15,638 results on '"Zhou, Tao"'
Search Results
152. Deficiency of Trex1 leads to spontaneous development of type 1 diabetes
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Zhao, Jiang-Man, Su, Zhi-Hui, Han, Qiu-Ying, Wang, Miao, Liu, Xin, Li, Jing, Huang, Shao-Yi, Chen, Jing, Li, Xiao-Wei, Chen, Xia-Ying, Guo, Zeng-Lin, Jiang, Shuai, Pan, Jie, Li, Tao, Xue, Wen, and Zhou, Tao
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- 2024
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153. Effect of temperature and additives on recycled waterborne coating preparation and performance for construction and demolition waste reutilization
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Chen, Bo, Wang, Yan, Zheng, Yi, Han, Longxi, Zhou, Tao, and Zhao, Youcai
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- 2024
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154. Towards growth of pure AB-stacked bilayer graphene single crystals
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Zhang, Xiaowen, Zhou, Tao, Ren, Yunlong, Feng, Zuo, Qiao, Ruixi, Wang, Qinghe, Wang, Bin, Bai, Jinxia, Wu, Muhong, Tang, Zhilie, Zhou, Xu, Liu, Kaihui, and Xu, Xiaozhi
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- 2024
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155. Using Laterite-Nickel Ore as Raw Material, Study on the Efficient Separation of Silicon with NaOH Alkaline Auxiliary Agent to Prepare Li2MnSiO4 Cathode for Li-ion Battery
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Li, Yuan, Zhou, Tao, Xiong, Shijie, and Huang, Degang
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- 2024
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156. Densification study of sodium zirconium phosphate-type ceramic for immobilizing radionuclides of Sr prepared with microwave sintering from uranium tailing sand
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Li, Jiawei, Chen, Gaiyuan, Zhang, QiuCai, Shi, Keyou, Zhang, Tiejun, Xie, Yupeng, Yang, Yang, Zhou, Tao, Huang, Kun, Mai, Yuzhen, and Liu, Yong
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- 2024
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157. MTNR1B genotype and effects of carbohydrate quantity and dietary glycaemic index on glycaemic response to an oral glucose load: the OmniCarb trial
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Heianza, Yoriko, Zhou, Tao, Wang, Xuan, Furtado, Jeremy D., Appel, Lawrence J., Sacks, Frank M., and Qi, Lu
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- 2024
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158. Engineering classification recycling of spent lithium-ion batteries through pretreatment: a comprehensive review from laboratory to scale-up application
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Yan, Shu-Xuan, Jiang, You-Zhou, Chen, Xiang-Ping, Yuan, Lu, Min, Ting-Ting, Cao, Yu, Peng, Wan-Li, and Zhou, Tao
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- 2024
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159. COVID-19 spreading patterns in family clusters reveal gender roles in China
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Liao, Jingyi, Liu, Xiao Fan, Xu, Xiao-Ke, and Zhou, Tao
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Physics - Physics and Society - Abstract
Unfolding different gender roles is preceding the efforts to reduce gender inequality. This paper analyzes COVID-19 family clusters outside Hubei Province in mainland China during the 2020 outbreak, revealing significant differences in spreading patterns across gender and family roles. Results show that men are more likely to be the imported cases of a family cluster, and women are more likely to be infected within the family. This finding provides new supportive evidence of the men as breadwinner and women as homemaker (MBWH) gender roles in China. Further analyses reveal that the MBWH pattern is stronger in eastern than in western China, stronger for younger than for elder people. This paper offers not only valuable references for formulating gender-differentiated epidemic prevention policies but also an exemplification for studying group differences in similar scenarios., Comment: 13 pages, 5 figures, 2 tables
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- 2023
160. Collaborative Recommendation Model Based on Multi-modal Multi-view Attention Network: Movie and literature cases
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Hu, Zheng, Cai, Shi-Min, Wang, Jun, and Zhou, Tao
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Computer Science - Information Retrieval - Abstract
The existing collaborative recommendation models that use multi-modal information emphasize the representation of users' preferences but easily ignore the representation of users' dislikes. Nevertheless, modelling users' dislikes facilitates comprehensively characterizing user profiles. Thus, the representation of users' dislikes should be integrated into the user modelling when we construct a collaborative recommendation model. In this paper, we propose a novel Collaborative Recommendation Model based on Multi-modal multi-view Attention Network (CRMMAN), in which the users are represented from both preference and dislike views. Specifically, the users' historical interactions are divided into positive and negative interactions, used to model the user's preference and dislike views, respectively. Furthermore, the semantic and structural information extracted from the scene is employed to enrich the item representation. We validate CRMMAN by designing contrast experiments based on two benchmark MovieLens-1M and Book-Crossing datasets. Movielens-1m has about a million ratings, and Book-Crossing has about 300,000 ratings. Compared with the state-of-the-art knowledge-graph-based and multi-modal recommendation methods, the AUC, NDCG@5 and NDCG@10 are improved by 2.08%, 2.20% and 2.26% on average of two datasets. We also conduct controlled experiments to explore the effects of multi-modal information and multi-view mechanism. The experimental results show that both of them enhance the model's performance.
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- 2023
161. Bounded KRnet and its applications to density estimation and approximation
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Zeng, Li, Wan, Xiaoliang, and Zhou, Tao
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Computer Science - Machine Learning - Abstract
In this paper, we develop an invertible mapping, called B-KRnet, on a bounded domain and apply it to density estimation/approximation for data or the solutions of PDEs such as the Fokker-Planck equation and the Keller-Segel equation. Similar to KRnet, the structure of B-KRnet adapts the pseudo-triangular structure into a normalizing flow model. The main difference between B-KRnet and KRnet is that B-KRnet is defined on a hypercube while KRnet is defined on the whole space, in other words, a new mechanism is introduced in B-KRnet to maintain the exact invertibility. Using B-KRnet as a transport map, we obtain an explicit probability density function (PDF) model that corresponds to the pushforward of a prior (uniform) distribution on the hypercube. It can be directly applied to density estimation when only data are available. By coupling KRnet and B-KRnet, we define a deep generative model on a high-dimensional domain where some dimensions are bounded and other dimensions are unbounded. A typical case is the solution of the stationary kinetic Fokker-Planck equation, which is a PDF of position and momentum. Based on B-KRnet, we develop an adaptive learning approach to approximate partial differential equations whose solutions are PDFs or can be treated as PDFs. A variety of numerical experiments is presented to demonstrate the effectiveness of B-KRnet., Comment: 26 pages, 13 figures
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- 2023
162. Input Augmentation with SAM: Boosting Medical Image Segmentation with Segmentation Foundation Model
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Zhang, Yizhe, Zhou, Tao, Wang, Shuo, Liang, Peixian, and Chen, Danny Z.
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Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Artificial Intelligence ,Computer Science - Machine Learning - Abstract
The Segment Anything Model (SAM) is a recently developed large model for general-purpose segmentation for computer vision tasks. SAM was trained using 11 million images with over 1 billion masks and can produce segmentation results for a wide range of objects in natural scene images. SAM can be viewed as a general perception model for segmentation (partitioning images into semantically meaningful regions). Thus, how to utilize such a large foundation model for medical image segmentation is an emerging research target. This paper shows that although SAM does not immediately give high-quality segmentation for medical image data, its generated masks, features, and stability scores are useful for building and training better medical image segmentation models. In particular, we demonstrate how to use SAM to augment image input for commonly-used medical image segmentation models (e.g., U-Net). Experiments on three segmentation tasks show the effectiveness of our proposed SAMAug method. The code is available at \url{https://github.com/yizhezhang2000/SAMAug}., Comment: GitHub: https://github.com/yizhezhang2000/SAMAug. Comments and questions are welcome
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- 2023
163. Can SAM Segment Polyps?
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Zhou, Tao, Zhang, Yizhe, Zhou, Yi, Wu, Ye, and Gong, Chen
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Computer Science - Computer Vision and Pattern Recognition - Abstract
Recently, Meta AI Research releases a general Segment Anything Model (SAM), which has demonstrated promising performance in several segmentation tasks. As we know, polyp segmentation is a fundamental task in the medical imaging field, which plays a critical role in the diagnosis and cure of colorectal cancer. In particular, applying SAM to the polyp segmentation task is interesting. In this report, we evaluate the performance of SAM in segmenting polyps, in which SAM is under unprompted settings. We hope this report will provide insights to advance this polyp segmentation field and promote more interesting works in the future. This project is publicly at https://github.com/taozh2017/SAMPolyp., Comment: Technical Report
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- 2023
164. AI-assisted Automated Workflow for Real-time X-ray Ptychography Data Analysis via Federated Resources
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Babu, Anakha V, Bicer, Tekin, Kandel, Saugat, Zhou, Tao, Ching, Daniel J., Henke, Steven, Veseli, Siniša, Chard, Ryan, Miceli, Antonino, and Cherukara, Mathew Joseph
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Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Distributed, Parallel, and Cluster Computing ,Electrical Engineering and Systems Science - Image and Video Processing - Abstract
We present an end-to-end automated workflow that uses large-scale remote compute resources and an embedded GPU platform at the edge to enable AI/ML-accelerated real-time analysis of data collected for x-ray ptychography. Ptychography is a lensless method that is being used to image samples through a simultaneous numerical inversion of a large number of diffraction patterns from adjacent overlapping scan positions. This acquisition method can enable nanoscale imaging with x-rays and electrons, but this often requires very large experimental datasets and commensurately high turnaround times, which can limit experimental capabilities such as real-time experimental steering and low-latency monitoring. In this work, we introduce a software system that can automate ptychography data analysis tasks. We accelerate the data analysis pipeline by using a modified version of PtychoNN -- an ML-based approach to solve phase retrieval problem that shows two orders of magnitude speedup compared to traditional iterative methods. Further, our system coordinates and overlaps different data analysis tasks to minimize synchronization overhead between different stages of the workflow. We evaluate our workflow system with real-world experimental workloads from the 26ID beamline at Advanced Photon Source and ThetaGPU cluster at Argonne Leadership Computing Resources., Comment: 7 pages, 1 figure, to be published in High Performance Computing for Imaging Conference, Electronic Imaging (HPCI 2023)
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- 2023
165. Self-Paced Learning for Open-Set Domain Adaptation
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Liu, Xinghong, Zhou, Yi, Zhou, Tao, Qin, Jie, and Liao, Shengcai
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Computer Science - Computer Vision and Pattern Recognition - Abstract
Domain adaptation tackles the challenge of generalizing knowledge acquired from a source domain to a target domain with different data distributions. Traditional domain adaptation methods presume that the classes in the source and target domains are identical, which is not always the case in real-world scenarios. Open-set domain adaptation (OSDA) addresses this limitation by allowing previously unseen classes in the target domain. Open-set domain adaptation aims to not only recognize target samples belonging to common classes shared by source and target domains but also perceive unknown class samples. We propose a novel framework based on self-paced learning to distinguish common and unknown class samples precisely, referred to as SPLOS (self-paced learning for open-set). To utilize unlabeled target samples for self-paced learning, we generate pseudo labels and design a cross-domain mixup method tailored for OSDA scenarios. This strategy minimizes the noise from pseudo labels and ensures our model progressively learns common class features of the target domain, beginning with simpler examples and advancing to more complex ones. Furthermore, unlike existing OSDA methods that require manual hyperparameter $threshold$ tuning to separate common and unknown classes, our approach self-tunes a suitable threshold, eliminating the need for empirical tuning during testing. Comprehensive experiments illustrate that our method consistently achieves superior performance on different benchmarks compared with various state-of-the-art methods.
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- 2023
166. Proximity effect and inverse proximity effect in a topological-insulator/iron-based-superconductor heterostructure
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Zhu, Qi-Guang and Zhou, Tao
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Condensed Matter - Superconductivity ,Condensed Matter - Strongly Correlated Electrons - Abstract
We theoretically study the proximity effect and the inverse proximity effect in a topological insulator/iron-based superconductor heterostructure based on the microscopic model. The superconducting order parameter is self-consistently calculated. Its magnitude decreases when the coupling of these two systems increases. The induced pairing order parameter exhibits negative and positive values, while the negative pairing near the $\Gamma=(0,0)$ point is dominant. This parameter has twofold symmetry and includes an $s$-wave component and a $d$-wave component. The magnitude of the induced pairing order parameter has a maximal value at the coupling strength $t_p=0.3\approx 0.06$ eV. The spectral function and the local density of states are calculated and may be used to probe the proximity effect. We also discuss the feedback of the topological insulator to the iron-based superconductor layer. The normal-state Fermi surface is distorted by the coupling, and additional Fermi pockets are induced. An effective spin-orbit interaction term is induced. In the superconducting state, the previous fourfold symmetry of the order parameter is broken, and a $d$-wave component pairing term is also induced. Our main results can be well understood by analyzing the Fermi surfaces of the original systems., Comment: 9 pages, 5 figures
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- 2023
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167. An overview of a coordinated control technique for wind turbines and energy storage participating grid frequency regulation
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ZHOU Tao, XIANG Yongjian, DU Keke, and CHEN Zhong
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new-type power system ,primary frequency regulation ,integrated wind turbine-storage system ,energy storage system ,wind power generation ,Electrical engineering. Electronics. Nuclear engineering ,TK1-9971 - Abstract
The frequency regulation capability of wind turbines is insufficient to satisfy the needs of grid frequency regulation. The characteristics of energy storage, such as flexible control, substantial throughput capacity, and rapid response rates, can effectively complement wind turbine limitations. Thereby, these facets advocate for incorporating an integrated wind-and-storage system in the practice of grid frequency control. This paper delves into the principles and control strategies associated with the participation of wind turbines and energy storage in the regulation of power system frequency. It outlines the principles and features of energy storage participating in frequency regulation, as well as models for frequency control and the control strategies. Moreover, the paper scrutinizes the characteristics and effects of different and hybrid energy storage systems. Subsequently, it elucidates the principles of frequency control for wind turbines and various control strategies, classifying the control modes of wind turbines into: variable-pitch control, rotor kinetic energy control, and unified control. In conclusion, the current state of advancements and prospects in this field are summarized and envisioned.
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- 2024
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168. Influence of shunt reactor compensation scheme on overvoltage distribution along 500 kV submarine cable
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CAO Yanming, LI Yanan, ZHOU Tao, and LUO Longfu
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submarine cable ,charging current ,offshore wind power ,overvoltage ,reactive power compensation ,shunt reactor ,Applications of electric power ,TK4001-4102 - Abstract
AC submarine cable is an important component in AC transmission system of offshore wind farms. However, the issue of charging current limits its application in offshore wind power with long-distance and large-capacity. Taking HYJQF41-F290/500 kV single-core AC submarine cable as an example, the overvoltage distribution along the cable in different working conditions is analyzed, considering the long-distance and high-voltage transmission. The simulation model of the cable is established and its parameters are corrected firstly. According to the different compensation degrees of the shunt reactor, the capacity of the shunt reactor under the configuration scheme of single-end compensation and two-end compensation calculated out. Finally, based on the single-phase grounding fault, the closing and opening conditions in the high-voltage and long-distance wind farm models, and the distribution law of overvoltage along the submarine cable under different reactive power compensation schemes is tested by simulation. The results show that the maximum overvoltage of submarine cables appears in different positions with different compensation schemes. Based on this, the selection methods for high-voltage submarine cable and overvoltage in insulation level design of substation equipment are given out under different compensation schemes, which have certain guiding significance for engineering practice.
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- 2024
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169. Study on the mechanical degradation characteristics and damage evolution of thermally damaged granite
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ZHOU Tao, FAN Yonglin, CHEN Jiarong, and ZHOU Changtai
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high-temperature treatment ,thermal damage ,crack density ,compressive strength ,Engineering geology. Rock mechanics. Soil mechanics. Underground construction ,TA703-712 ,Mining engineering. Metallurgy ,TN1-997 - Abstract
The high geothermal environments encountered in deep mineral mining induce thermal damage to rocks, which can trigger geotechnical disasters in deep engineering projects. Therefore, exploring the degradation characteristics of rock mechanical properties and the damage evolution laws after high-temperature exposure is of significant importance for rock engineering in deep high-geothermal environments. By subjecting granite to the temperature range from ambient to 1200 ℃ and conducting macro-microscopic studies using optical microscopy, the degradation characteristics of Young's modulus and compressive strength in granite samples post various high-temperature treatments were investigated. Additionally, an analysis was performed on the internal cracks and damage evolution in thermally damaged granite from a microscopic perspective. The experimental results demonstrate that high-temperature treatments significantly reduce the mechanical properties of granite. The granite's compressive strength and Young's modulus decrease with increasing treatment temperatures, and the extent of crack development increases with temperature. The mechanic cal properties of granite are highly correlated with the development of internal crack structures. There is a power function relationship between the crack density and compressive strength in granite after different temperature treatments, indicating that crack density can effectively reflect the extent of thermal damage in granite.
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- 2024
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170. Automatic detection of defects in electronic plastic packaging using deep convolutional neural networks
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Ren, Wanchun, Zhu, Pengcheng, Cai, Shaofeng, Huang, Yi, Zhao, Haoran, Hama, Youji, Yan, Zhu, Zhou, Tao, Pu, Junde, and Yang, Hongwei
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- 2024
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171. Genome-wide identification and expression analysis of the BZR gene family in Zanthoxylum armatum DC and functional analysis of ZaBZR1 in drought tolerance
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Jin, Zhengyu, Zhou, Tao, Chen, Jiajia, Lang, Chaoting, Zhang, Qingqing, Qin, Jin, Lan, Haibo, Li, Jianrong, and Zeng, Xiaofang
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- 2024
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172. Author Correction: Ultrastable cathodes enabled by compositional and structural dual-gradient design
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Liu, Tongchao, Yu, Lei, Liu, Junxiang, Dai, Alvin, Zhou, Tao, Wang, Jing, Huang, Weiyuan, Li, Luxi, Li, Matthew, Li, Tianyi, Huang, Xiaojing, Xiao, Xianghui, Ge, Mingyuan, Ma, Lu, Zhuo, Zengqing, Amine, Rachid, Chu, Yong S., Lee, Wah-Keat, Wen, Jianguo, and Amine, Khalil
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- 2024
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173. Correction to: Examining generative AI user disclosure intention: an ELM perspective
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Zhou, Tao and Wu, Xiaoying
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- 2024
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174. IB-UQ: Information bottleneck based uncertainty quantification for neural function regression and neural operator learning
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Guo, Ling, Wu, Hao, Zhou, Wenwen, Wang, Yan, and Zhou, Tao
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Mathematics - Numerical Analysis ,Computer Science - Machine Learning - Abstract
We propose a novel framework for uncertainty quantification via information bottleneck (IB-UQ) for scientific machine learning tasks, including deep neural network (DNN) regression and neural operator learning (DeepONet). Specifically, we incorporate the bottleneck by a confidence-aware encoder, which encodes inputs into latent representations according to the confidence of the input data belonging to the region where training data is located, and utilize a Gaussian decoder to predict means and variances of outputs conditional on representation variables. Furthermore, we propose a data augmentation based information bottleneck objective which can enhance the quantification quality of the extrapolation uncertainty, and the encoder and decoder can be both trained by minimizing a tractable variational bound of the objective. In comparison to uncertainty quantification (UQ) methods for scientific learning tasks that rely on Bayesian neural networks with Hamiltonian Monte Carlo posterior estimators, the model we propose is computationally efficient, particularly when dealing with large-scale data sets. The effectiveness of the IB-UQ model has been demonstrated through several representative examples, such as regression for discontinuous functions, real-world data set regression, learning nonlinear operators for partial differential equations, and a large-scale climate model. The experimental results indicate that the IB-UQ model can handle noisy data, generate robust predictions, and provide confident uncertainty evaluation for out-of-distribution data., Comment: 27 pages, 22figures
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- 2023
175. GRB 220408B: A Three-Episode Burst from a Precessing Jet
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Zhang, Zijian, Yin, Yihan, Wang, Chenyu, Wang, Xiangyu Ivy, Yang, Jun, Meng, Yan-Zhi, Liu, Zi-Ke, Chen, Guo-Yin, Fu, Xiaoping, Gao, Huaizhong, Li, Sihao, Liu, Yihui, Long, Xiangyun, Ma, Yong-Chang, Pan, Xiaofan, Sun, Yuanze, Wu, Wei, Yang, Zirui, Ye, Zhizhen, Yu, Xiaoyu, Zhao, Shuheng, Zheng, Xutao, Zhou, Tao, Tang, Qing-Wen, Yan, Qiurong, Zhou, Rong, Wang, Zhonghai, Feng, Hua, Zeng, Ming, and Zhang, Bin-Bin
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Astrophysics - High Energy Astrophysical Phenomena - Abstract
Jet precession has previously been proposed to explain the apparently repeating features in the light curves of a few gamma-ray bursts (GRBs). In this {\it Letter}, we further apply the precession model to a bright GRB 220408B by examining both its temporal and spectral consistency with the predictions of the model. As one of the recently confirmed GRBs observed by our GRID CubeSat mission, GRB 220408B is noteworthy as it exhibits three apparently similar emission episodes. Furthermore, the similarities are reinforced by their strong temporal correlations and similar features in terms of spectral evolution and spectral lags. Our analysis demonstrates that these features can be well explained by the modulated emission of a Fast-Rise-Exponential-Decay (FRED) shape light curve intrinsically produced by a precessing jet with a precession period of $18.4 \pm 0.2$ seconds, a nutation period of $11.1 \pm 0.2$ seconds and viewed off-axis. This study provides a straightforward explanation for the complex yet similar multi-episode GRB light curves., Comment: 11 pages, 3 tables, 8 figures
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- 2023
176. Failure-informed adaptive sampling for PINNs, Part II: combining with re-sampling and subset simulation
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Gao, Zhiwei, Tang, Tao, Yan, Liang, and Zhou, Tao
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Mathematics - Numerical Analysis ,Statistics - Machine Learning - Abstract
This is the second part of our series works on failure-informed adaptive sampling for physic-informed neural networks (FI-PINNs). In our previous work \cite{gao2022failure}, we have presented an adaptive sampling framework by using the failure probability as the posterior error indicator, where the truncated Gaussian model has been adopted for estimating the indicator. In this work, we present two novel extensions to FI-PINNs. The first extension consist in combining with a re-sampling technique, so that the new algorithm can maintain a constant training size. This is achieved through a cosine-annealing, which gradually transforms the sampling of collocation points from uniform to adaptive via training progress. The second extension is to present the subset simulation algorithm as the posterior model (instead of the truncated Gaussian model) for estimating the error indicator, which can more effectively estimate the failure probability and generate new effective training points in the failure region. We investigate the performance of the new approach using several challenging problems, and numerical experiments demonstrate a significant improvement over the original algorithm.
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- 2023
177. Orientation-dependent electron-phonon coupling in interfacial superconductors LaAlO3/KTaO3
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Chen, Xiaoyang, Yu, Tianlun, Liu, Yuan, Sun, Yanqiu, Lei, Minyinan, Guo, Nan, Fan, Yu, Sun, Xingtian, Zhang, Meng, Alarab, Fatima, Strokov, Vladimir N., Wang, Yilin, Zhou, Tao, Liu, Xinyi, Lu, Fanjin, Liu, Weitao, Xie, Yanwu, Peng, Rui, Xu, Haichao, and Feng, Donglai
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Condensed Matter - Superconductivity - Abstract
The emergent superconductivity at the LaAlO3/KTaO3 interfaces exhibits a mysterious dependence on the KTaO3 crystallographic orientations. Here we show, by soft X-ray angle-resolved photoemission spectroscopy, that the interfacial superconductivity is contributed by mobile electrons with unexpected quasi-three-dimensional character, beyond the "two-dimensional electron gas" scenario in describing oxide interfaces. At differently-oriented interfaces, the quasi-three-dimensional electron gas ubiquitously exists and spatially overlaps with the small q Fuchs-Kliewer surface phonons. Intriguingly, electrons and the Fuchs-Kliewer phonons couple with different strengths depending on the interfacial orientations, and the stronger coupling correlates with the higher superconducting transition temperature. Our results provide a natural explanation for the orientation-dependent superconductivity, and the first evidence that interfacial orientations can affect electron-phonon coupling strength over several nanometers, which may have profound implications for the applications of oxide interfaces in general.
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- 2023
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178. Prompting Neural Machine Translation with Translation Memories
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Reheman, Abudurexiti, Zhou, Tao, Luo, Yingfeng, Yang, Di, Xiao, Tong, and Zhu, Jingbo
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Computer Science - Computation and Language - Abstract
Improving machine translation (MT) systems with translation memories (TMs) is of great interest to practitioners in the MT community. However, previous approaches require either a significant update of the model architecture and/or additional training efforts to make the models well-behaved when TMs are taken as additional input. In this paper, we present a simple but effective method to introduce TMs into neural machine translation (NMT) systems. Specifically, we treat TMs as prompts to the NMT model at test time, but leave the training process unchanged. The result is a slight update of an existing NMT system, which can be implemented in a few hours by anyone who is familiar with NMT. Experimental results on several datasets demonstrate that our system significantly outperforms strong baselines., Comment: Accepted to AAAI 2023
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- 2023
179. Demonstration of an AI-driven workflow for autonomous high-resolution scanning microscopy
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Kandel, Saugat, Zhou, Tao, Babu, Anakha V, Di, Zichao, Li, Xinxin, Ma, Xuedan, Holt, Martin, Miceli, Antonino, Phatak, Charudatta, and Cherukara, Mathew
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Physics - Applied Physics ,Condensed Matter - Materials Science ,Physics - Instrumentation and Detectors - Abstract
With the continuing advances in scientific instrumentation, scanning microscopes are now able to image physical systems with up to sub-atomic-level spatial resolutions and sub-picosecond time resolutions. Commensurately, they are generating ever-increasing volumes of data, storing and analysis of which is becoming an increasingly difficult prospect. One approach to address this challenge is through self-driving experimentation techniques that can actively analyze the data being collected and use this information to make on-the-fly measurement choices, such that the data collected is sparse but representative of the sample and sufficiently informative. Here, we report the Fast Autonomous Scanning Toolkit (FAST) that combines a trained neural network, a route optimization technique, and efficient hardware control methods to enable a self-driving scanning microscopy experiment. The key features of our method are that: it does not require any prior information about the sample, it has a very low computational cost, and that it uses generic hardware controls with minimal experiment-specific wrapping. We test this toolkit in numerical experiments and a scanning dark-field x-ray microscopy experiment of a $WSe_2$ thin film, where our experiments show that a FAST scan of <25% of the sample is sufficient to produce both a high-fidelity image and a quantitative analysis of the surface distortions in the sample. We show that FAST can autonomously identify all features of interest in the sample while significantly reducing the scan time, the volume of data acquired, and dose on the sample. The FAST toolkit is easy to apply for any scanning microscopy modalities and we anticipate adoption of this technique will empower broader multi-level studies of the evolution of physical phenomena with respect to time, temperature, or other experimental parameters.
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- 2023
180. Multi-scale Transformer Network with Edge-aware Pre-training for Cross-Modality MR Image Synthesis
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Li, Yonghao, Zhou, Tao, He, Kelei, Zhou, Yi, and Shen, Dinggang
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Electrical Engineering and Systems Science - Image and Video Processing ,Computer Science - Computer Vision and Pattern Recognition - Abstract
Cross-modality magnetic resonance (MR) image synthesis can be used to generate missing modalities from given ones. Existing (supervised learning) methods often require a large number of paired multi-modal data to train an effective synthesis model. However, it is often challenging to obtain sufficient paired data for supervised training. In reality, we often have a small number of paired data while a large number of unpaired data. To take advantage of both paired and unpaired data, in this paper, we propose a Multi-scale Transformer Network (MT-Net) with edge-aware pre-training for cross-modality MR image synthesis. Specifically, an Edge-preserving Masked AutoEncoder (Edge-MAE) is first pre-trained in a self-supervised manner to simultaneously perform 1) image imputation for randomly masked patches in each image and 2) whole edge map estimation, which effectively learns both contextual and structural information. Besides, a novel patch-wise loss is proposed to enhance the performance of Edge-MAE by treating different masked patches differently according to the difficulties of their respective imputations. Based on this proposed pre-training, in the subsequent fine-tuning stage, a Dual-scale Selective Fusion (DSF) module is designed (in our MT-Net) to synthesize missing-modality images by integrating multi-scale features extracted from the encoder of the pre-trained Edge-MAE. Further, this pre-trained encoder is also employed to extract high-level features from the synthesized image and corresponding ground-truth image, which are required to be similar (consistent) in the training. Experimental results show that our MT-Net achieves comparable performance to the competing methods even using $70\%$ of all available paired data. Our code will be publicly available at https://github.com/lyhkevin/MT-Net., Comment: 13 pages, 16 figures. This paper has been accepted by IEEE TMI
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- 2022
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181. Feature Aggregation and Propagation Network for Camouflaged Object Detection
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Zhou, Tao, Zhou, Yi, Gong, Chen, Yang, Jian, and Zhang, Yu
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Computer Science - Computer Vision and Pattern Recognition - Abstract
Camouflaged object detection (COD) aims to detect/segment camouflaged objects embedded in the environment, which has attracted increasing attention over the past decades. Although several COD methods have been developed, they still suffer from unsatisfactory performance due to the intrinsic similarities between the foreground objects and background surroundings. In this paper, we propose a novel Feature Aggregation and Propagation Network (FAP-Net) for camouflaged object detection. Specifically, we propose a Boundary Guidance Module (BGM) to explicitly model the boundary characteristic, which can provide boundary-enhanced features to boost the COD performance. To capture the scale variations of the camouflaged objects, we propose a Multi-scale Feature Aggregation Module (MFAM) to characterize the multi-scale information from each layer and obtain the aggregated feature representations. Furthermore, we propose a Cross-level Fusion and Propagation Module (CFPM). In the CFPM, the feature fusion part can effectively integrate the features from adjacent layers to exploit the cross-level correlations, and the feature propagation part can transmit valuable context information from the encoder to the decoder network via a gate unit. Finally, we formulate a unified and end-to-end trainable framework where cross-level features can be effectively fused and propagated for capturing rich context information. Extensive experiments on three benchmark camouflaged datasets demonstrate that our FAP-Net outperforms other state-of-the-art COD models. Moreover, our model can be extended to the polyp segmentation task, and the comparison results further validate the effectiveness of the proposed model in segmenting polyps. The source code and results will be released at https://github.com/taozh2017/FAPNet., Comment: 12 pages, 6 figures, accepted by IEEE Transactions on Image Processing
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- 2022
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182. A Structure-guided Effective and Temporal-lag Connectivity Network for Revealing Brain Disorder Mechanisms
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Xia, Zhengwang, Zhou, Tao, Mamoon, Saqib, Alfakih, Amani, and Lu, Jianfeng
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Quantitative Biology - Neurons and Cognition ,Computer Science - Artificial Intelligence ,Electrical Engineering and Systems Science - Image and Video Processing - Abstract
Brain network provides important insights for the diagnosis of many brain disorders, and how to effectively model the brain structure has become one of the core issues in the domain of brain imaging analysis. Recently, various computational methods have been proposed to estimate the causal relationship (i.e., effective connectivity) between brain regions. Compared with traditional correlation-based methods, effective connectivity can provide the direction of information flow, which may provide additional information for the diagnosis of brain diseases. However, existing methods either ignore the fact that there is a temporal-lag in the information transmission across brain regions, or simply set the temporal-lag value between all brain regions to a fixed value. To overcome these issues, we design an effective temporal-lag neural network (termed ETLN) to simultaneously infer the causal relationships and the temporal-lag values between brain regions, which can be trained in an end-to-end manner. In addition, we also introduce three mechanisms to better guide the modeling of brain networks. The evaluation results on the Alzheimer's Disease Neuroimaging Initiative (ADNI) database demonstrate the effectiveness of the proposed method.
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- 2022
183. Customized Relationship Graph Neural Network for Brain Disorder Identification
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Xia, Zhengwang, Wang, Huan, Zhou, Tao, Jiao, Zhuqing, Lu, Jianfeng, Goos, Gerhard, Series Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Linguraru, Marius George, editor, Dou, Qi, editor, Feragen, Aasa, editor, Giannarou, Stamatia, editor, Glocker, Ben, editor, Lekadir, Karim, editor, and Schnabel, Julia A., editor
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- 2024
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184. TextPolyp: Point-Supervised Polyp Segmentation with Text Cues
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Zhao, Yiming, Zhou, Yi, Zhang, Yizhe, Wu, Ye, Zhou, Tao, Goos, Gerhard, Series Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Linguraru, Marius George, editor, Dou, Qi, editor, Feragen, Aasa, editor, Giannarou, Stamatia, editor, Glocker, Ben, editor, Lekadir, Karim, editor, and Schnabel, Julia A., editor
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- 2024
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185. Did Gerrit’s Respectful Code Review Reminders Reduce Comment Toxicity?
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Murphy-Hill, Emerson, Dicker, Jill, Carlson, Delphine, Harbach, Marian, Murillo, Ambar, Zhou, Tao, Damian, Daniela, editor, Blincoe, Kelly, editor, Ford, Denae, editor, Serebrenik, Alexander, editor, and Masood, Zainab, editor
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- 2024
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186. Design and Construction of the Interlocking Steel Pipe Pile Cofferdam for the Main Pier of the Shuidu Second Bridge located in Danjiangkou City
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Tian, Qing, Zhou, Tao, Li, Dengwu, Ge, Hao, Zheng, Zheng, Editor-in-Chief, Xi, Zhiyu, Associate Editor, Gong, Siqian, Series Editor, Hong, Wei-Chiang, Series Editor, Mellal, Mohamed Arezki, Series Editor, Narayanan, Ramadas, Series Editor, Nguyen, Quang Ngoc, Series Editor, Ong, Hwai Chyuan, Series Editor, Sun, Zaicheng, Series Editor, Ullah, Sharif, Series Editor, Wu, Junwei, Series Editor, Zhang, Baochang, Series Editor, Zhang, Wei, Series Editor, Zhu, Quanxin, Series Editor, Zheng, Wei, Series Editor, Xiang, Ping, editor, Yang, Haifeng, editor, Yan, Jianwei, editor, and Ding, Faxing, editor
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- 2024
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187. Fabricate and Test of Superconducting Dipole Magnet for FRIB
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Zhou, Tao, Li, Chao, Liu, Wei, Chen, Chuan, Gao, Wei, Li, Fengtai, Zhang, Tao, Angrisani, Leopoldo, Series Editor, Arteaga, Marco, Series Editor, Chakraborty, Samarjit, Series Editor, Chen, Jiming, Series Editor, Chen, Shanben, Series Editor, Chen, Tan Kay, Series Editor, Dillmann, Rüdiger, Series Editor, Duan, Haibin, Series Editor, Ferrari, Gianluigi, Series Editor, Ferre, Manuel, Series Editor, Jabbari, Faryar, Series Editor, Jia, Limin, Series Editor, Kacprzyk, Janusz, Series Editor, Khamis, Alaa, Series Editor, Kroeger, Torsten, Series Editor, Li, Yong, Series Editor, Liang, Qilian, Series Editor, Martín, Ferran, Series Editor, Ming, Tan Cher, Series Editor, Minker, Wolfgang, Series Editor, Misra, Pradeep, Series Editor, Mukhopadhyay, Subhas, Series Editor, Ning, Cun-Zheng, Series Editor, Nishida, Toyoaki, Series Editor, Oneto, Luca, Series Editor, Panigrahi, Bijaya Ketan, Series Editor, Pascucci, Federica, Series Editor, Qin, Yong, Series Editor, Seng, Gan Woon, Series Editor, Speidel, Joachim, Series Editor, Veiga, Germano, Series Editor, Wu, Haitao, Series Editor, Zamboni, Walter, Series Editor, Tan, Kay Chen, Series Editor, Cai, Chunwei, editor, Qu, Xiaohui, editor, Mai, Ruikun, editor, Zhang, Pengcheng, editor, Chai, Wenping, editor, and Wu, Shuai, editor
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- 2024
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188. CFDM-IME: A Collaborative Fault Diagnosis Method for Intelligent Manufacturing Equipment
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Wang, Yue, Zhou, Tao, Zhao, Xiaohu, Hu, Xiaofei, Goos, Gerhard, Founding Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Tari, Zahir, editor, Li, Keqiu, editor, and Wu, Hongyi, editor
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- 2024
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189. Specific and high-affinity adsorption of volatile organic compounds on titanium dioxide surface.
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Liu, Xinyi, Zhou, Tao, Sheng, Xinyue, Li, Hui, and Liu, Wei-Tao
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The interaction between metal oxides and volatile organic compounds (VOCs) from the ambient atmosphere plays an important role in environmental and catalytic applications. Previous scanning probe microscopy and x-ray spectroscopy studies revealed surprisingly that the TiO2 [rutile (110)] surface selectively adsorbed atmospheric carboxylic acids, which typically exist in only parts-per-billion concentrations. In this work, we used in situ sum-frequency vibrational spectroscopy to study the interaction between rutile (110) and typical VOC molecules, including formic acid, acetic acid, and formaldehyde. Spectra from all three adsorbed molecules on rutile (110) were similar to the rutile surface spectrum in the ambient atmosphere, showing a broad resonance near 2950 cm−1 that can be attributed to the bridging bidentate adsorption of corresponding compounds. In contrast, on a fused silica surface, a molecular monodentate adsorption configuration was observed for all the molecules, with aliphatic carbons appearing to be the dominant adventitious species. [ABSTRACT FROM AUTHOR]
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- 2024
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190. Identifying discreditable firms in a large-scale ownership network
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Zhou, Tao, Lee, Yan-Li, Li, Qian, Chen, Duanbing, Xie, Wenbo, Wu, Tong, and Zeng, Tu
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Computer Science - Computers and Society - Abstract
Violations of laws and regulations about food safety, production safety, quality standard and environmental protection, or negative consequences from loan, guarantee and pledge contracts, may result in operating and credit risks of firms. The above illegal or trust-breaking activities are collectively called discreditable activities, and firms with discreditable activities are named as discreditable firms. Identification of discreditable firms is of great significance for investment attraction, bank lending, equity investment, supplier selection, job seeking, and so on. In this paper, we collect registration records of about 113 million Chinese firms and construct an ownership network with about 6 million nodes, where each node is a firm who has invested at least one firm or has been invested by at least one firm. Analysis of publicly available records of discreditable activities show strong network effect, namely the probability of a firm to be discreditable is remarkably higher than the average probability given the fact that one of its investors or investees is discreditable. In comparison, for the risk of being a discreditable firm, an investee has higher impact than an investor in average. The impact of a firm on surrounding firms decays along with the increasing topological distance, analogous to the well-known "three degrees of separation" phenomenon. The uncovered correlation of discreditable activities can be considered as a representative example of network effect, in addition to the propagation of diseases, opinions and human behaviors. Lastly, we show that the utilization of the network effect largely improves the accuracy of the algorithm to identify discreditable firms., Comment: 11 pages, 4 figures
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- 2022
191. Higher order topological state induced by $d$-wave competing orders in high-T$_c$ superconductor based heterostructure
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Wang, Xiaoming, Li, Yu-Xuan, and Zhou, Tao
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Condensed Matter - Superconductivity ,Condensed Matter - Strongly Correlated Electrons - Abstract
We introduce a two-dimensional Chern insulator in proximity to a $d$-wave pseudogap state of the high-T$_c$ superconducting material as an effective platform to realize the higher order topological system. The proximity-induced $d$-density-wave (DDW) order in the Chern insulator layer serves as an effective mass. The edge states will be fully gapped by this DDW order. In the real space, the sign of the DDW order parameter changes at the system corners due to the $d$-wave factor, leading to the gapless corner states, indicating that this system may be in a higher order topological state. The higher order topology in this coupled system is confirmed based on the calculation of the edge polarization and the quadrupole moment. In the superconducting state where the superconducting order and the DDW order coexist, the Majorana corner states emerge., Comment: 10 pages, 6 figures, including the supplemental material
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- 2022
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192. SOLAR: A Highly Optimized Data Loading Framework for Distributed Training of CNN-based Scientific Surrogates
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Sun, Baixi, Yu, Xiaodong, Zhang, Chengming, Tian, Jiannan, Jin, Sian, Iskra, Kamil, Zhou, Tao, Bicer, Tekin, Beckman, Pete, and Tao, Dingwen
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Computer Science - Distributed, Parallel, and Cluster Computing ,Computer Science - Machine Learning - Abstract
CNN-based surrogates have become prevalent in scientific applications to replace conventional time-consuming physical approaches. Although these surrogates can yield satisfactory results with significantly lower computation costs over small training datasets, our benchmarking results show that data-loading overhead becomes the major performance bottleneck when training surrogates with large datasets. In practice, surrogates are usually trained with high-resolution scientific data, which can easily reach the terabyte scale. Several state-of-the-art data loaders are proposed to improve the loading throughput in general CNN training; however, they are sub-optimal when applied to the surrogate training. In this work, we propose SOLAR, a surrogate data loader, that can ultimately increase loading throughput during the training. It leverages our three key observations during the benchmarking and contains three novel designs. Specifically, SOLAR first generates a pre-determined shuffled index list and accordingly optimizes the global access order and the buffer eviction scheme to maximize the data reuse and the buffer hit rate. It then proposes a tradeoff between lightweight computational imbalance and heavyweight loading workload imbalance to speed up the overall training. It finally optimizes its data access pattern with HDF5 to achieve a better parallel I/O throughput. Our evaluation with three scientific surrogates and 32 GPUs illustrates that SOLAR can achieve up to 24.4X speedup over PyTorch Data Loader and 3.52X speedup over state-of-the-art data loaders., Comment: 14 pages, 15 figures, 5 tables, submitted to VLDB '23
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- 2022
193. Adaptive deep density approximation for fractional Fokker-Planck equations
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Zeng, Li, Wan, Xiaoliang, and Zhou, Tao
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Computer Science - Machine Learning ,Mathematics - Numerical Analysis - Abstract
In this work, we propose adaptive deep learning approaches based on normalizing flows for solving fractional Fokker-Planck equations (FPEs). The solution of a FPE is a probability density function (PDF). Traditional mesh-based methods are ineffective because of the unbounded computation domain, a large number of dimensions and the nonlocal fractional operator. To this end, we represent the solution with an explicit PDF model induced by a flow-based deep generative model, simplified KRnet, which constructs a transport map from a simple distribution to the target distribution. We consider two methods to approximate the fractional Laplacian. One method is the Monte Carlo approximation. The other method is to construct an auxiliary model with Gaussian radial basis functions (GRBFs) to approximate the solution such that we may take advantage of the fact that the fractional Laplacian of a Gaussian is known analytically. Based on these two different ways for the approximation of the fractional Laplacian, we propose two models, MCNF and GRBFNF, to approximate stationary FPEs and MCTNF to approximate time-dependent FPEs. To further improve the accuracy, we refine the training set and the approximate solution alternately. A variety of numerical examples is presented to demonstrate the effectiveness of our adaptive deep density approaches., Comment: 25 pages, 22 figures
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- 2022
194. Quantum steering in a star network
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Jiang, Guangming, Wu, Xiaohua, and Zhou, Tao
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Quantum Physics - Abstract
In this work, we will consider the star network scenario where the central party is trusted while all the edge parties (with a number of $n$) are untrusted. Network steering is defined with an $n$ local hidden state model which can be viewed as a special kind of $n$ local hidden variable model. Two different types of sufficient criteria, nonlinear steering inequality and linear steering inequality will be constructed to verify the quantum steering in a star network. Based on the linear steering inequality, how to detect the network steering with a fixed measurement will be discussed., Comment: 7 pages, 1 figure, comments welcome
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- 2022
195. Failure-informed adaptive sampling for PINNs
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Gao, Zhiwei, Yan, Liang, and Zhou, Tao
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Mathematics - Numerical Analysis ,Statistics - Machine Learning - Abstract
Physics-informed neural networks (PINNs) have emerged as an effective technique for solving PDEs in a wide range of domains. It is noticed, however, the performance of PINNs can vary dramatically with different sampling procedures. For instance, a fixed set of (prior chosen) training points may fail to capture the effective solution region (especially for problems with singularities). To overcome this issue, we present in this work an adaptive strategy, termed the failure-informed PINNs (FI-PINNs), which is inspired by the viewpoint of reliability analysis. The key idea is to define an effective failure probability based on the residual, and then, with the aim of placing more samples in the failure region, the FI-PINNs employs a failure-informed enrichment technique to adaptively add new collocation points to the training set, such that the numerical accuracy is dramatically improved. In short, similar as adaptive finite element methods, the proposed FI-PINNs adopts the failure probability as the posterior error indicator to generate new training points. We prove rigorous error bounds of FI-PINNs and illustrate its performance through several problems.
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- 2022
196. Prompt-driven efficient Open-set Semi-supervised Learning
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Li, Haoran, Feng, Chun-Mei, Zhou, Tao, Xu, Yong, and Chang, Xiaojun
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Computer Science - Computer Vision and Pattern Recognition - Abstract
Open-set semi-supervised learning (OSSL) has attracted growing interest, which investigates a more practical scenario where out-of-distribution (OOD) samples are only contained in unlabeled data. Existing OSSL methods like OpenMatch learn an OOD detector to identify outliers, which often update all modal parameters (i.e., full fine-tuning) to propagate class information from labeled data to unlabeled ones. Currently, prompt learning has been developed to bridge gaps between pre-training and fine-tuning, which shows higher computational efficiency in several downstream tasks. In this paper, we propose a prompt-driven efficient OSSL framework, called OpenPrompt, which can propagate class information from labeled to unlabeled data with only a small number of trainable parameters. We propose a prompt-driven joint space learning mechanism to detect OOD data by maximizing the distribution gap between ID and OOD samples in unlabeled data, thereby our method enables the outliers to be detected in a new way. The experimental results on three public datasets show that OpenPrompt outperforms state-of-the-art methods with less than 1% of trainable parameters. More importantly, OpenPrompt achieves a 4% improvement in terms of AUROC on outlier detection over a fully supervised model on CIFAR10.
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- 2022
197. Myopia prediction for adolescents via time-aware deep learning
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Huang, Junjia, Ma, Wei, Li, Rong, Zhao, Na, and Zhou, Tao
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Computer Science - Machine Learning ,Computer Science - Artificial Intelligence - Abstract
Background: Quantitative prediction of the adolescents' spherical equivalent based on their variable-length historical vision records. Methods: From October 2019 to March 2022, we examined binocular uncorrected visual acuity, axial length, corneal curvature, and axial of 75,172 eyes from 37,586 adolescents aged 6-20 years in Chengdu, China. 80\% samples consist of the training set and the remaining 20\% form the testing set. Time-Aware Long Short-Term Memory was used to quantitatively predict the adolescents' spherical equivalent within two and a half years. Result: The mean absolute prediction error on the testing set was 0.273-0.257 for spherical equivalent, ranging from 0.189-0.160 to 0.596-0.473 if we consider different lengths of historical records and different prediction durations. Conclusions: Time-Aware Long Short-Term Memory was applied to captured the temporal features in irregularly sampled time series, which is more in line with the characteristics of real data and thus has higher applicability, and helps to identify the progression of myopia earlier. The overall error 0.273 is much smaller than the criterion for clinically acceptable prediction, say 0.75., Comment: 9 pages, 3 figures, 3 tables
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- 2022
198. Deep learning at the edge enables real-time streaming ptychographic imaging
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Babu, Anakha V, Zhou, Tao, Kandel, Saugat, Bicer, Tekin, Liu, Zhengchun, Judge, William, Ching, Daniel J., Jiang, Yi, Veseli, Sinisa, Henke, Steven, Chard, Ryan, Yao, Yudong, Sirazitdinova, Ekaterina, Gupta, Geetika, Holt, Martin V., Foster, Ian T., Miceli, Antonino, and Cherukara, Mathew J.
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Computer Science - Machine Learning ,Electrical Engineering and Systems Science - Image and Video Processing - Abstract
Coherent microscopy techniques provide an unparalleled multi-scale view of materials across scientific and technological fields, from structural materials to quantum devices, from integrated circuits to biological cells. Driven by the construction of brighter sources and high-rate detectors, coherent X-ray microscopy methods like ptychography are poised to revolutionize nanoscale materials characterization. However, associated significant increases in data and compute needs mean that conventional approaches no longer suffice for recovering sample images in real-time from high-speed coherent imaging experiments. Here, we demonstrate a workflow that leverages artificial intelligence at the edge and high-performance computing to enable real-time inversion on X-ray ptychography data streamed directly from a detector at up to 2 kHz. The proposed AI-enabled workflow eliminates the sampling constraints imposed by traditional ptychography, allowing low dose imaging using orders of magnitude less data than required by traditional methods.
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- 2022
199. The History of Controlling and Treating Infectious Diseases in Ancient China
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Liu, Cui-ling, Zhou, Tao, Cheng, Liang-bin, Fisher, David, Pronyuk, Khrystyna, Musabaev, Erkin, Dang, Yi-ping, and Zhao, Lei
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- 2024
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200. Positive definiteness of real quadratic forms resulting from the variable-step L1-type approximations of convolution operators
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Liao, Hong-Lin, Tang, Tao, and Zhou, Tao
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- 2024
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