axial and radial GaAs nanocone solar cells are 20.1% and 17.4%, obtained at a slope angle of 5° and 6°, respectively, both of which are much higher than their cylinder nanowire counterparts. The nanocone structures are promising candidates for high-efficiency solar cells.

In this work, a metallic probe with a sharp tip and two half-circular nanostructures on its base is introduced and investigated. The proposed design aims at improving the detection performance of a probe for scattering scanning near-field optical microscopy in terms of enhanced signal-to-noise ratio. Under the premise of processing feasibility, the structure of the probe is designed and optimized with three-dimensional finite-difference time-domain method. And then the performance and optical property of the probe are theoretically investigated and experimentally demonstrated using a scanning near-field optical microscope with aperture probe. It is indicated that a tightly confined optical field with significantly reduced far-field background can be achieved at the tip apex of the probe.