2,269 results on '"Cupriavidus necator"'
Search Results
202. Plastics Completely Synthesized by Bacteria: Polyhydroxyalkanoates
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Chen, Guo-Qiang and Chen, George Guo-Qiang, editor
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- 2010
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203. Biosynthesis of poly-3-hydroxybutyrate from grass silage by a two-stage fermentation process based on an integrated biorefinery concept.
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Schwarz, Dominik, Schoenenwald, Amelie K.J., Dörrstein, Jörg, Sterba, Jan, Kahoun, David, Fojtíková, Pavla, Vilímek, Josef, Schieder, Doris, Zollfrank, Cordt, and Sieber, Volker
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BIOSYNTHESIS , *POLY-beta-hydroxybutyrate , *GRASS silage , *FERMENTATION , *BACTERIAL growth , *ORGANIC acids - Abstract
Highlights • Novel two-stage fermentation process for PHB production from grass silage. • Various carbon sources in grass silage used for bioconversion to PHB. • Nutrient-rich PJ as a suitable ready-to-use medium for bacterial growth. • Upstream LAB fermentation of PC hydrolyzate prevents repression effects. • PHB accumulation on consumption of organic acids reached 8.5 g L−1 in 32 h. Abstract Grass silage as a renewable feedstock for an integrated biorefinery includes nutrients and carbon sources directly available in the press juice (PJ) and in lignocellulosic saccharides from the plant framework. Here, a novel two-stage fed-batch fermentation process for biosynthesis of poly-3-hydroxybutyrate (PHB) by Cupriavidus necator DSM 531 is presented. For bacterial growth, nutrient-rich PJ was employed as a fermentation medium, without any supplements. Saccharides derived from the mechano-enzymatic hydrolysis of the press cake (PC) were subjected to a lactic acid fermentation process, before the fermentation products were fed into the polymer accumulation phase. By combination of pH-stat feeding and cell recycling, the PHB content in 22 g L−1 total-dry cells reached 39% after 32 h of cultivation. Using mimicked hydrolyzate of diluted PJ artificially supplemented with glucose and xylose, the resulting cell dry weight of 21 g L−1 contained 42% PHB. [ABSTRACT FROM AUTHOR]
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- 2018
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204. Structural Insights into Polyhydroxyalkanoates Biosynthesis.
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Sagong, Hye-Young, Son, Hyeoncheol Francis, Choi, So Young, Lee, Sang Yup, and Kim, Kyung-Jin
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POLYHYDROXYALKANOATES synthesis , *BIOSYNTHESIS , *COENZYME A , *CRYSTAL structure , *BIODEGRADABLE plastics , *RALSTONIA eutropha - Abstract
Polyhydroxyalkanoates (PHAs) are diverse biopolyesters produced by numerous microorganisms and have attracted much attention as a substitute for petroleum-based polymers. Despite several decades of study, the detailed molecular mechanisms of PHA biosynthesis have remained unknown due to the lack of structural information on the key PHA biosynthetic enzyme PHA synthase. The recently determined crystal structure of PHA synthase, together with the structures of acetyl-coenzyme A (CoA) acetyltransferase and reductase, have changed this situation. Structural and biochemical studies provided important clues for the molecular mechanisms of each enzyme as well as the overall mechanism of PHA biosynthesis from acetyl-CoA. This new information and knowledge is expected to facilitate production of designed novel PHAs and also enhanced production of PHAs. Highlights Polyhydroxyalkanoates (PHAs) are natural polyesters consisting of various hydroxyalkanoates (HAs) and have attracted much attention as a feasible substitute to conventional petroleum-based plastics. The PHA biosynthetic pathway consists of three enzymes: acetyl-CoA acetyltransferase (PhaA), acetoacetyl-CoA reductase (PhaB), and PHA synthase (PhaC). PhaA catalyzes the two-step condensation reaction of acetyl-CoA to acetoacetyl-CoA, and the size of the binding pocket for acyl-S-enzyme intermediate determines the substrate specificity of the enzyme. Acetoacetyl-CoA is reduced to (R)-3-hydroxybutyryl-CoA by PhaB using NADPH as a cofactor. PHA polymerization reaction takes place at the C-terminal domain of PhaC via non-processive ping-pong mechanism, and the N-terminal domain of PhaC plays an important role in the binding and localization of PhaC to the PHA granule. PhaM binds to the N-terminal domain of PhaC and activates PhaC by reinforcing the binding capacity of PhaC to the growing PHB polymer. The amphipathic surfactant properties of the PhaP are crucial for its interactions with polymer and the other granule-associated proteins PhaR and PhaZ. [ABSTRACT FROM AUTHOR]
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- 2018
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205. Production of poly(3-hydroxybutyrate) from a complete feedstock derived from biodiesel by-products (crude glycerol and rapeseed meal).
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Salakkam, Apilak and Webb, Colin
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POLYHYDROXYBUTYRATE , *FEEDSTOCK , *BIODIESEL fuels , *GLYCERIN , *NITROGEN - Abstract
A combination of crude glycerol and rapeseed meal from biodiesel production can be utilised to produce a complete microbial feedstock for value-added chemicals production. In this study, rapeseed meal was transformed into a solution rich in free amino nitrogen and was used as a nitrogen source, in combination with crude glycerol as carbon source, to produce poly(3-hydroxybutyrate) (PHB). Using Cupriavidus necator in fed-batch fermentation, PHB concentration at 24.75 g/L with a productivity of 0.21 g·L −1 h −1 , and a yield of 0.32 g-PHB/g-glycerol were obtained. Based on these results, a process for bioconversion of biodiesel by-products to PHB is proposed. In this process, 3.41 L of crude glycerol and 0.72 kg of rapeseed meal are all that is required for the production of 1 kg of PHB. The study demonstrates clearly that a complete microbial feedstock with no requirement for further nutrient supplements can be derived directly from the principal by-products of a conventional biodiesel process. [ABSTRACT FROM AUTHOR]
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- 2018
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206. Evaluation of date seed oil and date molasses as novel carbon sources for the production of poly(3Hydroxybutyrate-co-3Hydroxyhexanoate) by Cupriavidus necator H16 Re 2058/pCB113.
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Purama, Ravi Kiran, Al-Sabahi, Jamal Nasser, and Sudesh, Kumar
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DATES (Fruit) , *MOLASSES , *ESSENTIAL oils , *CARBON analysis , *BIOSYNTHESIS , *POLYHYDROXYALKANOATES - Abstract
Cupriavidus necator H16 Re2058/pCB113 could effectively utilize oil sources to synthesize P(3HB- co -3HHx). In this study, P(3HB- co -3HHx) biosynthesis procedure with optimally controlled (between 2–28) 3HHx mol% was established for C. necator H16 Re2058/pCB113 by regulating the amounts of dual carbon sources supplied; date molasses and date seed oil. Alone, date molasses supplied at 20 g/L total sugar equivalents to recombinant C. necator resulted in pure P(3HB) biosynthesis, with accumulation up to 28 wt% of cell dry weight (CDW), and effective total biomass of 4 g/L. Whereas, date seed oil supply alone or in combination with date molasses resulted in P(3HB- co -3HHx) biosynthesis. P(3HB- co -3HHx) with as high as 28 mol% 3HHx, up to 80 wt% of CDW and total biomass of 7.6 g/L were produced using 10 g/L date seed oil as the sole carbon source. The results of PHA production in the presence of date seed oil as a sole carbon source was obtained with a modest yield at a range of 0.38–0.62 g-PHA per g-date oil used. Gel permeation chromatography (GPC) analyses of these P(3HB- co -3HHx) copolymers exhibited weight average molecular weights ( M w ) between 500 − 690 kDa. Differential scanning calorimetry (DSC) analyses showed T m values of 157 °C and 85 °C for P(3HB) and P(3HB- co -28 mol% 3HHx), respectively. NMR analyses ( 1 H and 13 C) of P(3HB- co -3HHx) copolymers confirmed the incorporation of 3HHx monomers between 2–28 mol% depending on the supplied dual carbon source composition. [ABSTRACT FROM AUTHOR]
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- 2018
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207. Gas Fermentation Enhancement for Chemolithotrophic Growth of Cupriavidus necator on Carbon Dioxide.
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Jian Yu and Munasinghe, Pradeep
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FERMENTATION ,HYDROGEN bacteria ,CARBON dioxide ,GAS solubility ,MASS transfer - Abstract
Cupriavidus necator, a facultative hydrogen-oxidizing bacterium, was grown on carbon dioxide, hydrogen, and oxygen for value-added products. High cell density and productivity were the goal of gas fermentation, but limited by gas substrates because of their low solubility in the aqueous medium solution. Enhancement of gas fermentation was investigated by (i) adding n-hexadecane as a gas vector to increase the volumetric mass transfer coefficient (kLa) and gas solubility, (ii) growing C. necator under a raised gas pressure, and (iii) using cell mass hydrolysates as the nutrients of chemolithotrophic growth. In contrast to previous studies, little positive but negative effects of the gas vector were observed on gas mass transfer and cell growth. The gas fermentation could be significantly enhanced under a raised pressure, resulting in a higher growth rate (0.12 h
-1 ), cell density (18 g L-1 ), and gas uptake rate (200 mmole L-1 h-1 ) than a fermentation under atmospheric pressure. The gain, however, was not proportional to the pressure increase aspredicted by Henry's law. The hydrolysates of cell mass were found a good source of nutrients and the organic nitrogen was equivalent to or better than ammonium nitrogen for chemolithotrophic growth of C. necator on carbon dioxide. [ABSTRACT FROM AUTHOR]- Published
- 2018
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208. Acetic Acid as an Indirect Sink of CO2 for the Synthesis of Polyhydroxyalkanoates (PHA): Comparison with PHA Production Processes Directly Using CO2 as Feedstock.
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Garcia-Gonzalez, Linsey and De Wever, Heleen
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POLYHYDROXYALKANOATES synthesis ,ACETIC acid ,CARBON dioxide - Abstract
Featured Application: production of bioplastics with tailored composition and properties from the feedstock CO
2 , in view of maximal CO2 fixation and minimal H2 consumption. White biotechnology is promising to transform CO2 emissions into a valuable commodity chemical such as the biopolymer polyhydroxyalkanaotes (PHA). Our calculations indicated that the indirect conversion of acetic acid from CO2 into PHA is an interesting alternative for the direct production of PHA from CO2 in terms of CO2 fixation, H2 consumption, substrate cost, safety and process performance. An alternative cultivation method using acetic acid as an indirect sink of CO2 was therefore developed and a proof-of-concept provided for the synthesis of both the homopolymer poly(3-hydroxybutyrate) (PHB) and the copolymer poly(3-hydroxybutyrate-co-3-hydroxyvalerate) (PHBV). The aim was to compare key performance parameters with those of existing cultivation methods for direct conversion of CO2 to PHA. Fed-batch cultivations for PHA production were performed using a pH-stat fed-batch feeding strategy in combination with an additional Dissolved Oxygen (DO)-dependent feed. After 118 h of fermentation, 60 g/L cell dry matter (CDM) containing 72% of PHB was obtained, which are the highest result values reported so far. Fed-batch cultivations for PHBV production resulted in 65 g/L CDM and 48 g/L PHBV concentration with a 3HV fraction of 27 mol %. Further research should be oriented towards process optimisation, whole process integration and design, and techno-economic assessment. [ABSTRACT FROM AUTHOR]- Published
- 2018
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209. A simple mathematical model capable of describing the microbial production of poly(hydroxyalkanoates) under carbon‐ and nitrogen‐limiting growth conditions.
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Vega, Roberto and Castillo, Augusto
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POLYHYDROXYALKANOATES ,MATHEMATICAL models ,PSEUDOMONAS putida ,CONTINUOUS culture (Microbiology) ,FERMENTATION - Abstract
Abstract: BACKGROUND: Poly(hydroxyalkanoates) (PHAs) are biodegradable polymers that can replace conventional plastics, but microbial production of PHAs must be optimized for commercial success. The aim of this study is to provide a simple mathematical model based on previous studies in the literature to represent the production of PHAs in chemostat and batch cultures by Pseudomonas putida GPo1 (ATCC 29347) and Cupriavidus necator (DSM 545) grown on octanoate and glucose, respectively. RESULTS: Kinetic and stoichiometric equations, dependent on the specific growth rate of residual biomass (µ
R ), were developed for carbon‐ and nitrogen‐limiting growth conditions. The parameters have biochemical significance and are independent of the biomass concentration. The results revealed that the Luedeking–Piret model is growth‐associated for both fermentations under carbon limitation. In addition, the PHA content increases with µR . Meanwhile, the PHA content is amplified under nitrogen limitation but decreases as μR increases. Also, the Luedeking–Piret model exhibits a profile that depends on the synthesized polyhydroxyalkanoate. CONCLUSION: This study demonstrates that strategies for the production of PHAs require an in‐depth understanding of the process kinetics. This model gives satisfactory predictions, may be extended to fed batch cultures and may be adapted to other fermentations. © 2018 Society of Chemical Industry [ABSTRACT FROM AUTHOR]- Published
- 2018
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210. Nuclease expression in efficient polyhydroxyalkanoates-producing bacteria could yield cost reduction during downstream processing.
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Rodríguez Gamero, Jesús E., Favaro, Lorenzo, Pizzocchero, Valentino, Lomolino, Giovanna, Basaglia, Marina, and Casella, Sergio
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NUCLEASES , *GENE expression , *POLYHYDROXYALKANOATES , *BIOCHEMICAL engineering , *BACTERIAL cultures , *COST control - Abstract
Industrial manufacturing of polyhydroxyalkanoates (PHAs) requires purification of PHAs granules from high-cell-density cultures. Cells are broken by homogenization and PHAs granules are cleansed and treated to obtain PHAs latexes. However, cell lysis releases large amounts of DNA which results in an increasing viscosity of the medium, hampering the following downstream steps. Drop in viscosity is generally achieved by costly procedures such as heat treatment or the supplementation of hypochlorite and commercially available nucleases. Searching for a cost-effective solution to this issue, a nuclease gene from Staphylococcus aureus has been integrated into two efficient PHAs-producing bacteria: Cupriavidus necator DSM 545 and Delftia acidovorans DSM 39. Staphylococcal nuclease has been proficiently expressed in both microbial hosts without affecting PHAs production. Moreover, the viscosity of the lysates of recombinant C. necator cells was greatly reduced, indicating that the engineered strain is expected to yield large reduction cost in PHAs downstream processing. [ABSTRACT FROM AUTHOR]
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- 2018
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211. Production, ultrasonic extraction, and characterization of poly (3‐hydroxybutyrate) (PHB) using Bacillus megaterium and Cupriavidus necator.
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Pradhan, Sushobhan, Dikshit, Pritam Kumar, and Moholkar, Vijayanand S.
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POLYHYDROXYBUTYRATE ,BACILLUS megaterium ,POLYMERS ,POLYMER testing ,FERMENTATION ,THERAPEUTICS - Abstract
Biodegradable polymer polyhydroxyalkanoates are one of the promising alternatives for conventional plastics. The present article focuses on a modified and novel method for the synthesis of poly (3‐hydroxybutyrate) (PHB) by two microorganisms, viz. Bacillus megaterium and Cupriavidus necator. These microbial cells were grown over fructose as a carbon source, and the produced PHB was recovered using ultrasound as well as solvent assisted extraction. The extracted PHB was characterized using FTIR,
1 H, and13 C NMR to observe the functional groups in the PHB molecule. The XRD characterization confirmed the partial crystalline nature of PHB, and the results of TGA, DTG, and DSC analysis attributed to the thermal stability of PHB. The major step of weight loss of PHB derived by B. megaterium and C. necator in TGA analysis was found to be 415°C and 289°C, respectively. These values were comparatively higher than standard PHB, for which it is 260°C. Similarly, the maximum degradation temperature for standard PHB is 236°C, whereas the maximum degradation temperature of PHB synthesized by B. megaterium and C. necator are 248°C and 277°C, respectively. This ascertains that the produced PHB has greater resistance to thermal degradation as compared with PHB standard. The melting point of synthesized PHBs were found to be 175°C to 176°C, which is similar to standard PHB. The glass transition temperature of the synthesized PHBs varies from –8°C to 6°C. The plausible reason behind the variances could be due to difference in crystallinity and molecular weight of polymer matrix. Nevertheless, thermal properties of PHB produced by B. megaterium and C. necator are found to be similar or much better than commercial PHB. The degree of crystallinity of synthesized PHBs are lower than previously reported literatures, which extends its range of applications. [ABSTRACT FROM AUTHOR]- Published
- 2018
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212. Direct determination of poly(3-hydroxybutyrate) accumulated in bacteria by thermally assisted hydrolysis and methylation-gas chromatography in the presence of organic alkali.
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Baidurah, Siti, Kubo, Yasuko, Ishida, Yasuyuki, and Yamane, Tsuneo
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POLYHYDROXYBUTYRATE , *NECATOR , *BACTERIAL cells , *HYDROLYSIS , *GLUCOSE , *METHYLATION , *HYDROXIDES , *GAS chromatography - Abstract
There is considerable interest in the development of simple methods for quantifying production of the biodegradable polyester poly(3-hydroxybutyrate) [P(3HB)] by bacteria. Cells of
Cupriavidus necator were grown on agar medium containing different concentrations of glucose (10–25 g/L) as a sole carbon source. Trace amounts (100±5 μg) of driedC. necator cells were directly subjected to thermally assisted hydrolysis and methylation-gas chromatography (THM-GC) in the presence of tetramethylammonium hydroxide (TMAH). On the resulting chromatograms, a series of characteristic peaks, attributed to the THM products from poly(3-hydroxybutylate) accumulated in the bacterial cells, were clearly observed without any interfering component. Based on the peak intensities, the contents of P(3HB) inC. necator were determined precisely and rapidly without using any cumbersome sample pretreatment. Furthermore, the values of the P(3HB) contents coincided overall with those obtained by the conventional method involving solvent extraction followed by gravimetric determination. [ABSTRACT FROM AUTHOR]- Published
- 2018
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213. Toward non-toxic and simple recovery process of poly(3-hydroxybutyrate) using the green solvent 1,3-dioxolane.
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Yabueng, Nuttipon and Napathorn, Suchada Chanprateep
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BUTYRATES , *SOLVENTS , *MOLECULAR weights , *ESTERS , *FLUIDS - Abstract
We aimed to develop a non-toxic and simple recovery procedure for poly(3-hydroxybutyrate) based on the use of green solvent. In this study, 2-methyltetrahydrofuran, 1,3-propanediol, 1,3-dioxolane and ethyl lactate were investigated and compared with chloroform in the extraction of poly(3-hydroxybutyrate) from Cupriavidus necator strain A-04. A water-miscible system was developed using 1,3-dioxolane and water. PHB was extracted from dried cells at 80 °C for 6 h in 1,3-dioxolane then water was used to cause phase separation of PHB film from 1,3-dioxolane solution resulted in the recovery yield 92.7% ± 1.4% and purity up to 97.9% ± 1.8%. The physical properties and molecular weight distribution of the PHB recovered were not significantly affected by the 1,3-dioxolane extraction. The PHB obtained from wet cells by 1,3-dioxolane extraction at 80 °C for 6 h had a M W of 4.86 × 10 5 , M N of 3.74 × 10 5 , polydispersity index of 1.30. The recovery process is non-toxic and very simple, thus reducing purification costs. [ABSTRACT FROM AUTHOR]
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- 2018
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214. Production and optimization of polyhydroxyalkanoates from non-edible Calophyllum inophyllum oil using Cupriavidus necator.
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Arumugam, A., Senthamizhan, S.G., Ponnusami, V., and Sudalai, S.
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CALOPHYLLUM inophyllum , *RESPONSE surfaces (Statistics) , *POLYHYDROXYALKANOATES , *QUADRATIC equations , *EDIBLE fats & oils - Abstract
Polyhydroxyalkanoates (PHA) are biodegradable polymers found in the cellular masses of a wide range of bacterial species and the demand for PHA is steadily growing. In this work we have produced PHA from a low-cost substrate, Calophyllum inophyllum oil, using Cupriavidus necator . Effects of various process parameters such as Oil concentration, Nitrogen source and inoculum size on the production of PHA were studied using Response Surface Methodology. A quadratic equation was used in the model to fit the experimental data. It was found that the model could satisfactorily predict the PHA yield (R 2 = 99.17%). Linear, quadratic and interaction terms used in the model were found to be statistically significant. Maximum PHA yield of 10.6 g L −1 was obtained under the optimized conditions of oil concentration - 17.5%, inoculum concentration - 50 mL/L and nitrogen content - 1.125 g L −1 , respectively. The product obtained was characterized using FTIR and NMR to confirm that it was PHA. The results demonstrate that C. inophyllum oil, a non-edible oil, can be potentially used as a low-cost substrate for the production of PHA. [ABSTRACT FROM AUTHOR]
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- 2018
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215. Cheese whey integrated valorisation: Production, concentration and exploitation of carboxylic acids for the production of polyhydroxyalkanoates by a fed-batch culture.
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Domingos, Joana M.B., Puccio, Salvatore, Martinez, Gonzalo A., Amaral, Natacha, Reis, Maria A.M., Bandini, Serena, Fava, Fabio, and Bertin, Lorenzo
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POLYHYDROXYALKANOATES , *CARBOXYLIC acids , *ELECTRODIALYSIS , *ANAEROBIC reactors , *FATTY acids - Abstract
The present work aimed to verify the feasibility of producing polyhydroxyalkanoates (PHAs) at high concentrations from an alternative and cheap carbon source such as the carboxylic acids (VFAs) obtained by the anaerobic fermentation of cheese whey (CW). An electrodialysis (ED) step was proposed for the obtainment of a concentrated acidic stream, suitable for being employed as feeding solution in the consecutive fed-batch culture system for PHAs production. Experiments conducted in duplicate shown that a packed bed anaerobic bioreactor resulted a robust and high repeatable culture system for a high performing continuous production of VFAs from CW. The acidogenic effluent contained 12.55 ± 1.10 g L −1 of carboxylic acids ( ca. 90% of the effluent soluble COD), including the hexanoic (4.13 ± 0.56 g L −1 ) and octanoic (3.12 ± 0.94 g L −1 ) acids. The application of 7 sequential batch ED processes allowed to obtain a carboxylic acids concentrated stream ( ca. 63 g L −1 ); by the achievement of high molar flow. Finally, this stream was utilized as the feeding solution in a fed-batch fermentation aimed to produce PHAs. The attained PHAs yield ( ca. 0.60 g PHAs g VFAs −1 ) was comparable to that obtained in a parallel test accomplished with a VFAs-water simulating solution and also to those previously reported from pure VFAs; i.e. no inhibition effects due to the employment of an actual biowaste as the feedstock were detected. As a whole, the results allow to conclude that the proposed integrated valorisation scheme fed with CW for the production of PHAs by an ED-concentrated carboxylic acids solution is technically feasible and robust. [ABSTRACT FROM AUTHOR]
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- 2018
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216. Model of acetic acid-affected growth and poly(3-hydroxybutyrate) production by Cupriavidus necator DSM 545.
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Marudkla, Jaruwan, Lee, Wen-Chien, Wannawilai, Siwaporn, Chisti, Yusuf, and Sirisansaneeyakul, Sarote
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POLYHYDROXYBUTYRATE , *BACTERIAL growth , *FERMENTATION , *ACETIC acid , *CENCHRUS purpureus , *GLUCOSE - Abstract
Acetic acid, a potential growth inhibitor, commonly occurs in lignocellulosic hydrolysates. The growth of Cupriavidus necator DSM 545 and production of poly(3-hydroxybutyrate) (PHB) by this bacterium in a glucose-based medium supplemented with various initial concentrations of acetic acid are reported. The bacterium could use both glucose and acetic acid to grow and produce PHB, but acetic acid inhibited growth once its initial concentration exceeded 0.5 g/L. As acetic acid is an unavoidable contaminant in hydrolysates used as sugar sources in commercial fermentations, a mathematical model was developed to describe its impact on growth and the production of PHB. The model was shown to satisfactorily apply to growth and PHB production data obtained in media made with acetic-acid-containing hydrolysates of Napier grass and oil palm trunk as carbon substrates. [ABSTRACT FROM AUTHOR]
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- 2018
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217. Biorefinery production of poly-3-hydroxybutyrate using waste office paper hydrolysate as feedstock for microbial fermentation.
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Neelamegam, Annamalai, Al-Battashi, Huda, Al-Bahry, Saif, and Nallusamy, Sivakumar
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POLY-beta-hydroxybutyrate , *WASTE paper , *FERMENTATION , *HYDROLYSIS , *FEEDSTOCK - Abstract
Waste paper, a major fraction of municipal solid waste, has a potential to serve as renewable feedstock for the biorefineries of fuels, chemicals and materials due to rich in cellulose and abundant at low cost. This study evaluates the possibility of waste office paper (WOP) to serve as a potential feedstock for the biorefinery production of poly (3-hydroxybutyrate). In this study, the WOP was pretreated, enzymatically saccharified and the hydrolysate was used for PHB production. The hydrolysate mainly consists of glucose (22.70 g/L) and xylose (1.78 g/L) and the corresponding sugar yield was about 816 mg/g. Ammonium sulphate and C/N ratio 20 were identified as most favorable for high yield of PHB. The batch fermentation of Cupriavidus necator using the pretreated WOP hydrolysate resulted in cell biomass, PHB production and PHB content of 7.74 g/L, 4.45 g/L and 57.52%, respectively. The volumetric productivity and yield achieved were 0.061 g/L/h and 0.210 g/g sugar, respectively. The results suggested that WOP could be a potential alternative feedstock for the biorefinery production of bioplastics. [ABSTRACT FROM AUTHOR]
- Published
- 2018
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218. An integrative study on biologically recovered polyhydroxyalkanoates (PHAs) and simultaneous assessment of gut microbiome in yellow mealworm.
- Author
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Ong, Su Yean, Kho, Hui-Pheng, Riedel, Sebastian L., Kim, Seok-Won, Gan, Chee-Yuen, Taylor, Todd D., and Sudesh, Kumar
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MEAL worms , *POLYHYDROXYALKANOATES , *GUT microbiome , *POLYMERS , *METAGENOMICS - Abstract
Polyhydroxyalkanoates (PHAs) are produced in microbes as a source of carbon and energy storage. They are biodegradable and have properties similar to synthetic plastics, which make them an interesting alternative to petroleum-based plastics. In this study, a refined method of recovering PHA from Cupriavidus necator biomass was proposed by incorporating the use of the yellow mealworm (the larval phase of the mealworm beetle, Tenebrio molitor ) as partial purification machinery, followed by washing of the fecal pellets with distilled water and sodium hydroxide. The PHA contents of the cells used in this study were 55 wt% (produced from palm olein) and 60 wt% (produced from waste animal fats). The treatment of distilled water and NaOH further increased the purity of PHA to 94%. In parallel, analysis of the 16S rRNA metagenomic sequencing of the mealworm gut microbiome has revealed remarkable changes in the bacterial diversity, especially between the mealworms fed with cells produced from palm olein and waste animal fats. This biological recovery of PHA from cells is an attempt to move towards a green and sustainable process with the aim of reducing the use of harmful solvents and strong chemicals during polymer purification. The results obtained show that – purities of >90%, without a reduction in the molecular weight, can be obtained through this integrative biological recovery approach. In addition, this study has successfully shown that the cells, regardless of their origins, were readily consumed by the mealworms, and there is a correlation between the feed type and the mealworm gut microbiome. [ABSTRACT FROM AUTHOR]
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- 2018
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219. Partial Consensus Design and Enhancement of Protein Function by Secondary-Structure-Guided Consensus Mutations
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Yasuhisa Asano, Shogo Nakano, Kohei Kozuka, and Sohei Ito
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Models, Molecular ,Functional analysis ,Protein Stability ,Chemistry ,Protein design ,Temperature ,Computational biology ,Crystallography, X-Ray ,Protein Engineering ,Biochemistry ,Protein Structure, Secondary ,Alcohol Oxidoreductases ,Protein sequencing ,Bacterial Proteins ,Mutagenesis ,Consensus Sequence ,Mutation ,Consensus sequence ,Cupriavidus necator ,Target protein ,Protein secondary structure ,Thermostability ,Sequence (medicine) - Abstract
Consensus design (CD) is a representative sequence-based protein design method that enables the design of highly functional proteins by analyzing vast amounts of protein sequence data. This study proposes a partial consensus design (PCD) of a protein as a derivative approach of CD. The method replaces the target protein sequence with a consensus sequence in a secondary-structure-dependent manner (i.e., regionally dependent and divided into α-helix, β-sheet, and loop regions). In this study, we generated several artificial partial consensus l-threonine 3-dehydrogenases (PcTDHs) by PCD using the TDH from Cupriavidus necator (CnTDH) as a target protein. Structural and functional analysis of PcTDHs suggested that thermostability would be independently improved when consensus mutations are introduced into the loop region of TDHs. On the other hand, enzyme kinetic parameters (kcat/Km) and average productivity would be synergistically enhanced by changing the combination of the mutations-replacement of one region of CnTDH with a consensus sequence provided only negative effects, but the negative effects were nullified when the two regions were replaced simultaneously. Taken together, we propose the hypothesis that there are protein regions that encode individual protein properties, such as thermostability and activity, and that the introduction of consensus mutations into these regions could additively or synergistically modify their functions.
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- 2021
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220. Engineering of Shewanella marisflavi BBL25 for biomass-based polyhydroxybutyrate production and evaluation of its performance in electricity production
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Jeong-Jun Yoon, Ranjit Gurav, Hong-Ju Lee, Yung-Hun Yang, Sion Ham, Sun Mi Lee, Jae Seok Kim, Kwon-Young Choi, Sang Ho Lee, Sang Hyun Kim, Min Ju Suh, Jong-Min Jeon, Jang Yeon Cho, Hun-Suk Song, and Shashi Kant Bhatia
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Shewanella ,Microbial fuel cell ,Hydroxybutyrates ,Biomass ,Lignocellulosic biomass ,02 engineering and technology ,Biochemistry ,Polyhydroxyalkanoates ,Polyhydroxybutyrate ,03 medical and health sciences ,Bacterial Proteins ,Ralstonia ,Structural Biology ,Food science ,Molecular Biology ,030304 developmental biology ,0303 health sciences ,biology ,Chemistry ,Hydrolysis ,Galactose ,Hordeum ,General Medicine ,021001 nanoscience & nanotechnology ,biology.organism_classification ,Cupriavidus necator ,Biodegradable plastic ,Genetic Engineering ,0210 nano-technology ,Plasmids - Abstract
Polyhydroxybutyrate (PHB) is a biodegradable plastic with physical properties similar to petrochemically derived plastics. Here, Shewanella marisflavi BBL25 was engineered by inserting the pLW487 vector containing polyhydroxyalkanoates synthesis genes from Ralstonia eutropha H16. Under optimal conditions, the engineered S. marisflavi BBL25 produced 1.99 ± 0.05 g/L PHB from galactose. The strain showed high tolerance to various inhibitors and could utilize lignocellulosic biomass for PHB production. When barley straw hydrolysates were used as a carbon source, PHB production was 3.27 ± 0.19 g/L. In addition, PHB production under the microbial fuel cell system was performed to confirm electricity coproduction. The maximum electricity current output density was 1.71 mA/cm2, and dry cell weight (DCW) and PHB production were 11.4 g/L and 6.31 g/L, respectively. Our results demonstrated PHB production using various lignocellulosic biomass and the feasibility of PHB and electricity production, simultaneously, and it is the first example of PHB production in engineered Shewanella.
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- 2021
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221. Properties of degradable polyhydroxyalkanoates with different monomer compositions
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Evgeniy G. Kiselev, G. Ryltseva, Ekaterina I. Shishatskaya, Tatiana G. Volova, A. G. Sukovatyi, Ivan V. Nemtsev, Andrey Kuzmin, and А. Lukyanenko
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Surface Properties ,Dispersity ,02 engineering and technology ,Biochemistry ,Polyhydroxyalkanoates ,law.invention ,03 medical and health sciences ,chemistry.chemical_compound ,Crystallinity ,Structural Biology ,law ,Copolymer ,Crystallization ,Molecular Biology ,030304 developmental biology ,chemistry.chemical_classification ,0303 health sciences ,Chemistry ,General Medicine ,Polymer ,021001 nanoscience & nanotechnology ,Monomer ,Chemical engineering ,Cupriavidus necator ,0210 nano-technology ,Glass transition - Abstract
Purpose To synthesize and investigate polyhydroxyalkanoates (PHAs) with different monomer composition and percentages and polymer films prepared from them. Results Various PHAs: homopolymer poly-3-hydroxybutyrate P(3HB) and 2-, 3-, and 4-component copolymers comprising various combinations of 3-hydroxybutyrate (3HB), 3-hydroxyvalerate (3HV), 4-hydroxybutyrate (4HB), and 3-hydroxyhexanoate (3HHx) monomers were synthesized under specialized conditions. Relationships were found between the monomer composition of PHAs and their molecular-weight and thermal properties and degree of crystallinity. All copolymers had decreased weight average molecular weights, Mw (to 390–600 kDa), and increased values of polydispersity (3.2–4.6) compared to the P(3HB). PHA copolymers showed different thermal behavior: an insignificant decrease in Tmelt and the presence of the second peak in the melting region and changes in parameters of crystallization and glass transition. At the same time, they retained thermostability, and the difference between Tmelt and Tdegr was at least 100–120 °C. Incorporation of 4HB, 3HV, and 3HHx monomer units into the 3-hydroxybutyrate chain caused changes in the amorphous to crystalline ratio and decreased the degree of crystallinity (Cx) to 20–40%. According to the degree to which the monomers reduced crystallinity, they were ranked as follows: 4HB – 3HHx – 3HV. A unique set of films was produced; their surface properties and physical/mechanical properties were studied as dependent on PHA composition; monomers other than 3-hydroxybutyrate were found to enhance hydrophilicity, surface development, and elasticity of polymer films. Conclusion An innovative set of PHA copolymers was synthesized and solution-cast films were prepared from them; the copolymers and films were investigated as dependent on polymer chemical composition. Results obtained in the present study contribute to the solution of a critical issue of producing degradable polymer materials.
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- 2021
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222. Polyhydroxyalkanoate synthesis from primitive components of organic solid waste: Comparison of dominant strains and improvement of metabolic pathways.
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Chen, Shuxian, Dai, Xiaohu, Yang, Donghai, Dai, Lingling, and Hua, Yu
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- *
ORGANIC wastes , *SOLID waste , *AMINOBUTYRIC acid , *PROPIONIC acid , *AMINO acids , *LACTIC acid - Abstract
[Display omitted] • The improvement of PHA metabolic pathways in C. necator and B. cereus were studied. • C. necator has better PHA synthesis ability and substrate versatility than B. cereus. • Lactate has active amino acid pathway and aminobutyric acid pathway in PHA synthesis. • PHA was inhibited by the carbon competition or limited by the amount of acetyl-CoA. • This study enhances the understanding of PHA synthesis of organic solid waste. The production of polyhydroxyalkanoate (PHA) from organic solid waste is a research hotspot. However, the allocation and conversion mechanism of different carbon resources between precursor routes and PHA metabolism remains unclear. We compared the PHA synthesis of dominant functional bacteria, Cupriavidus necator (C. necator) and Bacillus cereus (B. cereus), and replenished the metabolic pathways of primitive components (glucose, glycerin, lactic acid and propionic acid). The results showed that the PHA accumulation ability of C. necator (11.8%∼36.5%) was better than that of B. cereus (10.1%∼24.5%). C. necator had a faster rate of cell growth and PHA synthesis than B. cereus , which showed advantages in production efficiency. Most of the carbon of glucose flowed to the direct poly-3-hydroxybutyrate synthesis pathway. The carbon competition inhibited the PHA production from glycerin in C. necator, and cysteine metabolism was an effective pathway for poly(3-hydroxybutyrate-co-3-hydroxyvalerate) synthesis in B. cereus. There were active amino acid pathway and aminobutyric acid pathway in the utilization of lactic acid in C. necator and B. cereus , respectively. The yield of copolymer was limited by acetyl-CoA in propionic acid system. This study laid the foundation for exploring the PHA synthesis from the components of organic solid waste. [ABSTRACT FROM AUTHOR]
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- 2023
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223. Production of N-acetylglucosamine from carbon dioxide by engineering Cupriavidus necator H16.
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Wang, Xiaolu, Chang, Fangfang, Wang, Tingting, Luo, Huiying, Su, Xiaoyun, Tu, Tao, Wang, Yuan, Bai, Yingguo, Qin, Xing, Zhang, Honglian, Wang, Yaru, Yao, Bin, Huang, Huoqing, and Zhang, Jie
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- *
CARBON dioxide , *N-acetylglucosamine , *GREENHOUSE effect , *POLY-beta-hydroxybutyrate , *CAENORHABDITIS elegans , *ENGINEERING - Abstract
[Display omitted] • Conversion of CO 2 to GlcNAc was achieved for the first time by engineered C. necator. • GlcNAc biosynthetic pathway was constructed by expression of Cegna1 *. • PHB synthesis pathway and ED pathway disruption increased the production of GlcNAc. • The maximum GlcNAc titer from CO 2 reached 75.3 mg/L. The conversion of CO 2 into valuable bioactive substances using synthetic biological techniques is a potential approach for mitigating the greenhouse effect. Here, the engineering of C. necator H16 to produce N -acetylglucosamine (GlcNAc) from CO 2 is reported. First, GlcNAc importation and intracellular metabolic pathways were disrupted by the deletion of nagF , nagE , nagC , nagA and nagB genes. Second, the GlcNAc-6-phosphate N -acetyltransferase gene (gna1) was screened. A GlcNAc-producing strain was constructed by overexpressing a mutant gna1 from Caenorhabditis elegans. A further increase in GlcNAc production was achieved by disrupting poly(3-hydroxybutyrate) biosynthesis and the Entner–Doudoroff pathways. The maximum GlcNAc titers were 199.9 and 566.3 mg/L for fructose and glycerol, respectively. Finally, the best strain achieved a GlcNAc titer of 75.3 mg/L in autotrophic fermentation. This study demonstrated a conversion of CO 2 to GlcNAc, thereby providing a feasible approach for the biosynthesis of various bioactive chemicals from CO 2 under normal conditions.. [ABSTRACT FROM AUTHOR]
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- 2023
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224. Upgrading Kolbe electrolysis – Highly efficient production of green fuels and solvents by coupling biosynthesis and electrosynthesis
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Teetz, N., Holtmann, D., Harnisch, Falk, Stöckl, M., Teetz, N., Holtmann, D., Harnisch, Falk, and Stöckl, M.
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The chemical industry is transitioning to more sustainable and biobased processes. One key element of this transition is coupling energy fluxes and feedstock utilization for optimizing processes, routes and efficiencies. Here, we show for the first time the coupling of the Kolbe electrolysis at the anode with a subsequent microbial conversion of the cathodically produced co-product hydrogen. Kolbe electrolysis of valeric acid yields the liquid drop-in fuel additive n-octane. Subsequently, the solvent isopropanol is produced by resting Cupriavidus necator cells using gaseous electrolysis products (esp. CO2 and H2). The resting microbial cells show carbon efficiencies of up to 41% and coulombic/faradaic efficiencies of 60% and 80% for anodic and cathodic reactions, respectively. The implementation of a paired electrolyzer resulted in superior process performances with overall efficiencies of up to 64.4%.
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- 2022
225. Hydrogen Oxidizing Bacteria as Novel Protein Source for Human Consumption : An Overview
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Angenent, Suzanne C., Schuttinga, Josje H., van Efferen, Merel F.H., Kuizenga, Boaz, van Bree, Bart, van der Krieken, Robin O., Verhoeven, Tim J., Wijffels, Rene H., Angenent, Suzanne C., Schuttinga, Josje H., van Efferen, Merel F.H., Kuizenga, Boaz, van Bree, Bart, van der Krieken, Robin O., Verhoeven, Tim J., and Wijffels, Rene H.
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The increasing threat of climate change combined with the prospected growth in the world population puts an enormous pressure on the future demand for sustainable protein sources for human consumption. In this review, hydrogen oxidizing bacteria (HOB) are presented as a novel protein source that could play a role in fulfilling this future demand. HOB are species of bacteria that merely require an inflow of the gasses hydrogen, oxygen, carbon dioxide, and a nitrogen source to grow in a conventional bioreactor. Cupriavidus necator is proposed as HOB for industrial cultivation due to its remarkably high protein content (up to 70% of mass), suitability for cultivation in a bioreactor, and the vast amount of available background information. A broad overview of the unique aspects of the bacteria will be provided, from the production process, amino acid composition, and source of the required gasses to the future acceptance of HOB into the market.
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- 2022
226. Updated list of QPS-recommended biological agents for safety risk assessments carried out by EFSA
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EFSA BIOHAZ Panel, Koutsoumanis, Konstantinos, Allende, Ana, Álvarez-Ordóñez, Avelino, Bolton, Declan, Bover-Cid, Sara, Chemaly, Marianne, Davies, Robert, De Cesare, Alessandra, Hilbert, Friederike, Lindqvist, Roland, Nauta, Maarten, Peixe, Luisa, Ru, Giuseppe, Simmons, Marion, Skandamis, Panagiotis, Suffredini, Elisabetta, Cocconcelli, Pier Sandro, Fernández Escámez, Pablo Salvador, Prieto Maradona, Miguel, Querol, Amparo, Sijtsma, Lolke, Suárez Fernández, Juan Evaristo, Sundh, Ingvar, Vlak, Just M., Barizzone, Fulvio, Hempen, Michaela, Correia, Sandra, Herman, Lieve, EFSA BIOHAZ Panel, Koutsoumanis, Konstantinos, Allende, Ana, Álvarez-Ordóñez, Avelino, Bolton, Declan, Bover-Cid, Sara, Chemaly, Marianne, Davies, Robert, De Cesare, Alessandra, Hilbert, Friederike, Lindqvist, Roland, Nauta, Maarten, Peixe, Luisa, Ru, Giuseppe, Simmons, Marion, Skandamis, Panagiotis, Suffredini, Elisabetta, Cocconcelli, Pier Sandro, Fernández Escámez, Pablo Salvador, Prieto Maradona, Miguel, Querol, Amparo, Sijtsma, Lolke, Suárez Fernández, Juan Evaristo, Sundh, Ingvar, Vlak, Just M., Barizzone, Fulvio, Hempen, Michaela, Correia, Sandra, and Herman, Lieve
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The “list of microorganisms with QPS status” first established in 2007, has been revised and updated annually until 2014 via QPS Opinions; since 2014 the updates are carried out and published every 3 years. If new information is retrieved from extended literature searches (ELS) that would change the QPS status of a TU or its qualifications, this is also published in the Panel Statement covering the previous 6-months period. The ELS protocol can be found at https://doi.org/10.5281/zenodo.3607190 and the Search strategies are available at: https://doi.org/10.5281/zenodo.3607193. The QPS Panel Statement also includes the evaluation of microbiological agents notified to EFSA within the 6-month period for an assessment for feed additives, food enzymes, food additives and flavourings, and novel foods or plant protection products for a possible QPS status. The new QPS status recommendations are incorporated into the 2019 updated “list of microorganisms with QPS status” is available in this upload. The list of “Microbiological agents as notified to EFSA” from 2007, in the context of technical dossiers to EFSA Units, for intentional use in feed and/or food or as sources of food and feed additives, enzymes and plant protection products (PPPs) for safety assessment can be found at https://doi.org/10.5281/zenodo.3607184.
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- 2022
227. Phylogenetic Diversity and Evolution of Predatory Prokaryotes
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Jurkevitch, Edouard, Davidov, Yaacov, and Jurkevitch, Edouard, editor
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- 2007
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228. Evolution of Catabolic Pathways in Pseudomonas Through Gene Transfer
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van der Meer, Jan Roelof, Ramos, Juan-Luis, editor, and Levesque, Roger C., editor
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- 2006
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229. Minimal Influence of [NiFe] Hydrogenase on Hydrogen Isotope Fractionation in H2-Oxidizing Cupriavidus necator
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Brian J. Campbell, Alex L. Sessions, Daniel N. Fox, Blair G. Paul, Qianhui Qin, Matthias Y. Kellermann, and David L. Valentine
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Cupriavidus necator ,hydrogenase ,hydrogen isotope ,D/H ,fatty acid ,autotrophic metabolism ,Microbiology ,QR1-502 - Abstract
Fatty acids produced by H2-metabolizing bacteria are sometimes observed to be more D-depleted than those of photoautotrophic organisms, a trait that has been suggested as diagnostic for chemoautotrophic bacteria. The biochemical reasons for such a depletion are not known, but are often assumed to involve the strong D-depletion of H2. Here, we cultivated the bacterium Cupriavidus necator H16 (formerly Ralstonia eutropha H16) under aerobic, H2-consuming, chemoautotrophic conditions and measured the isotopic compositions of its fatty acids. In parallel with the wild type, two mutants of this strain, each lacking one of two key hydrogenase enzymes, were also grown and measured. In all three strains, fractionations between fatty acids and water ranged from -173‰ to -235‰, and averaged -217‰, -196‰, and -226‰, respectively, for the wild type, SH- mutant, and MBH- mutant. There was a modest increase in δD as a result of loss of the soluble hydrogenase enzyme. Fractionation curves for all three strains were constructed by growing parallel cultures in waters with δDwater values of approximately -25‰, 520‰, and 1100‰. These curves indicate that at least 90% of the hydrogen in fatty acids is derived from water, not H2. Published details of the biochemistry of the soluble and membrane-bound hydrogenases confirm that these enzymes transfer electrons rather than intact hydride (H-) ions, providing no direct mechanism to connect the isotopic composition of H2 to that of lipids. Multiple lines of evidence thus agree that in this organism, and presumably others like it, environmental H2 plays little or no direct role in controlling lipid δD values. The observed fractionations must instead result from isotope effects in the reduction of NAD(P)H by reductases with flavin prosthetic groups, which transfer two electrons and acquire H+ (or D+) from solution. Parallels to NADPH reduction in photosynthesis may explain why D/H fractionations in C. necator are nearly identical to those in many photoautotrophic algae and bacteria. We conclude that strong D-depletion is not a diagnostic feature of chemoautotrophy.
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- 2017
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230. Biosynthesis of P(3HB-co-3HHx) Copolymers by a Newly Engineered Strain of Cupriavidus necator PHB−4/pBBR_CnPro-phaCRp for Skin Tissue Engineering Application
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Chanaporn Trakunjae, Kumar Sudesh, Soon Zher Neoh, Antika Boondaeng, Waraporn Apiwatanapiwat, Phornphimon Janchai, and Pilanee Vaithanomsat
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Polymers and Plastics ,General Chemistry ,polyhydroxyalkanoates ,PHA synthase ,PhaC ,3-hydroxyhexanoate ,Rhodococcus ,Cupriavidus necator ,crude palm kernel oil ,skin tissue engineering - Abstract
Polyhydroxyalkanoates (PHAs) are biodegradable polymers synthesized by certain bacteria and archaea with functions comparable to conventional plastics. Previously, our research group reported a newly PHA-producing bacterial strain, Rhodococcus pyridinivorans BSRT1-1, from the soil in Thailand. However, this strain’s PHA synthase (phaCRp) gene has not yet been characterized. Thus, this study aims to synthesize PHA using a newly engineered bacterial strain, Cupriavidus necator PHB−4/pBBR_CnPro-phaCRp, which harbors the phaCRp from strain BSRT1-1, and characterize the properties of PHA for skin tissue engineering application. To the best of our knowledge, this is the first study on the characterization of the PhaC from R. pyridinivorans species. The results demonstrated that the expression of the phaCRp in C. necator PHB−4 had developed in PHA production up to 3.1 ± 0.3 g/L when using 10 g/L of crude palm kernel oil (CPKO) as a sole carbon source. Interestingly, the engineered strain produced a 3-hydroxybutyrate (3HB) with 2 mol% of 3-hydroxyhexanoate (3HHx) monomer without adding precursor substrates. In addition, the 70 L stirrer bioreactor improved P(3HB-co-2 mol% 3HHx) yield 1.4-fold over the flask scale without altering monomer composition. Furthermore, the characterization of copolymer properties showed that this copolymer is promising for skin tissue engineering applications.
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- 2022
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231. Engineering Cupriavidus necator H16 for enhanced lithoautotrophic poly(3-hydroxybutyrate) production from CO
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Soyoung, Kim, Yong Jae, Jang, Gyeongtaek, Gong, Sun-Mi, Lee, Youngsoon, Um, Kyoung Heon, Kim, and Ja Kyong, Ko
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3-Hydroxybutyric Acid ,Hydroxybutyrates ,Cupriavidus necator ,Carbon Dioxide - Abstract
A representative hydrogen-oxidizing bacterium Cupriavidus necator H16 has attracted much attention as hosts to recycle carbon dioxide (COHere, we engineer the carbon fixation metabolism to improve COThe global transcriptional regulator RegA plays an important role in the regulation of carbon fixation and shows the possibility to improve autotrophic cell growth and PHB accumulation by increasing its expression level. This work represents another step forward in better understanding and improving the lithoautotrophic PHB production by C. necator H16.
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- 2022
232. Metabolic engineering of Cupriavidus necator H16 for heterotrophic and autotrophic production of 3-hydroxypropionic acid
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Alejandro Salinas, Callum McGregor, Victor Irorere, Christian Arenas-López, Rajesh Reddy Bommareddy, Klaus Winzer, Nigel P. Minton, and Katalin Kovács
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Metabolic Engineering ,Polymers ,Bioengineering ,Cupriavidus necator ,Oxidoreductases ,Applied Microbiology and Biotechnology ,Carbon ,Biotechnology - Abstract
3-Hydroxypropionate (3-HP) is a versatile compound for chemical synthesis and a potential building block for biodegradable polymers. Cupriavidus necator H16, a facultative chemolithoautotroph, is an attractive production chassis and has been extensively studied as a model organism for biopolymer production. Here, we engineered C. necator H16 for 3-HP biosynthesis from its central metabolism. Wild type C. necator H16 can use 3-HP as a carbon source, a highly undesirable trait for a 3-HP production chassis. However, deletion of its three (methyl-)malonate semialdehyde dehydrogenases (mmsA1, mmsA2 and mmsA3) resulted in a strain that cannot grow on 3-HP as the sole carbon source, and this strain was selected as our production host. A stepwise approach was used to construct pathways for 3-HP production via β-alanine. Two additional gene deletion targets were identified during the pathway construction process. Deletion of the 3-hydroxypropionate dehydrogenase, encoded by hpdH, prevented the re-consumption of the 3-HP produced by our engineered strains, while deletion of gdhA1, annotated as a glutamate dehydrogenase, prevented the utilization of aspartate as a carbon source, one of the key pathway intermediates. The final strain carrying these deletions was able to produce up to 8 mM 3-HP heterotrophically. Furthermore, an engineered strain was able to produce 0.5 mM 3-HP under autotrophic conditions, using CO
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- 2022
233. Produção e caracterização de polihidroxialcanoatos obtidos por fermentação da glicerina bruta residual do biodiesel
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Tamiris V. B. Figueiredo, Márcio I. Campos, Luciane S. Sousa, Jaff R. da Silva, and Janice I. Druzian
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polyhydroxyalkanoates ,Cupriavidus necator ,fermentation ,crude glycerin ,biodiesel ,Chemistry ,QD1-999 - Abstract
The aim of this study was to evaluate the production of polyhydroxyalkanoates (PHAs) by fermentation of Crude Glycerin, a byproduct of the biodiesel industry, by Cupriavidus necator IPT 026, 027 and 028. The influence of fermentation time and temperature in shake flasks were evaluated. The highest PHA production (2.82 g L-1) occurred at 35 ºC for 72 h of fermentation. The melting and initial thermal degradation temperatures of this PHA were 177.9 ºC and 306.33 ºC, respectively, with 55% crystallinity. FTIR spectrum was similar to those reported in literature. The polymer obtained presented three different methyl esters of hydroxyalkanoates in its composition, with molecular weight of 630 kDa. Bacteria can use Crude Glycerin as an inexpensive substrate to produce value-added biodegradable products, such as PHA.
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- 2014
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234. Screening of the strictly xylose-utilizing Bacillus sp. SM01 for polyhydroxybutyrate and its co-culture with Cupriavidus necator NCIMB 11599 for enhanced production of PHB
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Ranjit Gurav, Jang Yeon Cho, Eun Yeol Lee, Min Ju Suh, Shashi Kant Bhatia, Sang Hyun Kim, Sion Ham, Hong-Ju Lee, Jong-Min Jeon, Jeong-Jun Yoon, Yung-Hun Yang, and Sun Mi Lee
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Time Factors ,Cupriavidus necator ,Hydroxybutyrates ,Lignocellulosic biomass ,Bacillus ,macromolecular substances ,02 engineering and technology ,Xylose ,Biochemistry ,Polyhydroxybutyrate ,03 medical and health sciences ,chemistry.chemical_compound ,Ralstonia ,Structural Biology ,RNA, Ribosomal, 16S ,Food science ,Pentanoic Acids ,Sugar ,Molecular Biology ,030304 developmental biology ,0303 health sciences ,Halomonas ,Calorimetry, Differential Scanning ,biology ,Chemistry ,fungi ,technology, industry, and agriculture ,Drug Resistance, Microbial ,General Medicine ,021001 nanoscience & nanotechnology ,biology.organism_classification ,Coculture Techniques ,lipids (amino acids, peptides, and proteins) ,Biodegradable plastic ,0210 nano-technology - Abstract
Polyhydroxybutyrate (PHB) is a biodegradable plastic that can be used as an alternative to petrochemical-based plastics. PHB is produced by various microorganisms such as Ralstonia, Halomonas, and Bacillus species. However, there are very few strains that produce PHB using xylose, an abundant and inexpensive carbon source. In this study, ten xylose-utilizing PHB producers isolated from South Korean marine environments were screened and characterized. Among these isolates, Bacillus sp. SM01, a newly identified strain, produced the highest amount of PHB using xylose. Under optimal conditions, the maximum dry cell weight (DCW) was 3.41 ± 0.09 g/L, with 62% PHB content, and Bacillus sp. SM01 showed Poly (3-hydroxybutyrate-co-3-hydroxyvalerate) copolymer production with propionate; however, the growth of Bacillus sp. SM01 was greatly inhibited by the presence of glucose. Co-culturing Bacillus sp. SM01 with Cupriavidus necator NCIMB 11599 resulted in increased DCW, PHB production, and utilization of glucose and xylose, the main sugar of lignocellulosic biomass, compared with the monoculture. Our results indicated that this co-culture system can be used to increase PHB production and overcome the limitation of sugar consumption associated with Bacillus sp. SM01 and C. necator.
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- 2021
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235. Gram‐scale production of the sesquiterpene α‐humulene with Cupriavidus necator
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Sofia Milker, Dirk Holtmann, Lea Kranz, Ljubov Tkatschuk, Anne Sydow, Ingrid Torres-Monroy, Guido Jach, and Frederik Faust
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biology ,Humulene ,Chemistry ,Cupriavidus necator ,Heterotroph ,Bioengineering ,biology.organism_classification ,Sesquiterpene ,Applied Microbiology and Biotechnology ,Terpenoid ,Monocyclic Sesquiterpenes ,Terpene ,chemistry.chemical_compound ,Batch Cell Culture Techniques ,Food science ,Autotroph ,Myxococcus xanthus ,Biotechnology - Abstract
Terpenoids have an impressive structural diversity and provide valuable substances for a variety of industrial applications. Among terpenes, the sesquiterpenes (C15 ) are the largest subclass with bioactivities ranging from aroma to health promotion. In this article, we show a gram-scale production of the sesquiterpene α-humulene in final aqueous concentrations of 2 g L-1 with the recombinant strain Cupriavidus necator pKR-hum in a fed-batch mode on fructose as carbon source and n-dodecane as an extracting organic phase for in situ product removal. Since C. necator is capable of both heterotrophic and autotrophic growth, we additionally modeled the theoretically possible yields of a heterotrophic versus an autotrophic process on CO2 in industrially relevant quantities. We compared the cost-effectiveness of both processes based on a production of 10 t α-humulene per year, with both processes performing equally with similar costs and gains. Furthermore, the expression and activity of 3-hydroxymethylglutaryl-CoA reductase (hmgR) from Myxococcus xanthus was identified as the main limitation of our constructed C. necator pKR-hum strain. Thus, we outlined possible solutions for further improvement of our production strain, for example, the replacement of the hmgR from M. xanthus by a plant-based variant to increase α-humulene production titers in the future.
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- 2021
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236. Brewer’s spent grain as a no-cost substrate for polyhydroxyalkanoates production: Assessment of pretreatment strategies and different bacterial strains
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Stanislav Obruca, Carlos Corchado-Lopo, Oscar Martínez-Avila, Dan Kucera, Elisabet Marti, Sergio Ponsá, Laia Llenas, Anna Maria Busquets, Jordi Llimós, and Universitat de Vic - Universitat Central de Catalunya. CT BETA
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0106 biological sciences ,Cupriavidus necator ,Bacillus cereus ,Bioengineering ,Burkholderia cepacia ,Raw material ,Hydrolysate ,01 natural sciences ,Polyhydroxyalkanoates ,03 medical and health sciences ,010608 biotechnology ,Enzymatic hydrolysis ,Lignocellulosic material ,Food science ,Molecular Biology ,030304 developmental biology ,Residus ,0303 health sciences ,Lignocel·lulosa ,biology ,business.industry ,Chemistry ,Pretreatments ,General Medicine ,Hidrolitzat ,Biodegradation ,biology.organism_classification ,Waste valorization ,Polihidroxialcanats ,Brewing ,Edible Grain ,business ,Biotechnology - Abstract
Polyhydroxyalkanoates (PHAs) are polyesters of significant interest due to their biodegradability and properties similar to petroleum-derived plastics, as well as the fact that they can be produced from renewable sources such as by-product streams. In this study, brewer’s spent grain (BSG), the main by-product of the brewing industry, was subjected to a set of physicochemical pretreatments and their effect on the release of reducing sugars (RS) was evaluated. The RS obtained were used as a substrate for further PHA production in Burkholderia cepacia, Bacillus cereus, and Cupriavidus necator in liquid cultures. Although some pretreatments proved efficient in releasing RS (acidthermal pretreatment up to 42.1 gRS L-1 and 0.77 gRS g-1 dried BSG), the generation of inhibitors in such scenarios likely affected PHA production compared with the process run without pretreatment (direct enzymatic hydrolysis of BSG). Thus, the maximum PHA accumulation from BSG hydrolysates was found in the reference case with 0.31 ± 0.02 g PHA per g cell dried weight, corresponding to 1.13 ± 0.06 g L-1 and a PHA yield of 23 ± 1 mg g-1 BSG. It was also found that C. necator presented the highest PHA accumulation of the tested strains followed closely by B. cepacia, reaching their maxima at 48 h. Although BSG has been used as a source for other bioproducts, these results show the potential of this by-product as a no-cost raw material for producing PHAs in a waste valorization and circular economy scheme.
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- 2021
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237. Model-based Optimization of Biopolymer Production from Glycerol
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T. R. Sreekrishnan, Ashok K. Srivastava, and K. Sharma
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biology ,Process Chemistry and Technology ,Cupriavidus necator ,Poly-3-hydroxybutyrate ,technology, industry, and agriculture ,General Chemistry ,poly(3-hydroxybutyrate) ,glycerol ,engineering.material ,biology.organism_classification ,Biochemistry ,cupriavidus necator ,fed-batch cultivation strategies ,mathematical model ,fed-batch ,cultivation strategies ,chemistry.chemical_compound ,Chemical engineering ,chemistry ,engineering ,Glycerol ,TP155-156 ,Biopolymer - Abstract
The present study focuses on sustainable production of biodegradable polymers by Cupriavidus necator DSMZ 545 using glycerol as substrate. The batch growth and biopolymer production kinetics were established in a 7-L bioreactor, which resulted in a total biomass of 8.88 g L–1 and poly(3-hydroxybutyrate) (PHB) accumulation of 6.76 g L–1. The batch kinetic and independently acquired substrate inhibition data were then used to develop a mathematical model for PHB production process. This was eventually used to design different nutrient feeding strategies under constant feed rate, decreasing feed rate, and pseudo steady state of substrate (glycerol) to optimize the PHB production during fed-batch cultivation. Among all the fed-batch cultivation strategies, the highest PHB accumulation and productivity of 13.12 g L–1 and 0.27 g L–1 h–1, respectively, was achieved in fed-batch bioreactor cultivation where a pseudo steady state with respect to glycerol was maintained. This work is licensed under a Creative Commons Attribution 4.0 International License.
- Published
- 2021
238. Metabolic Engineering of Cupriavidus necator H16 for Sustainable Biofuels from CO2
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Steven W. Singer, Justin Panich, and Bonnie Fong
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0301 basic medicine ,Technology ,Commodity chemicals ,Cupriavidus necator ,Biomass ,Bioengineering ,02 engineering and technology ,Metabolic engineering ,CO(2) bioconversion ,03 medical and health sciences ,Engineering ,Organism ,sustainable aviation fuels ,biology ,business.industry ,Global warming ,Carbon Dioxide ,Biological Sciences ,021001 nanoscience & nanotechnology ,biology.organism_classification ,renewable energy ,biofuels ,Renewable energy ,030104 developmental biology ,Metabolic Engineering ,Biofuel ,Environmental science ,artificial leaf ,Biochemical engineering ,0210 nano-technology ,business ,Hydrogen ,Biotechnology - Abstract
Decelerating global warming is one of the predominant challenges of our time and will require conversion of CO2 to usable products and commodity chemicals. Of particular interest is the production of fuels, because the transportation sector is a major source of CO2 emissions. Here, we review recent technological advances in metabolic engineering of the hydrogen-oxidizing bacterium Cupriavidus necator H16, a chemolithotroph that naturally consumes CO2 to generate biomass. We discuss recent successes in biofuel production using this organism, and the implementation of electrolysis/artificial photosynthesis approaches that enable growth of C. necator using renewable electricity and CO2. Last, we discuss prospects of improving the nonoptimal growth of C. necator in ambient concentrations of CO2.
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- 2021
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239. In-Line Monitoring of Polyhydroxyalkanoate (PHA) Production during High-Cell-Density Plant Oil Cultivations Using Photon Density Wave Spectroscopy
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Björn Gutschmann, Thomas Schiewe, Manon T.H. Weiske, Peter Neubauer, Roland Hass, and Sebastian L. Riedel
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polyhydroxyalkanoate ,PHA ,process analytical technologies ,PAT ,plant oil ,high-cell-density fed-batch ,photon density wave spectroscopy ,PDW ,Ralstonia eutropha ,Cupriavidus necator ,on-line ,in-line ,Technology ,Biology (General) ,QH301-705.5 - Abstract
Polyhydroxyalkanoates (PHAs) are biodegradable plastic-like materials with versatile properties. Plant oils are excellent carbon sources for a cost-effective PHA production, due to their high carbon content, large availability, and comparatively low prices. Additionally, efficient process development and control is required for competitive PHA production, which can be facilitated by on-line or in-line monitoring devices. To this end, we have evaluated photon density wave (PDW) spectroscopy as a new process analytical technology for Ralstonia eutropha (Cupriavidus necator) H16 plant oil cultivations producing polyhydroxybutyrate (PHB) as an intracellular polymer. PDW spectroscopy was used for in-line recording of the reduced scattering coefficient µs’ and the absorption coefficient µa at 638 nm. A correlation of µs’ with the cell dry weight (CDW) and µa with the residual cell dry weight (RCDW) was observed during growth, PHB accumulation, and PHB degradation phases in batch and pulse feed cultivations. The correlation was used to predict CDW, RCDW, and PHB formation in a high-cell-density fed-batch cultivation with a productivity of 1.65 gPHB·L−1·h−1 and a final biomass of 106 g·L−1 containing 73 wt% PHB. The new method applied in this study allows in-line monitoring of CDW, RCDW, and PHA formation.
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- 2019
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240. 2-Ketogluconate Kinase from Cupriavidus necator H16: Purification, Characterization, and Exploration of Its Substrate Specificity
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Israel Sánchez-Moreno, Natalia Trachtmann, Sibel Ilhan, Virgil Hélaine, Marielle Lemaire, Christine Guérard-Hélaine, and Georg A. Sprenger
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2-ketogluconate ,2-ketogluconate kinase ,2-ketogulonate ,2-keto-3-deoxygluconate ,Cupriavidus necator ,biocatalysis ,monosaccharides phosphate ,Organic chemistry ,QD241-441 - Abstract
We have cloned, overexpressed, purified, and characterized a 2-ketogluconate kinase (2-dehydrogluconokinase, EC 2.7.1.13) from Cupriavidus necator (Ralstonia eutropha) H16. Exploration of its substrate specificity revealed that three ketoacids (2-keto-3-deoxy-d-gluconate, 2-keto-d-gulonate, and 2-keto-3-deoxy-d-gulonate) with structures close to the natural substrate (2-keto-d-gluconate) were successfully phosphorylated at an efficiency lower than or comparable to 2-ketogluconate, as depicted by the measured kinetic constant values. Eleven aldo and keto monosaccharides of different chain lengths and stereochemistries were also assayed but not found to be substrates. 2-ketogluconate-6-phosphate was synthesized at a preparative scale and was fully characterized for the first time.
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- 2019
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241. Crystal structure of the full‐length LysR‐type transcription regulator CbnR in complex with promoter DNA
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Evdokia Anastasia Giannopoulou, Naruhiko Adachi, Miki Senda, Maharani Pertiwi Koentjoro, Naoto Ogawa, and Toshiya Senda
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0301 basic medicine ,Stereochemistry ,Protein subunit ,Cupriavidus necator ,Crystallography, X-Ray ,Biochemistry ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Bacterial Proteins ,Transcription (biology) ,Inducer ,Promoter Regions, Genetic ,Molecular Biology ,Binding Sites ,biology ,Promoter ,DNA ,Cell Biology ,computer.file_format ,biology.organism_classification ,Protein Data Bank ,Molecular Docking Simulation ,030104 developmental biology ,chemistry ,030220 oncology & carcinogenesis ,Protein quaternary structure ,computer ,Protein Binding ,Transcription Factors - Abstract
LysR-type transcription regulators (LTTRs) comprise one of the largest families of transcriptional regulators in bacteria. They are typically homo-tetrameric proteins and interact with promoter DNA of ~ 50-60 bp. Earlier biochemical studies have suggested that LTTR binding to promoter DNA bends the DNA and, upon inducer binding, the bend angle of the DNA is reduced through a quaternary structure change of the tetrameric LTTR, leading to the activation of transcription. To date, crystal structures of full-length LTTRs, DNA-binding domains (DBD) with their target DNAs, and the regulatory domains with and without inducer molecules have been reported. However, these crystal structures have not provided direct evidence of the quaternary structure changes of LTTRs or of the molecular mechanism underlying these changes. Here, we report the first crystal structure of a full-length LTTR, CbnR, in complex with its promoter DNA. The crystal structure showed that, in the absence of bound inducer molecules, the four DBDs of the tetrameric CbnR interact with the promoter DNA, bending the DNA by ~ 70°. Structural comparison between the DNA-free and DNA-bound forms demonstrates that the quaternary structure change of the tetrameric CbnR required for promoter region-binding arises from relative orientation changes of the three domains in each subunit. The mechanism of the quaternary structure change caused by inducer binding is also discussed based on the present crystal structure, affinity analysis between CbnR and the promoter DNA, and earlier mutational studies on CbnR. DATABASE: Atomic coordinates and structure factors for the full-length Cupriavidus necator NH9 CbnR in complex with promoter DNA are available in the Protein Data Bank under the accession code 7D98.
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- 2021
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242. Exploration of Cupriavidus necator ATCC 25207 for the Production of Poly(3-hydroxybutyrate) Using Acid Treated Beet Molasses
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Aziz Tanriseven, Bulent Keskinler, and Fatma Ertan
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Environmental Engineering ,Materials science ,Polymers and Plastics ,Cupriavidus necator ,macromolecular substances ,02 engineering and technology ,chemistry.chemical_compound ,Hydrolysis ,020401 chemical engineering ,Materials Chemistry ,Food science ,0204 chemical engineering ,chemistry.chemical_classification ,biology ,Molecular mass ,technology, industry, and agriculture ,Sulfuric acid ,Fructose ,021001 nanoscience & nanotechnology ,biology.organism_classification ,6. Clean water ,Invertase ,Enzyme ,chemistry ,lipids (amino acids, peptides, and proteins) ,0210 nano-technology ,Bacteria - Abstract
Poly (3-hydroxybutyrate) (PHB) is a good alternative to petroleum-based plastics due to its biodegradable and biocompatible properties. In the present work, Cupriavidus necator ATCC 25207 was used for the first time to produce PHB using fructose, glucose, and acid or enzyme hydrolyzed molasses, a cheap carbon source. The bacterium produced highest PHB with 4.99 g/L, 3.94 g/L, and 15.28 g/L using fructose, glucose, and acid hydrolyzed molasses, respectively. Sulfuric acid and invertase treated molasses yielded 1288% and 529% more PHB than untreated molasses. In addition, acid treated molasses resulted in 151% more PHB but 34.04% less cell growth than enzyme hydrolyzed molasses. This novel finding could have applications in fermentations using molasses in growth or production media. The utilization of glucose by the bacterium was increased by 67.03% through spontaneous mutagenesis. The characterizations of the produced polymers were carried out using FTIR, NMR, XRD, DSC, TGA, and GPC. The molecular weights of PHB samples from acid hydrolyzed molasses and fructose are 3.84 $$\times $$ 105 and 1.43 $$\times $$ 106 g/mol, respectively. This study shows that C. necator ATCC 25207 has a potential to be used in PHB production using acid hydrolyzed molasses.
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- 2021
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243. The Multiple Roles of Polyphosphate in Ralstonia eutropha and Other Bacteria
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Lea Kneißle, Dieter Jendrossek, Hanna Rosigkeit, and Stanislav Obruca
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biology ,Physiology ,Polyphosphate ,Cupriavidus necator ,Virulence ,pathological conditions, signs and symptoms ,Cell Biology ,Oxidative phosphorylation ,biology.organism_classification ,Applied Microbiology and Biotechnology ,Biochemistry ,Microbiology ,digestive system diseases ,chemistry.chemical_compound ,Polyphosphate kinase ,surgical procedures, operative ,chemistry ,Ralstonia ,otorhinolaryngologic diseases ,Eutropha ,neoplasms ,Bacteria ,Biotechnology - Abstract
An astonishing variety of functions has been attributed to polyphosphate (polyP) in prokaryotes. Besides being a reservoir of phosphorus, functions in exopolysaccharide formation, motility, virulence and in surviving various forms of stresses such as exposure to heat, extreme pH, oxidative agents, high osmolarity, heavy metals and others have been ascribed to polyP. In this contribution, we will provide a historical overview on polyP, will then describe the key proteins of polyP synthesis, the polyP kinases, before we will critically assess of the underlying data on the multiple functions of polyP and provide evidence that – with the exception of a P-storage-function – most other functions of polyP are not relevant for survival of Ralstonia eutropha, a biotechnologically important beta-proteobacterial species.
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- 2021
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244. Anabolism of poly(3-hydroxybutyrate-co-3-hydroxyvalerate) by Cupriavidus necator DSM 545 from spent coffee grounds oil
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Haydn Rhys Ingram and James Winterburn
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0106 biological sciences ,food.ingredient ,Anabolism ,Polyesters ,Cupriavidus necator ,Biomass ,Bioengineering ,Coffee ,01 natural sciences ,03 medical and health sciences ,chemistry.chemical_compound ,food ,010608 biotechnology ,Bioreactor ,Succinyl-CoA ,Food science ,Molecular Biology ,030304 developmental biology ,chemistry.chemical_classification ,0303 health sciences ,Molecular Structure ,biology ,Sunflower oil ,General Medicine ,Tricarboxylic acid ,biology.organism_classification ,Metabolic pathway ,chemistry ,Oils ,Biotechnology - Abstract
Oil extracted from spent coffee grounds (SCG) [yield 16.8 % (w/w)] was discovered to be a highly suitable carbon substrate for the biosynthesis of poly(3-hydroxybutyrate-co-3-hydroxyvalerate) [P(3HB-co-3 HV)] copolymers by Cupriavidus necator DSM 545 in the absence of any traditional 3 HV precursors. Cells cultivated in a 3 L bioreactor (batch) reached a total biomass concentration of 8.9 g L−1 with a P(3HB-co-3 HV) (6.8 mol% 3 HV) content of 89.6 % (w/w). In contrast, cells grown on sunflower oil reached a total biomass concentration of 9.4 gL−1 with a P(3HB-co-3 HV) (0.2 mol% 3 HV) content of 88.1 % (w/w). It is proposed that the organism could synthesize 3 HV monomers from succinyl CoA, an intermediate of the tricarboxylic acid (TCA) cycle, via the succinate-propionate metabolic pathway.
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- 2021
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245. Isopropanol production with reutilization of glucose-derived CO2 by engineered Ralstonia eutropha
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Toshiaki Fukui, Dyah Candra Hapsari Subagyo, Izumi Orita, and Rie Shimizu
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biology ,Cupriavidus necator ,Bioengineering ,Dehydrogenase ,biology.organism_classification ,Applied Microbiology and Biotechnology ,Polyhydroxyalkanoates ,body regions ,Metabolic engineering ,chemistry.chemical_compound ,Ralstonia ,Acetoacetate decarboxylase ,Biochemistry ,chemistry ,parasitic diseases ,biology.protein ,Acetone ,Biotechnology ,Alcohol dehydrogenase - Abstract
Chemolithoautotrophic bacterium Ralstonia eutropha is a versatile host for production of various useful compounds including polyhydroxyalkanoates (PHAs) under both heterotrophic and autotrophic conditions. In this bacterium, Calvin–Benson–Bassham (CBB) cycle is functional even under heterotrophic conditions on sugars and reutilizes CO2 emitted through sugar metabolisms into PHA, leading to increase in yield of the storage polyester. This study focused on isopropanol production from glucose by engineered strains of R. eutropha. The isopropanol-producing strains were constructed by introduction of codon-optimized genes of acetoacetate decarboxylase (adc) and primary-secondary alcohol dehydrogenase (adh) from clostridia into glucose-utilizing and PHA-negative (ΔphaC1) strain of R. eutropha. Several genetic modifications showed that high expression of the isopropanol synthesis genes by using a strong synthetic promoter and deletion of NAD+-dependent (S)-3-hydroxybutyryl-CoA dehydrogenase genes (paaH1 and had) in addition to NADPH-dependent acetoacetyl-CoA reductase genes (phaB1 and phaB3) were effective for improving isopropanol production with low by-production of acetone. Isopropanol titer of 4.13 g/L was achieved by two-stage cultivation of the strain IP-007/pBj5c2-adh-adc, corresponding to overall yield of 0.6 mol mol-glucose−1. The fixation of sugar-derived CO2 during isopropanol synthesis was evaluated by 13C-labelling of the isopropanol produced from [1–13C]-glucose. The 13C-abundance in isopropanol synthesized by the engineered strain was significantly increased up to 4.8%, demonstrating actual reassimilation of CO2 emitted from glucose moiety by decarboxylation and potential contribution towards increase in the carbon yield of isopropanol on glucose.
- Published
- 2021
246. The air-inactivation of formate dehydrogenase FdsDABG from Cupriavidus necator
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Sheron Hakopian, Dimitri Niks, and Russ Hille
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Superoxide Dismutase ,Superoxide ,Biochemistry ,Formate Dehydrogenases ,Catalysis ,Inorganic Chemistry ,FdsDABG ,Superoxides ,Steady-state kinetics ,Theoretical and Computational Chemistry ,Formate dehydrogenase ,Cupriavidus necator ,Xanthine oxidase ,Inorganic & Nuclear Chemistry ,Other Chemical Sciences - Abstract
The nature of air-inactivation of the formate dehydrogenase FdsDABG from Cupriavidus necator has been investigated. It is found that superoxide, generated in the reaction of reduced enzyme with oxygen, is responsible for the loss of activity and that superoxide dismutase protects the enzyme from air-inactivation. Inhibition appears to be due to the reaction of superoxide with the catalytically essential MoS group of the enzyme's molybdenum center in such a way that generates sulfite. SYNOPSIS: Superoxide generated in the reaction of reduced formate dehydrogenase FdsDABG from Cupriavidus necator with O2 is found to be responsible for the loss of activity. Catalytic amounts of superoxide dismutase are found to protect FdsDABG just as well as more generally used stabilizing inhibitors such as nitrate.
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- 2022
247. Crystal structure of multi-functional enzyme FadB from Cupriavidus necator: Non-formation of FadAB complex
- Author
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Hyeoncheol Francis Son, Jae-Woo Ahn, Jiyeon Hong, Jihye Seok, Kyeong Sik Jin, and Kyung-Jin Kim
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X-Ray Diffraction ,Polyhydroxyalkanoates ,3-Hydroxyacyl-CoA Dehydrogenase ,Scattering, Small Angle ,Fatty Acids ,Biophysics ,Cupriavidus necator ,Coenzyme A ,Molecular Biology ,Biochemistry ,Enoyl-CoA Hydratase ,Plastics - Abstract
Cupriavidus necator H16 is a gram-negative chemolithoautotrophic bacterium that has been extensively studied for biosynthesis and biodegradation of polyhydroxyalkanoate (PHA) plastics. To improve our understanding of fatty acid metabolism for PHA production, we determined the crystal structure of multi-functional enoyl-CoA hydratase from Cupriavidus necator H16 (CnFadB). The predicted model of CnFadB created by AlphaFold was used to solve the phase problem during determination of the crystal structure of the protein. The CnFadB structure consists of two distinctive domains, an N-terminal enol-CoA hydratase (ECH) domain and a C-terminal 3-hydroxyacyl-CoA dehydrogenase (HAD) domain, and the substrate- and cofactor-binding modes of these two functional domains were identified. Unlike other known FadB enzymes that exist as dimers complexed with FadA, CnFadB functions as a monomer without forming a complex with CnFadA. Small angle X-ray scattering (SAXS) measurement further proved that CnFadB exists as a monomer in solution. The non-sequential action of FadA and FadB in C. necator appears to affect β-oxidation and PHA synthesis/degradation.
- Published
- 2022
248. A unique class I polyhydroxyalkanoate synthase (PhaC) from Brevundimonas sp. KH11J01 exists as a functional trimer: A comparative study with PhaC from Cupriavidus necator H16
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Netsanet Gizaw Assefa, Hilde Hansen, and Bjørn Altermark
- Subjects
Polyesters ,Polyhydroxyalkanoates ,Cupriavidus necator ,Bioengineering ,General Medicine ,Molecular Biology ,Acyltransferases ,Biotechnology - Abstract
Polyhydroxyalkanoates (PHAs) are natural biodegradable polyesters that are produced by numerous prokaryotic microorganisms primarily as a carbon- and energy reserve. The PhaC enzyme catalyzes the last step in the PHA biosynthesis pathway and synthesizes PHA polymers from hydroxyalkanoic acids. A type I PhaC from a PHA-producing marine bacterium Brevundimonas sp. KH11J01 (BrPhaC) was identified, produced recombinantly and characterized. Its properties were compared with its homolog from C. necator H16 (RePhaC). Unlike other PhaCs, it was found that BrPhaC is a lag-phase free enzyme organized as a trimer, even without the presence of a substrate. The enzymatic reaction is initiated instantly irrespective of temperature, in contrast to RePhaC in which the duration of the lag-phase was highly affected by temperature. At 10 °C BrPhaC was 40% active whereas RePhaC was barely active. The significance of using marine microorganisms, harboring cold-active PHA biosynthesis enzymes, for energy efficient PHA production, is also discussed briefly. The unique trimeric organization of BrPhaC challenges our understanding of the PhaC reaction mechanisms, which is mainly based on the crystal structures of the inactive forms of the enzyme.
- Published
- 2022
249. A genome-scale metabolic model of Cupriavidus necator H16 integrated with TraDIS and transcriptomic data reveals metabolic insights for biotechnological applications
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Nicole Pearcy, Marco Garavaglia, Thomas Millat, James P. Gilbert, Yoseb Song, Hassan Hartman, Craig Woods, Claudio Tomi-Andrino, Rajesh Reddy Bommareddy, Byung-Kwan Cho, David A. Fell, Mark Poolman, John R. King, Klaus Winzer, Jamie Twycross, Nigel P. Minton, and Maranas, Costas D.
- Subjects
Cellular and Molecular Neuroscience ,Metabolic Engineering ,Computational Theory and Mathematics ,Ecology ,Modeling and Simulation ,Genetics ,Cupriavidus necator ,Carbon Dioxide ,Transcriptome ,C700 ,Molecular Biology ,Ecology, Evolution, Behavior and Systematics ,Biotechnology - Abstract
Exploiting biological processes to recycle renewable carbon into high value platform chemicals provides a sustainable and greener alternative to current reliance on petrochemicals. In this regardCupriavidus necatorH16 represents a particularly promising microbial chassis due to its ability to grow on a wide range of low-cost feedstocks, including the waste gas carbon dioxide, whilst also naturally producing large quantities of polyhydroxybutyrate (PHB) during nutrient-limited conditions. Understanding the complex metabolic behaviour of this bacterium is a prerequisite for the design of successful engineering strategies for optimising product yields. We present a genome-scale metabolic model (GSM) ofC.necatorH16 (denotediCN1361), which is directly constructed from the BioCyc database to improve the readability and reusability of the model. After the initial automated construction, we have performed extensive curation and both theoretical and experimental validation. By carrying out a genome-wide essentiality screening using a Transposon-directed Insertion site Sequencing (TraDIS) approach, we showed that the model could predict gene knockout phenotypes with a high level of accuracy. Importantly, we indicate how experimental and computational predictions can be used to improve model structure and, thus, model accuracy as well as to evaluate potential false positives identified in the experiments. Finally, by integrating transcriptomics data withiCN1361 we create a condition-specific model, which, importantly, better reflects PHB production inC.necatorH16. Observed changes in the omics data andin-silico-estimated alterations in fluxes were then used to predict the regulatory control of key cellular processes. The results presented demonstrate thatiCN1361 is a valuable tool for unravelling the system-level metabolic behaviour ofC.necatorH16 and can provide useful insights for designing metabolic engineering strategies.
- Published
- 2022
250. PhD thesis: Tecnologías de vanguardia para la producción de bioplásticos a partir de residuos complejos
- Author
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Herreros, Natalia Hernandez
- Subjects
polyhydroxyalkanoates ,Cupriavidus necator ,volatile fatty acids - Abstract
This Doctoral Thesis has been carried out in the context of the European project "AFTERLIFE" (Advanced Filtration Technologies for the Recovery and Later conversion of relevant Fractions from wastEwater) where the development of a flexible and efficient process is proposed for the recovery and revalorization of different fractions from wastewater of agro-industrial origin. In this context, and the first chapter of this report, the bacteriumCupriavidus necatorH16 was selected for the transformation of volatile fatty acids (VFAs), derived from the anaerobic digestion (AD) of wastewater, into bioplastics from microbial origin or polyhydroxyalkanoates (PHA). Through the characterization of the raw materials and the study of the tolerance limits to the major components of the waste, the production of PHA was maximized in a bioreactor at a scale of 2 L. Applying a strategy of feeding coupled to biomass production and specific uptake rate of the carbon sources available in the wastewater, a PHA accumulation of 80 % (w/w) was achieved with respect to the biomass dry weight, as well as a 0.8 g-1L-1h-1yield.
- Published
- 2022
- Full Text
- View/download PDF
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