4,036 results on '"Kunkel, P"'
Search Results
202. Mask Editor : an Image Annotation Tool for Image Segmentation Tasks
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Zhang, Chuanhai, Loken, Kurt, Chen, Zhiyu, Xiao, Zhiyong, and Kunkel, Gary
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Computer Science - Computer Vision and Pattern Recognition - Abstract
Deep convolutional neural network (DCNN) is the state-of-the-art method for image segmentation, which is one of key challenging computer vision tasks. However, DCNN requires a lot of training images with corresponding image masks to get a good segmentation result. Image annotation software which is easy to use and allows fast image mask generation is in great demand. To the best of our knowledge, all existing image annotation software support only drawing bounding polygons, bounding boxes, or bounding ellipses to mark target objects. These existing software are inefficient when targeting objects that have irregular shapes (e.g., defects in fabric images or tire images). In this paper we design an easy-to-use image annotation software called Mask Editor for image mask generation. Mask Editor allows drawing any bounding curve to mark objects and improves efficiency to mark objects with irregular shapes. Mask Editor also supports drawing bounding polygons, drawing bounding boxes, drawing bounding ellipses, painting, erasing, super-pixel-marking, image cropping, multi-class masks, mask loading, and mask modifying.
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- 2018
203. Study of Xi Photoproduction from Threshold to W = 3.3 GeV
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Goetz, J. T., Hicks, K., Kunkel, M. C., Price, J. W., Weygand, D. P., and Collaboration, the CLAS
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Nuclear Experiment - Abstract
The doubly-strange Xi baryons provide an effective way to study a puzzle called the missing-baryons problem, where both quark models and lattice gauge theory predict more baryon excited states than are seen experimentally. However, few of these excited states have been observed with any certainty. Here, high-mass Xi states have been searched for in photoproduction with the CLAS detector, and upper limits for the total cross sections have been established from threshold to W = 3.3 GeV. In addition, the total cross sections of the ground state Xi(1320) and first excited state Xi(1530) are presented, extending significantly the center-of-mass energy range of previous data., Comment: 6 pages, 5 figures, submitted to PRC rapid communications
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- 2018
- Full Text
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204. Understanding Latent Factors Using a GWAP
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Kunkel, Johannes, Loepp, Benedikt, and Ziegler, Jürgen
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Computer Science - Information Retrieval ,Computer Science - Machine Learning ,Statistics - Machine Learning - Abstract
Recommender systems relying on latent factor models often appear as black boxes to their users. Semantic descriptions for the factors might help to mitigate this problem. Achieving this automatically is, however, a non-straightforward task due to the models' statistical nature. We present an output-agreement game that represents factors by means of sample items and motivates players to create such descriptions. A user study shows that the collected output actually reflects real-world characteristics of the factors., Comment: Proceedings of the Late-Breaking Results track part of the Twelfth ACM Conference on Recommender Systems (RecSys '18), Vancouver, BC, Canada, October 2-7, 2018, 2 pages
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- 2018
205. Tools for Analyzing Parallel I/O
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Kunkel, Julian M., Betke, Eugen, Bryson, Matt, Carns, Philip, Francis, Rosemary, Frings, Wolfgang, Laifer, Roland, and Mendez, Sandra
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Computer Science - Distributed, Parallel, and Cluster Computing - Abstract
Parallel application I/O performance often does not meet user expectations. Additionally, slight access pattern modifications may lead to significant changes in performance due to complex interactions between hardware and software. These challenges call for sophisticated tools to capture, analyze, understand, and tune application I/O. In this paper, we highlight advances in monitoring tools to help address this problem. We also describe best practices, identify issues in measurement and analysis, and provide practical approaches to translate parallel I/O analysis into actionable outcomes for users, facility operators, and researchers., Comment: Workshop paper: https://hps.vi4io.org/events/2018/iodc It will be published with Springer LNCS
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- 2018
206. Functional Pearl: Theorem Proving for All (Equational Reasoning in Liquid Haskell)
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Vazou, Niki, Breitner, Joachim, Kunkel, Will, Van Horn, David, and Hutton, Graham
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Computer Science - Programming Languages - Abstract
Equational reasoning is one of the key features of pure functional languages such as Haskell. To date, however, such reasoning always took place externally to Haskell, either manually on paper, or mechanised in a theorem prover. This article shows how equational reasoning can be performed directly and seamlessly within Haskell itself, and be checked using Liquid Haskell. In particular, language learners --- to whom external theorem provers are out of reach --- can benefit from having their proofs mechanically checked. Concretely, we show how the equational proofs and derivations from Graham's textbook can be recast as proofs in Haskell (spoiler: they look essentially the same)., Comment: Submitted to Haskell'18
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- 2018
207. Observation of universal dynamics in a spinor Bose gas far from equilibrium
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Prüfer, Maximilian, Kunkel, Philipp, Strobel, Helmut, Lannig, Stefan, Linnemann, Daniel, Schmied, Christian-Marcel, Berges, Jürgen, Gasenzer, Thomas, and Oberthaler, Markus K.
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Condensed Matter - Quantum Gases ,General Relativity and Quantum Cosmology ,High Energy Physics - Phenomenology ,Quantum Physics - Abstract
The dynamics of quantum systems far from equilibrium represents one of the most challenging problems in theoretical many-body physics. While the evolution is in general intractable in all its details, relevant observables can become insensitive to microscopic system parameters and initial conditions. This is the basis of the phenomenon of universality. Far from equilibrium, universality is identified through the scaling of the spatiotemporal evolution of the system, captured by universal exponents and functions. Theoretically, this has been studied in examples as different as the reheating process in inflationary universe cosmology, the dynamics of nuclear collision experiments described by quantum chromodynamics, or the post-quench dynamics in dilute quantum gases in non-relativistic quantum field theory. Here we observe the emergence of universal dynamics by evaluating spatially resolved spin correlations in a quasi one-dimensional spinor Bose-Einstein condensate. For long evolution times we extract the scaling properties from the spatial correlations of the spin excitations. From this we find the dynamics to be governed by transport of an emergent conserved quantity towards low momentum scales. Our results establish an important class of non-stationary systems whose dynamics is encoded in time independent scaling exponents and functions signaling the existence of non-thermal fixed points. We confirm that the non-thermal scaling phenomenon involves no fine-tuning, by preparing different initial conditions and observing the same scaling behaviour. Our analog quantum simulation approach provides the basis to reveal the underlying mechanisms and characteristics of non-thermal universality classes. One may use this universality to learn, from experiments with ultra-cold gases, about fundamental aspects of dynamics studied in cosmology and quantum chromodynamics., Comment: 10 pages, 4 figures, 3 supplementary figures
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- 2018
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208. Anchored Bayesian Gaussian Mixture Models
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Kunkel, Deborah and Peruggia, Mario
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Statistics - Methodology - Abstract
Finite mixtures are a flexible modeling tool for irregularly shaped densities and samples from heterogeneous populations. When modeling with mixtures using an exchangeable prior on the component features, the component labels are arbitrary and are indistinguishable in posterior analysis. This makes it impossible to attribute any meaningful interpretation to the marginal posterior distributions of the component features. We propose a model in which a small number of observations are assumed to arise from some of the labeled component densities. The resulting model is not exchangeable, allowing inference on the component features without post-processing. Our method assigns meaning to the component labels at the modeling stage and can be justified as a data-dependent informative prior on the labelings. We show that our method produces interpretable results, often (but not always) similar to those resulting from relabeling algorithms, with the added benefit that the marginal inferences originate directly from a well specified probability model rather than a post hoc manipulation. We provide asymptotic results leading to practical guidelines for model selection that are motivated by maximizing prior information about the class labels and demonstrate our method on real and simulated data., Comment: 65 pages, 11 figures, 11 tables
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- 2018
209. Exclusive photoproduction of $\pi^0$ up to large values of Mandelstam variables $s, t$ and $u$ with CLAS
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Kunkel, M. C., Amaryan, 18 M. J., Strakovsky, I. I., Ritman, 16 J., Goldstein, 18 G. R., Adhikari, 43 K. P., Adhikari, 28 S, Avakian, 13 H., Ball, 39 J., Balossino, 7 I., Barion, 19 L., Battaglieri, 19 M., Batourine, 21 V., Bedlinskiy, 27 I., Biselli, 25 A. S., Boiarinov, 5 S., Briscoe, 39 W. J., Brooks, 16 W. K., Bueltmann, 39 S., Burkert, 32 V. D., Cao, 39 F., Carman, 9 D. S., Celentano, 39 A., Charles, 21 G., Chetry, 32 T., Ciullo, 31 G., Clark, 12 L., Cole, 42 P. L., Contalbrigo, 17 M., Cortes, 19 O., Crede, 17 V., DAngelo, 14 A., Dashyan, 35 N., De Vita, 47 R., De Sanctis, 21 E., Degtyarenko, 20 P. V., Defurne, 39 M., Deur, 7 A., Djalali, 39 C., Dugger, 37 M., Dupre, 2 R., Egiyan, 24 H., Alaoui, 39 A. El, Fassi, 40 L. El, Elouadrhiri, 28 L., Eugenio, 39 P., Fedotov, 14 G., Fersch, 31 R., Filippi, 46 A., Fradi, 23 A., Gavalian, 24 G., Ghandilyan, 29 Y., Ghosh, 47 S., Gilfoyle, 10 G. P., Giovanetti, 34 K. L., Girod, 26 F. X., Glazier, 39 D. I., Gohn, 42 W., Golovatch, E., Gothe, 36 R. W., Griffioen, 37 K. A., Guo, 46 L., Guidal, 39 M., Hafidi, 24 K., Hakobyan, 1 H., Harrison, 47 N., Hattawy, 39 M., Hicks, 1 K., Holtrop, 31 M., Hyde, 29 C. E., Ireland, 32 D. G., Ishkhanov, 42 B. S., Isupov, 36 E. L., Jenkins, 36 D., Joo, 44 K., Kabir, 9 M. L., Keller, 28 D., Khachatryan, 45 G., Khachatryan, 47 M., Khandaker, 32 M., Kim, A., Kim, 9 W., Klein, 27 A., Klein, 32 F., Kubarovsky, 16 V., Kuhn, 39 S. E., Laget, 32 J. M., Lanza, 7 L., Lenisa, 35 P., Lersch, 19 D., Livingston, 18 K., MacGregor, 42 I . J . D., Markov, 42 N., Mbianda, 9 G., McKinnon, 32 B., Mineeva, 42 T., Mokeev, 9 V., Montgomery, 36 R. A., Movsisyan, 42 A, Camacho, 19 C. Munoz, Nadel-Turonski, 24 P., Niccolai, 39 S., Niculescu, 24 G., Osipenko, 26 M., Ostrovidov, 21 A. I., Paolone, 14 M., Park, 38 K., Pasyuk, 37 E., Payette, 39 D., Phelps, 32 W., Pogorelko, 16 O., Poudel, 25 J., Price, 32 J. W., Procureur, 4 S., Prok, 7 Y., Protopopescu, 45 D., Ripani, 42 M., Ritchie, 21 B. G., Rizzo, 2 A., Rosner, 35 G., Roy, 42 A., Sabatie, 10 F., Salgado, 7 C., Schadmand, 30 S., Schumacher, 18 R. A., Sharabian, 5 Y. G., Skorodumina, 39 Iu., Ireland, 36 D. G., Sokhan, 42 D., Sober, 42 D. I., Sparveris, 6 N., Strauch, 38 S., Taiuti, 16 M., Tan, 15 J. A., Ungaro, 27 M., Voskanyan, 33 H., Voutier, 47 E., Watts, 24 D. P., Weinstein, 41 L., Wei, 32 X., Weygand, 39 D. P., Zachariou, 8 N., Zhang, 41 J., and Zhao32, Z. W.
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High Energy Physics - Experiment ,High Energy Physics - Phenomenology ,Nuclear Experiment ,Nuclear Theory - Abstract
Exclusive photoproduction cross sections have been measured for the process $\gamma p \rightarrow p\pi^0(e^+e^-(\gamma))$ with the Dalitz decay final state using tagged photon energies in the range of $E_{\gamma} = 1.275-5.425$ GeV. The complete angular distribution of the final state $\pi^0$, for the entire photon energy range up to large values of $t$ and $u$, has been measured for the first time. The data obtained show that the cross section $d\sigma/dt$, at mid to large angles, decreases with energy as $s^{-6.89\pm 0.26} $. This is in agreement with the perturbative QCD quark counting rule prediction of $s^{-7} $. Paradoxically, the size of angular distribution of measured cross sections is greatly underestimated by the QCD based Generalized Parton Distribution mechanism at highest available invariant energy $s=11$ GeV$^2$. At the same time, the Regge exchange based models for $\pi^0$ photoproduction are more consistent with experimental data., Comment: 7 pages, 6 figures
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- 2017
- Full Text
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210. Automated Image Analysis Framework for the High-Throughput Determination of Grapevine Berry Sizes Using Conditional Random Fields
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Roscher, Ribana, Herzog, Katja, Kunkel, Annemarie, Kicherer, Anna, Töpfer, Reinhard, and Förstner, Wolfgang
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Computer Science - Computer Vision and Pattern Recognition - Abstract
The berry size is one of the most important fruit traits in grapevine breeding. Non-invasive, image-based phenotyping promises a fast and precise method for the monitoring of the grapevine berry size. In the present study an automated image analyzing framework was developed in order to estimate the size of grapevine berries from images in a high-throughput manner. The framework includes (i) the detection of circular structures which are potentially berries and (ii) the classification of these into the class 'berry' or 'non-berry' by utilizing a conditional random field. The approach used the concept of a one-class classification, since only the target class 'berry' is of interest and needs to be modeled. Moreover, the classification was carried out by using an automated active learning approach, i.e no user interaction is required during the classification process and in addition, the process adapts automatically to changing image conditions, e.g. illumination or berry color. The framework was tested on three datasets consisting in total of 139 images. The images were taken in an experimental vineyard at different stages of grapevine growth according to the BBCH scale. The mean berry size of a plant estimated by the framework correlates with the manually measured berry size by $0.88$.
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- 2017
- Full Text
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211. Double $K_S^0$ Photoproduction off the Proton at CLAS
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Chandavar, S., Goetz, J. T., Hicks, K., Keller, D., Kunkel, M. C., Paolone, M., Weygand, D. P., Adhikari, K. P., Adhikari, S., Akbar, Z., Ball, J., Balossino, I., Barion, L., Bashkanov, M., Battaglieri, M., Bedlinskiy, I., Biselli, A. S., Briscoe, W. J., Brooks, W. K., Burkert, V. D., Cao, F., Carman, D. S., Celentano, A., Charles, G., Chetry, T., Ciullo, G., Clark, L., Cole, P. L., Contalbrigo, M., Crede, V., D'Angelo, A., Dashyan, N., De Vita, R., De Sanctis, E., Defurne, M., Deur, A., Djalali, C., Dupre, R., Egiyan, H., Alaoui, A. El, Fassi, L. El, Eugenio, P., Fedotov, G., Filippi, A., Fradi, A., Gavalian, G., Ghandilyan, Y., Gilfoyle, G. P., Girod, F. X., Glazier, D. I., Gohn, W., Golovatch, E., Gothe, R. W., Griffioen, K. A., Guidal, M., Guo, L., Hafidi, K., Hakobyan, H., Hanretty, C., Harrison, N., Hattawy, M., Heddle, D., Holtrop, M., Ilieva, Y., Ireland, D. G., Isupov, E. L., Jenkins, D., Johnston, S., Joo, K., Joosten, S., Kabir, M. L., Khachatryan, G., Khachatryan, M., Khandaker, M., Kim, W., Klein, A., Klein, F. J., Kubarovsky, V., Lanza, L., Lenisa, P., Livingston, K., MacGregor, I. J. D., Markov, N., McCracken, M. E., McKinnon, B., Meyer, C. A., Mineeva, T., Mokeev, V., Movsisyan, A, Camacho, C. Munoz, Nadel-Turonski, P., Niccolai, S., Niculescu, G., Osipenko, M., Ostrovidov, A. I., Paremuzyan, R., Park, K., Pasyuk, E., Phelps, W., Pogorelko, O., Price, J. W., Prok, Y., Protopopescu, D., Raue, B. A., Ripani, M., Riser, D., Ritchie, B. G., Rizzo, A., Rosner, G., Sabatie, F., Salgado, C., Schumacher, R. A., Sharabian, Y. G., Simonyan, A., Skorodumina, Iu., Sokhan, D., Smith, G. D., Sparveris, N., Stepanyan, S., Strakovsky, I. I., Strauch, S., Ungaro, M., Voutier, E., Wei, X., Zachariou, N., Zhang, J., and Zhao, Z. W.
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Nuclear Experiment - Abstract
The $f_0$(1500) meson resonance is one of several contenders to have significant mixing with the lightest glueball. This resonance is well established from several previous experiments. Here we present the first photoproduction data for the $f_0$(1500) via decay into the $K_S^0 K_S^0$ channel using the CLAS detector. The reaction $\gamma p$ -> $f_0 p$ -> $K_S^0 K_S^0 p$, where J = 0, 2, was measured with photon energies from 2.7 to 5.1 GeV. A clear peak is seen at 1500 MeV in the background subtracted invariant mass spectra of the two kaons. This is enhanced if the measured 4-momentum transfer to the proton target is restricted to be less than 1.0 GeV2. By comparing data with simulations, it can be concluded that the peak at 1500 MeV is produced primarily at low t, which is consistent with a t-channel production mechanism., Comment: 12 pages, 12 figures
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- 2017
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212. Dark matter search in a Beam-Dump eXperiment (BDX) at Jefferson Lab: an update on PR12-16-001
- Author
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Battaglieri, M., Bersani, A., Bracco, G., Caiffi, B., Celentano, A., De Vita, R., Marsicano, L., Musico, P., Osipenko, M., Panza, F., Ripani, M., Santopinto, E., Taiuti, M., Bellini, V., Bondi', M., Castorina, P., De Napoli, M., Italiano, A., Kuznetzov, V., Leonora, E., Mammoliti, F., Randazzo, N., Re, L., Russo, G., Russo, M., Shahinyan, A., Sperduto, M., Spinali, S., Sutera, C., Tortorici, F., Baltzell, N., Dalton, M., Freyberger, A., Girod, F. -X., Kharashvili, G., Kubarovsky, V., Pasyuk, E., Smith, E. S., Stepanyan, S., Ungaro, M., Whitlatch, T., Izaguirre, E., Krnjaic, G., Snowden-Ifft, D., Loomba, D., Carpinelli, M., D'Urso, D., Gabrieli, A., Maccioni, G., Sant, M., Sipala, V., Ameli, F., Cisbani, E., De Persio, F., Del Dotto, A., Garibaldi, F., Meddi, F., Nicolau, C. A., Urciuoli, G. M., Chiarusi, T., Manzali, M., Pellegrino, C., Schuster, P., Toro, N., Essig, R., Wood, M. H., Paremuzyan, M. Holtrop. R., De Cataldo, G., De Leo, R., Di Bari, D., Lagamba, L., Nappi, E., Perrino, R., Balossino, I., Barion, L., Ciullo, G., Contalbrigo, M., Drago, A., Lenisa, P., Movsisyan, A., Pappalardo, L., Spizzo, F., Turisini, M., Hasch, D., Lucherini, V., Mirazita, M., Pisano, S., Rossi, P., Tomassini, S., Simi, G., D'Angelo, A., Lanza, L., Rizzo, A., Schaerf, C., Zonta, I., Filippi, A., Genovese, M., Fegan, S., Kunkel, M., Bashkanov, M., Murphy, A., Smith, G., Watts, D., Zachariou, N., Zana, L., Glazier, D., Ireland, D., McKinnon, B., Sokhan, D., Colaneri, L., Pereira, S. Anefalos, Afanasev, A., Briscoe, B., Strakovsky, I., Kalantarians, N., Weinstein, L., Adhikari, K. P., Dunne, J. A., Dutta, D., Fassi, L. El, Ye, L., Hicks, K., Cole, P., Dobbs, S., Fanelli, C., and Murthy, P. T. M.
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Physics - Instrumentation and Detectors ,High Energy Physics - Experiment - Abstract
This document is an update to the proposal PR12-16-001 Dark matter search in a Beam-Dump eXperiment (BDX) at Jefferson Lab submitted to JLab-PAC44 in 2016 reporting progress in addressing questions raised regarding the beam-on backgrounds. The concerns are addressed by adopting a new simulation tool, FLUKA, and planning measurements of muon fluxes from the dump with its existing shielding around the dump. First, we have implemented the detailed BDX experimental geometry into a FLUKA simulation, in consultation with experts from the JLab Radiation Control Group. The FLUKA simulation has been compared directly to our GEANT4 simulations and shown to agree in regions of validity. The FLUKA interaction package, with a tuned set of biasing weights, is naturally able to generate reliable particle distributions with very small probabilities and therefore predict rates at the detector location beyond the planned shielding around the beam dump. Second, we have developed a plan to conduct measurements of the muon ux from the Hall-A dump in its current configuration to validate our simulations., Comment: Document submitted to JLab PAC 45
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- 2017
213. Shape Memory Polyurethane with Porous Architectures for Potential Applications in Intracranial Aneurysm Treatment.
- Author
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Wang, Jingyu, Kunkel, Robert, Luo, Jishan, Li, Yuhua, Liu, Hong, Bohnstedt, Bradley, Liu, Yingtao, and Lee, Chung-Hao
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electrical resistance heating ,glass transition temperature ,micro-CT ,polyurethane ,porous architecture ,shape memory ,shape recovery activation ,thermo-mechanical properties - Abstract
Conventional endovascular embolization of intracranial (or brain) aneurysms using helical detachable platinum coils can be time-consuming and occasionally requires retreatment due to incomplete coil packing. These shortcomings create a need for new biomedical devices and methods of achieving brain aneurysm occlusion. This paper presents a biocompatible and highly porous shape memory polymer (SMP) material with potential applications in the development of novel endovascular devices for treating complex intracranial aneurysms. The novel highly porous polyurethane SMP is synthesized as an open cell foam material with a glass transition temperature (Tg) of 39 °C using a sugar particle leaching method. Once heated above the Tg, the compressed SMP foam is able to quickly return to its original shape. An electrical resistance heating method is also employed to demonstrate a potential triggering design for the shape recovery process in future medical applications. The mechanical properties of the developed SMP foam are characterized at temperatures up to 10 °C above the respective Tg. The results from this work demonstrate that the porous SMP material developed in this study and the electrical resistance heating trigger mechanism provide a solid foundation for future design of biomedical devices to enhance the long-term therapeutic outcomes of endovascular intracranial aneurysm treatments.
- Published
- 2019
214. High‐frequency ultrasound imaging of the anal sphincter muscles in normal subjects and patients with fecal incontinence
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Ledgerwood‐Lee, Melissa, Zifan, Ali, Kunkel, David C, Sah, Robert, and Mittal, Ravinder K
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Biomedical and Clinical Sciences ,Clinical Sciences ,Digestive Diseases ,Bioengineering ,Biomedical Imaging ,Detection ,screening and diagnosis ,4.1 Discovery and preclinical testing of markers and technologies ,Adult ,Aged ,Aged ,80 and over ,Anal Canal ,Fecal Incontinence ,Female ,Humans ,Male ,Middle Aged ,Perineum ,Ultrasonography ,Neurosciences ,Medical Physiology ,Gastroenterology & Hepatology ,Clinical sciences ,Medical physiology - Abstract
IntroductionThe current "gold standard" to diagnose anal sphincter morphology and disruptions utilizes low-frequency (3-9 MHz) ultrasound (US) imaging techniques that provide a general outline of the sphincter muscles, but not their microstructural details. High-frequency US transducers (7-15 MHz) have been used to study the muscle architecture (direction of muscle fascicles) in the limb muscle.AimsThe goal of our study was to visualize the microstructural anatomy of the anal sphincters, specifically the external anal sphincter (EAS), using high-frequency US imaging.MethodsStudies were conducted in asymptomatic female and male subjects and patients with fecal incontinence. US images were acquired using a low-frequency US (3-9 MHz) and high-frequency (7-15 MHz) US transducer. The latter was placed intra-anally to image the anal canal at 12, 9, 3, and 6 o'clock positions.ResultsThe low-frequency US images revealed the general outline of the anal sphincter muscles. On the other hand, high-frequency imaging visualized muscle fascicles and connective tissue inside the external anal sphincter (EAS). In FI patients, there was loss of muscle fascicles and alteration in the echo-intensity pattern in the region of damaged EAS suggestive of muscle fibrosis.ConclusionHigh-frequency ultrasound imaging is a powerful tool to visualize the microstructural details of the EAS. Our studies show that damage to the EAS muscle results in the alteration of its myoarchitecture, that is, loss of muscle fascicles and increase in the muscle connective tissue.
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- 2019
215. Overview paper: New insights into aerosol and climate in the Arctic
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Abbatt, JPD, Richard Leaitch, W, Aliabadi, AA, Bertram, AK, Blanchet, JP, Boivin-Rioux, A, Bozem, H, Burkart, J, Chang, RYW, Charette, J, Chaubey, JP, Christensen, RJ, Cirisan, A, Collins, DB, Croft, B, Dionne, J, Evans, GJ, Fletcher, CG, Gali, M, Ghahremaninezhad, R, Girard, E, Gong, W, Gosselin, M, Gourdal, M, Hanna, SJ, Hayashida, H, Herber, AB, Hesaraki, S, Hoor, P, Huang, L, Hussherr, R, Irish, VE, Keita, SA, Kodros, JK, Köllner, F, Kolonjari, F, Kunkel, D, Ladino, LA, Law, K, Levasseur, M, Libois, Q, Liggio, J, Lizotte, M, MacDonald, KM, Mahmood, R, Martin, RV, Mason, RH, Miller, LA, Moravek, A, Mortenson, E, Mungall, EL, Murphy, JG, Namazi, M, Norman, AL, O'Neill, NT, Pierce, JR, Russell, LM, Schneider, J, Schulz, H, Sharma, S, Si, M, Staebler, RM, Steiner, NS, Thomas, JL, Von Salzen, K, Wentzell, JJB, Willis, MD, Wentworth, GR, Xu, JW, and Yakobi-Hancock, JD
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Meteorology & Atmospheric Sciences ,Atmospheric Sciences ,Astronomical and Space Sciences - Abstract
Motivated by the need to predict how the Arctic atmosphere will change in a warming world, this article summarizes recent advances made by the research consortium NETCARE (Network on Climate and Aerosols: Addressing Key Uncertainties in Remote Canadian Environments) that contribute to our fundamental understanding of Arctic aerosol particles as they relate to climate forcing. The overall goal of NETCARE research has been to use an interdisciplinary approach encompassing extensive field observations and a range of chemical transport, earth system, and biogeochemical models. Several major findings and advances have emerged from NETCARE since its formation in 2013. (1) Unexpectedly high summertime dimethyl sulfide (DMS) levels were identified in ocean water (up to 75 nM) and the overlying atmosphere (up to 1 ppbv) in the Canadian Arctic Archipelago (CAA). Furthermore, melt ponds, which are widely prevalent, were identified as an important DMS source (with DMS concentrations of up to 6 nM and a potential contribution to atmospheric DMS of 20 % in the study area). (2) Evidence of widespread particle nucleation and growth in the marine boundary layer was found in the CAA in the summertime, with these events observed on 41 % of days in a 2016 cruise. As well, at Alert, Nunavut, particles that are newly formed and grown under conditions of minimal anthropogenic influence during the months of July and August are estimated to contribute 20 % to 80 % of the 30-50 nm particle number density. DMS-oxidation-driven nucleation is facilitated by the presence of atmospheric ammonia arising from seabird-colony emissions, and potentially also from coastal regions, tundra, and biomass burning. Via accumulation of secondary organic aerosol (SOA), a significant fraction of the new particles grow to sizes that are active in cloud droplet formation. Although the gaseous precursors to Arctic marine SOA remain poorly defined, the measured levels of common continental SOA precursors (isoprene and monoterpenes) were low, whereas elevated mixing ratios of oxygenated volatile organic compounds (OVOCs) were inferred to arise via processes involving the sea surface microlayer. (3) The variability in the vertical distribution of black carbon (BC) under both springtime Arctic haze and more pristine summertime aerosol conditions was observed. Measured particle size distributions and mixing states were used to constrain, for the first time, calculations of aerosol-climate interactions under Arctic conditions. Aircraft- and ground-based measurements were used to better establish the BC source regions that supply the Arctic via long-range transport mechanisms, with evidence for a dominant springtime contribution from eastern and southern Asia to the middle troposphere, and a major contribution from northern Asia to the surface. (4) Measurements of ice nucleating particles (INPs) in the Arctic indicate that a major source of these particles is mineral dust, likely derived from local sources in the summer and long-range transport in the spring. In addition, INPs are abundant in the sea surface microlayer in the Arctic, and possibly play a role in ice nucleation in the atmosphere when mineral dust concentrations are low. (5) Amongst multiple aerosol components, BC was observed to have the smallest effective deposition velocities to high Arctic snow (0.03 cm s1).
- Published
- 2019
216. Constraint-based Learning of Phonological Processes
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Barke, Shraddha, Kunkel, Rose, Polikarpova, Nadia, Meinhardt, Eric, Bakovic, Eric, and Bergen, Leon
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- 2019
217. Bayesian inverse methods for spatiotemporal characterization of gastric electrical activity from cutaneous multi-electrode recordings
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Allegra, Alexis B, Gharibans, Armen A, Schamberg, Gabriel E, Kunkel, David C, and Coleman, Todd P
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Biomedical and Clinical Sciences ,Clinical Sciences ,Clinical Research ,Digestive Diseases ,Diabetes Complications ,Electrodes ,Electrophysiological Phenomena ,Gastrointestinal Motility ,Humans ,Models ,Biological ,Stomach ,Stomach Diseases ,General Science & Technology - Abstract
Gastrointestinal (GI) problems give rise to 10 percent of initial patient visits to their physician. Although blockages and infections are easy to diagnose, more than half of GI disorders involve abnormal functioning of the GI tract, where diagnosis entails subjective symptom-based questionnaires or objective but invasive, intermittent procedures in specialized centers. Although common procedures capture motor aspects of gastric function, which do not correlate with symptoms or treatment response, recent findings with invasive electrical recordings show that spatiotemporal patterns of the gastric slow wave are associated with diagnosis, symptoms, and treatment response. We here consider developing non-invasive approaches to extract this information. Using CT scans from human subjects, we simulate normative and disordered gastric surface electrical activity along with associated abdominal activity. We employ Bayesian inference to solve the ill-posed inverse problem of estimating gastric surface activity from cutaneous recordings. We utilize a prior distribution on the spatiotemporal activity pertaining to sparsity in the number of wavefronts on the stomach surface, and smooth evolution of these wavefronts across time. We implement an efficient procedure to construct the Bayes optimal estimate and demonstrate its superiority compared to other commonly used inverse methods, for both normal and disordered gastric activity. Region-specific wave direction information is calculated and consistent with the simulated normative and disordered cases. We apply these methods to cutaneous multi-electrode recordings of two human subjects with the same clinical description of motor function, but different diagnosis of underlying cause. Our method finds statistically significant wave propagation in all stomach regions for both subjects, anterograde activity throughout for the subject with diabetic gastroparesis, and retrograde activity in some regions for the subject with idiopathic gastroparesis. These findings provide a further step towards towards non-invasive phenotyping of gastric function and indicate the long-term potential for enabling population health opportunities with objective GI assessment.
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- 2019
218. Diagnostic capabilities of nanopore long‐read sequencing in muscular dystrophy
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Christine C. Bruels, Hannah R. Littel, Audrey L. Daugherty, Seth Stafki, Elicia A. Estrella, Emily S. McGaughy, Don Truong, Jonathan P. Badalamenti, Lynn Pais, Vijay S. Ganesh, Anne O'Donnell‐Luria, Heather J. Stalker, Yang Wang, Christin Collins, Andrea Behlmann, Richard J. L. F. Lemmers, Silvère M. van derMaarel, Regina Laine, Partha S. Ghosh, Basil T. Darras, Carla D. Zingariello, Christina A. Pacak, Louis M. Kunkel, and Peter B. Kang
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Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Abstract Many individuals with muscular dystrophies remain genetically undiagnosed despite clinical diagnostic testing, including exome sequencing. Some may harbor previously undetected structural variants (SVs) or cryptic splice sites. We enrolled 10 unrelated families: nine had muscular dystrophy but lacked complete genetic diagnoses and one had an asymptomatic DMD duplication. Nanopore genomic long‐read sequencing identified previously undetected pathogenic variants in four individuals: an SV in DMD, an SV in LAMA2, and two single nucleotide variants in DMD that alter splicing. The DMD duplication in the asymptomatic individual was in tandem. Nanopore sequencing may help streamline genetic diagnostic approaches for muscular dystrophy.
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- 2022
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219. Store‐operated calcium entry controls innate and adaptive immune cell function in inflammatory bowel disease
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Marilena Letizia, Yin‐Hu Wang, Ulrike Kaufmann, Lorenz Gerbeth, Annegret Sand, Max Brunkhorst, Patrick Weidner, Jörn Felix Ziegler, Chotima Böttcher, Stephan Schlickeiser, Camila Fernández, Megumi Yamashita, Kenneth Stauderman, Katherine Sun, Désirée Kunkel, Murali Prakriya, IBDome Researchers, Ashley Sanders, Britta Siegmund, Stefan Feske, and Carl Weidinger
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Crohn's disease ,mass cytometry ,store‐operated calcium entry (SOCE) ,T cell transfer models of colitis ,ulcerative colitis ,Medicine (General) ,R5-920 ,Genetics ,QH426-470 - Abstract
Abstract Inflammatory bowel disease (IBD) is characterized by dysregulated intestinal immune responses. Using mass cytometry (CyTOF) to analyze the immune cell composition in the lamina propria (LP) of patients with ulcerative colitis (UC) and Crohn's disease (CD), we observed an enrichment of CD4+ effector T cells producing IL‐17A and TNF, CD8+ T cells producing IFNγ, T regulatory (Treg) cells, and innate lymphoid cells (ILC). The function of these immune cells is regulated by store‐operated Ca2+ entry (SOCE), which results from the opening of Ca2+ release‐activated Ca2+ (CRAC) channels formed by ORAI and STIM proteins. We observed that the pharmacologic inhibition of SOCE attenuated the production of proinflammatory cytokines including IL‐2, IL‐4, IL‐6, IL‐17A, TNF, and IFNγ by human colonic T cells and ILCs, reduced the production of IL‐6 by B cells and the production of IFNγ by myeloid cells, but had no effect on the viability, differentiation, and function of intestinal epithelial cells. T cell‐specific deletion of CRAC channel genes in mice showed that Orai1, Stim1, and Stim2‐deficient T cells have quantitatively distinct defects in SOCE, which correlate with gradually more pronounced impairment of cytokine production by Th1 and Th17 cells and the severity of IBD. Moreover, the pharmacologic inhibition of SOCE with a selective CRAC channel inhibitor attenuated IBD severity and colitogenic T cell function in mice. Our data indicate that SOCE inhibition may be a suitable new approach for the treatment of IBD.
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- 2022
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220. Analysis of diverse double-strand break synapsis with Polλ reveals basis for unique substrate specificity in nonhomologous end-joining
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Andrea M. Kaminski, Kishore K. Chiruvella, Dale A. Ramsden, Katarzyna Bebenek, Thomas A. Kunkel, and Lars C. Pedersen
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Science - Abstract
Using X-ray crystallography and nonhomologous end-joining assays, this study reveals structural features within Polλ that provide it with the ability to bridge and stabilize tenuous DNA double-strand break ends, allowing for religation.
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- 2022
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221. Skeletal muscle-specific overexpression of miR-486 limits mammary tumor-induced skeletal muscle functional limitations
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Ruizhong Wang, Brijesh Kumar, Emma H. Doud, Amber L. Mosley, Matthew S. Alexander, Louis M. Kunkel, and Harikrishna Nakshatri
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DMD:non-coding RNAs ,breast cancer ,functional limitations ,miR-486 ,skeletal muscle ,Therapeutics. Pharmacology ,RM1-950 - Abstract
miR-486 is a myogenic microRNA, and its reduced skeletal muscle expression is observed in muscular dystrophy. Transgenic overexpression of miR-486 using muscle creatine kinase promoter (MCK-miR-486) partially rescues muscular dystrophy phenotype. We had previously demonstrated reduced circulating and skeletal muscle miR-486 levels with accompanying skeletal muscle defects in mammary tumor models. To determine whether skeletal muscle miR-486 is functionally similar in dystrophies and cancer, we performed functional limitations and biochemical studies of skeletal muscles of MMTV-Neu mice that mimic HER2+ breast cancer and MMTV-PyMT mice that mimic luminal subtype B breast cancer and these mice crossed to MCK-miR-486 mice. miR-486 significantly prevented tumor-induced reduction in muscle contraction force, grip strength, and rotarod performance in MMTV-Neu mice. In this model, miR-486 reversed cancer-induced skeletal muscle changes, including loss of p53, phospho-AKT, and phospho-laminin alpha 2 (LAMA2) and gain of hnRNPA0 and SRSF10 phosphorylation. LAMA2 is a part of the dystrophin-associated glycoprotein complex, and its loss of function causes congenital muscular dystrophy. Complementing these beneficial effects on muscle, miR-486 indirectly reduced tumor growth and improved survival, which is likely due to systemic effects of miR-486 on production of pro-inflammatory cytokines such as IL-6. Thus, similar to dystrophy, miR-486 has the potential to reverse skeletal muscle defects and cancer burden.
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- 2022
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222. Biaxial mechanical data of porcine atrioventricular valve leaflets.
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Jett, Samuel, Laurence, Devin, Kunkel, Robert, Babu, Anju, Kramer, Katherine, Baumwart, Ryan, Towner, Rheal, Wu, Yi, and Lee, Chung-Hao
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This dataset contains the anisotropic tissue responses of porcine atrioventricular valve leaflets to force-controlled biaxial mechanical testing. The set includes the first Piola-Kirchhoff Stress and the specimen stretches (λ) in both circumferential and radial tissue directions (C and R, respectively) for the mitral valve anterior and posterior leaflets (MVAL and MVPL), and the tricuspid valve anterior, posterior, and septal leaflets (TVAL, TVPL, and TVSL) from six porcine hearts at five separate force-controlled biaxial loading protocols. This dataset is associated with a companion journal article, which can be consulted for further information about the methodology, results, and discussion of this biaxial mechanical testing (Jett et al., in press) [1].
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- 2018
223. Defining County-Level Terrestrial Rabies Freedom Using the US National Rabies Surveillance System: Surveillance Data Analysis
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Amber Kunkel, Gabriella Veytsel, Sarah Bonaparte, Haillie Meek, Xiaoyue Ma, Amy J Davis, Jesse Bonwitt, and Ryan M Wallace
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Public aspects of medicine ,RA1-1270 - Abstract
BackgroundRabies is a deadly zoonotic disease with nearly 100% fatality rate. In the United States, rabies virus persists in wildlife reservoirs, with occasional spillover into humans and domestic animals. The distribution of reservoir hosts in US counties plays an important role in public health decision-making, including the recommendation of lifesaving postexposure prophylaxis upon suspected rabies exposures. Furthermore, in surveillance data, it is difficult to discern whether counties have no cases reported because rabies was not present or because counties have an unreported rabies presence. These epizootics are monitored by the National Rabies Surveillance System (NRSS), to which approximately 130 state public health, agriculture, and academic laboratories report animal rabies testing statistics. Historically, the NRSS classifies US counties as free from terrestrial rabies if, over the previous 5 years, they and any adjacent counties did not report any rabies cases and they tested ≥15 reservoir animals or 30 domestic animals. ObjectiveThis study aimed to describe and evaluate the historical NRSS rabies-free county definition, review possibilities for improving this definition, and develop a model to achieve more precise estimates of the probability of terrestrial rabies freedom and the number of reported county-level terrestrial rabies cases. MethodsData submitted to the NRSS by state and territorial public health departments and the US Department of Agriculture Wildlife Services were analyzed to evaluate the historical rabies-free definition. A zero-inflated negative binomial model created county-level predictions of the probability of rabies freedom and the expected number of rabies cases reported. Data analyzed were from all animals submitted for laboratory diagnosis of rabies in the United States from 1995 to 2020 in skunk and raccoon reservoir territories, excluding bats and bat variants. ResultsWe analyzed data from 14,642 and 30,120 county-years in the raccoon and skunk reservoir territories, respectively. Only 0.85% (9/1065) raccoon county-years and 0.79% (27/3411) skunk county-years that met the historical rabies-free criteria reported a case in the following year (99.2% negative predictive value for each), of which 2 were attributed to unreported bat variants. County-level model predictions displayed excellent discrimination for detecting zero cases and good estimates of reported cases in the following year. Counties classified as rabies free rarely (36/4476, 0.8%) detected cases in the following year. ConclusionsThis study concludes that the historical rabies freedom definition is a reasonable approach for identifying counties that are truly free from terrestrial raccoon and skunk rabies virus transmission. Gradations of risk can be measured using the rabies prediction model presented in this study. However, even counties with a high probability of rabies freedom should maintain rabies testing capacity, as there are numerous examples of translocations of rabies-infected animals that can cause major changes in the epidemiology of rabies.
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- 2023
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224. Higher burden of cardiometabolic and socioeconomic risk factors in women with type 2 diabetes: an analysis of the Glycemic Reduction Approaches in Diabetes (GRADE) baseline cohort
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C Wright, C Sanders, C Wilson, L Tucker, S Jones, S Douglass, C Patel, A Kumar, S Smith, A Ghosh, C Adams, R Hill, D Martin, J Hu, M Lee, N Patel, O Smith, J Cook, J Day, M Jackson, G Riera, P McGee, J Park, J Jiménez, S Yang, A Carlson, C Martin, H Liu, Y Li, A Krol, K Wright, S Golden, A Sood, J Martinez, D Sanchez, K Burton, Y Gao, S Martin, O Sanchez, C DeSouza, M Johnson, L Estrada, A Jackson, J Higgins, K Martin, J Craig, A Kuhn, L Ngo, Deborah J Wexler, R Chatterjee, E Walker, J Kerr, W Taylor, J Lim, M Perez, R Henry, Vanita R Aroda, R Fraser, Cyrus Desouza, E King, C Campbell, J González, E Diaz, P Zhang, J Marks, S Abraham, A Ross, M Khalid, T Young, J Myers, J Barzilay, B Chambers, G Montes, C Jensen, J McConnell, R Nelson, L Prosser, S Morton, M Curtis, P Wilson, L Young, M Fürst, S Warren, C Newman, S Kuo, N Rasouli, A Werner, L Morton, A Ghazi, M Salam, F Ismail-Beigi, P Kringas, C Baker, E Ellis, A Cherian, L Holloway, M Madden, B Hollis, G Fuller, B Steiner, K Stokes, R Ayala, T Lowe, K Chu, S Durán, D Dyer, A Alfred, J Leger, Nicole M Butera, T Hamilton, J Costello, E Burgess, R Garg, A Maxwell, C Stevens, W Ye, T Tran, L Fischer, M Hurtado, H Schneier, C Lund, R Lorch, M Mullen, J Bantle, K Arnold, D Wexler, A TURCHIN, MS Lee, D Howard, J Tejada, S Hernandez, Tasma Harindhanavudhi, E Schroeder, K Pham, S Kunkel, A Fagan, G Lord, H CHONG, A Smiley, E Debnam, H Petrovitch, M Bäckman, B Kauffman, V Jenkins, B Cramer, JP Crandall, MD McKee, S Behringer-Massera, J Brown-Friday, E Xhori, K Ballentine-Cargill, H Estrella, S Gonzalez de la torre, J Lukin, LS Phillips, D Olson, M Rhee, TS Raines, J Boers, C Gullett, M Maher-Albertelli, R Mungara, L Savoye, CA White, F Morehead, S Person, M Sibymon, S Tanukonda, A Balasubramanyam, R Gaba, P Hollander, E Roe, P Burt, K Chionh, C Falck-Ytter, L Sayyed Kassem, M Tiktin, T Kulow, KA Stancil, J Iacoboni, MV Kononets, L Colosimo, R Goland, J Pring, L Alfano, C Hausheer, K Gumpel, A Kirpitch, JB Green, H AbouAssi, MN Feinglos, J English Jones, RP Zimmer, BM Satterwhite, K Evans Kreider, CR Thacker, CN Mariash, KJ Mather, A Lteif, V Pirics, D Aguillar, S Hurt, R Bergenstal, T Martens, J Hyatt, H Willis, W Konerza, K Kleeberger, R Passi, S Fortmann, M Herson, K Mularski, H Glauber, J Prihoda, B Ash, C Carlson, PA Ramey, E Schield, B Torgrimson-Ojerio, E Panos, S Sahnow, K Bays, K Berame, D Ghioni, J Gluth, K Schell, J Criscola, C Friason, S Nazarov, N Rassouli, R Puttnam, B Ojoawo, C Sanders-Jones, Z El-Haqq, A Kolli, J Meigs, A Dushkin, G Rocchio, M Yepes, H Dulin, M Cayford, A DeManbey, M Hillard, N Thangthaeng, L Gurry, R Kochis, E Raymond, V Ripley, V Aroda, A Loveland, M Hamm, HJ Florez, WM Valencia, S Casula, L Oropesa-Gonzalez, L Hue, AK Riccio Veliz, R Nieto-Martinez, M Gutt, A Ahmann, D Aby-Daniel, F Joarder, V Morimoto, C Sprague, D Yamashita, N Cady, N Rivera-Eschright, P Kirchhoff, B Morales Gomez, J Adducci, A Goncharova, SH Hox, M Matwichyna, NO Bermudez, L Broadwater, RR Ishii, DS Hsia, WT Cefalu, FL Greenway, C Waguespack, N Haynes, A Thomassie, B Bourgeois, C Hazlett, S Mudaliar, S Boeder, J Pettus, D Garcia-Acosta, S Maggs, C DeLue, E Castro, J Krakoff, JM Curtis, T Killean, E Joshevama, K Tsingine, T Karshner, J Albu, FX Pi-Sunyer, S Frances, C Maggio, J Bastawrose, X Gong, MA Banerji, D Lorber, NM Brown, DH Josephson, LL Thomas, M Tsovian, MH Jacobson, MM Mishko, MS Kirkman, JB Buse, J Dostou, K Bergamo, A Goley, JF Largay, S Guarda, J Cuffee, D Culmer, H Almeida, S Coffer, L Kiker, K Josey, WT Garvey, A Agne, S McCullars, RM Cohen, MC Rogge, K Kersey, S Lipp, MB Vonder Meulen, C Underkofler, S Steiner, E Cline, WH Herman, R Pop-Busui, MH Tan, A Waltje, A Katona, L Goodhall, R Eggleston, K Whitley, S Bule, N Kessler, E LaSalle, ER Seaquist, A Bantle, T Harindhanavudhi, B Redmon, M Coe, M Mech, A Taddese, L Lesne, L Kuechenmeister, V Shivaswamy, AL Morales, K Seipel, J Eggert, R Tillson, DS Schade, A Adolphe, M Burge, E Duran-Valdez, P August, MG Rodriguez, O Griffith, A Naik, Barbara I Gulanski, Heidi Krause-Steinrauf, Judith H Lichtman, Jennifer B Green, Colleen E Suratt, Hiba AbouAssi, Andrew J Ahmann, E Gonzalez Hattery, A Ideozu, G McPhee, SA Khan, JB Kimpel, HM Ismail, ME Larkin, M Magee, A Ressing, L Manandhar, F Mwicigi, V Lagari-Libhaber, A Cuadot, YJ Kendal, B Veciana, G Fry, A Dragg, B Gildersleeve, J Arceneaux, M Pavlionis, A Stallings, S Machineni, AL Cherrington, MCR Lawson, C Adkins, T Onadeko, M Razzaghi, C Lyon, R Penaloza, WI Sivitz, LK Knosp, S Bojescu, S Burbach, A Bancroft, FA Jamaleddin Ahmad, D Hernandez McGinnis, B Pucchetti, E Scripsick, A Zamorano, RA DeFronzo, E Cersosimo, M Abdul-Ghani, C Triplitt, D Juarez, RI Garza, H Verastiqui, C Puckett, P Raskin, C Rhee, LF Jordan, S Sao, L Osornio Walker, L Schnurr-Breen, RB Kreymer, D Sturgess, KM Utzschneider, SE Kahn, L Alarcon-Casas Wright, EJ Boyko, EC Tsai, DL Trence, S Trikudanathan, BN Fattaleh, BK Montgomery, KM Atkinson, A Kozedub, T Concepcion, C Moak, N Prikhodko, S Rhothisen, TA Elasy, L Shackelford, R Goidel, N Hinkle, C Lovell, J Lipps Hogan, JB McGill, T Schweiger, S Kissel, C Recklein, MJ Clifton, W Tamborlane, A Camp, B Gulanski, SE Inzucchi, M Alguard, P Gatcomb, K Lessard, L Iannone, A Montosa, E Magenheimer, J Fradkin, HB Burch, AA Bremer, DM Nathan, JM Lachin, H Krause-Steinrauf, N Younes, I Bebu, N Butera, CJ Buys, MR Gramzinski, SD Hall, E Kazemi, E Legowski, C Suratt, M Tripputi, A Arey, J Bethepu, P Mangat Dhaliwal, E Mesimer, M Steffes, J Seegmiller, A Saenger, V Arends, D Gabrielson, T Conner, J Huminik, A Scrymgeour, EZ Soliman, Y Pokharel, ZM Zhang, L Keasler, S Hensley, R Mihalcea, DJ Min, V Perez-Rosas, K Resnicow, H Shao, J Luchsinger, S Assuras, E Groessl, F Sakha, N Hillery, BM Everett, I Abdouch, G Bahtiyar, P Brantley, FE Broyles, G Canaris, P Copeland, JJ Craine, WL Fein, A Gliwa, L Hope, R Meiners, V Meiners, H O’Neal, JE Park, A Sacerdote, E Sledge, L Soni, J Steppel-Reznik, B Brooks-Worrell, CS Hampe, JP Palmer, A Shojaie, L Doner Lotenberg, JM Gallivan, and DM Tuncer
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Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 - Abstract
Introduction Type 2 diabetes mellitus (T2DM) is a powerful risk factor for cardiovascular disease (CVD), conferring a greater relative risk in women than men. We sought to examine sex differences in cardiometabolic risk factors and management in the contemporary cohort represented by the Glycemia Reduction Approaches in Diabetes: A Comparative Effectiveness Study (GRADE).Research design and methods GRADE enrolled 5047 participants (1837 women, 3210 men) with T2DM on metformin monotherapy at baseline. The current report is a cross-sectional analysis of baseline data collected July 2013 to August 2017.Results Compared with men, women had a higher mean body mass index (BMI), greater prevalence of severe obesity (BMI≥40 kg/m2), higher mean LDL cholesterol, greater prevalence of low HDL cholesterol, and were less likely to receive statin treatment and achieve target LDL, with a generally greater prevalence of these risk factors in younger women. Women with hypertension were equally likely to achieve blood pressure targets as men; however, women were less likely to receive ACE inhibitors or angiotensin receptor blockers. Women were more likely to be divorced, separated or widowed, and had fewer years of education and lower incomes.Conclusions This contemporary cohort demonstrates that women with T2DM continue to have a greater burden of cardiometabolic and socioeconomic risk factors than men, particularly younger women. Attention to these persisting disparities is needed to reduce the burden of CVD in women.Trial registration number ClinicalTrials.gov (NCT01794143)
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- 2023
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225. The AgeSmart Inventory©: A Multifaceted Tool to Understand Age Bias
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Kate de Medeiros PhD, Suzanne Kunkel PhD, and Lei Yu MSG
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Geriatrics ,RC952-954.6 - Abstract
Ageism has been recognized as a global problem leading to poorer health, isolation, and workplace discrimination toward people based on their age. Consequently, there are several tools that measure levels and types of ageism with a focus on the quantification of degrees and types of ageism. While such quantification is valuable, this paper describes the development of an inventory, created over four stages, designed to foster introspective and collaborative thinking about age-directed values. In Stage 1, 34 items were identified through a comprehensive literature review. In Stage 2, the items were evaluated and revised via a focus group discussion. In Stage 3, the revised ASI was administered to a representative U.S. sample ( N = 513). Based on factor and conceptual analysis, a revised version was tested on a second sample ( N = 507) (Stage 4) and again revised. The final ASI consists of 35 age-related statements: 22 psychometrically linked to one of four domains, six related to identity, and seven that, although not aligned with statistical results, are conceptually important. Rather than provide an ageism score, the ASI is a tool for introspection and reflection about individual values and judgements about age which can lead to customized strategies to address potential age biases.
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- 2023
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226. Mendelian Disorders in an Interstitial Cystitis/Bladder Pain Syndrome Cohort
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Elicia Estrella, Shira Rockowitz, Marielle Thorne, Pressley Smith, Jeanette Petit, Veronica Zehnder, Richard N. Yu, Stuart Bauer, Charles Berde, Pankaj B. Agrawal, Alan H. Beggs, Ali G. Gharavi, Louis Kunkel, and Catherine A. Brownstein
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bladder ,genetics ,genital ,genomics ,Mendelian ,pain ,Genetics ,QH426-470 - Abstract
Abstract Interstitial cystitis/bladder pain syndrome (IC/BPS) is a chronic pain disorder causing symptoms of urinary frequency, urgency, and bladder discomfort or pain. Although this condition affects a large population, little is known about its etiology. Genetic analyses of whole exome sequencing are performed on 109 individuals with IC/BPS. One family has a previously reported SIX5 variant (ENST00000317578.6:c.472G>A, p.Ala158Thr), consistent with Branchiootorenal syndrome 2 (BOR2). A likely pathogenic heterozygous variant in ATP2A2 (ENST00000539276.2:c.235G>A, p.Glu79Lys) is identified in two unrelated probands, indicating possible Darier‐White disease. Two private heterozygous variants are identified in ATP2C1 (ENST00000393221.4:c.2358A>T, p.Glu786Asp (VUS/Likely Pathogenic) and ENST00000393221.4:c.989C>G, p.Thr330Ser (likely pathogenic)), indicative of Hailey‐Hailey Disease. Sequence kernel association test analysis finds an increased burden of rare ATP2C1 variants in the IC/BPS cases versus a control cohort (p = 0.03, OR = 6.76), though does not survive Bonferroni correction. The data suggest that some individuals with IC/BPS may have unrecognized Mendelian syndromes. Comprehensive phenotyping and genotyping aid in understanding the range of diagnoses in the population‐based IC/BPS cohort. Conversely, ATP2C1, ATP2A2, and SIX5 may be candidate genes for IC/BPS. Further evaluation with larger numbers is needed. Genetically screening individuals with IC/BPS may help diagnose and treat this painful disorder due to its heterogeneous nature.
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- 2023
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227. Outcomes of an Inter-Professional Education Event for Social Work and Allied Health Professional Students Working with Families in Poverty: Implications for Social Work Education
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Voth Schrag, Rachel J., Mitschke, Diane, Orwig, Tracy, and Kunkel, Laura
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Interprofessional education (IPE) aims to introduce students to the importance of team-based decision making. This article presents evaluation data from an IPE poverty simulation event. The goals of the project were to increase students' understanding of the barriers faced by families in poverty, and to increase students' confidence when working with families in poverty. Results show that students experienced enhanced confidence in their ability to work with families living in poverty, as well as an increase in the number of key practice behaviors they were likely to perform. These findings demonstrate that IPE simulations can enhance the understanding and confidence of social work students working with such families.
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- 2021
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228. The Eugenic University
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Juliet Rose Kunkel
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This dissertation examines the university and institutions of schooling as technologies of power imbricated in the state violences they purport to be separate from or the solution to. I examine the logics of the university within the assemblages of policing, settlement, and empire of the U.S. state and its racial capitalist regime. I use methodological practices of "curation" to draw together disjunctive moments, theories, and analytic techniques in order to highlight new analyses and openings for contestation. I explore Northern California universities in the Progressive Era as a case study of these assemblages, examining key university administrators, professors, and researchers who were involved in the burgeoning eugenics movement. These include August Vollmer, the "father of modern policing" and the founder of the first university criminology department; Leo Stanley, chief surgeon and researcher at San Quentin State Prison; David Starr Jordan, first president of Stanford University and preeminent philosopher of eugenics; and David Prescott Barrows, president of UC Berkeley, phrenologist, and architect of the public school system in the Philippines. Data sources include Bancroft Library Archives, including the major collections of the August Vollmer Papers and David P. Barrows Papers; the Marin County Free Library archives, including the David Starr Jordan Papers, Leo L. Stanley Papers, and archives related to the Panama-Pacific International Exhibition; and the published works available online of Vollmer, Stanley, Jordan, and Barrows. The first chapter interrogates writings of August Vollmer and Leo L. Stanley with a discussion of prisons and policing in the context of racial capitalism. The second chapter brings theorizations of David Starr Jordan together with an analysis of democratization of land and education in the context of settler colonialism. The third chapter analyzes the work of David P. Barrows and colonial and international education in the context of U.S. imperialism. Together, these chapters discuss the technologies and logics of education, schooling, and universities in order to curate a broader critique of the institutions and the nature and structure of the United States. [The dissertation citations contained here are published with the permission of ProQuest LLC. Further reproduction is prohibited without permission. Copies of dissertations may be obtained by Telephone (800) 1-800-521-0600. Web page: http://www.proquest.com/en-US/products/dissertations/individuals.shtml.]
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- 2021
229. Longitudinal Patterns in Adolescent Intentions to Seek Help for Dating Violence: A Latent Transition Analysis
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Sianko, Natallia and Kunkel, Deborah
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- 2022
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230. Differential compartmentalization of myeloid cell phenotypes and responses towards the CNS in Alzheimer’s disease
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Fernández Zapata, Camila, Giacomello, Ginevra, Spruth, Eike J., Middeldorp, Jinte, Gallaccio, Gerardina, Dehlinger, Adeline, Dames, Claudia, Leman, Julia K. H., van Dijk, Roland E., Meisel, Andreas, Schlickeiser, Stephan, Kunkel, Desiree, Hol, Elly M., Paul, Friedemann, Parr, Maria Kristina, Priller, Josef, and Böttcher, Chotima
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- 2022
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231. Gaze-contingent display technology can help to reduce the ipsilesional attention bias in hemispatial neglect following stroke
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Kunkel genannt Bode, Lisa, Schulte, Anna Sophie, Hauptmann, Björn, Münte, Thomas F., Sprenger, Andreas, and Machner, Björn
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- 2022
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232. The human experience of comprehending source code in virtual reality
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Dominic, James, Tubre, Brock, Kunkel, Deborah, and Rodeghero, Paige
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- 2022
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233. Analysis of diverse double-strand break synapsis with Polλ reveals basis for unique substrate specificity in nonhomologous end-joining
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Kaminski, Andrea M., Chiruvella, Kishore K., Ramsden, Dale A., Bebenek, Katarzyna, Kunkel, Thomas A., and Pedersen, Lars C.
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- 2022
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234. The impact of COVID-19 on the treatment of opioid use disorder in carceral facilities: a cross-sectional study
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Saunders, Elizabeth C., Satcher, Milan F., Monico, Laura B., McDonald, Ryan D., Springer, Sandra A., Farabee, David, Gryczynski, Jan, Nyaku, Amesika, Reeves, Donald, Kunkel, Lynn E., Schultheis, Alysse M., Schwartz, Robert P., Lee, Joshua D., Marsch, Lisa A., and Waddell, Elizabeth Needham
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- 2022
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235. Effects of caloric restriction on the gut microbiome are linked with immune senescence
- Author
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Julia Sbierski-Kind, Sophia Grenkowitz, Stephan Schlickeiser, Arvid Sandforth, Marie Friedrich, Désirée Kunkel, Rainer Glauben, Sebastian Brachs, Knut Mai, Andrea Thürmer, Aleksandar Radonić, Oliver Drechsel, Peter J. Turnbaugh, Jordan E. Bisanz, Hans-Dieter Volk, Joachim Spranger, and Reiner Jumpertz von Schwartzenberg
- Subjects
Gut microbiota ,Adaptive immune system ,Caloric restriction ,Obesity ,Immune senescence ,Microbial ecology ,QR100-130 - Abstract
Abstract Background Caloric restriction can delay the development of metabolic diseases ranging from insulin resistance to type 2 diabetes and is linked to both changes in the composition and metabolic function of the gut microbiota and immunological consequences. However, the interaction between dietary intake, the microbiome, and the immune system remains poorly described. Results We transplanted the gut microbiota from an obese female before (AdLib) and after (CalRes) an 8-week very-low-calorie diet (800 kcal/day) into germ-free mice. We used 16S rRNA sequencing to evaluate taxa with differential abundance between the AdLib- and CalRes-microbiota recipients and single-cell multidimensional mass cytometry to define immune signatures in murine colon, liver, and spleen. Recipients of the CalRes sample exhibited overall higher alpha diversity and restructuring of the gut microbiota with decreased abundance of several microbial taxa (e.g., Clostridium ramosum, Hungatella hathewayi, Alistipi obesi). Transplantation of CalRes-microbiota into mice decreased their body fat accumulation and improved glucose tolerance compared to AdLib-microbiota recipients. Finally, the CalRes-associated microbiota reduced the levels of intestinal effector memory CD8+ T cells, intestinal memory B cells, and hepatic effector memory CD4+ and CD8+ T cells. Conclusion Caloric restriction shapes the gut microbiome which can improve metabolic health and may induce a shift towards the naïve T and B cell compartment and, thus, delay immune senescence. Understanding the role of the gut microbiome as mediator of beneficial effects of low calorie diets on inflammation and metabolism may enhance the development of new therapeutic treatment options for metabolic diseases. Trial registration NCT01105143 , “Effects of negative energy balance on muscle mass regulation,” registered 16 April 2010. Video Abstract
- Published
- 2022
- Full Text
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236. Transmission of SARS‐CoV‐2 from humans to a 16‐year‐old domestic cat with comorbidities in Pennsylvania, USA
- Author
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Deepanker Tewari, Lore Boger, Steven Brady, Julia Livengood, Mary Lea Killian, Meera Surendran Nair, Nagaraja Thirumalapura, Suresh V. Kuchipudi, Corey Zellers, Betsy Schroder, Mia Torchetti, Ann Carpenter, Amber Kunkel, and Kevin Brightbill
- Subjects
cat ,histopathology ,infection ,lungs ,rRT‐PCR ,SARS‐CoV‐2 ,Veterinary medicine ,SF600-1100 - Abstract
Abstract Background and Objectives Severe acute respiratory syndrome coronavirus 2 (SARS‐CoV‐2), besides causing human infection, has been shown to naturally infect several susceptible animal species including large cats (tigers, lions, pumas, spotted leopards), dogs, cats, ferrets, gorillas and minks. Cats and minks are continuing to be the most reported species with SARS‐CoV‐2 infections among animals but it needs to be investigated further. Methods and Results We report the detection of SARS‐CoV‐2 from a domestic cat that exhibited respiratory disease after being exposed to SARS‐CoV‐2 virus from humans in the same household. SARS‐CoV‐2 RNA was detected in two oropharyngeal swabs collected at two time points, 11 days apart; the first, when the cat was reported to be sick and the second, before euthanasia due to poor prognosis. The viral nucleic acid detected at two time points showed no genomic variation and resembled the clade GH circulating in humans in the United States. Clinical and pathological findings noted in this 16‐year‐old cat were consistent with respiratory and cardiac insufficiency. Conclusions SARS‐CoV‐2 viral infection was likely an incidental clinical finding, as the virus was not detected in fixed lungs, heart, or kidney tissues. Only fresh lung tissue collected at necropsy showed the presence of viral nucleic acid, albeit at a very low level. Further research is needed to clarify the clinical course of SARS‐CoV‐2 in companion animals of advanced age and underlying cardiac disease.
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- 2022
- Full Text
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237. Ist die Anamnese einer Penicillinallergie ein Risikofaktor für Wundinfektionen in der Mund‑, Kiefer- und Gesichtschirurgie?
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Kunkel, Martin
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- 2023
- Full Text
- View/download PDF
238. Twin GEM-TPC Prototype (HGB4) Beam Test at GSI and Jyv\'askyl\'a - a Development for the Super-FRS at FAIR
- Author
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García, F., Turpeinen, R., Äystö, J., Grahn, T., Rinta-Antila, S., Jokinen, A., Kunkel, J., Kleipa, V., Gromliuk, A., Risch, H., Caesar, C., Simons, C., Schmidt, C. J., Prochazka, A., Hoffmann, J., Rusanov, I., Kurz, N., Heggen, H., Strmen, P., Pikna, M., and Sitar, B.
- Subjects
Physics - Instrumentation and Detectors ,F.2.2 ,I.2.7 - Abstract
The FAIR[1] facility is an international accelerator centre for research with ion and antiproton beams. It is being built at Darmstadt, Germany as an extension to the current GSI research institute. One major part of the facility will be the Super-FRS[2] separator, which will be include in phase one of the project construction. The NUSTAR experiments will benefit from the Super-FRS, which will deliver an unprecedented range of radioactive ion beams (RIB). These experiments will use beams of different energies and characteristics in three different branches; the high-energy which utilizes the RIB at relativistic energies 300-1500 MeV/u as created in the production process, the low-energy branch aims to use beams in the range of 0-150 MeV/u whereas the ring branch will cool and store beams in the NESR ring. The main tasks for the Super-FRS beam diagnostics chambers will be for the set up and adjustment of the separator as well as to provide tracking and event-by-event particle identification. The Helsinki Institute of Physics, and the Detector Laboratory and Experimental Electronics at GSI are in a joint R&D of a GEM-TPC detector which could satisfy the requirements of such tracking detectors, in terms of tracking efficiency, space resolution, count rate capability and momenta resolution. The current prototype, which is the generation four of this type, is two GEM-TPCs in twin configuration inside the same vessel. This means that one of the GEM-TPC is flipped on the middle plane w.r.t. the other one. This chamber was tested at Jyv\"askyl\"a accelerator with protons projectiles and at GSI with Uranium, fragments and Carbon beams during this year 2016., Comment: 5 pages, 8 figures
- Published
- 2017
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- View/download PDF
239. Active SU(1,1) atom interferometry
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Linnemann, D., Schulz, J., Muessel, W., Kunkel, P., Prüfer, M., Frölian, A., Strobel, H., and Oberthaler, M. K.
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Condensed Matter - Quantum Gases ,Quantum Physics - Abstract
Active interferometers use amplifying elements for beam splitting and recombination. We experimentally implement such a device by using spin exchange in a Bose-Einstein condensate. The two interferometry modes are initially empty spin states that get spontaneously populated in the process of parametric amplification. This nonlinear mechanism scatters atoms into both modes in a pairwise fashion and generates a nonclassical state. Finally, a matched second period of spin exchange is performed that nonlinearly amplifies the output signal and maps the phase onto readily detectable first moments. Depending on the accumulated phase this nonlinear readout can reverse the initial dynamics and deamplify the entangled state back to empty spin states. This sequence is described in the framework of SU(1,1) mode transformations and compared to the SU(2) angular momentum description of passive interferometers., Comment: 10 pages, 6 figures; invited article for Quantum Science and Technology
- Published
- 2017
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240. Spatially distributed multipartite entanglement enables Einstein-Podolsky-Rosen steering of atomic clouds
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Kunkel, Philipp, Prüfer, Maximilian, Strobel, Helmut, Linnemann, Daniel, Frölian, Anika, Gasenzer, Thomas, Gärttner, Martin, and Oberthaler, Markus K.
- Subjects
Condensed Matter - Quantum Gases ,Quantum Physics - Abstract
A key resource for distributed quantum-enhanced protocols is entanglement between spatially separated modes. Yet, the robust generation and detection of nonlocal entanglement between spatially separated regions of an ultracold atomic system remains a challenge. Here, we use spin mixing in a tightly confined Bose-Einstein condensate to generate an entangled state of indistinguishable particles in a single spatial mode. We show experimentally that this local entanglement can be spatially distributed by self-similar expansion of the atomic cloud. Spatially resolved spin read-out is used to reveal a particularly strong form of quantum correlations known as Einstein-Podolsky-Rosen steering between distinct parts of the expanded cloud. Based on the strength of Einstein-Podolsky-Rosen steering we construct a witness, which testifies up to genuine five-partite entanglement., Comment: 27 pages, 4 figures, 6 supplementary figures
- Published
- 2017
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241. A Large Ungated TPC with GEM Amplification
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Berger, M., Ball, M., Fabbietti, L., Ketzer, B., Arora, R., Beck, R., Böhmer, F., Chen, J. -C., Cusanno, F., Dørheim, S., Hehner, J., Herrmann, N., Höppner, C., Kaiser, D., Kis, M., Kleipa, V., Konorov, I., Kunkel, J., Kurz, N., Leifels, Y., Müllner, P., Münzer, R., Neubert, S., Rauch, J., Schmidt, C. J., Schmitz, R., Soyk, D., Vandenbroucke, M., Voss, B., Walther, D., and Zmeskal, J.
- Subjects
Physics - Instrumentation and Detectors ,High Energy Physics - Experiment - Abstract
A Time Projection Chamber (TPC) is an ideal device for the detection of charged particle tracks in a large volume covering a solid angle of almost $4\pi$. The high density of hits on a given particle track facilitates the task of pattern recognition in a high-occupancy environment and in addition provides particle identification by measuring the specific energy loss for each track. For these reasons, TPCs with Multiwire Proportional Chamber (MWPC) amplification have been and are widely used in experiments recording heavy-ion collisions. A significant drawback, however, is the large dead time of the order of 1 ms per event generated by the use of a gating grid, which is mandatory to prevent ions created in the amplification region from drifting back into the drift volume, where they would severely distort the drift path of subsequent tracks. For experiments with higher event rates this concept of a conventional TPC operating with a triggered gating grid can therefore not be applied without a significant loss of data. A continuous readout of the signals is the more appropriate way of operation. This, however, constitutes a change of paradigm with considerable challenges to be met concerning the amplification region, the design and bandwidth of the readout electronics, and the data handling. A mandatory prerequisite for such an operation is a sufficiently good suppression of the ion backflow from the avalanche region, which otherwise limits the tracking and particle identification capabilities of such a detector. Gas Electron Multipliers (GEM) are a promising candidate to combine excellent spatial resolution with an intrinsic suppression of ions. In this paper we describe the design, construction and the commissioning of a large TPC with GEM amplification and without gating grid (GEM-TPC)., Comment: 73 pages, 55 figures
- Published
- 2017
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242. High Prevalence and Broad Distribution of Trichomonas gypaetinii in Bald Eagles (Haliaeetus leucocephalus ) in the USA.
- Author
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Cunningham, Abigail J., Garrett, Kayla B., Nemeth, Nicole M., Barron, Heather, Stasiak, Iga, Groves, Bethany, Gibbs, Samantha E. J., Ruder, Mark G., Kunkel, Melanie R., Weyna, Alisia A. W., Teo, Xuan H., Goodwin, Chloe, Radisic, Rebecca, O’Reilly, Aidan, Swanepoel, Liandrie, Cleveland, Christopher A., Slankard, Kate G., and Yabsley, Michael J.
- Abstract
Trichomonas gypaetinii was detected in 117 (88%) of 133 Bald Eagles (Haliaeetus leucocephalus) and in 0/7 Golden Eagles (Aquila chrysaetos) in the USA, with no sex or age prevalence difference. All eagles lacked associated lesions. This study indicated that T. gypaetinii is common and widespread in Bald Eagles, but rarely associated with disease. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
243. Clinical Outcomes of Patients Experiencing Transient Loss of Pulse Pressure During High-Risk PCI with Impella.
- Author
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BASIR, MIR B., BENTLEY, DANA, TRUESDELL, ALEXANDER G., KUNKEL, KATHERINE, LEMOR, ALEJANDRO, MEGALY, MICHAEL, ALQARQAZ, MOHAMMAD, ALASWAD, KHALDOON, KHANDEWAL, AKSHAY, JORTBERG, ELISE, KALRA, SANJOG, KAKI, AMIR, BURKHOFF, DANIEL, MOSES, JEFFREY W., PINTO, DUANE S., STONE, GREGG W., and O'NEILL, WILLIAM W.
- Abstract
• Patients experiencing loss of pulse pressure (LOPP) during high-risk percutaneous coronary intervention (HR-PCI) are transiently dependent on mechanical circulatory support (MCS) devices. • LOPP during HR-PCI with Impella was common and occurred more frequently in patients with cardiomyopathy and low systolic blood pressure. LOPP was strongly associated with higher 90-day major adverse cardiac and cerebrovascular events, acute kidney injury, and mortality. • The ongoing randomized PROTECT-IV trial will determine whether Impella CP support during HR-PCI improves early and late clinical outcomes compared with the standard of care. The trial includes a right heart catheterization substudy that should help to define the role of invasive hemodynamics in stratifying and managing patients undergoing HR-PCI. Patients experiencing loss of pulse pressure (LOPP) during high-risk percutaneous coronary intervention (HR-PCI) are transiently dependent on mechanical circulatory support devices. We sought to define the frequency and clinic outcomes of patients who experience LOPP during HR-PCI. Patients enrolled in the PROTECT III study and had automated Impella controller logs capturing real-time hemodynamics were included in this analysis. A LOPP event was defined as a mean pulse pressure on Impella of <20 mm Hg for ≥5 seconds during PCI. Clinical characteristics and outcomes were then compared between those with and without LOPP. Logistic regression identified clinical and hemodynamic predictors of LOPP. We included 302 patients, of whom 148 patients (49%) experienced LOPP. Age, sex, and comorbidities were similar in patients with and without LOPP. Mean baseline systolic blood pressure (118.6 mm Hg vs 129.8 mm Hg; P <.001) and mean arterial pressure (86.9 mm Hg vs 91.6 mm Hg; P =.011) were lower in patients with LOPP, whereas heart rate (78 bpm vs 73 bpm; P =.012) was higher. Anatomical complexity was similar between groups. Patients with LOPP were more likely to experience major adverse cardiac and cerebrovascular events (23.5% vs 8.8%; P =.002), acute kidney injury (10.1% vs 2.6%; P =.030), and death (20.2% vs 7.9%; P =.008) within 90 days. A low baseline systolic blood pressure and cardiomyopathy were the strongest predictors of LOPP (P =.003 and P =.001, respectively). LOPP on Impella during HR-PCI was common and occurred more frequently in patients with cardiomyopathy and a low systolic blood pressure. LOPP was strongly associated with higher 90-day major adverse cardiac and cerebrovascular events, acute kidney injury, and mortality. Condensed Abstract We sought to define the frequency and clinic outcomes of patients who experience LOPP during high-risk percutaneous coronary intervention (HR-PCI). We included 302 patients, of whom 148 (49%) experienced LOPP. Patients with LOPP were more likely to experience major adverse cardiac and cerebrovascular events (23.5% vs 8.8%; P =.002), acute kidney injury (10.1% vs 2.6%; P =.030), and death (20.2% vs 7.9%; P =.008) within 90 days. A low baseline systolic blood pressure and cardiomyopathy were the strongest predictors of LOPP (P =.003 and P =.001, respectively). [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
244. Causes of morbidity and mortality in wild cottontail rabbits in the eastern United States, 2013–2022.
- Author
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Weyna, Alisia A. W., Andreasen, Victoria A., Burrell, Caitlin E., Kunkel, Melanie R., Radisic, Rebecca, Goodwin, Chloe C., Fenton, Heather, Dugovich, Brian S., Poulson, Rebecca L., Ruder, Mark G., Yabsley, Michael J., Sanchez, Susan, and Nemeth, Nicole M.
- Subjects
FRANCISELLA tularensis ,WILDLIFE diseases ,BACTERIAL diseases ,RABBITS ,LAGOMORPHA ,RABBIT diseases ,TULAREMIA - Abstract
Interest in causes of mortality of free-ranging, native North American lagomorphs has grown with the emergence of rabbit hemorrhagic disease virus 2 (RHDV2). Over the years 2013–2022, the Southeastern Cooperative Wildlife Disease Study received 119 Sylvilagus spp. case submissions from the central and eastern United States, comprising 147 rabbits. Most (86%) of these submissions occurred after detecting RHDV2 in the United States in 2020. Laboratory data from these rabbits were retrospectively evaluated for major causes, contributors to mortality, and pathogen detections. Gross and histologic examination was performed for 112 rabbits. Common primary causes of death included trauma (n = 49), bacterial disease (n = 31), emaciation (n = 6), and parasitism (n = 6). Among the 32 rabbits with bacterial disease, 12 were diagnosed with tularemia and 7 with pasteurellosis. Rabbits with pasteurellosis had disseminated abscessation, septicemia, and/or polyserositis. Less commonly, cutaneous fibroma (n = 2), notoedric mange (n = 2), encephalitozoonosis (n = 2), neoplasia (round-cell sarcoma; n = 1), and congenital abnormalities (n = 1) were diagnosed. RHDV2 was not detected in 123 rabbits tested. Although RHDV2 has not been detected in wild lagomorphs in the eastern United States, detections in domestic rabbits from the region emphasize the need for continued surveillance. Furthermore, continued surveillance for Francisella tularensis informs public health risk. Overall, increased knowledge of Sylvilagus spp. health furthers our understanding of diseases affecting these important prey and game species. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
245. Successes and Challenges in Nonrevenue Water Management.
- Author
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Kunkel, George
- Subjects
WATER conservation ,WATER management ,AUDITING ,SUCCESS - Abstract
Water loss control tools have become more precise and robust while their importance for measuring and controlling nonrevenue water has increased. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
246. An Investigation of Indicators of Success in Graduates of a Progressive, Urban, Public High School
- Author
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Kunkel, Christine D.
- Abstract
Using standardized test scores to measure success in schools is a controversial topic in education today. Many feel that test scores are not a valid indicator of success, or are being overused to the detriment of the curriculum. But if not test scores, then what is the alternative? This study examines potential alternatives, or more authentic indicators of student success through a survey of alumni from one progressive, urban, public school, and also how this school might have contributed to this success. Participants in this study identified markers for success both while in school as well as later in adult life. Project presentations, reflective portfolio work, leadership and service experiences, daily classroom and quarterly assessments, graduation and acceptance into college were identified as indicators of success while in high school. Later in life, participants noted that graduating from college, getting a job, purchasing a home, being able to pay the bills, community engagement, and being happy and satisfied with life were also indicators of success. These findings suggest that while standardized test scores offer a snapshot of information about K-12 students, educational leaders need to look far beyond these scores to gauge true success. This study suggests ways to look at how students and schools are actually performing in deep and authentic ways, and presents curriculum that has been reported to foster success in students' lives.
- Published
- 2016
247. Adult Education and Training Programs for Older Adults in the U.S.: Country Comparisons Using PIAAC Data
- Author
-
Cummins, Phyllis A. and Kunkel, Suzanne R.
- Abstract
Historically, older and lower-skilled adults in the U.S. have participated in Adult Education and Training (AET) at lower rates than other groups, possibly because of perceived lack of return on investment due to the time required to recover training costs. Global, knowledge based economies have increased the importance of lifelong learning for all age groups. This paper reports results of a study that used data from the Program for the International Assessment of Adult Competencies (PIAAC) to examine the relationship in the U.S. between participation in AET programs and employment, labor force participation, and income, for adults aged 45 to 65. In addition, comparisons were made for outcomes of AET participation in the U.S. with those in Germany, Japan, Sweden, and the U.K. Consistent with U.S. outcomes, comparison countries had lower AET participation rates by the unemployed compared to the employed and there were wide variations in AET participation between the lowest income quintile and the highest income quintile. For all countries, there was a significant relationship between AET participation and income. There was also a significant relationship between AET participation and labor force participation. [For the full proceedings, see ED581791.]
- Published
- 2016
248. Super-FRS GEM-TPC Prototype Development Based on n-Xyter Asic for the FAIR Facility
- Author
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Garcia, F., Turpeinen, R., Lauhakangas, R., Tuominen, E., Janik, R., Strmen, P., Pikna, M., Sitar, B., Voss, B., Kunkel, J., Kleipa, V., Prochazka, A., Hoffmann, J., Rusanov, I., Kurz, N., and Minami, S.
- Subjects
Physics - Instrumentation and Detectors - Abstract
The FAIR facility is an international accelerator centre for research with ion and antiproton beams. It is being built at Darmstadt, Germany as an extension to the current GSI research institute. One major part of the facility will be the Super-FRS separator, which will be include in phase one of the project construction. The NUSTAR experiments will benefit from the Super-FRS, which will deliver an unprecedented range of radioactive ion beams (RIB). These experiments will use beams of different energies and characteristics in three different branches; the high-energy which utilizes the RIB at relativistic energies 300-1500 MeV /u as created in the production process, the low energy branch aims to use beams in the range of 0-150 MeV/u whereas the ring branch will cool and store beams in the NESR ring. The main tasks for the Super-FRS beam diagnostics chambers will be for the set up and adjustment of the separator as well as to provide tracking and event-by-event particle identification. The Helsinki Institute of Physics, the Comenius University, and the Detector Laboratory and Experimental electronics at GSI are in a joint R&D phase of a GEM-TPC detector which could satisfy the requirements of such diagnostics and tracking chambers in terms of tracking efficiency, space resolution, count rate capability and momenta resolution. The current status of the first prototype and the preliminary results from the test beam campaign S417 using the n-Xyter chips mounted on GEMEX cards will be shown.
- Published
- 2016
- Full Text
- View/download PDF
249. Twin GEM-TPC Prototype (HGB4) Beam Test at GSI - a Development for the Super-FRS at FAIR
- Author
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Garcia, F., Turpeinen, R., Lauhakangas, R., Tuominen, E., Heino, J., Äystö, J., Grahn, T., Rinta-Antilla, S., Jokinen, A., Janik, R., Strmen, P., Pikna, M., Sitar, B., Voss, B., Kunkel, J., Kleipa, V., Gromliuk, A., Risch, H., Kaufeld, I., Caesar, C., Simon, C., kìs, M., Prochazka, A., Nociforo, C., Pietri, S., Simon, H., Schmidt, C. J., Hoffmann, J., Rusanov, I., Kurz, N., Skott, P., Minami, S., and Winkler, M.
- Subjects
Physics - Instrumentation and Detectors - Abstract
The GEM-TPC detector will be part of the standard Super-FRS detection system, as tracker detectors at several focal stations along the separator and its three branches.
- Published
- 2016
- Full Text
- View/download PDF
250. A Single, Multimodal Exercise Tolerance Test Can Assess Combat Readiness in Army-ROTC Cadets: A Brief Report
- Author
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Derek A. Crawford, Katie M. Heinrich, Christopher K. Haddock, W. S. Carlos Poston, R. Sue Day, Christopher Kaipust, Blake Skola, Amanda J. Wakeman, Eric Kunkel, Addison Bell, Emily Wilhite, Nathanial Young, Allison Whitley, and Madelyn Fritts
- Subjects
military ,performance ,testing ,Diseases of the musculoskeletal system ,RC925-935 - Abstract
The Army Combat Fitness Test (ACFT) is a multi-event assessment battery designed to determine the combat readiness of U.S. Army personnel. However, for Reserve Officers’ Training Corps (ROTC) programs the logistical demands of collegiate life make repeated administration of the ACFT challenging. The present study sought to design and evaluate a single, multimodal exercise tolerance test (METT) capable of serving as a time-efficient proxy measure of combat readiness. Methods: Using a formal instrument design process, we constructed the METT to mimic the demands of the ACFT and assessed its reliability, validity, and responsiveness. Results: The METT demonstrates minimal measurement error (i.e., a 2% coefficient of variation), concurrent validity with the ACFT (R2 = 0.327, F = 10.67, p < 0.001), the ability to classify cadets who may be at-risk for failing the ACFT (X2 = 8.16, p = 0.017, sensitivity = 0.878, specificity = 0.667), and appropriate change following a training intervention (5.69 ± 8.9%). Conclusions: The METT has the potential to provide a means to monitor progress, identify areas for improvement, and guide informed decision-making regarding individualization of cadet combat training plans.
- Published
- 2023
- Full Text
- View/download PDF
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