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Background: Keystone taxa are drivers of microbiome structure and functioning, which may play critical roles in microbiome-level responses to recalcitrant pollution and are a key to bioremediation. However, the characterization and manipulation of such taxa is a major challenge due to the complexity of microbial communities and rapid turnover in both time and space. Here, microcosms were set up with benzo[a]-pyrene (BaP) and/or nitrate based on C-rich, S-rich, and N-limited mangrove sediments as reductive experimental models to trigger and track the turnover of keystone taxa to address this challenge. Results: Based on microbial co-occurrence network analysis, two keystone taxa, Sulfurovum and Sulfurimonas, were found to exhibit significant role transitions in different microcosms, where these two taxa played nonkeystone roles with neutral relationships in in situ mangrove sediments. However, Sulfurimonas transitioned to be keystone taxa in nitrate-replenished microcosms and formed a keystone guild with Thioalkalispira. Sulfurovum stood out in BaP-added microcosms and mutualized in a densely polycyclic aromatic hydrocarbon (PAH)-degrader-centric keystone guild with Novosphingobium and Robiginitalea, where 63.25% of added BaP was removed. Under the occurrence of nitrate and BaP, they simultaneously played roles as keystone taxa in their respective guilds but exhibited significant competition. Comparative genomics and metagenome-assembled genome (MAG) analysis was then performed to reveal the metabolic potential of those keystone taxa and to empirically deduce their functional role in keystone guilds. Sulfurimonas possesses a better sense system and motility, indicative of its aggressive role in nitrate acquisition and conversion; Sulfurovum exhibited a better ability for oxidation resistance and transporting nutrients and electrons. High-efficiency thermal asymmetric interlaced polymerase reaction (hiTAIL-PCR) and enhanced green fluorescent protein (eGFP)-labeling approaches were employed to capture and label the BaP key degrader to further experimentally verify the roles of keystone taxa Sulfurovum in the keystone guilds. Observations of the enhancement in reactive oxygen species (ROS) removal, cell growth, and degradation efficiency by co-culture of isolated keystone taxa strains experimentally demonstrated that Sulfurovum contributes to the BaP degradative microbiome against BaP toxicity. Conclusions: Our findings suggest that the combined use of co-occurrence network analysis, comparative genomics, and co-culture of captured keystone taxa (3C-strategy) in microbial communities whose structure is strongly shaped by changing environmental factors can characterize keystone taxa roles in keystone guilds and may provide targets for manipulation to improve the function of the microbiome. ASAPan1EjtyKyjuW1wnGQ3 Video Abstract [ABSTRACT FROM AUTHOR]

The Santa Barbara Basin naturally experiences transient deoxygenation due to its unique geological setting in the Southern California Borderland and seasonal changes in ocean currents. Long-term measurements of the basin showed that anoxic events and subsequent nitrate exhaustion in the bottom waters have been occurring more frequently and lasting longer over the past decade. One characteristic of the Santa Barbara Basin is the seasonal development of extensive mats of benthic nitrate-reducing sulfur-oxidizing bacteria, which are found at the sediment-water interface when the basin's bottom waters reach anoxia but still provide some nitrate. To assess the mat's impact on the benthic and pelagic redox environment, we collected biogeochemical sediment and benthic flux data in November 2019, after anoxia developed in the deepest waters of the basin and dissolved nitrate was depleted (down to 9.9 µM). We found that the presence of mats was associated with a shift from denitrification to dissimilatory nitrate reduction to ammonium. The zone of sulfate reduction appeared near the sediment-water interface in sediment hosting these ephemeral white mats, but that alone seems insufficient to spur their growth. We found that a high sediment TOC content (>5 %) and an exhaustion of iron oxides in the surface sediment were additional prerequisites for mat proliferation. Our research further suggests that cycles of deoxygenation and reoxygenation of the benthic environment result in extremely high benthic fluxes of dissolved iron from the basin's sediment. This work expands our understanding of nitrate-reducing sulfur-oxidizing mats and their role in sustaining and potentially expanding marine anoxia. [ABSTRACT FROM AUTHOR]

The purpose of this study was to explore the stimulation mechanism of low pulsed electric field (PEF) strength treatment to promote the growth metabolism of aerobic denitrifying bacteria Pseudomonas putida W207-14. The results indicated that compared with the control group, the strain W207-14 treated with PEF entered the logarithmic growth phase 5 h earlier, the growth time to reached the maximum cell optical density at 600 nm (OD600) of 1.935 ± 0.04 was only 24 h, which shortened by half. With the reduction of growth time, the metabolic rate of the strain increased significantly, in which the removal efficiency of COD, NO3−–N and TN was 97.67 ± 1.12%, 90.34 ± 0.73% and 90.13 ± 0.10% in 24 h, respectively. The maximum nitrate removal rate increased from 3.49 mg/L/h to 7.53 mg/L/h. A large number of cells with simultaneous cell membrane damage and high physiological activity were observed by flow cytometry (FCM) in combination with fluorescence staining analysis, which confirmed the reversible electroporation on the cell membrane of strain W207-14 treated with PEF. Transcriptomic analysis indicated that PEF activated the highly significant differential expression of membrane porin (opdB, opdC, and oprB) and cytochrome oxidoreductase related genes (ccoP, ccoN, cioA and cioB) on the cell membrane, which promoted the transport of nutrients through the cell membrane and electron transfer during aerobic respiration and provided an explanation for the possible mechanism of PEF promoting the growth metabolism of strain W207-14 at the micro level. These results lay a foundation for the practical application of PEF enhanced aerobic denitrification technology. [ABSTRACT FROM AUTHOR]

In response to the deformation resistance deficiency and poor toughness characteristics of soil after microbial curing, a combination of fibre reinforcement technology and microbial curing technology was used to conduct microbial curing tests using basalt fibres and denitrifying bacteria. In this paper, the effects of fibre on the strength and toughness of soil consolidation were analysed by unconfined compressive strength test and direct shear test, and the stability of reinforced slope was analysed by numerical simulation. The results show the following. (1) Basalt fibre can effectively improve the characteristics of brittle damage of microbially consolidated soil while increasing the compressive and shear strength. (2) Fibre dosing and fibre length have important effects on the mechanical properties of microbially consolidated soil. (3) The appropriate amount of basalt fibre can promote the generation of calcium carbonate. (4) The plastic strain area of the slope decreases after microbial reinforcement and the maximum equivalent plastic stress decreases by 65 kPa. [ABSTRACT FROM AUTHOR]

Quinol-dependent nitric oxide reductases (qNORs) are considered members of the respiratory heme-copper oxidase superfamily, are unique to bacteria, and are commonly found in pathogenic bacteria where they play a role in combating the host immune response. qNORs are also essential enzymes in the denitrification pathway, catalysing the reduction of nitric oxide to nitrous oxide. Here, we determine a 2.2 Å cryoEM structure of qNOR from Alcaligenes xylosoxidans, an opportunistic pathogen and a denitrifying bacterium of importance in the nitrogen cycle. This high-resolution structure provides insight into electron, substrate, and proton pathways, and provides evidence that the quinol binding site not only contains the conserved His and Asp residues but also possesses a critical Arg (Arg720) observed in cytochrome bo3, a respiratory quinol oxidase. Quinol-dependent nitric oxide reductases, unique to bacteria, are considered members of respiratory heme copper oxidases. A 2.2 Å cryoEM structure of qNOR is reported shedding light on key aspects of enzyme mechanism including quinol binding and pathways for electron, substrate, and proton transport. [ABSTRACT FROM AUTHOR]

Background: Recently, it has been found that nitrogen (N) deposition strongly affects the coverage of biocrusts. However, we know little about the response of exopolysaccharides (EPSs), the key cementing material in the formation and stability of biocrusts, to N deposition. Method: Three N-sources including nitrate, ammonia and urea were added to biocrusts at three rates (2 mg/g, 4 mg/g, 8 mg/g) to evaluate the effect of N additions on the growth of biocrusts and the abundance of EPS. Results: Our results showed 2 mg/g of nitrate–N had no obvious effect on the cyanobacterial biomass, while 4 and 8 mg/g of nitrate–N inhibited the growth of Microcoleus vaginatus, the dominant cyanobacterium in biocrusts, but promoted other cyanobacteria growth. Ammonia-N and urea-N strongly decreased the cyanobacterial biomass, indicated by chlorophyll-a and 16 s rRNA gene copy-numbers. On the whole, N additions had a positive impact on the α-biodiversity of biocrusts. However, Ammonia-N and urea-N shifted the bacterial communities from more Cyanobacteria to more Proteobacteria and Actinobacteria. Notably, lesser-N (2 mg/g) promoted the excretion of EPSs, while greater-N (8 mg/g) had the opposite effect, and the total proportion of rhamnose and fucose in EPSs decreased in all treatment groups. Conclusion: N additions (except 2 mg/g of nitrate–N) reduced cyanobacterial biomass and affected the bacterial communities in biocrusts, which would obstruct the development and succession of biocrusts. Meanwhile, the simultaneous reductions of the EPSs contents and proportion of rhamnose and fucose in EPSs may further reduce stability and persistence of cyanobacterial biocrusts, after N additions. [ABSTRACT FROM AUTHOR]

With the acceleration of urbanization and the continuous increase of urban population, more and more municipal sludge is produced. So it is extremely urgent to deal with municipal sludge. The contents of organic matter, ammonia nitrogen, total nitrogen, total phosphorus and unstable heavy metals in municipal sludge are reduced by adding different amounts of denitrifying bacteria. The optimum amount of denitrifying bacteria is determined to be 15 g/m³ according to the experimental results. From the single variable experiment, it is concluded that the denitrification is most favorable when the temperature is 25 ℃ and the pH of overlying water is 6.5. After comparison between single carbon source with composite carbon source, the removal rate of organic matter by adding composite carbon source is 14.1% higher than that by single carbon source. Finally, composite carbon source is selected as the carbon source of denitrifying bacteria. The sludge treated by microorganism in advance is added with quicklime for decontamination and dewatering, and cement is used as solidification material. Through the orthogonal test, the final ratio of solidified soil is 25%（sludge/dry soil）, 13% water and 8% cement, and its unconfined compressive strength in 28 days is 550.17 kPa. The treated sludge solidified soil is determined to meet the discharge standard of heavy metals after acid rain leaching, and can be used as geotechnical materials. [ABSTRACT FROM AUTHOR]

Nitrite oxidizing bacteria (NOB) is easy to accumulate in the mainstream anammox process, leading to the decrease of anammox bacterial abundance and deterioration of nitrogen removal. In this study, anammox bacteria was gradually enriched by increasing nitrite production rate under intermittent aeration despite high NOB abundance. With the DO increased from 0.4 to 0.6 mg/L, Nitrosomonas increased from 0.14% to 0.22%, providing more nitrite for anammox bacteria and promoting its enrichment (grew by 77.4%). Adding extra nitrite of 7.14 mg N/(L·h) during the aeration phase to reactor could further increase anammox bacterial abundance by 117.6%, which was higher than the control reactor (40.2%). In contrast, NOB abundance decreased from 1.4 × 1010 to 1.2 × 1010 copies/L. The results suggested that anammox bacteria had a competitive advantage for nitrite over NOB with increasing nitrite production rate. In addition, Thauera and Dechloromonas, which were responsible for reducing nitrate to nitrite, provided additional substrates for anammox bacteria. Overall, this research provides a new idea for mainstream anammox applications. Practitioner Points: Inhibiting NOB might be no longer necessary and difficult for mainstream anammox.Anammox bacteria competed for more nitrite with NOB when nitrite production rate increased.Increasing DO from 0.4 to 0.6 mg/L facilitated anammox bacterial growth and nitrogen removal. [ABSTRACT FROM AUTHOR]

The Kimoto -style fermentation starter is a traditional preparation method of sake brewing. In this process, specific microbial transition patterns have been observed within nitrate-reducing bacteria and lactic acid bacteria during the production process of the fermentation starter. We have characterized phylogenetic compositions and diversity of the bacterial community in a sake brewery performing the Kimoto -style fermentation. Comparing the time-series changes with other sake breweries previously reported, we found a novel type of Kimoto -style fermentation in which the microbial transition differed significantly from other breweries during the fermentation step. Specifically, the lactic acid bacteria, Leuconostoc spp. was a predominant species in the late stage in the preparation process of fermentation starter, on the other hand, Lactobacillus spp., which plays a pivotal role in other breweries, was not detected in this analysis. The discovery of this new variation of microbiome transition in Kimoto -style fermentation has further deepened our understanding of the diversity of sake brewing. [ABSTRACT FROM AUTHOR]

Algal cell proliferation has posed significant problems for traditional water treatment facilities; these problems are attributed to surface hydrophilicity and electrostatic repulsion. Biological aerated filters (BAFs) have been extensively used in wastewater treatment to remove pollutants such as algal cells by utilizing the adsorption and separation capabilities of the filter media. In this study, a BAF was supplemented with biological filter medium (Marchantia polymorpha) to assess its effectiveness of pretreating aquaculture wastewater. In terms of process performance, steady and consistent treatment was achieved by the BAF with M. polymorpha (BAF2) under an algal cell density as high as 1.65 × 108 cell/L, with average removal rates for NH4+-N and algae cells of 74.4% and 81.9%, respectively. The photosynthetic activity parameters (rETRmax, α, Fv/Fm, and Ik) of the influent and effluent were quantitatively assessed, and M. polymorpha was found to remove algae by disrupting the photosynthetic system of the algal cells. Furthermore, the addition of the M. polymorpha filter medium enhanced the community structure of the functional microbes in the BAF system. The highest microbial community richness and diversity were observed in the BAF2. Meanwhile, M. polymorpha promoted an increase in the abundance of denitrifying bacteria, including Bdellovibrio and Pseudomonas. Overall, this work offers a unique perspective on the aquaculture wastewater pretreatment process and BAF design. [ABSTRACT FROM AUTHOR]

Biological denitrification is an efficient and low-cost method to treat wastewater, and it has been shown that growth promoters can regulate the metabolism of microorganisms. This study aimed to investigate the effects of gibberellic acid, naphthalene acetic acid, compound sodium nitrophenolate, and diethyl aminoethyl hexanoate on the growth and denitrification process of denitrifying microorganisms and to examine the associated mechanisms. All four tested growth promoters did not affect the growth of the strain Q1; further, compound sodium nitrophenolate could significantly improve the bacterial denitrification efficiency and showed an increase in the removal rate of 13.08% in 72 h. The addition of 15 mg/L compound sodium nitrophenolate increased the removal rate of strain Q1 by 25.88% at 72 h, significantly improving the efficiency of reducing the chemical oxygen demand of the effluent. Transcriptome analysis identified 1664 differentially expressed genes (573 upregulated and 1091 downregulated genes) in the strain Q1 treated with compound sodium nitrophenolate. Nitrate reductase and nitrate transporter, which are two key enzymes related to the nitrate reduction pathway, were found to be upregulated during the denitrification process. Compound sodium nitrophenolate has promising applications in high-salt and high-nitrogen wastewater treatment. [ABSTRACT FROM AUTHOR]

Given increasingly prominent environmental issues, there is a pressing need to satisfy more stringent emission standards for wastewater treatment plants (WWTP) while concurrently prioritizing energy conservation; a new up-flow layered nitrogen removal filter was constructed on a laboratory scale using gravel (for the bottom and top layers) and embedded bio-organic carriers (for the middle layer) containing microorganisms as fillers to treat the secondary effluent by introducing a portion of raw water. This study investigated the nitrogen removal effectiveness and transfer pathways of synthetic wastewater at varying mixing ratios, promoted the enrichment of Anammox Bacteria (AnAOB) by embedding microorganisms, and analyzed the microbial community structure using high-throughput sequencing techniques. The findings showed that the highest total nitrogen (TN) removal efficiency was achieved with chemical oxygen demand (COD), ammonia (NH4+-N), and nitrate (NO3−-N) contents in the mixture at 77, 10, and 8 mg·L−1, respectively, with an average efficiency of 89.42%. NO3−-N was mostly removed through denitrification (heterotrophic), while NH4+-N was eliminated by partial nitrification (PN) and anaerobic ammonium oxidation (Anammox, autotrophic). According to high-throughput sequencing results, denitrifying bacteria such as Thauera (1.30–6.96%), Flavobacterium (0.18–0.40%), and Parcubacteria (0.14–0.32%) were present in all the filter layers, and Anammox bacteria such as Candidatus_Kuenenia were predominant in the middle layer at a 0.88% abundance, with the aid of organic carriers. [ABSTRACT FROM AUTHOR]

Selenium is an essential micro-nutrient for living organisms, but elevated concentrations of it in water can adversely affect health. Nitrate is often found in selenium-contaminated water and negatively correlates with selenium removal. In this study, we investigate the effect of nitrate co-existence on selenium bioremediation in chemically modified zeolite columns. Dynamic sorption-reduction experiments were conducted using natural and iron-coated zeolite columns to remove selenite and selenate oxyanions separately, with and without nitrate anions. Anaerobic sludge was included as microbial inoculum, while lactate was the sole electron donor. The initial selenium concentration (SeIV or SeVI) was 790 µg/L, the nitrate concentration was 620 mg/L, the pH was 7.5, and the flow rate was 3 mL/min. Before introducing nitrate ions, selenium reduction in all four columns reached approximately 99%. However, after introducing nitrate ions, selenate and selenite reduction efficiencies were reduced to approximately 93% and 60%, respectively. Biofilm microbial community composition, assessed by 16S rRNA sequencing, was distinct between the communities with and without nitrate anions. Specifically, in the absence of nitrate, biofilm communities are mainly composed of selenium-reducing bacteria (Veillonella, Bacteroides and Escherichia). In contrast, the presence of nitrate led to mostly denitrifying bacteria (Anaeromusa-Anaeroarcus, Lentimicrobium, Azospirillum and Endomicrobium). Further, comparison of diversity indices (Shannon index, Faith PD and Pielou's) shows alteration in all indices in the presence of nitrate. [ABSTRACT FROM AUTHOR]

In this study, aluminum-based P-inactivation agent (Al-PIA) was used as a high-efficiency microbial carrier, and the biological Al-PIA (BA-PIA) was prepared by artificial aeration. Laboratory static experiments were conducted to study the effect of BA-PIA on reducing nitrogen and phosphorus contents in water. Physicochemical characterization and isotope tracing method were applied to analyze the removal mechanism of nitrogen and phosphorus. High-throughput techniques were used to analyze the characteristic bacterial genus in the BA-PIA system. The nitrogen and phosphorus removal experiment was conducted for 30 days, and the removal rates of NH 4 +-N, TN and TP by BA-PIA were 81.87%, 66.08% and 87.97%, respectively. The nitrogen removal pathways of BA-PIA were as follows: the nitrification reaction accounted for 59.0% (of which denitrification reaction accounted for 56.4%), microbial assimilation accounted for 18.1%, and the unreacted part accounted for 22.9%. The characteristic bacteria in the BA-PIA system were Streptomyces, Nocardioides, Saccharopolyspora, Nitrosomonas , and Marinobacter. The loading of microorganisms only changed the surface physical properties of Al-PIA (such as specific surface area, pore volume and pore size), without changing its surface chemical properties. The removal mechanism of nitrogen by BA-PIA is the conversion of NH 4 +-N into NO 2 −-N and NO 3 −-N by nitrifying bacteria, which are then reduced to nitrogen-containing gas by aerobic denitrifying bacteria. The phosphorus removal mechanism is that metal compounds (such as Al) on the surface of BA-PIA fix phosphorus through chemisorption processes, such as ligand exchange. Therefore, BA-PIA overcomes the deficiency of Al-PIA with only phosphorus removal ability, and has better application prospects. [ABSTRACT FROM AUTHOR]

With the rapid expansion of livestock production, the amount of livestock wastewater accumulated rapidly. Lack of biodegradable organic matter makes denitrification of livestock wastewater after anaerobic digestion more difficult. In this study, Myriophyllum aquaticum constructed wetlands (CWs) with efficient nitrogen removal performance were established under different carbon/nitrogen (C/N) ratios. Analysis of community composition reveals the change of M. aquaticum CWs in microbial community structure with C/N ratios. The proportion of Proteobacteria which is one of the dominant phyla among denitrifier communities increased significantly under low C/N ratio conditions. Besides, to obtain cultivable denitrifier that could be added into CWs in situ, 33 strains belonging to phylum Proteobacteria were isolated from efficient M. aquaticum CWs, while the best-performing denitrification strain M3-1 was identified as Bacillus velezensis JT3-1 (GenBank No. CP032506.1). Redundancy analysis and quadratic models showed that C/N ratio had significant effects on disposal of nitrate (NO 3 −-N) and the strains isolated could perform well in denitrification when C/N ratio is relatively low. In addition, they have relatively wide ranges of carbon sources, temperature and a high NO 3 − removal rate of 9.12 mg/(L·hr) at elevated concentrations of 800 mg/L nitrate. Thus, strains isolated from M. aquaticum CWs with low C/N ratio have a practical application value in the treatment of nitrate-containing wastewater. These denitrifying bacteria could be added to CWs to enhance nitrogen removal efficiency of CWs for livestock wastewater with low C/N ratio in the future. [Display omitted] [ABSTRACT FROM AUTHOR]

Accelerated eutrophication is one of the most serious problems confronting freshwater systems worldwide. More effective methods to reduce nutrients from eutrophic water with high nitrogen but low carbon source are now urgently needed. In this study, the methods of floating plant remediation and aerobic denitrification were combined for seeking an effective strategy. Four aerobic denitrifying bacteria were adopted. Each strain was co-cultured with Eichhornia crassipes, and then the effects of different combinations on the removal of nitrogen and phosphorus were compared. Meanwhile, their impacts on the growth and physiological characteristics of plants were also measured. The results showed that the association of aerobic denitrifying bacteria with E. crassipes was effective in enhancing the simultaneous removal of nitrogen and phosphorus. E. crassipes helped bacteria to eliminate the accumulation of nitrites under the condition of limited carbon sources. Cooperation between Rhizobium rosettiformans and E. crassipes exhibited the best remediation performance. The four aerobic denitrifying bacteria increased the plant growth and phosphorus content, and had different effects on the plant root activity, leaf chlorophyll, leaf soluble sugar and leaf soluble protein concentration. Although the overall nutrients removal efficiency was greatly improved by the synergic association, the percentage contribution of plant uptake remained constant. [ABSTRACT FROM AUTHOR]

Circulating nitrate is actively absorbed by salivary glands and secreted into the oral cavity, where it is reduced to nitrite by oral nitrate-reducing bacteria. This process has previously been considered harmful because nitrate and nitrite can promote the formation of potentially carcinogenic N-nitrosamines. However, recent studies have shown that nitrate may have other physiological functions, and it can serve as a precursor for the systemic production of nitric oxide (NO) and perform NO-like functions, such as promoting vasodilation, regulating metabolic diseases, alleviating senescence, and protecting the digestive system. Inside the oral cavity, NO is likely to inhibit sensitive species as part of the nonspecific oral immune system. Exogenous administration of nitrate can maintain a balance in the pH of saliva. Oral nitrate-reducing bacteria can control the progression of caries by metabolizing lactic acid and reducing its accumulation, which is beneficial to the homeostasis of the oral microecology. In the current manuscript, we reviewed nitrate-reducing bacteria and their nitrate-metabolizing functions during the development of caries. Furthermore, we listed the effects of probiotics and dietary modification, which may be a promising method to prevent the occurrence of caries. We believe that this review provides novel ideas for the prevention of caries and treatment in clinical settings. [ABSTRACT FROM AUTHOR]

In this study, amino acids, proteins, and microbial communities in sludge from different wastewater treatment plants (WWTPs) were analyzed. The results showed that the bacterial communities of different sludge samples were similar at the phylum level, and the dominant bacterial species in sludge samples with the same treatment process were the consistent. The main amino acids in EPS of different layers were different, and the amino acid results of different sludge samples were quite different, but the content of hydrophilic amino acids in all samples was higher than that of hydrophobic amino acids. And the total content of glycine, serine, and threonine related to sludge dewatering was positively correlated with protein content in sludge. In addition, the content of nitrifying bacteria and denitrifying bacteria in sludge was also positively correlated with the content of hydrophilic amino acids. In this study, the correlations between proteins, amino acids, and microbial communities in sludge were analyzed respectively, and the internal relationship was found. And it provided ideas for further study of sludge dewatering characteristics in the future. [ABSTRACT FROM AUTHOR]

Research background. This study provides insight into the use of a designed microbial community to produce biohydrogen in simple, single-chamber microbial electrolysis cells (MECs). The ability of MECs to stably produce biohydrogen relies heavily on the setup and microorganisms working inside the system. Despite having the most straightforward configuration and effectively avoiding costly membranes, single-chamber MECs are prone to competing metabolic pathways. We present in this study one possible way of avoiding this problem using characteristically defined, designed microbial consortium. Here, we compare the performance of MECs inoculated with a designed consortium to MECs operating with a naturally occurring soil consortium. Experimental approach. We adapted a cost-effective and simple single-chamber MEC design. The MEC was gastight, 100 mL in volume, and equipped with continuous monitoring for electrical output using a digital multimeter. Microorganisms were sourced from Indonesian environmental samples, either as denitrifying bacterial isolates grouped as a designed consortium or natural soil microbiome used in its entirety. The designed consortium consisted of five species from the Pseudomonas and Acinetobacter genera. The headspace gas profile was monitored periodically with a gas chromatograph. At the end of the culture, the composition of the natural soil consortium was characterized by next generation sequencing and the growth of the bacteria on the surface of the anodes by field emission scanning electron microscopy. Results and conclusions. We found that MEC using a designed consortium presented a better H2 production profile, with the ability of the system to maintain headspace H2 concentration relatively stable for a long time after reaching stationary growth period. In contrast, MECs inoculated with soil microbiome exhibited a strong decline in headspace H2 profile within the same time frame. Novelty and scientific contribution. This work utilizes a designed, denitrifying bacterial consortium isolated from Indonesian environmental samples that can survive in a nitrate-rich environment. Here we propose using a designed consortium as a biological approach to avoid methanogenesis in MECs, as a simple and environmentally friendly alternative to current chemical/physical methods. Our findings offer an alternative solution to avoid the problem of H2 loss in single-chamber MECs along with optimizing biohydrogen production through bioelectrochemical routes.

Aims: Nitrogen (N) deposition, as a global environmental threat, has exhibited profound impacts on the nutrient cycling and ecosystem functioning of natural forests. However, little is known about how different N deposition levels influence the diversity, community composition, and structural complexity of the denitrifying bacteria. Methods: Here we set up a field experiment to investigate the impacts of N deposition (0, 50, 100, and 150 kg N ha−1 yr−1) on soil denitrification and underlying mechanisms in a subtropical forest. Results: The denitrifying activity was significantly decreased by the high level of N deposition compared to the control. The abundances of denitrification functional genes were commonly increased by the lower rate of N deposition, while significantly suppressed by the higher levels of N deposition. Non-metric multidimensional scaling ordinations showed that the denitrifier assemblages were evidently clustered based on N deposition levels and soil layers, regardless of sampling seasons. Structural equation modeling analysis indicated that the denitrifier abundance and community composition directly explained 62% of the total variance of denitrifying activity. Soil pH exhibited profound effects on the denitrifier abundance, diversity, and community composition. Nitrogen deposition affected the denitrifier co-occurrence networks with increased complexity under the highest level of N deposition compared to the control. Conclusions: This study emphasized the crucial role of denitrifier community composition in shaping soil denitrifying activity under N deposition, highlighting the importance of incorporating the dynamics of denitrifier communities together with soil environmental parameters into the models for accurately predicting ecosystem processes in forests. [ABSTRACT FROM AUTHOR]

Inputs of carbon to soil may be used to stimulate microbial growth and immobilize excess nitrogen from sources such as livestock urine. However, the growth responses of microbial taxa to carbon inputs under conditions of excess soil nitrogen remain poorly understood. Using DNA metabarcoding and a field-based soil lysimeter experiment, we characterised the temporal responses (up to 112 days) of bacterial and fungal communities to a simulated bovine urine event plus inputs of labile carbon (sucrose) at two concentrations. Fungal communities were impacted more strongly than bacterial communities by carbon inputs following the simulated urine event, with more variable responses among taxa. Chytridiomycota and Glomeromycota richness were most negatively affected, and Tremellomycetes richness most positively affected, by carbon inputs. A minority of fungal ASVs had greatly increased proportional abundances in response to carbon, while fungal trophic composition became highly dominated by saprotrophs by the experiment end. Bacterial taxa showed consistent trends of declining (to about 14 days) and recovering (to 112 days) richness in response to urine and carbon inputs, but carbon-related evenness and proportional abundance trends varied between taxa. Proportional abundances of Actinobacteria, Bacteroidetes, Betaproteobacteria, and Gammaproteobacteria increased in response to carbon, whereas proportional abundances of Acidobacteria, candidate division WPS-1, Planctomycetes, Deltaproteobacteria, and Verrucomicrobia decreased. These results show that labile carbon inputs to limit nitrate leaching support the recovery of bacterial communities to bovine urine events but may have long-term impacts on fungal community composition and function, with potential consequences for soil food webs, carbon sequestration, and agricultural productivity. [ABSTRACT FROM AUTHOR]

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Copyright of Journal of Isotopes is the property of Journal of Isotopes Editorial Office and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

This study presents a novel perspective on the control of eutrophication by moving aeration through a ten-month pilot field study. Moving aeration significantly reduced the relative abundance of class Cyanobacteria by 14.01%, effectively preventing cyanobacteria from predominating in the overlying water. As a result, the deposition of TOC, N, and P in the surface of the sediment decreased by 90%, 73%, and 93% in comparison to the control group. The analysis of microbial community structure based on 16S rRNA high-throughput sequencing showed that the order Bacillales and Micrococcales contributed to nitrogen removal significantly increased by 19.44% and 3.94%, respectively, while the order Steroidobacterales, Rhizobiales, and Microtrichales involved in the immobilization of carbon and nitrogen were significantly decreased by 4.03%, 2.69%, and 2.3% in the aeration group, respectively. Variation in the number of functional microorganisms based on the MPN method revealed that moving aeration promoted the growth of nitrifying bacteria and denitrifying bacteria. These findings demonstrated that moving aeration is effective in repairing eutrophic water and eliminating endogenous N pollutants. [ABSTRACT FROM AUTHOR]

This study aimed to investigate the effects of a biological nitrification inhibitor on nitrous oxide emission and rice yield quality in paddy soils and its effects on denitrifying the bacteria of nosZ, nirK, and nirS types. Two treatments were performed: (1) using a local conventional fertilizer as the control CK; (2) using the partial application of a conventional fertilizer + biological nitrification inhibitor as SW. N2O emission was measured using gas chromatography; qPCR amplification was performed using primers for the targeted functional genes, nosZ, nirS, and nirK, and denitrifying functional gene abundance and denitrifying microbial community structure were analyzed using fluorescence quantification and high–throughput sequencing, respectively. The results reveal that the biological nitrification inhibitor resulted in a 41.83% reduction in N2O, relative to the normal fertilizer treatment. Meanwhile, rice yield increased by 15.45% and related quality indexes were also improved. This can promote the reproduction of bacteria with the nosZ gene while inhibiting the growth of bacteria with nirS and nirK genes. The core bacteria, Nitrosospira, Rhodanobacter, Bradyrhizobium, Tardiphaga, Rhodopseudomonas, and Paracoccus, positively correlated with N2O emissions, while core bacteria Azospirillum, Burkholderia, and Mesorhizobium negatively correlated with N2O emissions. Therefore, the application of a biological nitrification inhibitor could be an effective measure to promote rice yield and quality, reduce N2O emissions, and affect key denitrifying bacteria. [ABSTRACT FROM AUTHOR]

This study evaluated the effectiveness of using organic carbon materials (i.e., woodchips) to remove nitrate from groundwater. The results of our flow-through column experiment, which was conducted over 1.6 years, suggested that denitrifying bacteria reduce nitrate by using it as an electron acceptor and woodchips as an electron donor. The nitrate removal rates were sufficiently high (0.39–1.04 mmol L−1 day−1) during the operation of the column. Denitrification process was supported by fractionation of nitrogen and oxygen isotopes (δ15N and δ18O), with the δ15N and δ18O values enriched from 7.4‰ and 22.3‰ to 21.2‰ and 30.4‰, respectively. Enrichment factors (ε ) for 15 N and 18O were calculated using the Rayleigh fractionation model, with values of − 13.2‰ for ε15N and − 7.1‰ for ε18O. The fractionation ratio of 15 N to 18O was 1.9:1, confirming denitrification. The most abundant bacterial genera in the soil used for inoculation were Enterobacter (86.7%), Nitrospira (1.8%), and Arthrobacter (1.5%), while those in the column effluent were Macrococcus (37.1%), Escherichia (14.7%), and Shigella (14.6%), indicating that bacterial communities changed in response to geochemical conditions in the column. This study suggests that nitrate in groundwater can be effectively removed using woodchip-based passive treatment systems and that information on isotopic fractionation and denitrifying bacteria can be key tools to understand denitrification. [ABSTRACT FROM AUTHOR]

This study is aimed at adding different types of mature compost and sulfur powder, as additives into food waste composting to investigate the effect on nitrogen loss and compost maturity. The composting experiment used the in-vessel composting method and was conducted continuously for 15 days. High-throughput sequencing was used to analyze the bacterial community during composting. Results showed that the secondary fermentation mature compost mixed with sulfur powder group had the most reduction of ammonia emission (56%) and the primary fermentation mature compost amendments were the most effective for nitrous oxide emission reduction (37%). The temperature, pH, and nitrogen forms of transformation of the pile significantly affect the nitrogen loss during composting. Firmicutes helped to promote the rapid warming of the pile, and Actinobacteria and Proteobacteria played an important role in decomposition of organic matter. Thermobifida and Ureibacillus had a main contribution to the rapid degradation of organic matter in the process of composting. The relative abundance of nitrogen-fixing bacteria was higher, and the relative abundance of predominantly ammonifying and denitrifying bacteria was lower than the control group, with the addition of different additives. [ABSTRACT FROM AUTHOR]

Traditional denitrification often produces high operating costs and excessive sludge disposal expenses due to conventional carbon sources. A novel electric–magnetic field (MF) 48 mT with Fe0 and C-Fe0 powder in an upflow microaerobic sludge reactor (UMSR) improved nitrogen removal from wastewater without organic carbon resources and gave richness to the heterotrophic bacterial community. In the current study, the reactor was operated for 78 ± 2 days, divided into five stages (without Fe0, with Fe0, coupling with MF, without coupling with MF, and coupling with MF again), at a hydraulic retention time (HRT) of 2.5 h, with an influent loading of ammonium (NH4+-N) 50 ± 2 mg/L, at 25–27 °C, and less than 1.0 mg/L dissolved oxygen (DO). The results demonstrated nitrogen removal efficiency enhanced after coupling with MF on the levels of NO3−-N by 76% with an effluent concentration of 8.7 mg/L, NH4+-N by 72% with an effluent concentration of 13.6 mg/L, and total nitrogen removal (TN) by 76%, respectively. After coupling the MF with the reactor, the microbial community data analysis showed the dominant abundance of ammonia-oxidizing bacteria, heterotrophic nitrifying bacteria, and denitrifying bacteria on the level of Anaerolineaceae_uncultured 2%, which is capable of denitrification that uses Fe2+ as an electron source, Gemmatimonadaceae_uncultured 4%, Hydrogenophaga 4% which is capable of catalyzing hydrogenotrophic denitrification and correlating to nitrate removal, denitrification and desulfurization bacteria SBR1031_norank 18%, anammox-bacteria Saccharimonadales_norank 2%, and (AOM) Limnobacter 3% in the sludge. [ABSTRACT FROM AUTHOR]

Independent supplementation with nitrate (NIT) and resveratrol (RSV) enriches various aspects of mitochondrial biology in key metabolic tissues. Although RSV is known to activate Sirt1 and initiate mitochondrial biogenesis, the metabolic benefits elicited by dietary nitrate appear to be dependent on 50-adenosine monophosphate-activated protein kinase (AMPK)-mediated signaling events, a process also linked to the activation of Sirt1. Although the benefits of individual supplementation with these compounds have been characterized, it is unknown if co-supplementation may produce superior metabolic adaptations. Thus, we aimed to determine if treatment with combined +NIT and +RSV (+RN) could additively alter metabolic adaptations in the presence of a high-fat diet (HFD). Both +RSV and +NIT improved glucose tolerance compared with HFD (P < 0.05); however, this response was attenuated following combined +RN supplementation. Within skeletal muscle, all supplements increased mitochondrial ADP sensitivity compared with HFD (P < 0.05), without altering mitochondrial content. Although +RSV and +NIT decreased hepatic lipid deposition compared with HFD (P < 0.05), this effect was abolished with +RN, which aligned with significant reductions in Sirt1 protein content (P < 0.05) after combined treatment, in the absence of changes to mitochondrial content or function. Within epididymal white adipose tissue (eWAT), all supplements reduced crown-like structure accumulation compared with HFD (P < 0.0001) and mitochondrial reactive oxygen species (ROS) emission (P < 0.05), alongside reduced adipocyte cross-sectional area (CSA) (P < 0.05), with the greatest effect observed after +RN treatment (P = 0.0001). Although the present data suggest additive change in adipose tissue metabolism after +RN treatment, concomitant impairments in hepatic lipid homeostasis appear to prevent improvements in whole body glucose homeostasis observed with independent treatment, which may be Sirt1 dependent. [ABSTRACT FROM AUTHOR]

Aerobic granular sludge (AGS) systems treating effluents with a C:N:P ratio similar to real old landfill leachate were evaluated on simultaneous C, N and P removals, and to reduce the main problems encountered, such as nitrite accumulation, biomass loss, and granule disintegration. Therefore, six sequential batch reactors (SBR) were operated with different anaerobic (A), anoxic (An), and aerobic (O) configurations: A/O (R1 and R2), O/An with conventional feeding and well-defined anoxic phase (R3), O/An with step-feeding and well-defined anoxic phase (R4), and O/An (R5 and R6). The O/An with step-feeding reactor (R4) had the highest biomass retention/settleability (SVI 30 < 50 mL/g), the best nitrification rates (99%), and chemical oxygen demand (COD) (97%), total nitrogen (91%) and total phosphorous (55%) removals. Furthermore, there was no nitrite accumulation, and granules' disintegration was insignificant. The most abundant phylum in the reactors O/An was Planctomycetota, composed mainly of organisms from the Pirellulaceae and Legionellaceae families. In these reactors, the abundance of phosphorus-accumulating organisms (PAOs) and denitrifying bacteria were similar, while the abundance of glycogen-accumulating organisms was much higher than PAOs. Therefore, the type of cycle directly influences performance, granule characteristics, and system stability, being important for future investigations applying the AGS technology to leachate treatment. [Display omitted] • Effect of cycle type was studied in aerobic granular sludge (AGS) systems. • Oxic (O)/anoxic (An)-type reactor with a well-defined An phase was the best cycle configuration. • The highest COD, TN, and P removals were achieved at the O/An cycle with step-feeding. • The intercalation of the feast/famine and anoxic periods minimized nitrite accumulation. • Planctomycetota was the most abundant phylum in the reactors with a well-defined anoxic phase and step-feeding. [ABSTRACT FROM AUTHOR]

To further study saline-alkali soil cultivation, the terminal-restriction fragment length polymorphism (T-RFLP) was used to analyze the effects of different salt concentrations on the denitrification functional genes nirS and nosZ after collecting different soil samples and extracting total soil DNA. The results showed that the variation range of nirS gene abundance was concentrated in 14 segments, the nosZ gene abundance was concentrated in 9 segments. The abundance of nirS gene in paddy soil of different concentrations was higher than nosZ, and the activity of the nirS gene was higher. Diversity index analysis showed that sample I was significantly different from III and IV in the Shannon index of the nirS. Sample I and IV were significantly different from III in Simpson index. Except for the significant difference between III and I, II, IV, and V, there was no difference between the other four samples significant in Pielou index. The difference between sampl I and V was extremely significant in Brillouin index. The Shannon index, Simpson index and Pielou index of nosZ gene were not significantly different, sample II and III, IV, V were significantly different in Brillouin index. The diversity of nirS gene was more affected by the salt concentration, and the nirS gene was more widely distributed than nosZ in soil with different salt concentrations. It indicated that nirS -mediated nitrite reductase played an important role in salinity affected soil environment. [ABSTRACT FROM AUTHOR]

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Copyright of Environmental Science & Technology (10036504) is the property of Editorial Board of Environmental Science & Technology and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

Prince William Sound (PWS) is a large estuarine-fjord system connected with the northern Gulf of Alaska. Many ecologically and economically important predators, such as juvenile herring and pink salmon, benefit from seasonally abundant and structured plankton prey fields. Past studies on primary production in PWS were based mostly on chlorophyll measurements, which lacked information about food quality and seasonal changes. In 2019, oceanographic data and phytoplankton samples were collected seasonally from the open waters and four nearshore bays in PWS. Laboratory microscopic identification and enumeration of phytoplankton samples provided taxonomic composition and abundance of the larger-celled diatoms and dinoflagellates. Both the total species abundance and community structure cluster analysis showed statistically significant seasonality and subregional differences within the Sound. Diatoms were numerically the most dominant group through spring and summer while dinoflagellates became more abundant in late autumn season. The spring diatom bloom continued in influence through June. High chlorophyll concentrations measured at Whale and Eaglek Bays in early March imply a late winter bloom in these locations. Correlation analysis revealed several influential variables on year-round community patterns including stratification, average temperature of the mixed layer, downwelling condition, nitrate, and silicate. Although this 1-year seasonality study is limited in its representation of other specific years, the findings suggest an appropriate direction for future studies, such as earlier sampling from late winter through spring months, and confirming of the presence of late summer and early autumn blooms. [ABSTRACT FROM AUTHOR]

A high rate of elemental sulfur (S0) accumulation from sulfide-containing wastewater has great significance in terms of resource recovery and pollution control. This experimental study used Thiobacillus denitrificans and denitrifying bacteria incorporated with signal molecules (C6 and OHHL) for simultaneous sulfide (S2–) and nitrate (NO3–) removal in synthetic wastewater. Also, the effects on S0 accumulation due to changes in organic matter composition and bacteria proportion through signal molecules were analyzed. The 99.0% of S2– removal and 99.3% of NO3– was achieved with 66% of S0 accumulation under the active S2– removal group. The S0 accumulation, S2– and NO3– removal mainly occurred in 0–48 h. The S0 accumulation in the active S2– removal group was 2.0-6.3 times higher than the inactive S2– removal groups. In addition, S0/SO42- ratio exhibited that S0 conversion almost linearly increased with reaction time under the active S2– removal group. The proportion of Thiobacillus denitrificans and H+ consumption showed a positive correlation with S0 accumulation. However, a very high or low ratio of H+/S0 is not suitable for S0 accumulation. The signal molecules greatly increased the concentration of protein-I and protein-II, which resulted in the high proportion of Thiobacillus denitrificans. Therefore, high S0 accumulation was achieved as Thiobacillus denitrificans regulated the H+ consumption and electron transfer rate and provided suppressed oxygen environment. This technology is cost-effective and commercially applicable for recovering S0 from wastewater. [ABSTRACT FROM AUTHOR]

Introduction: In Kimoto-style fermentation, a fermentation starter is produced before the primary brewing process to stabilize fermentation. Nitrate-reducing bacteria, mainly derived from brewing water, produce nitrite, and lactic acid bacteria such as Leuconostoc can proliferate because of their tolerance toward low temperature and their low nutritional requirements. Later, Lactobacillus becomes the dominant genus, leading to weakly acidic conditions that contribute to control yeasts and undesired bacterial contaminants. However, the sources of these microorganisms that play a pivotal role in Sake brewing have not yet been revealed. Thus, comprehensive elucidation of the microbiome is necessary. Methods: In this study, we performed 16S rRNA amplicon sequencing analysis after sampling from floor, equipment surfaces, and raw materials for making fermentation starters, including koji, and water in Tsuchida Sake brewery, Gunma, Japan. Results: Amplicon sequence variants (ASVs) between the external environments and the fermentation starter were compared, and it was verified that the microorganisms in the external environments, such as built environments, equipment surfaces, and raw materials in the sake brewery, were introduced into the fermentation starter. Furthermore, various adventitious microbes present in the fermentation starter of early days and from the external environments were detected in a nonnegligible proportion in the starter, which may impact the taste and flavor. Discussion: These findings illuminate the uncharacterized microbial dark matter of sake brewing, the sources of microbes in Kimoto-style fermentation. [ABSTRACT FROM AUTHOR]

Introduction: Chlorhexidine (CHX) and essential oil containing mouthwashes like Listerine® can improve oral hygiene via suppressing oral microbes. In hospitalized patients, CHX mouthwash reduces the incidence of ventilator-associated pneumonia. However, CHX use was also associated with increased mortality, which might be related to nitrate-reducing bacteria. Currently, no study determines oral bacteria targeted by essential oils mouthwash in hospitalized patients using a metagenomic approach. Methods: We recruited 87 hospitalized patients from a previous randomized control study, and assigned them to three mouthwash groups: CHX, Listerine, and normal saline (control). Before and after gargling the mouthwash twice a day for 5-7 days, oral bacteria were examined using a 16S rDNA approach. Results: Alpha diversities at the genus level decreased significantly only for the CHX and Listerine groups. Only for the two groups, oral microbiota before and after gargling were significantly different, but not clearly distinct. Paired analysis eliminated the substantial individual differences and revealed eight bacterial genera (including Prevotella, Fusobacterium, and Selenomonas) with a decreased relative abundance, while Rothia increased after gargling the CHX mouthwash. After gargling Listerine, seven genera (including Parvimonas, Eubacterium, and Selenomonas) showed a decreased relative abundance, and the magnitudes were smaller compared to the CHX group. Fewer bacteria targeted by Listerine were reported to be nitrate-reducing compared to the CHX mouthwash. Discussion: In conclusion, short-term gargling of the CHX mouthwash and Listerine altered oral microbiota in our hospitalized patients. The bacterial genera targeted by the CHX mouthwash and Listerine were largely different and the magnitudes of changes were smaller using Listerine. Functional alterations of gargling CHX and Listerine were also different. These findings can be considered for managing oral hygiene of hospitalized patients. [ABSTRACT FROM AUTHOR]

Excessive nitrogen (N) input is an important factor influencing aquatic ecosystems and has received increasing public attention in the past decades. It remains unclear how N input affects the denitrifying bacterial communities that play a key role in regulating N cycles in various ecosystems. To test our hypothesis—that the abundance and biodiversity of denitrifying bacterial communities decrease with increasing N—we compared the abundance and composition of denitrifying bacteria having nitrous oxide reductase gene (nosZ I) from sediments (0–20 cm) in five experimental ponds with different nitrogen fertilization treatment (TN10, TN20, TN30, TN40, TN50) using quantitative PCR and pyrosequencing techniques. We found that (1) N addition significantly decreased nosZ I gene abundance, (2) the Invsimpson and Shannon indices (reflecting biodiversity) first increased significantly along with the increasing N loading in TN10–TN40 followed by a decrease in TN50, (3) the beta diversity of the nosZ I denitrifier was clustered into three groups along the TN concentration levels: Cluster I (TN50), Cluster II (TN40), and Cluster III (TN10–TN30), (4) the proportions of Alphaproteobacteria and Betaproteobacteria in the high-N treatment (TN50) were significantly lower than in the lower N treatments (TN10–TN30). (5) The TN concentration was the most important factor driving the alteration of denitrifying bacteria assemblages. Our findings shed new light on the response of denitrification-related bacteria to long-term N loading at pond scale and on the response of denitrifying microorganisms to N pollution. [ABSTRACT FROM AUTHOR]

Simple Summary: Heavy nitrogen pollution is a major ecological problem for cold aquifers near the zone of a radioactive waste surface repository. Unique microbial communities are formed in these groundwater ecosystems that could be used for sustainable bioremediation in situ. Prior to field experiments, in this work we obtained and analyzed enrichment cultures of N cycle bacteria to shed light on their metabolic capabilities. Despite high N conversion activity, surprisingly, no "conventional" nitrifying bacteria were found in enrichment cultures. Moreover, stable nitrite production could be achieved through heterotrophic denitrification, which implies great potential to produce nitrite for sustainable anammox-based bioremediation. Anammox bacteria were difficult to enrich in fed-batch culture. However, stable removal of ammonium and nitrite under anaerobic conditions could be achieved in a continuous flow reactor packed with nonwoven fabric. Intriguing was the high nonstoichiometric buildup of nitrate, which could be an adaptive mechanism of anammox bacteria to low temperature. Xanthomonadaceae was a common taxon for all enrichment cultures, indicating its exclusive role in this ecosystem. Moreover, its representatives, genera Thermomonas and Stenotrophomonas, have nitrite oxidoreductases (nxr), which may explain the observed high accumulation of nitrates. These findings may be important in anammox-based low-temperature wastewater treatment. Anammox bacteria related to Candidatus Scalindua were recently discovered in a cold (7.5 °C) aquifer near sludge repositories containing solid wastes of uranium and processed polymetallic concentrate. Groundwater has a very high level of nitrate and ammonia pollution (up to 10 and 0.5 g/L, respectively) and a very low content of organic carbon (2.5 mg/L). To assess the potential for bioremediation of polluted groundwater in situ, enrichment cultures of anammox, nitrifying, and denitrifying bacteria were obtained and analyzed. Fed-batch enrichment of anammox bacteria was not successful. Stable removal of ammonium and nitrite (up to 100%) was achieved in a continuous-flow reactor packed with a nonwoven fabric at 15 °C, and enrichment in anammox bacteria was confirmed by FISH and qPCR assays. The relatively low total N removal efficiency (up to 55%) was due to nonstoichiometric nitrate buildup. This phenomenon can be explained by a shift in the metabolism of anammox bacteria towards the production of more nitrates and less N2 at low temperatures compared to the canonical stoichiometry. In addition, the too high an estimate of specific anammox activity suggests that N cycle microbial groups other than anammox bacteria may have contributed significantly to N removal. Stable nitrite production was observed in the denitrifying enrichment culture, while no "conventional" nitrifiers were found in the corresponding enrichment cultures. Xanthomonadaceae was a common taxon for all microbial communities, indicating its exclusive role in this ecosystem. This study opens up new knowledge about the metabolic capabilities of N cycle bacteria and potential approaches for sustainable bioremediation of heavily N-polluted cold ecosystems. [ABSTRACT FROM AUTHOR]

• nirS gene abundance ranged from 2.61 to 5.36 × 105 copies/mL in aerobic layers. • Paracoccus sp., Dechloromonas sp. and Thauera sp. were the dominant genera. • Co-interaction of denitrifying bacterial communities was explored by network model. • nirS-type denitrifying bacterial compositions were shaped by water quality. The nirS -type denitrifying bacterial community is the main drivers of the nitrogen loss process in drinking water reservoir ecosystems. The temporal patterns in nirS gene abundance and nirS -type denitrifying bacterial community harbored in aerobic water layers of drinking water reservoirs have not been studied well. In this study, quantitative polymerase chain reaction (qPCR) and Illumina Miseq sequencing were employed to explore the nirS gene abundance and denitrifying bacterial community structure in two drinking water reservoirs. The overall results showed that the water quality parameters in two reservoirs had obvious differences. The qPCR results suggested that nirS gene abundance ranged from (2.61 ± 0.12) × 105 to (3.68 ± 0.16) × 105 copies/mL and (3.01 ± 0.12) × 105 to (5.36 ± 0.31) × 105 copies/mL in Jinpen and Lijiahe reservoirs, respectively. The sequencing results revealed that Paracoccus sp., Azoarcus sp., Dechloromonas sp. and Thauera sp. were the dominant genera observed. At species level, Cupriavidus necator, Dechloromonas sp. R-28400, Paracoccus denitrificans and Pseudomonas stutzeri accounted for more proportions in two reservoirs. More importantly, the co-occurrence network analysis demonstrated that Paracoccus sp. R-24615 and Staphylococcus sp. N23 were the keystone species observed in Jinpen and Lijiahe reservoirs, respectively. Redundancy analysis indicated that water quality (particularly turbidity, water temperature, pH and Chlorophyll a) and sampling time had significant influence on the nirS -type denitrifying bacterial community in both reservoirs. These results will shed new lights on exploring the dynamics of nirS -type denitrifying bacteria in aerobic water layers of drinking water reservoirs. Graphical Abstract [Display omitted] [ABSTRACT FROM AUTHOR]

Psychrophilic bacteria with aerobic denitrification ability have promising potential for application in nitrogen-contaminated wastewater treatment, especially under cold conditions. A better understanding of the cold adaptation mechanism during aerobic denitrification would be beneficial for the practical application of this type of functional bacterium. In this study, Bacillus simplex H-b with good denitrification performance at 5°C was used to investigate the corresponding cold tolerance mechanism. Transcriptomics and nitrogen removal characterization experiments were conducted at different temperatures (5°C, 20°C, and 30°C). At low temperatures, more nitrogen was utilized for assimilation, accompanied by the accumulation of ATP and extracellular polymeric substances (EPS), rather than transforming inorganic nitrogen in the dissimilation pathway. In addition, the proportion of unsaturated fatty acids was higher in strains cultured at low temperatures. At the molecular level, the adjustment of membrane transport, synthesis of cofactors and vitamins, and transcriptional regulators might contribute to the survival of the strain under cold conditions. Moreover, nucleotide precursor synthesis, translation, and oxidative and temperature stress response mechanisms also enhanced the resistance of strain H-b to low temperatures. The results suggest that combining multiple regulatory mechanisms and synergistic adaptation to cold stress enabled the growth and relatively high nitrogen removal rate (27.22%) of strain H-b at 5°C. By clarifying the mechanism of regulation and cold resistance of strain H-b, a theoretical foundation for enhancing the application potential of this functional bacterium for nitrogen-contaminated wastewater treatment was provided. [ABSTRACT FROM AUTHOR]

Carbon source starvation can promote steel corrosion in the presence of a pure culture through extracellular electron transfer (EET). However, the impact of carbon source starvation on corrosion induced by mixed strains is still unknown. This work investigated the impact of carbon source starvation on EH40 steel corrosion in the presence of Desulfovibrio vulgaris and Pseudomonas aeruginosa, typical species of sulfate- and nitrate-reducing bacteria. It was found that the impact of carbon source starvation on corrosion depended on nitrate addition. When nitrate (5 g∙L−1 NaNO3) was not added, the corrosion was promoted by carbon source starvation. However, the corrosion was initially promoted by carbon source starvation, but later inhibited with nitrate addition. The corrosion behaviors in different systems were closely related to different numbers of the strains in biofilms and their metabolic activities, and the mechanisms were revealed. [ABSTRACT FROM AUTHOR]

Microalgae play an important role in the formation of biofloc. To demonstrate the feasibility of Chlorella pyrenoidosa in biofloc formation, an experiment was performed with a simple random design consisting of five inoculation levels (in triplicate) of C. pyrenoidosa (0, 1 × 108, 1 × 109, 5 × 109, and 1 × 1010 cells·L−1) in the biofloc system. All treatments kept a C:N ratio of approximately 15:1. This study observed the effects of different initial concentrations of C. pyrenoidosa on biofloc formation, water quality and bacterial community in biofloc systems. The results indicated that C. pyrenoidosa had the ability to enhance biofloc development, especially when the C. pyrenoidosa initial concentration reached 5~10 × 109 cells·L−1. Too high or too low a concentration of C. pyrenoidosa will adversely affect the formation of biofloc. The effect of C. pyrenoidosa addition on water quality (TAN, NO2−-N, and NO3−-N) was not significant in the final stage. The inoculation of C. pyrenoidosa decreased the species richness and diversity of the bacterial community but increased the domination of Proteobacteria and Bacteroidota in the biofloc system, especially the order of Rhizobiales. The addition of C. pyrenoidosa could maintain water quality by increasing the proportion of several denitrifying bacteria, including Flavobacterium, Chryseobacterium, Pseudomonas, Brevundimonas, Xanthobacter, etc. These above dominant denitrifying bacteria in the biofloc system could play a major role in reducing the concentration of NO2−-N and NO3−-N. So, we recommended the reasonable concentration is 5~10 × 109 cells·L−1 if C. pyrenoidosa is used to rapidly produce biofloc. [ABSTRACT FROM AUTHOR]

Excess suspended particulate matter (PM) in constructed wetland (CW) substrates may reduce the substrate porosity and thus affect pollutant removal performance. However, it remains unclear how different PMs affect the nitrogen removal performance in CWs. In this study, kaolin and polystyrene (PS) were selected as two model PMs added to CW substrates at a concentration of 100 mg/L. Four CWs were constructed, designated as C-CW without PM addition, K-CW with kaolin addition, M-CW with mixed addition of kaolin and PS, and PS-CW with PS addition. The CWs with or without PM addition showed no significant difference in terms of NH4+-N removal efficiency (p > 0.05), while the removal efficiency of NO3−-N and TN was significantly improved in PS-CW but, in contrast, was considerably inhibited in K-CW and M-CW (p < 0.05). The CWs with PM addition reduced the porosity of the substrates. There was no significant difference in the total solid quality among the CWs with PM addition (p < 0.05), but PS-CW had the highest volatile solid content. The addition of 100 mg/L PS significantly increased the activities of nitrite reductase (NIR) and nitrate reductase (NAR) with a much higher relative abundance of denitrifying bacteria, but it inhibited ammonia monooxygenase (AMO) and nitrite oxidoreductase (NXR) activities (p < 0.05). The activities of the four enzymes were improved to different degrees in K-CW and M-CW, in which the abundance of nitrifying bacteria was higher than that in C-CW. In conclusion, it was noteworthy that the effect of the PMs on the NO3−-N and TN removal performance were qualitatively different (i.e., enhanced vs. inhibited) with different types of PMs. This interesting and important new finding could provide valuable information for a better understanding and evaluation of the role of PMs in the nitrogen removal process during CW operation. [ABSTRACT FROM AUTHOR]

The kleptoplast is surrounded by three membranes, of which the outermost membrane is the phagosomal membrane of Rapaza, while the inner two are envelopes of the Tetraselmis plastid ([2]). Secondary plastids are surrounded by additional membranes (three or four compared to two in primary plastids), and thus, more complexity occurs in the translocation of metabolites and proteins than in primary plastids. Transporters in plasma- and phagosomal membranes are probably encoded in the Rapaza genome, while the nitrite transporter on the inner envelope is from Rapaza and/or Tetraselmis. [Extracted from the article]

In this study, effects of bioelectrochemical technique on methane emission and energy recovery, and related mechanism underlying microbial competition were investigated. The results showed that running MFC was beneficial in reducing CH4 emissions and promoting COD removal rates, regardless of whether the plant roots were located at the anode or the cathode. CH4 emission was significantly higher in open-circuit reactors (6.2 mg m−2 h−1) than in closed-circuit reactors (3.1 mg m−2 h−1). Plant roots at the cathode had the highest electricity generation and the lowest CH4 emissions. The highest power generation (0.49 V, 0.33 w m−3) and the lowest CH4 emissions (2.3 mg m−2 h−1) were observed in the reactors where Typha orientalis was planted with plant roots at the cathode. The role of plants in strengthening electron acceptor was greater than that of plant rhizodeposits in strengthening electron donors. Real-time quantitative PCR (q-PCR) and correlation analysis indicated that the mcrA genes and CH4 emissions were positively correlated (r = 0.98, p < 0.01), while no significant relationship between CH4 emissions and pmoA genes was observed. Illumina sequencing revealed that more abundant exoelectrogens and denitrifying bacteria were observed when plant roots were located in cathodes. Strictly acetotrophic archae (Methanosaetaceae) were likely the main electron donor competitors with exoelectrogens. The results showed that the location of both plant species and plant roots at the electrode played an important role in CH4 control and electricity generation. Therefore, it is necessary to strengthen plant configuration to reduce CH4 emissions, to promote sustainable development of wastewater treatment. [ABSTRACT FROM AUTHOR]

To study the inorganic nitrogen in the process of interaction of river and groundwater and the changes in the microbial community, a vertical simulation device was used to simulate groundwater recharge to river water (upwelling) and river water recharge to groundwater (downwelling). The inorganic nitrogen concentrations in the soil and water solution as well as the characteristics of the microbial community were assessed to determine the inorganic nitrogen transformation and microbial community response in the heterogeneous interaction zone under hydrodynamic action, and the interaction mechanism between nitrogen transformation and the microbial community in the interaction zone was revealed. The removal rates of NO3−-N in the simulated solution reached 99.1% and 99.3% under the two fluid-groundwater conversion modes, and the prolonged hydraulic retention time (HRT) of the oxidization-reduction layer in the fine clay area and the high organic matter content made the inorganic nitrogen transformation process dominated by microorganisms more complete. The denitrification during upwelling, dominated by denitrifying bacteria in Sphingomonas, Pseudomonas, Bacillus, and Arthrobacter, was stronger than that during downwelling. Dissimilatory nitrate reduction to ammonium (DNRA), controlled by some aerobic bacteria in Pseudomonas, Bacillus, and Desulfovibrio, was more intense in downflow mode than upflow mode. [ABSTRACT FROM AUTHOR]

Saline wastewater pollution is a critical issue that needs to be addressed. The present study focused on the development of a dual-chambered microbial fuel cell (MFC) treating saline wastewater at the anode. Halophilic exo-electrogenic bacteria enriched from seawater (Arabian Sea, Mumbai, India) were used in the anodic chamber of the MFC. Denitrification using denitrifying bacteria was employed in the cathodic chamber. The maximum power density was significantly increased from 96.77 mW/m2 to 162.09 mW/m2 with a rise in NaCl concentration from 20 to 40 g/L. Nitrate removal in the cathode chamber increased from 80 ± 3% to 89 ± 3.2% with increase in salt concentration from 20 g/L to 40 g/L and concomitantly COD removal in the anode chamber increased from 76 ± 3.8% to 83 ± 4%. Cyclic voltammetry (CV) analysis revealed higher electrochemical activity at 40 g/L salt concentration. Electrochemical impedance spectroscopy (EIS) analysis exhibited that charge transfer and solution resistances were lower when the salinity was increased. Microbial community analysis revealed the presence of Clostridium, Shewanella, and Bacillus as the most abundant genera in the anodic chamber. This study demonstrated the dual applicability of the system targeted for removal of organics from saline wastewater and nitrate removal from contaminated wastewater accompanied by power generation from the MFC. [ABSTRACT FROM AUTHOR]

In order to understand the mechanisms of microbial growth on waste polyurethane sponge materials, their effectiveness as biomass carriers in domestic sewage with increased ammonium nitrogen content treatment was assessed. Comparative experiments were carried out in microreactors under steady conditions of batch culture, which allowed for an assessment of different carriers, in the form of flexible foams, rigid foams, and flexible foams placed in full casings. In the studies conducted in continuous cultures, biomass carriers selected in batch culture were used as fillings in the column model. The structure of the microbial community inhabiting the spongy material was determined and the pollutant-removing process from real domestic sewage was assessed. Analyzes using the Illumina sequencing technique allowed for demonstrating that Nitrosomonas and Nitrospira were the predominant nitrifiers in the biomass carrier in the form of waste polyurethane foams (PUF). It was found that anammox bacteria, the presence of which—as unidentified Planctomycetes—was confirmed in the polyurethane sponge material, were also responsible for the high removal of N-NH4+. Burkholderia and Sphingopyxis phyla were identified as the dominant denitrifying bacteria involved in the treatment of domestic sewage with increased content of ammonium nitrogen. The biomass carrier in the form of waste PUF placed additionally in full casings proved to be more beneficial for the proliferation of bacteria involved in nitrification and denitrification processes. On the other hand, waste foams without casings proved to be more suitable for the growth of microorganisms known to perform partial denitrification and may accumulate nitrites (Staphylococcus, Dokdonella). Additionally, the presence of Devosia and Pseudonocardia, which participated in the phosphorus removal process, was found in the waste PUR foams. [ABSTRACT FROM AUTHOR]